Citrus Sinensis ID: 004918

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----
Protein Sequence
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL
Secondary Structure (PSIPRED)
cccccEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEcccHHHHHcccccccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccEEEEccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEEEEEccccccHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEccEHHHHccccccccHHHHHHccHHHHHHHHHcccccEEEEEccEEEcHHHHHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcHHHHHHHHHHcccEEHHHHHHcccccEEEccccHHHHHHHHHHHHHHccHccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHccEEEEEccccccccccHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
maaprvtmevgnDGVAIITlinppvnalaIPIVAGLkdkfeeatsrddVKAIVLTgnggrfsggfdiNVFQkvhgagdvslmpDVSVELVVNLIEDCKKPIVAAVEGLALggglelamgchariaapktqlglpeltlgvipgfggtqrlprLVGLSKAIEMMLLSKsitseegwkLGLIDAVVTSEELLKVSRLWALDIAARRKpwirslhrtdklgsLSEAREVLKLARLQAkktapnmpqhqACLDVIEegivhggysGVLKEAKVFKELVMLDTSRGLVHVFFAQratskvpnvtdiglkprgvRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGvldysefkdVDMVIEAVIESVPLKQKIFSELekacpphcilatntstidlnivgektssqdriigahffspahvmpLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVgnctgfavnraffpysQSARLLVSLGVDvfridsairsfglpigpfqlldlagygvaaatskefdkafpdrsfqsPLVDLLLKsgrngkangkglytyekgskpkpdpsvlpiIEECRRlsnimpggkpisVTEKEIVEMILFPVVNESCRVLEEGIVVrasdlddasvlgmsfpsyrggiVFWADAVGANYVYTSLKKWSQLygnffkpsrfleeratkgiplsapvsssstsrarl
Flexible Loop (DISEMBL)
maaprvtmevgnDGVAIITLINPPVNALAIPIVAGLKDKFeeatsrddvKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSksitseegwKLGLIDAVVTSEELLKVSRLWALdiaarrkpwirslhrtdklgslseAREVLKLARLQakktapnmpQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFaqratskvpnvtdiglkprgVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIeanvrglvtrgkltqdkaNNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLlksgrngkangkglytyekgskpkpdpsvLPIIEECRrlsnimpggkPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERAtkgiplsapvsssstsrarl
Low Complexity Region (SEG)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIvaaveglalggglelaMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTvgkiikkvpvvvgNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIplsapvsssstsrarl
Disordered region (IsUnstruct)
*********VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL****EVLKLAR************HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP***FQSPLVDLLL****************************LPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFL************************
Disordered Region (DISOPRED)
***PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG********DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA*********************REVLKL**********NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT*************RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVR****************LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLS*********SVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI****************
Disordered Region (DISEMBL)
********EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIP***************
Disordered Region (DISPRO)
**APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP*S*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	724	2.2.26 [Sep-21-2011]
Q9ZPI6	721	Peroxisomal fatty acid be	yes	no	0.987	0.991	0.748	0.0
Q8W1L6	726	Peroxisomal fatty acid be	yes	no	0.997	0.994	0.699	0.0
Q39659	725	Glyoxysomal fatty acid be	N/A	no	0.983	0.982	0.596	0.0
O49809	725	Glyoxysomal fatty acid be	N/A	no	0.988	0.987	0.593	0.0
Q9ZPI5	725	Peroxisomal fatty acid be	no	no	0.984	0.983	0.591	0.0
Q6NYL3	718	Peroxisomal bifunctional	yes	no	0.935	0.942	0.361	1e-109
Q08426	723	Peroxisomal bifunctional	yes	no	0.930	0.932	0.337	1e-105
Q5R5M8	723	Peroxisomal bifunctional	yes	no	0.930	0.932	0.338	1e-103
A8A2L0	714	Fatty acid oxidation comp	yes	no	0.939	0.952	0.332	1e-102
A4WCW6	715	Fatty acid oxidation comp	yes	no	0.939	0.951	0.325	2e-98

>sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1

 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/719 (74%), Positives = 632/719 (87%), Gaps = 4/719 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct: 7   VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67  DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
             ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
           AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
           R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
           QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query: 486 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
           VGNC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query: 546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
               + K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct: 547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606

Query: 606 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 665
           L+NIMPGGKPISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYRG
Sbjct: 607 LTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYRG 666

Query: 666 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL 724
           GIVFWAD VG  Y+Y  LKK S+ YG+FFKPSR+LEERA  G+ L    S S +SR++L
Sbjct: 667 GIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGMLL----SESKSSRSKL 721

Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/723 (69%), Positives = 611/723 (84%), Gaps = 1/723 (0%)

Query: 3   APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct: 4   AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP VAA++GLALGGGLEL MGCHA
Sbjct: 64  GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
           RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
           + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query: 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
           QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
           LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
            LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
           TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+TVGK+IKKV
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
           PVVVGNCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 602
           A A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV  +I+E
Sbjct: 544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603

Query: 603 CRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPS 662
            RR +  MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP 
Sbjct: 604 YRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPK 663

Query: 663 YRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP-VSSSSTSR 721
           +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +PLSAP  +  ++SR
Sbjct: 664 FRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSLPLSAPNATQQASSR 723

Query: 722 ARL 724
           +R+
Sbjct: 724 SRM 726

Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/713 (59%), Positives = 551/713 (77%), Gaps = 1/713 (0%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct: 5   AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query: 62  SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP VAA++GLALGGGLE+AM C
Sbjct: 65  SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+ VGK IK
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K  P+P +   I
Sbjct: 545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           E+ R  S +    K   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM F
Sbjct: 605 EKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGF 664

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP 713
           PSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G  LSAP
Sbjct: 665 PSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQGATLSAP 717

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/720 (59%), Positives = 550/720 (76%), Gaps = 4/720 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
            T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGF
Sbjct: 9   TTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGF 68

Query: 66  DINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
           DI+ F ++  G      +  +S++++ +L+E  KKP VAA++GLALGGGLEL+M CHARI
Sbjct: 69  DISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARI 128

Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           +AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV
Sbjct: 129 SAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV 188

Query: 185 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
              ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM   
Sbjct: 189 PPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHP 248

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
             CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL 
Sbjct: 249 LMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLV 308

Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
           PR + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK+
Sbjct: 309 PRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKM 368

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
           +++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTS
Sbjct: 369 SKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
           TIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+ VGK I+K PV
Sbjct: 429 TIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPV 488

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAA 544
           VVGNCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA 
Sbjct: 489 VVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAI 548

Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECR 604
           AT+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   I++ R
Sbjct: 549 ATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKAR 608

Query: 605 RLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 664
            +S   P  K   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD A + GM FP YR
Sbjct: 609 SVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYR 668

Query: 665 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL 724
           GGI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG PLSAP+     SR+RL
Sbjct: 669 GGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKGAPLSAPLEQ---SRSRL 725

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/718 (59%), Positives = 547/718 (76%), Gaps = 5/718 (0%)

Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP VAA++GLALGGGLELAM CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK IKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
            PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
           VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605

Query: 602 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 661
           + R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM FP
Sbjct: 606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665

Query: 662 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 719
            YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+ LSAPV  +S+
Sbjct: 666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQASS 723

Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/722 (36%), Positives = 389/722 (53%), Gaps = 45/722 (6%)

Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI 
Sbjct: 5   ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            F     AG +   P V +   ++ IE  +KP+VAA+EG+ALGGG ELA+ CH RIA  K
Sbjct: 65  EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            +LGLPE+TLG++P  GGTQRLPRL+G+  A+E++   + ++++E  KLG++D V T + 
Sbjct: 117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175

Query: 189 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA--REVLKLARLQAKKTAPNMPQHQA 246
             +V+  +AL      KP   S  R   L +        + + A +Q +K A  +    A
Sbjct: 176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231

Query: 247 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 302
           C+  +    +   YS G+ +E ++   L     ++ L + FFAQR   K  +P+      
Sbjct: 232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289

Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
            KPR ++  AVIG G MG GI  +  L  + + +  V SE  L  ++T    V G++ R 
Sbjct: 290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLER- 344

Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
              +   + +L +LK  L   + KDVD+VIEAV E + LK++IF EL + C P  +L +N
Sbjct: 345 DAKRRGVSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404

Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
           TS +D++ + + T     + G HFFSPAHVM LLE+V   R+S + I   M++GK + KV
Sbjct: 405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464

Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
            V VGNC GF  NR   PY + A  L+  G    +ID A+  FG  +G F++ DLAG  V
Sbjct: 465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDV 524

Query: 543 AAATSKE-------FDKAFPDRSFQ----SPLVDLLLKSGRNGKANGKGLYTYEK--GSK 589
                KE        D   P R  Q     P+ D++ + GR G+  G+G Y Y+K   + 
Sbjct: 525 GWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMYDKPGDTN 584

Query: 590 PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 649
            KPDP +  ++E  R    I    +P  +T++EI+E  LF + NE  R+L++ I  +  D
Sbjct: 585 AKPDPLIQNLLETYRSRYGI----QPRKITDQEIIERCLFALANEGFRILKDKIAGQPED 640

Query: 650 LDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKG 707
           +D   + G  FP +RGG +F+A  VG   V   L+ +     +    +PS  L++   +G
Sbjct: 641 IDVIYLFGYGFPRHRGGPMFYASMVGLERVLERLEYYHHALPDVPHLEPSPLLKKLVARG 700

Query: 708 IP 709
            P
Sbjct: 701 SP 702

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/724 (33%), Positives = 389/724 (53%), Gaps = 50/724 (6%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F 
Sbjct: 8   HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G       +++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQV 120

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
           GLPE+TLG++PG  GTQ LPRL G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEE 180

Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
            ++ + R+    + +RR   KP I+SL   D +   SEA        L+ ++  P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEAL-------LKMRRQHPGCLAQ 230

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
           +AC+  ++  + +    G+ KE ++F  L+    +R L + FFA+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAERKANKWSTPSGASWK 290

Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCT 408

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 587
           V   + K      P            +R +  P+ D+L + GR G+  GKG Y Y+K  G
Sbjct: 529 VGWKSRKGQGLTGPTLLPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587

Query: 588 SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRA 647
              KPDP +   +   R+  +I    +P ++++ EI+E  L+ ++NE+ R+L EGI    
Sbjct: 588 RIHKPDPWLSKFLSRYRKTHHI----EPRTISQDEILERCLYSLINEAFRILGEGIAASP 643

Query: 648 SDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERAT 705
             +D   + G  +P ++GG +F+A  VG   V   L+K+ +   +    +PS +L++ A+
Sbjct: 644 EHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLAS 703

Query: 706 KGIP 709
           +G P
Sbjct: 704 QGNP 707

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5R5M8|ECHP_PONAB Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/724 (33%), Positives = 388/724 (53%), Gaps = 50/724 (6%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F 
Sbjct: 8   HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G        ++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQV 120

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
           GLPE+TLG++PG  GTQ LPRL+G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEE 180

Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
            ++ + R+    + +RR   KP I+SL   D +   SEA  +LK+ R       P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDTI--FSEA--LLKMRRQH-----PGCLAQ 230

Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
           +AC+  ++  + +    GV KE ++F  L     +R L + F A+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGVKKEEELFLYLFQSGQARALQYAFLAERKANKWSTPSGASWK 290

Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSM--KELGGVDLVIEAVFEEMSLKKQVFAELSAICKPEAFLCT 408

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 587
           V   + K      P            +R +  P+ D+L + GR G+  GKG Y Y+K  G
Sbjct: 529 VGWKSRKGQGLTGPTLPPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587

Query: 588 SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRA 647
              K DP +   + + R   +I    +P ++++ EI+E  L+ ++NE+ R+L EGI    
Sbjct: 588 RIHKADPWLSKFLSQYRETHHI----EPRTISQDEILERCLYSLINEAFRILGEGIAASP 643

Query: 648 SDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERAT 705
             +D   + G  +P ++GG +F+A  VG   V   L+K+ +   +    +PS +L++ A+
Sbjct: 644 EHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLAS 703

Query: 706 KGIP 709
           +G P
Sbjct: 704 QGNP 707

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/716 (33%), Positives = 374/716 (52%), Gaps = 36/716 (5%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  
Sbjct: 8   TLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+      A +   +     +L+   I     P++AA+ G  LGGGLELA+ CH R
Sbjct: 68  GADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGR 126

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           +    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
            VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  
Sbjct: 187 DVVPHSILLEA----AVELAKKDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQG 242

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P  +  L+V+E G+  G  SG   EA+ F EL M   S+ L  +FFA     K P   
Sbjct: 243 NYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKDPGSD 302

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGL 358
                P  +  V ++GGGLMG+GIA        + V +K++N + +   +K     + G 
Sbjct: 303 ---APPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQLEGK 359

Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
           V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I
Sbjct: 360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTI 419

Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
            A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   + + K 
Sbjct: 420 FASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKK 479

Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLA 538
             K P+VV +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  
Sbjct: 480 QGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEV 539

Query: 539 GYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSKPKP--D 593
           G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K K   D
Sbjct: 540 GIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVD 598

Query: 594 PSVLPII--EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 651
           P++ P+I  +   RLS              ++ E  +  ++NE+ R ++E ++    D D
Sbjct: 599 PAIYPLIGAQGQGRLS------------APQVAERCVMLMLNEAVRCVDEQVIRSVRDGD 646

Query: 652 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
             +V G+ FP + GG   + D++GA  V   +++ +  YG+ F P   L E   +G
Sbjct: 647 IGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARG 702

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O9:H4 (strain HS) (taxid: 331112)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A4WCW6|FADJ_ENT38 Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1

 Score =  360 bits (924), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 231/710 (32%), Positives = 371/710 (52%), Gaps = 30/710 (4%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +A++T+  P   +N L       ++   ++     +++ ++ ++     F  
Sbjct: 8   TLNVRLDNIAVVTIDVPGEKMNTLKAEFGVQVRSILKQVRDNKNIRGLIFISAKSDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+  +   A +   +     +++   I     P++AA+ G  LGGGLELA+ CH+R
Sbjct: 68  GADINMIARAKSAQEAEELARQGQQIMAE-IHGLSIPVIAAIHGACLGGGLELALACHSR 126

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           +     KT LGLPE+ LG++PG GGTQRLPRLVG+S A+EM+L  K +   +  K+GL+D
Sbjct: 127 VCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILTGKQLRPRQALKVGLVD 186

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
            VV    LL      A+++A + +   R L   +++  G L  A    ++ +   +KT  
Sbjct: 187 EVVPHSILLTA----AVELAQKERQASRHLPVRERILAGPLGRALLFNRVGKKTEQKTKG 242

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P  +  LDVIE G+  G  SG   EAK F EL M   S+ L  +FFA     K P  +
Sbjct: 243 NYPATKRILDVIETGLSQGSSSGYAAEAKAFGELAMTPQSQALRSIFFASTEVKKDPG-S 301

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
           ++   P     V   G    G    TA     + V +K++N++ +   ++     +   V
Sbjct: 302 EVAPGPLNAIGVLGGGLMGGGISFVTAS-KGKLPVRIKDINAKGINHALQYSWQLLDQKV 360

Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
            R  +   + + AL ++ G +D+S FK  D+VIEAV E + LKQ++ +++E+ C PH I 
Sbjct: 361 KRRHIKASERDRALALISGTIDFSGFKHRDVVIEAVFEDLQLKQQMVADVEQYCAPHTIF 420

Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
           A+NTS++ +  +    +  +++IG HFFSP   MPL+E++  E TSAQ +  ++ + K  
Sbjct: 421 ASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHESTSAQTVATVVKLAKRQ 480

Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
            K P+VV +  GF VNR   PY   A  L++ G  V  +D A+  FG P+GP QLLD  G
Sbjct: 481 GKTPIVVADKAGFYVNRILAPYINEAMRLLTEGEKVENVDDALVKFGFPVGPIQLLDEVG 540

Query: 540 YGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYE---KGSKPKPDP 594
                      + A+ +R F  P  +V  +L   R G+ NG+G Y Y    + SK + DP
Sbjct: 541 IDTGTKIIPVLEAAYGER-FSPPANVVSAILNDDRKGRKNGRGFYLYAAKGRKSKKQVDP 599

Query: 595 SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDAS 654
           SV  +I       N    GK   +T ++  E  +  ++NE+ R  +E ++  A D D  +
Sbjct: 600 SVYGLI-------NASGQGK---LTAQQCAERCVMMMLNEAARCFDEKVIKNARDGDIGA 649

Query: 655 VLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
           V G+ FP + GG   + D++GA  V  +L++ + LYG+ F P   L++ A
Sbjct: 650 VFGIGFPPFLGGPFRYMDSLGAGEVVATLQRLASLYGSRFTPCETLKQMA 699

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
224142159	726	predicted protein [Populus trichocarpa]	0.980	0.977	0.838	0.0
225445200	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	1.0	0.795	0.0
255546439	724	3-hydroxyacyl-CoA dehyrogenase, putative	1.0	1.0	0.803	0.0
315419009	721	MFP [Gossypium hirsutum]	0.994	0.998	0.811	0.0
406365505	724	cinnamoyl-CoA hydratase-dehydrogenase [P	0.977	0.977	0.813	0.0
356520511	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	1.0	0.792	0.0
357500631	722	Peroxisomal fatty acid beta-oxidation mu	0.997	1.0	0.792	0.0
449443155	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	1.0	0.755	0.0
356531273	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	1.0	0.784	0.0
449515444	719	PREDICTED: peroxisomal fatty acid beta-o	0.993	1.0	0.75	0.0

>gi|224142159|ref|XP_002324426.1| predicted protein [Populus trichocarpa] gi|222865860|gb|EEF02991.1| predicted protein [Populus trichocarpa]

 Score = 1214 bits (3140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/710 (83%), Positives = 655/710 (92%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA++TLINPPVNALAIPI+AGLK+KF+EAT R+DVKA+VLTG GGR
Sbjct: 1   MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH  GD+SLMPDVSVELVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL+GLSKAIE+MLLSK I SEEG KLGLI
Sbjct: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S+ELLKVSR WALDI+ RRKPW+RSLHRTDK+GSLSEAREVLK AR QAKK APN
Sbjct: 181 DAIVPSQELLKVSRQWALDISERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQA LDV+EEGI+HGGY+GVLKEAKVFKELV+ +TS+GLVHVFFAQR TSK+P VTD
Sbjct: 241 VPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GLKPR ++KVAVIGGGLMGSGIATA I++NI+VVLKE+NSEYL KG KTIEANVR LVT
Sbjct: 301 VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+DKA+ AL MLKG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAH+MPLLEIVRTE+TSAQ ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNRAFFPY+QSA +LV LGVDVFRID  I SFGLP+GP+QL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRAFFPYTQSALILVHLGVDVFRIDKLISSFGLPMGPYQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AFPDR+FQSPL+ LL+KSGRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVALAVEKEFANAFPDRTFQSPLIHLLVKSGRNGKTNGKGYYIYEKGSKPRPDPSVLPII 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RRL+NIMP GKPI++T+KEIVEM+LFPVVNE+CRVL+EG+VVRASDLD ASVLGMSF
Sbjct: 601 EESRRLANIMPNGKPINITDKEIVEMVLFPVVNEACRVLDEGVVVRASDLDTASVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
           PSYRGGIVFWAD VG  +VY SLKKWSQ +G+F+KPS+FLEERAT GIPL
Sbjct: 661 PSYRGGIVFWADLVGPKHVYDSLKKWSQRFGDFYKPSKFLEERATGGIPL 710

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445200|ref|XP_002284283.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Vitis vinifera] gi|297738804|emb|CBI28049.3| unnamed protein product [Vitis vinifera]

 Score = 1192 bits (3084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/724 (79%), Positives = 651/724 (89%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+   VTMEVGNDGVA+IT+ NPPVNALA+ I+AGLK+K+ EA  R+DVKAIV+TG GGR
Sbjct: 1   MSKAEVTMEVGNDGVAVITMSNPPVNALALAIIAGLKEKYAEAMRRNDVKAIVVTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH   D+S +PD S++L+VN +ED KKP VAAVEGLALGGGLE+AM C
Sbjct: 61  FSGGFDINVFQKVHKTADISHLPDASIDLLVNTVEDAKKPSVAAVEGLALGGGLEVAMAC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAPKTQLGLPEL+LGV+PGFGGTQRLPRLVGLSKAIEMM LSKSI+SEEG+KLGL+
Sbjct: 121 HARIAAPKTQLGLPELSLGVMPGFGGTQRLPRLVGLSKAIEMMRLSKSISSEEGYKLGLV 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELLKVSR WALDI  +RKPW+RSLH+T+KLGS+SEA ++LK++R QA+KT P+
Sbjct: 181 DAIVSSEELLKVSRRWALDIVDKRKPWVRSLHQTEKLGSVSEALDILKISRQQARKTVPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQACLDVIEEGIVHGGYSG+LKE KVF +LV+ DT++GL+HVFFAQRATSKVPNVTD
Sbjct: 241 LPQHQACLDVIEEGIVHGGYSGLLKETKVFNKLVLSDTAKGLIHVFFAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+KVAVIGGGLMGSGIATA I +NIYVVLKEVNSEYLLKGIKTIEANVRGLVT
Sbjct: 301 IGLKPRNVKKVAVIGGGLMGSGIATALITSNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKA  AL MLKGVLDYSEFKD+DMVIEAVIE++ LKQKIFSE+EK C PHCILA
Sbjct: 361 KGKLTQDKARKALSMLKGVLDYSEFKDIDMVIEAVIENISLKQKIFSEIEKICSPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAHVMPLLE+VRTE+TSAQVILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHVMPLLEVVRTEKTSAQVILDLMTVGKAIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K+PVVVG+CTGFAVNR FFPY+Q A  LV+LGVD FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KIPVVVGSCTGFAVNRTFFPYAQGAHFLVNLGVDPFRIDWVISNFGLPMGPFQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AF  R+F+SPLV+LLLK+GRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVAVAVGKEFATAFQGRTFESPLVNLLLKNGRNGKQNGKGYYIYEKGSKPRPDPSVLPII 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RRL+NIMPGGKPISV  +EI+EMILFPVVNE+CRVL+EG+VVRASDLD  SVLGMSF
Sbjct: 601 EESRRLANIMPGGKPISVANQEILEMILFPVVNEACRVLDEGVVVRASDLDITSVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           PSYRGGIVFWAD VG  Y+YT LKKWS +YG FFKPS +LE+RATKGIPLSAP S+S  S
Sbjct: 661 PSYRGGIVFWADEVGPYYIYTCLKKWSAMYGTFFKPSSYLEQRATKGIPLSAPASASPAS 720

Query: 721 RARL 724
            +RL
Sbjct: 721 NSRL 724

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546439|ref|XP_002514279.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223546735|gb|EEF48233.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

 Score = 1189 bits (3077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/724 (80%), Positives = 651/724 (89%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+I++ NPPVNALA+PI+ GLK+KF EA  R DV+AIVLTG  GR
Sbjct: 1   MAKPHVTMEVGNDGVAVISMSNPPVNALAVPIIMGLKEKFTEAARRKDVQAIVLTGKNGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S++PDVSV+LVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDASILPDVSVDLVVNAIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARI APKTQLGLPEL+LG+IPGFGGTQRLPRLVGL KAI+MML SK I SEEG KLGL+
Sbjct: 121 HARIVAPKTQLGLPELSLGIIPGFGGTQRLPRLVGLPKAIQMMLTSKPIMSEEGKKLGLV 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           D +V+S+ELLKVSR WALDI  RRKPW+RSLH TDKLGSLSEA E+LK AR QAKKTAPN
Sbjct: 181 DVIVSSQELLKVSRQWALDIKERRKPWMRSLHMTDKLGSLSEALELLKAARQQAKKTAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           MPQHQACLDVIE+G+VHGGYSGVLKEAKVFKELV+ DT++ L+HVFFAQR TSKVPNV+D
Sbjct: 241 MPQHQACLDVIEDGVVHGGYSGVLKEAKVFKELVISDTAKSLIHVFFAQRTTSKVPNVSD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR ++KVAVIGGGLMGSGI TA I + IYVVLKE+NSEYLLKGIK +EANVRGLVT
Sbjct: 301 IGLKPRQIKKVAVIGGGLMGSGIITALITSGIYVVLKEINSEYLLKGIKMVEANVRGLVT 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKL+ DKA+ AL MLKGVLDYS+F+DVDMVIEAVIES+PLKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKLSPDKADKALSMLKGVLDYSDFRDVDMVIEAVIESIPLKQKIFSEIEKACPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VG+KTS+QD IIGAHFFSPAH+MPLLEIVRT++TS Q ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGKKTSAQDCIIGAHFFSPAHIMPLLEIVRTDKTSPQAILDLMTVGKSIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KV VVVGNCTGFAVNR FFPY+Q A LLV+LGVDVFRID  I +FGLP+GP QL DLAGY
Sbjct: 481 KVSVVVGNCTGFAVNRTFFPYAQGAHLLVNLGVDVFRIDRVICNFGLPMGPLQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AFPDR+F+SPLVDLL+KSGRNGK NGKG Y YEKGSKPKPDPSV+PII
Sbjct: 541 GVAVAVGKEFATAFPDRTFKSPLVDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVIPII 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           +E +RL+NIMP GKPIS++++EIVEMI FP+VNE+CRVLEEG+VVRASDLD ASVLGMSF
Sbjct: 601 QESQRLTNIMPNGKPISISDQEIVEMIFFPIVNEACRVLEEGVVVRASDLDIASVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           PSYRGGIVFWAD VG  ++YTSLKKWS LYGNF+KPSRFLEERA KG+PLSAPVSSS  S
Sbjct: 661 PSYRGGIVFWADTVGPKHIYTSLKKWSLLYGNFYKPSRFLEERALKGMPLSAPVSSSPGS 720

Query: 721 RARL 724
           R+R+
Sbjct: 721 RSRM 724

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315419009|gb|ADU15551.1| MFP [Gossypium hirsutum]

 Score = 1186 bits (3067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/725 (81%), Positives = 657/725 (90%), Gaps = 5/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+  +VTMEVGNDGVA+IT+ NPPVNALAIPI+ GLK+KF EAT RDDVKAIVLTG GGR
Sbjct: 1   MSQSKVTMEVGNDGVAVITISNPPVNALAIPIIDGLKEKFAEATRRDDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF KVHG GDVS+MPDVSV+LV N +EDCKKPIVAAVEGLALGGGLE AMGC
Sbjct: 61  FSGGFDINVFTKVHGTGDVSIMPDVSVDLVTNAVEDCKKPIVAAVEGLALGGGLEFAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAP+TQLGLPEL+LGVIPGFGGTQRLPRLVGLSKAIEMML SK I SEEG KLGLI
Sbjct: 121 HARIAAPRTQLGLPELSLGVIPGFGGTQRLPRLVGLSKAIEMMLSSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S+ELLKVS  WALD+A RRKPW+RSLHRTDK+GSLSEAREVL++ARLQAKKTAPN
Sbjct: 181 DALVPSKELLKVSCAWALDMAERRKPWLRSLHRTDKIGSLSEAREVLRMARLQAKKTAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQHQ CLDVIEEGIVHGGYSGVLKEAKVFKE+V+ DTSRGLVHVF AQRATSKVPNVTD
Sbjct: 241 LPQHQVCLDVIEEGIVHGGYSGVLKEAKVFKEIVLSDTSRGLVHVFLAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           +GLKPR V+KVA+IGGGLMGSGIATA I+NNI+VVLKEVNSEYLLKGIKT+EANVRGL  
Sbjct: 301 VGLKPRQVKKVAIIGGGLMGSGIATALIVNNIFVVLKEVNSEYLLKGIKTVEANVRGLAN 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGK+T+DKA  AL MLKGVLDYSEFKDVDMVIEAV+E+V LKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKMTKDKAEKALSMLKGVLDYSEFKDVDMVIEAVVENVALKQKIFSEIEKACPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN++GEK +SQDR++GAHFFSPAH+MPLLE VRT++ S Q+ILDLMTVGK+IK
Sbjct: 421 TNTSTIDLNLIGEKMNSQDRLVGAHFFSPAHLMPLLETVRTQKASPQIILDLMTVGKVIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAG 539
           KVPVVVGNCTGFAVNR FFPY+Q   LLVSLGV D +RID  I +FG P+GPFQL DLAG
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYTQGPHLLVSLGVDDAYRIDRVICNFGFPLGPFQLQDLAG 540

Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 599
           YGVA A  +E+ KAF DR F+SPL++LL K GRNGK NGKG Y YEKGSKPKPDPSVL I
Sbjct: 541 YGVAFAVGQEYAKAFSDRIFKSPLLELLAKDGRNGKNNGKGYYIYEKGSKPKPDPSVLSI 600

Query: 600 IEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 659
           IEE RRL+NIMPGGKPISVT++E++EMILFPVVNE+CRVL+EG+VVRASDLD ASVLGMS
Sbjct: 601 IEESRRLTNIMPGGKPISVTDREVLEMILFPVVNEACRVLDEGVVVRASDLDVASVLGMS 660

Query: 660 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 719
           FPSYRGGIVFWAD VGAN+VY +LKKWS   GN +KPS+FLEERA KGIPLSAP +SS++
Sbjct: 661 FPSYRGGIVFWADMVGANHVYRNLKKWS---GN-YKPSKFLEERAMKGIPLSAPATSSAS 716

Query: 720 SRARL 724
           +++RL
Sbjct: 717 TKSRL 721

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406365505|gb|AFS41246.1| cinnamoyl-CoA hydratase-dehydrogenase [Petunia x hybrida]

 Score = 1175 bits (3040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/708 (81%), Positives = 638/708 (90%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA  +VTMEVG DGVA+IT+ NPPVNALAIPI+  LK+K+ EAT R+DVKAIVLTGNGGR
Sbjct: 1   MAQVKVTMEVGTDGVAVITIFNPPVNALAIPIINALKEKWTEATIRNDVKAIVLTGNGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVHG GD+S MPDVSV+LVVN +EDCKKP VAA+EGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHGTGDISQMPDVSVDLVVNTMEDCKKPAVAAIEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIAAP+ QLGLPEL+LGV+PGFGGTQRLPRL+GLSKA+EMM+ SK I SEEG KLGLI
Sbjct: 121 HARIAAPRAQLGLPELSLGVMPGFGGTQRLPRLIGLSKAVEMMMTSKPIMSEEGKKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V S ELLKVSR WALDIA RRKPW+RSLH+TDK+GSLSEAREVLK+AR Q K+TA N
Sbjct: 181 DAIVPSSELLKVSRQWALDIAERRKPWMRSLHKTDKIGSLSEAREVLKVARQQVKQTAKN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           MPQH AC+DVIEEGI+HGGY+GVLKEAKVFK+LV+ +TS+GLVHVFFAQRATSKVPNVTD
Sbjct: 241 MPQHVACIDVIEEGIIHGGYAGVLKEAKVFKDLVLSETSKGLVHVFFAQRATSKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+KVAVIGGGLMGSGIATA  L+N +VVLKE+NSEYL KG+K IEANVRGLV 
Sbjct: 301 IGLKPRTVKKVAVIGGGLMGSGIATALALSNTFVVLKEINSEYLQKGMKAIEANVRGLVA 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           R KL QDKA+ AL M+KG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RKKLPQDKADKALSMVKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKVCPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDLNI+GE T S+DRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDLM VGK IK
Sbjct: 421 SNTSTIDLNIIGENTRSKDRIIGAHFFSPAHIMPLLEIVRTEKTSTQAILDLMAVGKAIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPYSQ A +LV+LGVD +RID+ I SFGLP+GP QL DL GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYSQGAHILVNLGVDAYRIDAQITSFGLPMGPLQLQDLTGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  AF DR+F+SPL+DLL+KSGRNGK NGKG Y YEKGSKP+PD SVLPII
Sbjct: 541 GVAVAVGKEFGSAFSDRTFKSPLIDLLIKSGRNGKNNGKGFYIYEKGSKPRPDLSVLPII 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RRL+NIMPGGKPISVT++EIVEMILFPVVNE+CRVL+EGIVVRASDLD ASVLGMSF
Sbjct: 601 EESRRLTNIMPGGKPISVTDQEIVEMILFPVVNEACRVLDEGIVVRASDLDVASVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708
           PSYRGGIVFWAD VGA ++Y SL KWS+LYGNFFKPSRFLEERATKGI
Sbjct: 661 PSYRGGIVFWADTVGAGHIYKSLTKWSELYGNFFKPSRFLEERATKGI 708

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520511|ref|XP_003528905.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score = 1164 bits (3011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/724 (79%), Positives = 646/724 (89%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGTDGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDSSHLPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG K GLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKFGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELLK SRLWAL+I  RRKPWIRSLHRTDK+GSLSEAR VLK AR Q KKTAP+
Sbjct: 181 DAIVSSEELLKASRLWALEIGERRKPWIRSLHRTDKIGSLSEARAVLKTARQQVKKTAPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ QAC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DTS+GL++VFFAQRA SKVP VTD
Sbjct: 241 LPQQQACVDVIEHGIVHGGYSGVLKEAEVFKQLVISDTSKGLINVFFAQRAISKVPGVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+K AVIGGGLMGSGIATA IL NI V+LKE+NSE+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIRVILKEINSEFLLKGIKTIEANVNGLVR 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+ KA+ AL +LKGVLDYSEFKDVD+VIEAVIE++ LKQ IF +LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLKGVLDYSEFKDVDLVIEAVIENISLKQTIFGDLEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDL++VG+ TSSQDRI GAHFFSPAH+MPLLEI+RT++TSAQVI+DL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQDRIAGAHFFSPAHIMPLLEIIRTDKTSAQVIVDLITVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID  I +FG PIGPFQL DLAGY
Sbjct: 481 KAPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDRLICNFGFPIGPFQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNGK NGKG Y YEKG KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKGGKPKPDPSILPII 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RRL NIMP GKPIS+T++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMSF
Sbjct: 601 EESRRLCNIMPNGKPISITDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           P+YRGGIVFWAD VGAN+++TSLKKW+QLYGNF+KPSR+LEERA KGIPLSAP SS+  S
Sbjct: 661 PNYRGGIVFWADLVGANHIFTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPKS 720

Query: 721 RARL 724
            ARL
Sbjct: 721 MARL 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500631|ref|XP_003620604.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|355495619|gb|AES76822.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula]

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/724 (79%), Positives = 644/724 (88%), Gaps = 2/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA+ +V  EVGNDGVA+IT+ NPPVNALAIPI+ GLK+KFEEA  R+DVKAIVLTG GGR
Sbjct: 1   MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD++L+PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAPK QLGLPELTLG+IPGFGGTQRLPRLVG SKA+EMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+  ELLK+SR WAL+IA +R+PWIRSLH TDKLGS  +AREVL+ AR   KKTAP+
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ QAC+DVIE GI+HGGYSGVL+EA+VFK+LV+ +T++GL+HVFFAQR  SK+P VTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR VRK AVIGGGLMGSGIATA IL NI V+LKEVNSEYL KGIKTIEANVRGLVT
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           R KLTQ KA  AL +LKGVLDY+EFKDVDMVIEAVIE V LKQ IFS+LEK CPPHCILA
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEKICPPHCILA 418

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDLNI+GEK SSQDR+IGAHFFSPAH+MPLLEIVRT +TSAQVILDL+TVGKIIK
Sbjct: 419 SNTSTIDLNIIGEKISSQDRVIGAHFFSPAHIMPLLEIVRTNKTSAQVILDLVTVGKIIK 478

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVNR FFPY+Q A  L +LGVDVFRID  I +FGLP+GPFQL DL+GY
Sbjct: 479 KSPVVVGNCTGFAVNRTFFPYAQGAHFLANLGVDVFRIDRLISNFGLPMGPFQLQDLSGY 538

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  +F  R+F +PL+DLL+KSGRNGK NGKG Y YEKGSKPKPDPSVLPI+
Sbjct: 539 GVAVAVGKEFAGSFAGRTFPTPLLDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVLPIV 598

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RRLSNIMP GKPIS+T++EIVEMILFPVVNE+CRVLEEGIV+RASDLD ASVLGMSF
Sbjct: 599 EESRRLSNIMPNGKPISITDQEIVEMILFPVVNEACRVLEEGIVIRASDLDIASVLGMSF 658

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           PSYRGGIVFWAD VGA ++Y+SLKKWSQLYGNF+KPSR+LEERATKGIPLSAP SS+ TS
Sbjct: 659 PSYRGGIVFWADLVGAKHIYSSLKKWSQLYGNFYKPSRYLEERATKGIPLSAPASSNPTS 718

Query: 721 RARL 724
           +ARL
Sbjct: 719 KARL 722

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443155|ref|XP_004139346.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/724 (75%), Positives = 632/724 (87%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF+QR  SKVPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFSQRLISKVPNVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 301 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 361 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 421 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 541 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RR++N+MP GKPI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMSF
Sbjct: 601 EETRRIANLMPSGKPIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           PSYRGG++FW D VG  +VY SLKKWS+ YG+FFKPS++LEERA KGIPLS  +S ++ S
Sbjct: 661 PSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAISENAAS 720

Query: 721 RARL 724
           R++L
Sbjct: 721 RSKL 724

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531273|ref|XP_003534202.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/724 (78%), Positives = 645/724 (89%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAV GLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG KLGLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DA+V+SEELL  SRLWAL+I  R KPW+RSLHRTDK+GSLSEAREVL+ AR Q KKT P+
Sbjct: 181 DAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPH 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
           +PQ  AC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DT++GL++VFF+QRA SKVP VTD
Sbjct: 241 LPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTD 300

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
           IGLKPR V+K AVIGGGLMGSGIATA IL NI+V+LKE+N E+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVR 360

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           RGKLT+ KA+ AL +L+GVLDYSEFKDVD+VIEAVIE++ LKQ IFS+LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILA 420

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           +NTSTIDL++VG+ TSSQ+RI GAHFFSPAH+MPLLEI+RT++TSAQVILDL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIK 480

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID+ IR+FG PIGPFQL DLAGY
Sbjct: 481 KTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGY 540

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNGK NGKG Y YEK  KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKAGKPKPDPSILPII 600

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RRL NIMP GKPISVT++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMSF
Sbjct: 601 EESRRLCNIMPNGKPISVTDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSF 660

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           P+YRGGIVFWAD VGAN++YTSLKKW+QLYGNF+KPSR+LEERA KGIPLSAP SS+  S
Sbjct: 661 PNYRGGIVFWADLVGANHIYTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPKS 720

Query: 721 RARL 724
            ARL
Sbjct: 721 MARL 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515444|ref|XP_004164759.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score = 1134 bits (2934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/724 (75%), Positives = 627/724 (86%), Gaps = 5/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF       VPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFPS-----VPNVTD 295

Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 296 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 355

Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 356 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 415

Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 416 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 475

Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 476 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 535

Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 536 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 595

Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
           EE RR++N+MP GKPI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMSF
Sbjct: 596 EETRRIANLMPSGKPIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMSF 655

Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 720
           PSYRGG++FW D VG  +VY SLKKWS+ YG+FFKPS++LEERA KGIPLS  +S ++ S
Sbjct: 656 PSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAISENAAS 715

Query: 721 RARL 724
           R++L
Sbjct: 716 RSKL 719

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
TAIR|locus:2119891	721	AIM1 "ABNORMAL INFLORESCENCE M	0.970	0.975	0.716	1.8e-275
UNIPROTKB|Q8W1L6	726	MFP "Peroxisomal fatty acid be	0.975	0.972	0.669	6.4e-257
UNIPROTKB|Q39659	725	Q39659 "Glyoxysomal fatty acid	0.975	0.973	0.561	7.3e-217
UNIPROTKB|O49809	725	O49809 "Glyoxysomal fatty acid	0.968	0.966	0.562	4.3e-212
TAIR|locus:2077542	725	MFP2 "multifunctional protein	0.969	0.968	0.557	6.3e-211
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.783	0.745	0.317	1.8e-93
TIGR_CMR|SPO_0772	698	SPO_0772 "enoyl-CoA hydratase/	0.925	0.959	0.333	3.4e-93
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.783	0.743	0.307	3.4e-92
RGD|620512	763	Hadha "hydroxyacyl-CoA dehydro	0.784	0.744	0.307	7e-92
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.781	0.741	0.303	1.5e-91

TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 2648 (937.2 bits), Expect = 1.8e-275, P = 1.8e-275
 Identities = 504/703 (71%), Positives = 595/703 (84%)

Query:     6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
             VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct:     7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query:    66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+                M CHAR+A
Sbjct:    67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query:   126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct:   127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query:   186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
               ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct:   187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query:   246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
             AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct:   247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query:   306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
             R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct:   307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query:   366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct:   367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query:   426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
             IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM            
Sbjct:   427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query:   486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
               NC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct:   487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query:   546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
                 + K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct:   547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606

Query:   606 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 665
             L+NIMPGGKPISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYRG
Sbjct:   607 LTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYRG 666

Query:   666 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708
             GIVFWAD VG  Y+Y  LKK S+ YG+FFKPSR+LEERA  G+
Sbjct:   667 GIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGM 709

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2473 (875.6 bits), Expect = 6.4e-257, P = 6.4e-257
 Identities = 473/706 (66%), Positives = 570/706 (80%)

Query:     3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
             A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct:     4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query:    63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
             GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP                 MGCHA
Sbjct:    64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query:   123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
             RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct:   124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query:   183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
             + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct:   184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query:   243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
             QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct:   244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query:   303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
             LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct:   304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query:   363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
              LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct:   364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query:   423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXX 482
             TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+T        
Sbjct:   424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query:   483 XXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
                  NCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct:   484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query:   543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 602
             A A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV  +I+E
Sbjct:   544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603

Query:   603 CRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPS 662
              RR +  MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP 
Sbjct:   604 YRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPK 663

Query:   663 YRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708
             +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +
Sbjct:   664 FRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSL 709

GO:0003729 "mRNA binding" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=NAS

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)]

 Score = 2095 (742.5 bits), Expect = 7.3e-217, P = 7.3e-217
 Identities = 397/707 (56%), Positives = 520/707 (73%)

Query:     2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
             A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct:     5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query:    62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
             SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP                 M C
Sbjct:    65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query:   121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             HARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct:   125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query:   181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
             DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct:   185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query:   241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
             +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct:   245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query:   301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
             +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct:   305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query:   361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
             +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct:   365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query:   421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXX 480
             TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+       
Sbjct:   425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query:   481 XXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
                    NCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct:   485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query:   541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
             GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K  P+P +   I
Sbjct:   545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604

Query:   601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
             E+ R  S +    K   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM F
Sbjct:   605 EKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGF 664

Query:   661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
             PSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G
Sbjct:   665 PSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQG 711

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IDA

GO:0009514 "glyoxysome" evidence=NAS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)]

 Score = 2050 (726.7 bits), Expect = 4.3e-212, P = 4.3e-212
 Identities = 395/702 (56%), Positives = 512/702 (72%)

Query:     7 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
             T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFD
Sbjct:    10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFD 69

Query:    67 INVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             I+ F ++  G      +  +S++++ +L+E  KKP                 M CHARI+
Sbjct:    70 ISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARIS 129

Query:   126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV 
Sbjct:   130 APGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVP 189

Query:   186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
               ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM    
Sbjct:   190 PAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHPL 249

Query:   246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
              CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL P
Sbjct:   250 MCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLVP 309

Query:   306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
             R + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK++
Sbjct:   310 RKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKMS 369

Query:   366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             ++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTST
Sbjct:   370 KEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST 429

Query:   426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
             IDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+            
Sbjct:   430 IDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVV 489

Query:   486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
               NCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA A
Sbjct:   490 VGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAIA 549

Query:   546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
             T+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   I++ R 
Sbjct:   550 TATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKARS 609

Query:   606 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 665
             +S   P  K   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD A + GM FP YRG
Sbjct:   610 VSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYRG 669

Query:   666 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
             GI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG
Sbjct:   670 GIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKG 711

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=ISS

TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2039 (722.8 bits), Expect = 6.3e-211, P = 6.3e-211
 Identities = 394/707 (55%), Positives = 512/707 (72%)

Query:     5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
             +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct:     8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query:    65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
             FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct:    68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query:   122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct:   126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query:   182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
             AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct:   186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query:   242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                  CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct:   246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query:   302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
             GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct:   306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query:   362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
             G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct:   366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query:   422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
             NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct:   426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query:   482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
                   NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct:   486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query:   542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
             VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct:   546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605

Query:   602 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 661
             + R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM FP
Sbjct:   606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665

Query:   662 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708
              YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+
Sbjct:   666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGV 712

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IEP;RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 716 (257.1 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
 Identities = 190/599 (31%), Positives = 299/599 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG PE+ LG++PG GGTQRLP++VGL  A +MML  ++I +++  K+GL+  +V   
Sbjct:   164 KTVLGTPEVMLGLLPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADKAKKMGLVHQLVDPL 223

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRS---LHRT-DKLGSLSEARE-VLKL 229
                       T E L +V+  +A  +AA++    +    + +  D +  LS  R+ + K 
Sbjct:   224 GPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTLEKKKGLMQKVQDFVMGLSLVRQQIYKT 283

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                +  K +  + P     ++ I+ GI  G  +G L EA+ F +L M   SR L+ ++  
Sbjct:   284 VHGKVMKQSKGLYPAPLKIIECIQTGIEKGNAAGYLAEAQNFGQLAMSSESRALIGLYHG 343

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q A  K       G   R V+ +A++G GLMG+GIA   I   +  +LK+   E L +G 
Sbjct:   344 QVACKK----NHFGKPEREVKNLAILGAGLMGAGIAQVTIDKGVATILKDTTLEGLARGE 399

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +     +  LT  + +  +  L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   400 QQVYKGLNDKTKKKSLTTFERDGIMSKLSGQLDYHGFEKADMVIEAVFEDLAIKHKVLKE 459

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   PPHCI ATNTS + +  +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   460 VEAVIPPHCIFATNTSALPIKDIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 519

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P    A  ++  GV   ++DS    FG P
Sbjct:   520 TASAVAIGLKQGKLIVVVGDGPGFYTTRCLAPMLAEAVRILQEGVGPKKLDSLTTGFGFP 579

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTYE 585
             +G   L D  G  VAA  +++  KAF  R F    VD L   ++ G  G+ +GKG Y Y 
Sbjct:   580 VGLATLADEVGIDVAAHVAEDLGKAFGAR-FGGGNVDFLKTMVQKGFKGRKSGKGCYVY- 637

Query:   586 KGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVV 645
              G+K K +  V    EE   L +      P   ++++I   ++   VNE+   L+EGI+ 
Sbjct:   638 -GAKSK-EKKVNSEAEEI--LKSFKLTAPPAVSSDEDIQYRLVSRFVNEAVLCLQEGILA 693

Query:   646 RASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
                  D  +V G+ FP   GG   + D+ GA+ +   +K++ ++YGN F P + L + A
Sbjct:   694 DPIQGDIGAVFGLGFPPCLGGPFRFVDSYGADKLIQKMKRFEEVYGNQFSPCQLLLDHA 752

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 233/698 (33%), Positives = 352/698 (50%)

Query:    15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
             + I+   NPPVNAL   +  GL    + A + +  + +++ G G  F  G DI  F    
Sbjct:    13 IVILAADNPPVNALGHAVRQGLAVGLDRAEA-EGARGVLIYGTGRTFFAGADIREF---- 67

Query:    75 GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
               G     P +  EL  N IE     +                +  H RIA P+ ++GLP
Sbjct:    68 --GKPPKEPHLP-ELC-NRIEASPLLVVSALHGTALGGGLEVALATHYRIAVPQAKVGLP 123

Query:   135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-LKVS 193
             E+ LG++PG GGTQRLPR+ G+  A++M+   + + ++E  +LG+ID V   E   + +S
Sbjct:   124 EVHLGILPGAGGTQRLPRVAGVEAALDMITTGRHVRADEALRLGVIDRVAEGEPREIGLS 183

Query:   194 RLWAL-DIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
              L  L D  A R+P +  +     +   +    VL+  R Q            AC     
Sbjct:   184 YLRELLDEGAPRRP-VGEMPAPAPVDFDAIYAAVLRKGRGQLSPATAVRAVQAACE---A 239

Query:   253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVA 312
             E       +G+ +E ++F EL+  D   GL+H FFA RA  K+P +   G+ PR +  + 
Sbjct:   240 ESFA----AGLKRERELFMELMNSDQREGLIHAFFADRAVGKLPELE--GVAPRPLAAIG 293

Query:   313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN- 371
             VIGGG MG+GIATA +L+ + V + E+  E        IE N+ G + RGKLT  + +N 
Sbjct:   294 VIGGGTMGAGIATAALLSGLSVTMLEMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNL 353

Query:   372 ALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431
               K L   +DY    D D+VIEAV E + +K+++F++L+  C P  +LA+NTS +D+N +
Sbjct:   354 TTKALTLAIDYDALADADLVIEAVFEDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQI 413

Query:   432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTG 491
                TS    ++G HFFSPAHVM LLE+V  ++T+  V                    C G
Sbjct:   414 AAVTSRPQDVLGLHFFSPAHVMKLLEVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDG 473

Query:   492 FAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSK-EF 550
             F  NR    Y   A  ++  G   ++ID A+  FG  +GPF + DLAG  +  A  K + 
Sbjct:   474 FIGNRILSVYRTCADHMILDGASPYQIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKR 533

Query:   551 DKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPK-PDPSVLPIIEECRRLSNI 609
              +    R+  S   D L ++G  G+  GKG Y Y  G+K + P+P VLP+IE  R    I
Sbjct:   534 AEGLDPRARDSAYADKLCEAGHFGQKTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGI 593

Query:   610 MPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVF 669
              P     + ++ EIV   +  +VNE+ +V+ EGI  R  D+D   + G  FP YRGG + 
Sbjct:   594 TPR----AFSKDEIVRRYMAAMVNEAAKVVGEGIARRPLDVDVTLLYGYGFPRYRGGPLK 649

Query:   670 WADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
             WAD  G   +   +K+W+     F++P+  LE+   +G
Sbjct:   650 WADMQGLPELLADIKRWAAEDAYFWQPAPLLEQLVAEG 687

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 720 (258.5 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 184/599 (30%), Positives = 300/599 (50%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG+PE+ LG++PG GGTQRLP++VG+  A +MML  ++I ++   K+GL+D +V   
Sbjct:   166 KTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPL 225

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  +A R+    +S    +KL + +       ++V K 
Sbjct:   226 GPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQQVYKT 285

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + KK    + P     +D ++ G+  G  +G L E++ F EL +   S+ L+ ++  
Sbjct:   286 VEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+++A++G GLMG+GIA   +   +  +LK+     L +G 
Sbjct:   346 QVLCKK----NKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQ 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLGVKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HCI A+NTS + +N +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   462 VESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GVD  ++D+    FG P
Sbjct:   522 TASAVAVGLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLDALTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTYE 585
             +G   L D  G  VA   +++  KAF +R F    V+LL   +  G  G+ +GKG Y Y+
Sbjct:   582 VGAATLADEVGVDVAQHVAEDLGKAFGER-FGGGSVELLKQMVSKGFLGRKSGKGFYIYQ 640

Query:   586 KGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVV 645
             +GSK K   S +  I     L+N+    KP   +++++   ++   VNE+   L+EGI+ 
Sbjct:   641 EGSKNKSLNSEMDNI-----LANLRLPAKPEVSSDEDVQYRVITRFVNEAVLCLQEGILA 695

Query:   646 RASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
               ++ D  +V G+ FP   GG   + D  GA  V   L+K+   YG  F P + L + A
Sbjct:   696 TPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLLDHA 754

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

RGD|620512 Hadha "hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 716 (257.1 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
 Identities = 184/598 (30%), Positives = 296/598 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
             KT LG+PE+ LG++PG GGTQRLP++VG+  A +MML  ++I ++   K+GL+D +V   
Sbjct:   166 KTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVDPL 225

Query:   185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
                       T E L +V+  +A  +A R+    +S    +KL S +       ++V K 
Sbjct:   226 GPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLMEKLTSYAMTIPFVRQQVYKT 285

Query:   230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                + KK    + P     +D ++ G+  G  +G L E++ F EL +   S+ L+ ++  
Sbjct:   286 VEEKVKKQTKGLYPAPLKIIDAVKTGLEQGNDAGYLAESEKFGELALTKESKALMGLYNG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q    K       G   + V+++A++G GLMG+GIA   +   +  +LK+     L +G 
Sbjct:   346 QVLCKK----NKFGAPQKTVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQ 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +   V +  LT  + ++    L G LDY  F+  DMVIEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLAVKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   P HCI A+NTS + +N +   +   +++IG H+FSP   M LLEI+ T++TS   
Sbjct:   462 VESVTPEHCIFASNTSALPINQIAAVSQRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P       ++  GVD  ++D+    FG P
Sbjct:   522 TASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDALTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEK 586
             +G   L D  G  VA   +++  KAF +R       L+ L++  G  G+ +GKG Y Y+ 
Sbjct:   582 VGAATLADEVGIDVAQHVAEDLGKAFGERFGGGSVELLKLMVSKGFLGRKSGKGFYIYQS 641

Query:   587 GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVR 646
             GSK K   S +  I     L N+    KP   ++++I   ++   VNE+   L+EGI+  
Sbjct:   642 GSKNKNLNSEIDNI-----LVNLRLPAKPEVSSDEDIQYRVITRFVNEAVLCLQEGILAT 696

Query:   647 ASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
               + D  +V G+ FP   GG   + D  GA  V   L+K+   YG  F P + L + A
Sbjct:   697 PEEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLRDLA 754

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IMP;IDA

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO;IDA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IDA;TAS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 701 (251.8 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
 Identities = 182/600 (30%), Positives = 299/600 (49%)

Query:   128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-- 185
             KT LG PE+ LG++PG GGTQRLP+++GL  A ++ML  +SI +++  K+GL+  +V   
Sbjct:   166 KTVLGCPEVMLGLLPGAGGTQRLPKMLGLPSAFDVMLTGRSIRADKAKKMGLVHQLVDTL 225

Query:   186 -----SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK---LARLQAKKT 237
                  S E   +  L  + + A R    + +  T + G + + ++ +      R Q   T
Sbjct:   226 GPGLKSPEERTIEYLEEVAVEAARGLAQKKITLTKEKGWMQKIQDYVMSYPFVRQQIYNT 285

Query:   238 APN--MPQ----HQACLDVIEE---GIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
                  M Q    + A L +IE    G+  G  +G L E++ F +L M + S+ L+ ++  
Sbjct:   286 VEKKVMKQTKGLYPAPLKIIESVKAGVEQGPTTGYLVESQQFGKLAMTNESKALIGLYHG 345

Query:   289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
             Q A  K       G   + V+ +A++G GLMG+GIA   +   I+ +LK+   + L +G 
Sbjct:   346 QVACKK----NRFGTPEKEVKTLAILGAGLMGAGIAQVTVDKGIHTILKDTTVDGLSRGE 401

Query:   349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
             + +   +     +  LT  + +  L  L G LDY+ F   DM+IEAV E + +K K+  E
Sbjct:   402 QQVFKGLNDKTKKKSLTSFERDTFLSNLTGQLDYNGFNKADMIIEAVFEDLSIKHKVLKE 461

Query:   409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
             +E   PPHCI ATNTS + +  +   +   D+++G H+FSP   M LLEI+ T++TS   
Sbjct:   462 VEAVIPPHCIFATNTSALPIKDIAAVSKRPDKVVGMHYFSPVDKMQLLEIITTDKTSKDT 521

Query:   469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
                 +              +  GF   R   P    A  ++  G D  ++DS    FG P
Sbjct:   522 TASAVAVGLKQGKVIIVVGDGPGFYTTRCLAPMLAEAVRILQEGTDPKKLDSLTTGFGFP 581

Query:   529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTYE 585
             +G   L D  G  VAA  +++  KAF  R F    V+ L   ++ G  G+ +GKG Y Y+
Sbjct:   582 VGAATLADEVGIDVAAHVAEDLGKAFGSR-FGGGNVEFLKSMVEKGFKGRKSGKGCYVYQ 640

Query:   586 KGSKPKP-DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIV 644
              G K +  +   L I+E  +   N       IS ++ +I   ++   VNE+   L+EGI+
Sbjct:   641 PGLKRRDVNTEALEILEAYKLTPNAA-----IS-SDSDIQYRLVSRFVNEAVLCLQEGIL 694

Query:   645 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
                 + D  +V G+ FP   GG   + D+ GA+ +   ++++ +++GN F P + L + A
Sbjct:   695 ANPVEGDIGAVFGLGFPPCLGGPFRFVDSFGADKLVEKMRRFEEVFGNQFTPCQLLLDHA 754

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1X9L4	FADJ_ECODH	1, ., 1, ., 1, ., 3, 5	0.3225	0.9433	0.9565	yes	no
B2TWV4	FADJ_SHIB3	1, ., 1, ., 1, ., 3, 5	0.3272	0.9406	0.9537	yes	no
Q32DJ4	FADJ_SHIDS	1, ., 1, ., 1, ., 3, 5	0.3244	0.9406	0.9537	yes	no
A4WCW6	FADJ_ENT38	1, ., 1, ., 1, ., 3, 5	0.3253	0.9392	0.9510	yes	no
B5RCL3	FADJ_SALG2	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
B5XVW2	FADJ_KLEP3	1, ., 1, ., 1, ., 3, 5	0.3328	0.9392	0.9523	yes	no
Q3YZM2	FADJ_SHISS	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
Q9DBM2	ECHP_MOUSE	1, ., 1, ., 1, ., 3, 5	0.3281	0.9309	0.9387	yes	no
O49809	MFPA_BRANA	1, ., 1, ., 1, ., 3, 5	0.5930	0.9889	0.9875	N/A	no
B5R3R9	FADJ_SALEP	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
B5EZR9	FADJ_SALA4	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
B7MY16	FADJ_ECO81	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
Q39659	MFPA_CUCSA	1, ., 1, ., 1, ., 3, 5	0.5960	0.9834	0.9820	N/A	no
Q83QQ0	FADJ_SHIFL	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
Q1R972	FADJ_ECOUT	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
B5BBA1	FADJ_SALPK	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
A1ADI8	FADJ_ECOK1	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
Q31YB7	FADJ_SHIBS	1, ., 1, ., 1, ., 3, 5	0.3244	0.9406	0.9537	yes	no
Q9ZPI6	AIM1_ARATH	1, ., 1, ., 1, ., 3, 5	0.7482	0.9875	0.9916	yes	no
Q8FFG4	FADJ_ECOL6	1, ., 1, ., 1, ., 3, 5	0.3300	0.9406	0.9537	yes	no
B5FPN1	FADJ_SALDC	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
B7M6M2	FADJ_ECO8A	1, ., 1, ., 1, ., 3, 5	0.3244	0.9406	0.9537	yes	no
A8A2L0	FADJ_ECOHS	1, ., 1, ., 1, ., 3, 5	0.3324	0.9392	0.9523	yes	no
Q6NYL3	ECHP_DANRE	1, ., 1, ., 1, ., 3, 5	0.3614	0.9350	0.9428	yes	no
Q5PCX6	FADJ_SALPA	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
P07896	ECHP_RAT	1, ., 1, ., 1, ., 3, 5	0.3388	0.9267	0.9293	yes	no
B6I6Q4	FADJ_ECOSE	1, ., 1, ., 1, ., 3, 5	0.3272	0.9406	0.9537	yes	no
B5YXY4	FADJ_ECO5E	1, ., 1, ., 1, ., 3, 5	0.3272	0.9406	0.9537	yes	no
C4ZVN2	FADJ_ECOBW	1, ., 1, ., 1, ., 3, 5	0.3225	0.9433	0.9565	yes	no
B1LME7	FADJ_ECOSM	1, ., 1, ., 1, ., 3, 5	0.3226	0.9461	0.9593	yes	no
B7NP24	FADJ_ECO7I	1, ., 1, ., 1, ., 3, 5	0.3244	0.9406	0.9537	yes	no
Q5R5M8	ECHP_PONAB	1, ., 1, ., 1, ., 3, 5	0.3383	0.9309	0.9322	yes	no
B7UFZ8	FADJ_ECO27	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
B7LLD0	FADJ_ESCF3	1, ., 1, ., 1, ., 3, 5	0.3389	0.9419	0.9551	yes	no
B4TCA8	FADJ_SALHS	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
Q0T2E6	FADJ_SHIF8	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
B1IXA5	FADJ_ECOLC	1, ., 1, ., 1, ., 3, 5	0.3244	0.9406	0.9537	yes	no
B7N5V2	FADJ_ECOLU	1, ., 1, ., 1, ., 3, 5	0.3239	0.9433	0.9565	yes	no
Q08426	ECHP_HUMAN	1, ., 1, ., 1, ., 3, 5	0.3370	0.9309	0.9322	yes	no
Q0TFA6	FADJ_ECOL5	1, ., 1, ., 1, ., 3, 5	0.3267	0.9323	0.9453	yes	no
Q8W1L6	MFP_ORYSJ	1, ., 1, ., 1, ., 3, 5	0.6998	0.9972	0.9944	yes	no
B4SZR0	FADJ_SALNS	1, ., 1, ., 1, ., 3, 5	0.3248	0.9309	0.9426	yes	no
B7MGV7	FADJ_ECO45	1, ., 1, ., 1, ., 3, 5	0.3258	0.9406	0.9537	yes	no
B7LBJ5	FADJ_ECO55	1, ., 1, ., 1, ., 3, 5	0.3230	0.9406	0.9537	yes	no
A6TC19	FADJ_KLEP7	1, ., 1, ., 1, ., 3, 5	0.3305	0.9406	0.9537	yes	no
A7ZPF8	FADJ_ECO24	1, ., 1, ., 1, ., 3, 5	0.3272	0.9406	0.9537	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	5.1.2.3	0.979
3rd Layer	1.1.1.35	0.979
4th Layer	4.2.1.17	0.979
3rd Layer	5.3.3.8	0.979
3rd Layer	4.2.1	0.983
3rd Layer	5.1.2	0.983
3rd Layer	5.3.3	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XVIII0682	SubName- Full=Putative uncharacterized protein; (727 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•	•		0.907
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•	•		0.906
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•	•		0.905
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•	•		0.903
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•	•		0.902
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•	•		0.901
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•	•		0.901
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	eugene3.07970004	Predicted protein (395 aa)	•					•	•		0.482
	fgenesh4_pg.C_scaffold_17829000001	Predicted protein (327 aa)	•					•	•		0.467

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	724
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-162
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-134
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-126
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-123
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-122
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	2e-85
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	8e-64
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	1e-63
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-59
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	2e-59
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	7e-55
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	8e-53
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	2e-51
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	2e-51
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	2e-49
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-46
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	2e-45
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	2e-45
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	2e-43
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	9e-41
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	3e-40
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	1e-39
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	5e-39
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	7e-39
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-34
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	7e-34
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	4e-33
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	4e-33
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	1e-31
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	1e-31
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	3e-30
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	1e-29
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	6e-27
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	1e-26
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	2e-26
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	4e-26
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-26
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-25
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	1e-25
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	1e-25
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	6e-25
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	5e-24
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	6e-24
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	6e-24
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	8e-24
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-23
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	3e-23
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	2e-22
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	3e-22
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	6e-22
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	7e-22
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	2e-21
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	4e-21
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	4e-21
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	6e-21
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	4e-20
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	5e-20
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	7e-20
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	7e-20
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	9e-20
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-19
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	1e-19
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-17
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	2e-17
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	5e-17
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	1e-16
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	3e-16
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	3e-16
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	5e-16
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	5e-16
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	6e-16
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-15
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	2e-15
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-15
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	5e-15
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	6e-15
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	7e-15
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	8e-15
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	3e-14
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-14
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	7e-14
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	3e-13
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	6e-13
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	1e-12
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-12
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	2e-12
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	6e-12
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	5e-10
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-09
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	1e-09
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	3e-09
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	9e-09
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	2e-08
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	5e-08
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	7e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	5e-05
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	5e-05
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	3e-04
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	3e-04
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	0.001
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	0.002
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	0.004

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  485 bits (1251), Expect = e-162
 Identities = 254/725 (35%), Positives = 374/725 (51%), Gaps = 37/725 (5%)

Query: 1   MAAPRV-TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-G 56
           M      T+ V  D +A+IT+  P   +N L       ++   ++     ++K +V   G
Sbjct: 1   MEMASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISG 60

Query: 57  NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
               F  G DIN+      A +   +     + +   IE    P+VAA+ G  LGGGLEL
Sbjct: 61  KPDNFIAGADINMLAACKTAQEAEALARQGQQ-LFAEIEALPIPVVAAIHGACLGGGLEL 119

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           A+ CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L  K + +++ 
Sbjct: 120 ALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179

Query: 175 WKLGLIDAVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL-KLAR 231
            KLGL+D VV    LL+V+   A     A R  P    L   + LG     R +L K AR
Sbjct: 180 LKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLG-----RALLFKQAR 234

Query: 232 LQA-KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290
            +   KT  N P  +  LDV+  G+  G  SG   EA+ F EL M   S  L  +FFA  
Sbjct: 235 KKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294

Query: 291 ATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIK 349
              K         KPR V KV V+GGGLMG GIA        + V +K++N + +   +K
Sbjct: 295 EMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALK 351

Query: 350 TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSEL 409
                +   V R  L   + +  + ++ G  DY  FK  D+VIEAV E + LKQ++ +E+
Sbjct: 352 YSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEV 411

Query: 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469
           E+ C PH I A+NTS++ +  +    +  +++IG H+FSP   MPL+E++   +TSA+ I
Sbjct: 412 EQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471

Query: 470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLP 528
              + + K   K P+VV +  GF VNR   PY +++ARLL+  G  +  ID+A+  FG P
Sbjct: 472 ATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPIEHIDAALVKFGFP 530

Query: 529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTYEKG 587
           +GP  LLD  G  V        + A  +R F +P   D LL   R G+ NG+G Y Y + 
Sbjct: 531 VGPITLLDEVGIDVGTKIIPILEAALGER-FSAPAAFDKLLNDDRKGRKNGRGFYLYGQK 589

Query: 588 SKPK---PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIV 644
            K      D SV P++        I P  +   ++  EI E  +  ++NE+ R L+EGI+
Sbjct: 590 GKKSKKQVDESVYPLL-------GITPQSR---LSANEIAERCVMLMLNEAVRCLDEGII 639

Query: 645 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
             A D D  +V G+ FP + GG   + D++GA  V   L++ +  YG+ F P   L E A
Sbjct: 640 RSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMA 699

Query: 705 TKGIP 709
            +G  
Sbjct: 700 ERGES 704

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  411 bits (1057), Expect = e-134
 Identities = 244/715 (34%), Positives = 366/715 (51%), Gaps = 36/715 (5%)

Query: 7   TMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSG 63
           T+ V  DG+AI+T+      +N L       + +   +      ++ +VL +G    F  
Sbjct: 3   TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIA 62

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DI++      AG+   +      L    +E    P+VAA+ G  LGGGLELA+ CH+R
Sbjct: 63  GADISMLAACQTAGEAKALAQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSR 121

Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           + +   KT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L  K + +++  KLGL+D
Sbjct: 122 VCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181

Query: 182 AVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKT 237
            VV    LL  +   AL      +       L     LG     R +L  + A+  AKKT
Sbjct: 182 DVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLG-----RALLFDQAAKKTAKKT 236

Query: 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
             N P  +  LDV+ +G+  G   G+  EA+ F ELVM   S  L  +FFA     K   
Sbjct: 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETG 296

Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVR 356
                  P  ++KV ++GGGLMG GIA+       I V +K++N + +   +K     + 
Sbjct: 297 SDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLD 353

Query: 357 GLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH 416
             V R  +T  + +N + ++ G  DY  FKDVD+VIEAV E + LK ++  ++E+ C  H
Sbjct: 354 KGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAH 413

Query: 417 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476
            I A+NTS++ +  +    S  + +IG H+FSP   MPL+E++    TS Q I   + + 
Sbjct: 414 TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473

Query: 477 KIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL 535
           K   K P+VV +  GF VNR   PY +++ARLL+  G  V  ID A+  FG P+GP  LL
Sbjct: 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLE-GEPVEHIDKALVKFGFPVGPITLL 532

Query: 536 DLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-DP 594
           D  G  V A  S   +    +R     + D LL   R G+ NGKG Y Y   +K K  D 
Sbjct: 533 DEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDE 592

Query: 595 SVLPIIEECRRLSNIMPGGKPIS--VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 652
           SV  ++        I PG    +  V E+ ++ M+     NE+ R L+EG++    D D 
Sbjct: 593 SVYGLL-------GIKPGVDKEASAVAERCVMLML-----NEAVRCLDEGVIRSPRDGDI 640

Query: 653 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
            ++ G+ FP + GG   + D +GA+ V   L++    YG+ F P + L   A + 
Sbjct: 641 GAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEK 695

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  391 bits (1008), Expect = e-126
 Identities = 239/719 (33%), Positives = 370/719 (51%), Gaps = 47/719 (6%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A +    P  VN L    +A L +  +   ++ D+K ++LT     F  G DI  F 
Sbjct: 15  DGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFL 74

Query: 72  KVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            +  A +  L   +     + N +ED   P VAA+ G ALGGG E  +    R+A+P  +
Sbjct: 75  SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           +GLPE  LG++PGFGGT RLPRL+G   A+E +   K + +E+  K+G +DAVV  E+L 
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194

Query: 191 K--VSRLWA-----LDIAARRKPWIRSLHRTDKLGSLS----EAREVLKLAR-LQAKKTA 238
           +  ++ L       LD  ARR+P         KL  L     EA      A+ + A+K  
Sbjct: 195 EAALALLKQAIAGKLDWKARRQP---------KLEPLKLSKIEAMMSFTTAKGMVAQKAG 245

Query: 239 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
            + P     +  IE      G    L+ EAK F +L   + +R LV +F   +       
Sbjct: 246 KHYPAPMTAVKTIEAAAGL-GRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAK 304

Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG 357
                 KP  V++ AV+G G+MG GIA       + V++K++N + L  G+      +  
Sbjct: 305 KLAKDAKP--VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNK 362

Query: 358 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
            V RGK+   K    L  ++  LDY+ F+ VD+V+EAV+E+  +K  + +E+E+      
Sbjct: 363 QVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDT 422

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
           ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E+TS + I  ++    
Sbjct: 423 ILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYAS 482

Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLD 536
            + K P+VV +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD
Sbjct: 483 KMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLD 542

Query: 537 LAGYGVAAATSKEFDKAFPDR---SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP- 592
           + G   A        + FPDR    ++   +D+L ++ R G+ NGKG Y YE+  K KP 
Sbjct: 543 VVGIDTAHHAQAVMAEGFPDRMKKDYRDA-IDVLFEAKRFGQKNGKGFYRYEEDKKGKPK 601

Query: 593 ---DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 649
              DP+V  ++        ++   +    +++EI+  ++ P++NE  R LEEGIV   ++
Sbjct: 602 KEVDPAVYELLAP------VVQPKR--EFSDEEIIARMMIPMINEVVRCLEEGIVASPAE 653

Query: 650 LDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
            D A V G+ FP +RGG   + D +G ANYV  +  K++ L G  ++    L E A  G
Sbjct: 654 ADMALVYGLGFPPFRGGAFRYLDTLGVANYVALA-DKYAHL-GPLYQVPEGLREMAANG 710

Length = 715

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  384 bits (987), Expect = e-123
 Identities = 245/731 (33%), Positives = 364/731 (49%), Gaps = 38/731 (5%)

Query: 1   MAAPRVTMEVGND-GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNG 58
           MA      EV  D  V  I   N  VN L+  + A  K+   E  + + +K+ VL +G  
Sbjct: 10  MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP 69

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           G F  G DI +      A +V+ +     E+    IE  +KPIVAA+ G  LGGGLELA+
Sbjct: 70  GSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-IEKSQKPIVAAISGSCLGGGLELAL 128

Query: 119 GCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
            CH RIA    KT LGLPE+ LG++PG GGTQRLP+L G+  A++MML  K I ++   K
Sbjct: 129 ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKK 188

Query: 177 LGLIDAVV-------------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223
           +G++D +V             T E L +V+  +A  +A  +    R      K+      
Sbjct: 189 MGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMT 248

Query: 224 -----REVLKLARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD 277
                ++V K A  +  K T    P     LDV+  G   G  +G   E+K F EL M  
Sbjct: 249 NPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTF 308

Query: 278 TSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLK 337
            S+ L+ +F  Q    K       G   R V+ +AV+G GLMG+GIA   +   +  VLK
Sbjct: 309 ESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364

Query: 338 EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397
           +     L +G + +   +   V R K+T  + ++ L  L   LDYS FK+ DMVIEAV E
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424

Query: 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 457
            + LK K+  E+E   PPHCI+A+NTS + +  +   +S  +++IG H+FSP   M LLE
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484

Query: 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR 517
           I+  + TS   +   + VG    KV +VV +  GF   R   P       L+  GVD  +
Sbjct: 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKK 544

Query: 518 IDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-SFQSP-LVDLLLKSGRNGK 575
           +D     FG P+G   L D  G  VA   +++  KAF +R    S  L+  L+K+G  G+
Sbjct: 545 LDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGR 604

Query: 576 ANGKGLYTYEKGSKPKPD--PSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVN 633
            +GKG++ Y++G K           I+ + +     +P    +S  E   + ++    VN
Sbjct: 605 KSGKGIFIYQEGKKGSKKVNSDADEILAQYK-----LPPKAEVSSPEDIQIRLVS-RFVN 658

Query: 634 ESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF 693
           E+   LEEGI+   S+ D  +V G+ FP + GG   + D  GA+ +   ++K++  YG  
Sbjct: 659 EAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQ 718

Query: 694 FKPSRFLEERA 704
           F P + L + A
Sbjct: 719 FTPCQLLLDHA 729

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  381 bits (981), Expect = e-122
 Identities = 230/725 (31%), Positives = 360/725 (49%), Gaps = 35/725 (4%)

Query: 3   APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              + +    DG+A +    P  VN      +A L    +   ++  +K ++LT     F
Sbjct: 5   GKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
             G DI  F  +    D  L+  +     + N +ED   P VAA+ G+ALGGG E  +  
Sbjct: 65  IVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             RIA    ++GLPE  LG++PGFGGT RLPR++G   A+E +   K   +E+  K+G +
Sbjct: 125 DFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAV 184

Query: 181 DAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR-L 232
           DAVVT+++L       LK +    LD  A+R+P +  L    KL  + EA      A+ +
Sbjct: 185 DAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPL----KLSKI-EAMMSFTTAKGM 239

Query: 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292
            A+   P+ P     +  IE+    G    +  EAK F +L     ++ L+ +F   +  
Sbjct: 240 VAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYV 299

Query: 293 SKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352
                  D   K   V++ AV+G G+MG GIA         +V+K++N   L  G+    
Sbjct: 300 KGKAKKADKIAK--DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357

Query: 353 ANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKA 412
             +   V RG++T  K    L  +   L Y+ F +VD+V+EAV+E+  +K  + +E+E+ 
Sbjct: 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417

Query: 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL 472
                ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E++S + I  +
Sbjct: 418 VREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477

Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 531
           +     + K P+VV +C GF VNR  FPY      L+  G D  RID  + + FG P+GP
Sbjct: 478 VAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGP 537

Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 589
             LLD+ G            + FPDR  +     +D L ++ R G+ NGKG Y YE   K
Sbjct: 538 AYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKK 597

Query: 590 PKP----DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVV 645
            KP    D SVL +++            +     ++EI+  ++ P++NE+ R LEEGIV 
Sbjct: 598 GKPKKLVDSSVLELLKPV--------VYEQRDFDDEEIIARMMIPMINETVRCLEEGIVA 649

Query: 646 RASDLDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
            A++ D   V G+ FP +RGG   + D++G AN+V  +L       G  ++ +  L E A
Sbjct: 650 TAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFV--ALADQYAELGALYQVTAKLREMA 707

Query: 705 TKGIP 709
             G  
Sbjct: 708 KNGQS 712

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  271 bits (696), Expect = 2e-85
 Identities = 118/298 (39%), Positives = 177/298 (59%), Gaps = 5/298 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KVAVIG G+MG+GIA    L    VVLK+++ E L + +  IE N+  LV +GKLT++
Sbjct: 3   IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+ AL  +    D +  KD D+VIEAV+E + LK+++F+ELE    P  ILA+NTS++ 
Sbjct: 63  EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  + E     +R IG HFF+P  +MPL+E++R E+TS + +  ++   K I K PVVV 
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR        A  L+  GV     ID+A+R   GLP+GPF+L DL G  V   
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242

Query: 546 TSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE-KGSKPKPDPSVLPII 600
             K  ++   D  +    PL+  L+++GR G+ +GKG Y Y  +  KP P+ +   +I
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGEAIKPLPNEAARCLI 300

Length = 307

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  209 bits (535), Expect = 8e-64
 Identities = 72/180 (40%), Positives = 113/180 (62%)

Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
           KVAVIG G MG+GIA       + VVL +++ E L K    IE ++  LV +G++T++ A
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
           +  L  +    D ++  D D+VIEAV E++ LK+++F+EL+   PP  ILA+NTS++ + 
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
            +   T   +R IG HFF+P  +MPL+E+VR E+TS + +  ++ + K I K PVVV + 
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  212 bits (541), Expect = 1e-63
 Identities = 95/226 (42%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M    V +E   D VA+ITL +PP NAL+  ++  L +  ++    D+V+ +V+ G G  
Sbjct: 1   MKFLSVRVE---DHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRF 57

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FS G DI  F  V  A   + +  +  ++    +E   KP++AA+ G ALGGGLELAM C
Sbjct: 58  FSAGADIKEFTSVTEAEQATELAQLG-QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC 116

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
           H R A    +LGLPEL LG+IPGF GTQRLPR VG +KA+EMML S+ IT  E  K GL+
Sbjct: 117 HIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLV 176

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRS---LHRTDKLGSLSEA 223
           + V   E LL  ++  A  IA +     R+   L +T K  S  E 
Sbjct: 177 NGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEG 222

Length = 257

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  198 bits (506), Expect = 2e-59
 Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA ITL  P   NAL++ ++  L    +EA +  DV+ +VLTG G  F  G D+   
Sbjct: 6   DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKEL 65

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
             +  AG+ +      ++ ++  +    KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 66  AALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAK 125

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            GLPE+ LG++PG GGTQRLPRLVG ++A E++L  + I++EE  +LGL+D VV  EELL
Sbjct: 126 FGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185

Query: 191 KVSRLWALDI 200
             +   A  +
Sbjct: 186 AAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  201 bits (514), Expect = 2e-59
 Identities = 101/282 (35%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
           G++K+ VIG G MG+GIA    +    VV+ +++   + +G+ TI  ++  LV +GK+T+
Sbjct: 2   GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE 61

Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
                AL  + G  D  + KD D+VIEA  E++ LK+KIF++L++   P  ILATNTS++
Sbjct: 62  ADKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121

Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
            +  +   T   D++IG HFF+P  VM L+EI+R   TS      +  + K I K PV V
Sbjct: 122 SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181

Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYGVA 543
            N  GF VNR   P    A  +++ GV     ID  ++  G   PIGP  L DL G    
Sbjct: 182 KNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGPLALADLIGLDTC 240

Query: 544 AATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 584
            A  +   + F D  ++  PL+  ++ +G  G+  G+G Y Y
Sbjct: 241 LAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  189 bits (483), Expect = 7e-55
 Identities = 92/288 (31%), Positives = 153/288 (53%), Gaps = 3/288 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KV V+G G MGSGIA       + V L + +   L +G+ +I +++  LV +GK++Q+
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+  L  ++   +  E +D D +IEA++ES  LK+K+FSEL++ C P  ILA+NTS+I 
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +   T    ++IG HF +P  +M L+EI+R   TS +V      + +   K  V   
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR   P    A   +  GV     ID+ ++     P+GP  L D  G     +
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243

Query: 546 TSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
             K   +   D  ++  PL+   + +GR G+ +G+G+Y Y+   +  P
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291

Length = 295

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  190 bits (483), Expect = 8e-53
 Identities = 107/290 (36%), Positives = 161/290 (55%), Gaps = 5/290 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V  VAVIG G MG+GIA         V+L ++ +E L + I  IEA +  LVT+GKLT +
Sbjct: 5   VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE 64

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +    LK L  V D     D  +VIEA++E++ +K+ +F++LE+ CP   I+A+NTS++ 
Sbjct: 65  ECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +    +  +R+ G HFF+PA VM L+E+V    T+A+V   L        K PV   
Sbjct: 125 ITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184

Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNR   P Y+++ R L         +D+A+R   G P+GPF+L DL G+ V  A
Sbjct: 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFA 244

Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY-EKGSKPKP 592
            T   F+  + DR F  S +   L+ +GR G+ +G G+Y Y E+     P
Sbjct: 245 VTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVP 294

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  178 bits (454), Expect = 2e-51
 Identities = 84/192 (43%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
             GVA+I L  P  VNAL+  ++  L    E+      VKAIVLTG  G FS G DI   
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEM 64

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                A           + + + +ED  KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 65  AAEPLAQQAQFSL--EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            GLPE+ LG+IPG GGTQRLPR++G+S A+EM+L  + I ++E  K+GL+D VV  E+L+
Sbjct: 123 FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLV 182

Query: 191 KVSRLWALDIAA 202
           + +   A  +A 
Sbjct: 183 EEAIELAQRLAD 194

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  179 bits (455), Expect = 2e-51
 Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A+ITL  P   NAL + ++  L +  +EA +  DV+ +VLTG G  FS G D+    
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELL 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                     +     + ++  + D  KP++AAV G ALGGGLELA+ C  RIAA   + 
Sbjct: 73  SPEDGNAAENLMQPGQD-LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELL 190
           GLPE+ LG++PG GGTQRLPRL+G  +A E++L  + I++ E  +LGL+D VV  +EELL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191

Query: 191 KVSRLWALDIAARRK--PWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238
           + +   A  +AA        + L R      L+EA E   LA  +   + 
Sbjct: 192 ERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241

Length = 257

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  180 bits (460), Expect = 2e-49
 Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 4/311 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           +  VAVIG G MG+GIA         V+L +  +         I A +  LV +GKLT +
Sbjct: 7   IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           +A+ AL  L+ V   ++  D D+V+EA++E + +KQ +F++LE    P CILATNTS++ 
Sbjct: 67  QADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +       +R+ G HFF+P  +M L+E+V    T   V   L  + +   K PV   
Sbjct: 127 ITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNRA  PY   A  ++  GV D   ID+ +R + G  +GPF+L+DL G  V  A
Sbjct: 187 DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVNHA 246

Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 603
                + + + +  F+ S +   L+ +GR G+ +G+G Y Y  G+K  P  +  P     
Sbjct: 247 VMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPP 306

Query: 604 RRLSNIMPGGK 614
             +S  + G  
Sbjct: 307 VWVSADVEGDL 317

Length = 507

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  166 bits (422), Expect = 2e-46
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 3/283 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           + K+ V+G G+MG GIA    ++     L ++  E L    + I +     V RGKLT+ 
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 368 KANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
               AL  L   LD      D D+VIEAV E + LK+ +F   +   P  C +ATNTST+
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
               +   T   +R+I  HFF+P H M L+E++R   TS + +     V + + K  VVV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAA 544
               GF  +R        A  ++  GV     ID AIR     P+GP +L DL G     
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240

Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587
              K   +   ++   +PL++  +K+GR G+  G+G+Y Y   
Sbjct: 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283

Length = 288

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  163 bits (415), Expect = 2e-45
 Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 7/284 (2%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
            +++V V+G G MG+GIA       + V++ E   E    G   IE ++   V+RGKLT+
Sbjct: 4   AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE 63

Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP-PHCILATNTST 425
            + + AL  L+   D  +F D  +VIEAV+E   +K +IF+EL+K    P  +LA+NTS+
Sbjct: 64  RERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT-VGKIIKKVPV 484
           I +  +   T    R++G HFF+P  V+PL+E+V T  TS   +         ++ K  V
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183

Query: 485 VVGNCTGFAVNRAFFPYSQSA-RLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
              + +GF VN    PY  SA R++ S       ID A+   G   P+GP +L DL G  
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMV-LGCAHPMGPLRLSDLVGLD 242

Query: 542 VAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 584
              A +    + F +  +  P L+  ++++G  GK +G+G YTY
Sbjct: 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  162 bits (413), Expect = 2e-45
 Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGV  IT+  P   NAL   +   L D  E A +   V+ +VLTG G  FS G DI  F 
Sbjct: 13  DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFP 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           K        L P   V   +  I    KP+VAAV G A+G G+ LA+ C    A+   + 
Sbjct: 73  KAPPKPPDELAP---VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKF 129

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            LP   LG+ P  GG+  LPRL+G ++A EM+LL + +++EE  ++GL++ VV + EL  
Sbjct: 130 SLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDA 189

Query: 192 VSRLWALDIAA 202
            +   A  +AA
Sbjct: 190 EADAQAAKLAA 200

Length = 259

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  158 bits (400), Expect = 2e-43
 Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN---VRGLVTRGKL 364
           ++ + V+G G+MG GIA         V + +V+ E L   ++ IE+    +R LV +GK+
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
           ++D+A   +  ++    Y    D D ++EAV E + LK+K+F+ELE+   P  I+A+NTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
            I +  +      +DR IG H+F+PA VM L+E+VR   TS +     + + K I K+P+
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAG 539
            V +  GF   R    +   A     +G+   + ID   + +FG P+GPF+L+D+ G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239

Length = 291

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  151 bits (383), Expect = 9e-41
 Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 10/284 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++ +A+IG G MGSGIA       + VVL +V    L +    IE    G V        
Sbjct: 4   IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA-LG-VYAPLGIAS 61

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                ++M  G+         D+VIEAV E + LK+ +F+ L+  C P  I ATNTS + 
Sbjct: 62  AGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  + +  +  +R +G HFF+PA V+PL+E+VR ++TS Q +   M + + I K PV+V 
Sbjct: 120 ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVK 179

Query: 488 -NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPI---GPFQLLDLAGYG 541
            +  GF  NR     ++ A  L+  GV     ID  ++ S G+ +   GP +  D+ G  
Sbjct: 180 KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLD 239

Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           V  A +    +   +R+  SPL++  +++G  G  +G+G Y + 
Sbjct: 240 VHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWP 283

Length = 311

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  149 bits (378), Expect = 3e-40
 Identities = 95/292 (32%), Positives = 144/292 (49%), Gaps = 12/292 (4%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           ++KV VIG G MG+GIA    L    V+L +V+++ L  G+ TI  N+   V +GK++++
Sbjct: 4   IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP---PHCILATNTS 424
               AL  +    D  +  D D+VIEA  E   +K+KIF++L   CP   P  ILATNTS
Sbjct: 64  ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQL---CPVLKPEAILATNTS 120

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
           +I +  +   T   +R IG HF +P  VM L+E++R   T              + K   
Sbjct: 121 SISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
           V  +   F VNR   P    A   +  GV  V  ID+A++  G   P+GP +L D  G  
Sbjct: 181 VAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLELADFIGLD 239

Query: 542 VAAATSKEFDKAFPDRSFQS-PLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
              +  +       D  ++  PL+   +++G  G+  G+G Y Y +G  P P
Sbjct: 240 TCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDY-RGEVPVP 290

Length = 292

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  146 bits (371), Expect = 1e-39
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 20/206 (9%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           ++++     V  ITL  P   NAL++ ++  L++   +     +V+ ++LTG G + F  
Sbjct: 5   ISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64

Query: 64  GFDI------NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
           G D+      N  Q  H    VSL     +   + ++E   +P++AA+ G+ALGGGLELA
Sbjct: 65  GADLKERAGMNEEQVRHA---VSL-----IRTTMEMVEQLPQPVIAAINGIALGGGLELA 116

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +A E++   + I+++E  ++
Sbjct: 117 LACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           GL++ VV +  L +     A++IA +
Sbjct: 177 GLVEFVVPAHLLEEK----AIEIAEK 198

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  144 bits (366), Expect = 5e-39
 Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V +E   DGVA++ L  P   NAL + +   L + F E +   D++AIVLTG   
Sbjct: 4   TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI  F    GA ++ L      E     I  C KP++AAV G ALGGG ELAM 
Sbjct: 64  VFAAGADIKEFATA-GAIEMYLR---HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMH 119

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +A      G PE+ +G++PG GGTQRL R VG  KA+ M L    + + E   +GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV  E+ L      AL++A  
Sbjct: 180 VSEVVEDEQTLPR----ALELARE 199

Length = 261

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  144 bits (365), Expect = 7e-39
 Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 30/214 (14%)

Query: 8   MEVGN------DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           ME+ N        +A++T IN P  +NAL    +  L    ++  + D+V A++LTG G 
Sbjct: 1   MELKNVILEKEGHIAVVT-INRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVE----------LVVNLIEDCKKPIVAAVEGLA 109
           +    F       V GA D+S M D++ E           V   +E+  KP++AA+ G A
Sbjct: 60  K---AF-------VAGA-DISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           LGGG EL+M C  RIA+ K + G PE+ LG+ PGFGGTQRL R+VG  KA E++     I
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168

Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            +EE  ++GL++ VV  E+L++ ++  A  IAA 
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  131 bits (331), Expect = 3e-34
 Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P  +NAL   ++  L        + + + AIV+TG+   F+ G DI    
Sbjct: 12  GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMA 71

Query: 72  KVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
                 D+S M     + + N   +   +KP++AAV G ALGGG ELAM C   IAA   
Sbjct: 72  ------DLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA 125

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G PE+ LGV+PG GG+QRL R VG +KA+++ L  + + + E  + GL+  VV +++L
Sbjct: 126 KFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185

Query: 190 LKVSRLWALDIAARRKP 206
           L  +   A  IA+   P
Sbjct: 186 LDEALAAATTIASFSLP 202

Length = 257

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  130 bits (328), Expect = 7e-34
 Identities = 76/206 (36%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA P  T+E     V I+TL  P V NAL +     L++ F++  +  +    ++TG G 
Sbjct: 1   MALPFSTVE-RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGD 59

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIVAAVEGLALGGGLEL 116
           + FS G D+    K   AG     P+        L    D  KPI+AAV G+A+GGG EL
Sbjct: 60  KAFSAGNDL----KEQAAGGKRGWPESGF---GGLTSRFDLDKPIIAAVNGVAMGGGFEL 112

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           A+ C   +AA      LPE  +G+    GG  RLPR +GL +A+ M+L  + +T+ EG +
Sbjct: 113 ALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLE 172

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
           LG ++ VV + ELL  +  WA DI A
Sbjct: 173 LGFVNEVVPAGELLAAAERWADDILA 198

Length = 259

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  127 bits (322), Expect = 4e-33
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   
Sbjct: 10  QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMA 69

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A     + D   +L    ++   KP++AAV G ALG G ELA+ C   IA    + 
Sbjct: 70  EKDLAA---TLNDPRPQLWQR-LQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPE+TLG++PG GGTQRL R VG S A +M+L  +SIT+++  + GL+  V   E  L 
Sbjct: 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE--LT 183

Query: 192 VSRLWALDIAAR 203
           + R  AL +A++
Sbjct: 184 LER--ALQLASK 193

Length = 255

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  127 bits (322), Expect = 4e-33
 Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A++TL  P  +NAL   ++  L  + +     + V+A++LTG G R FS G DI+ F
Sbjct: 11  DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEF 70

Query: 71  QKVHGAGDVSLMPDVSVELVV-------NLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
                +  V+   DV++   V         +E   KP++AAV GLA GGG E+    H  
Sbjct: 71  -----SASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLA 125

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IA+ +     PE+ LG+ P FGGTQRLPRL G  +A+E++L   + ++E   ++GL++AV
Sbjct: 126 IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185

Query: 184 VTSEELLKVSRLWALDIAA 202
           V  EELL  +R  A  I  
Sbjct: 186 VPHEELLPAARALARRIIR 204

Length = 260

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  124 bits (314), Expect = 1e-31
 Identities = 84/286 (29%), Positives = 130/286 (45%), Gaps = 11/286 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ- 366
           ++ V V G G++GS IA     +   V + +++ E L K  + I       V   + T+ 
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 367 DKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             A  AL  +    D +E  KD D+VIEAV E   +K   + EL K  P   I ATN+ST
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           +  +   E T   ++ +  HF +        EI+    T  +V   ++   K I  VP+V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 486 VGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGV 542
           +     G+ +N    P+  +A  L + GV D   ID     + G P+GPF +LD+ G   
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242

Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLK----SGRNGKANGKGLYTY 584
           A   +  + +A  D + +      LLK     G+ G A G+G Y Y
Sbjct: 243 AYNITSNWAEATDDENAKK--AAALLKEYIDKGKLGVATGEGFYNY 286

Length = 287

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score =  123 bits (311), Expect = 1e-31
 Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D VA++TL NPPVNAL+  +   L   F+E + R DV+ +VLTG G  F  G D+     
Sbjct: 12  DHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71

Query: 73  VH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           V  G GD+      + E   + I +C KP++AAV G ALG GL L   C   +A+     
Sbjct: 72  VIKGPGDLRAHNRRTRE-CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVF 130

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPE+ +G+    GG +   RL G S    MML    + + E ++ G+I+A +  EEL+ 
Sbjct: 131 GLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMP 187

Query: 192 VSRLWALDIAAR 203
            +   A +IA++
Sbjct: 188 EAMEIAREIASK 199

Length = 257

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score =  119 bits (301), Expect = 3e-30
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            G+  IT  NP   NA+++ +   L      A   D ++ +VLTG G + F  G DI+ F
Sbjct: 19  GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQF 78

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++     +     + +VE     + D  KP +A + G  +GGG+ +A+ C  RIAA  ++
Sbjct: 79  EESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSR 138

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G+P   LG+  G+ G + L  LVG S A ++   ++   + E  ++GL+  V  +++L 
Sbjct: 139 FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198

Query: 191 KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLA 230
                +A  IA      +R+  R           E+LK  
Sbjct: 199 TALADYAATIAGNAPLTLRAAKRA--------IAELLKDE 230

Length = 269

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score =  118 bits (297), Expect = 1e-29
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 19/196 (9%)

Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQKV 73
           VAI+TL NPP N      +  LK    E  +  DV A+V+TG+G +F S G D+N+F   
Sbjct: 13  VAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLF--- 69

Query: 74  HGAGDVSLMPDVSVELVVNLIE------DCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
              GD      V+ E+     E        +   +AA+ G A+GGGLE A+ C  RIA  
Sbjct: 70  -ADGD----KAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEE 124

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           + Q+ LPE ++G++P  GGTQ LP LVG   A  M+L  + + +    ++GL++ VV   
Sbjct: 125 QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKG 184

Query: 188 ELLKVSRLWALDIAAR 203
           E    +R  AL +A +
Sbjct: 185 E----AREAALALAQK 196

Length = 258

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  110 bits (276), Expect = 6e-27
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           D V  +TL N P   NAL+  +   L     EA + DDV  +VLTG    F  G D+   
Sbjct: 12  DRVRTLTL-NRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL--- 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G    +     ++          +KP++ A+ G A+ GGLELA+ C   IA+ + +
Sbjct: 68  -KELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                  +G++PG+G + RLP+ VG+ +A  M L    + + +  + GL+  VV  +ELL
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186

Query: 191 KVSRLWALDIAARRKPWIRSL 211
             +R  A  IA      +R+L
Sbjct: 187 PRARRLAASIAGNNPAAVRAL 207

Length = 258

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score =  108 bits (273), Expect = 1e-26
 Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 11/194 (5%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA I L  P   NAL   ++A L+  F      + V+A+VL G G  F  G D++  
Sbjct: 9   DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSEL 66

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++   AG+  +        V + I+  + P++AA+ G  +GGGLELA   H R+A   T 
Sbjct: 67  RE-RDAGEG-MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-TSEEL 189
             LPE   G+  G GG+ R+PRL+G+++  +MML  +   ++EG +LGL   +V   E L
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184

Query: 190 LKVSRLWALDIAAR 203
            K     A+++A R
Sbjct: 185 DK-----AMELARR 193

Length = 255

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 20/202 (9%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA ITL  P   N L     A L+D F E    DDVKA+VLTG GG F  G D     
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD----- 79

Query: 72  KVHGA-GDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
            VH   G ++ M     EL         +V  +  C +PI+AAV+G+  G G  LAM   
Sbjct: 80  -VHEIIGPLTKMD--MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD 136

Query: 122 ARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
            R+  P  +       +G+     G    LPR++G  +A E++   +S+++EEG + G  
Sbjct: 137 LRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + +V  EELL  ++  A  +AA
Sbjct: 197 NRLVEPEELLAEAQALARRLAA 218

Length = 277

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score =  107 bits (270), Expect = 4e-26
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + +EV   G+A IT   P   NA+   +  GL +  E   +   ++A+VL G G 
Sbjct: 5   TSTDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGD 63

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G DI  F+    A D ++  +  ++ V+  +E  + P +AA+ G  +GGG  +A 
Sbjct: 64  KAFVAGTDIAQFRAFSTAED-AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA 122

Query: 119 GCHARIAAPKTQLGLP-ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
            C  RIA P  + G P   TLG         RL  L+G ++  +M+  ++ + +EE    
Sbjct: 123 ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAA 182

Query: 178 GLIDAVVTSEEL 189
           GL++ VV    L
Sbjct: 183 GLVNEVVEDAAL 194

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score =  106 bits (268), Expect = 6e-26
 Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            +  V +E     V IIT+  P   NA+   +  GL    +E  +  D+   +LTG GG 
Sbjct: 1   MSDEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE-DCKKPIVAAVEGLALGGGLELAMG 119
           F  G D+  F      G+    P +       L E   +KP++AAVEG AL GG ELA+ 
Sbjct: 60  FCAGMDLKAF----ARGE---RPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALA 112

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +AA   + GLPE+  G++   GG  RLPR +    A+E+ L    +T+E   +LGL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           ++ +    + L  +   A  IAA
Sbjct: 173 VNRLTEPGQALDAALELAERIAA 195

Length = 254

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score =  106 bits (267), Expect = 1e-25
 Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 13/217 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA   V  EV + GVA+ITL  P  +NA    + A +    + A +   V+ IVLTG G 
Sbjct: 2   MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED----------CKKPIVAAVEGLA 109
            F  G D+   Q +    D     DV    V N   D           +KP++AA+ G  
Sbjct: 62  GFCAGADMGELQTI-DPSDGRRDTDVR-PFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
            G GL  A+ C  R AA   +        G+I   G +  LPRLVG + A++++L +++ 
Sbjct: 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTF 179

Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
            +EE  +LGL++ VV  +EL++ +  +A D+A    P
Sbjct: 180 YAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216

Length = 272

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score =  106 bits (266), Expect = 1e-25
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 14  GVAIITLINPPV-NALAIP-IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            +  +T+  P   NAL+    V  L        +   V+A++LTG G  FS G ++   +
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR 71

Query: 72  KVHGAGDVSLMPDV------SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              GA   S   D+       ++ +   + + + P++AAV G A+G G +LA  C  RIA
Sbjct: 72  ARVGAFGGSPA-DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIA 130

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   +     + LG+IPG GG   LPR++G+++A EM     +I +    + GL+  VV 
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190

Query: 186 SEELLKVSRLWALDIAA 202
           +++LL  +R  A  IAA
Sbjct: 191 ADQLLPAARALAERIAA 207

Length = 266

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score =  106 bits (266), Expect = 1e-25
 Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 8/190 (4%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G+A IT IN P  +NAL  P++  L   F+     D VK I+LTG+G  F  G D+   +
Sbjct: 19  GIATIT-INRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAE 77

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +V   GDV    DV  + V  + E C+KPI+ A+ G A+  G E+A+ C   +A+   + 
Sbjct: 78  EVF-KGDVK---DVETDPVAQM-ERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
                  G+ P +G +Q+L R++G ++A E+ L +  +T+E   + GL++ VV   ELLK
Sbjct: 133 IDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLK 192

Query: 192 VSRLWALDIA 201
            +R  A  I 
Sbjct: 193 KAREVAEAII 202

Length = 265

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score =  104 bits (260), Expect = 6e-25
 Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINV 69
           + G+  + L  P   NA+   ++ GL+  FE+  +    + ++L  +  G F  G D+  
Sbjct: 2   DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKE 61

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            ++     +V    + S+    + +E    P +A VEG ALGGGLELA+ C  RI   + 
Sbjct: 62  -RRKMSPSEVQKFVN-SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
             GLPE  L +IPG GGTQRLPRLVG S+A E++   + I + E   +GL++  V + E 
Sbjct: 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE- 178

Query: 190 LKVSRLWALDIA 201
              +   AL++A
Sbjct: 179 ---AYEKALELA 187

Length = 251

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score =  102 bits (257), Expect = 5e-24
 Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 20/213 (9%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDI--- 67
            DG+A ITL  P  +NA  + +   L + F+ A + D V+A+++TG G  F  G D+   
Sbjct: 11  ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAG 70

Query: 68  -NVF----QKVHGAGDVSLMPDVSVELV------VNL-IEDCKKPIVAAVEGLALGGG-- 113
            N F     +     D     D S + V      V L I D  KP++AAV G A+G G  
Sbjct: 71  GNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
           + LAM    R+A+   + G      G++P    +  LPRLVGL  A+E +   +   ++E
Sbjct: 131 MTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE 188

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
               GL+ +V   +ELL  +R  A +IA    P
Sbjct: 189 ALDGGLVRSVHPPDELLPAARALAREIADNTSP 221

Length = 296

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score =  101 bits (253), Expect = 6e-24
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 12/196 (6%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           N  +  ITL  P  NA+       + + F       +++  ++TG G + FS G+D+   
Sbjct: 10  NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL--- 66

Query: 71  QKVHGAGDVSLMP--DVSVELVVNLIE--DCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
            K    G+    P  D        L E  D  KP++AAV G A GGG ELA+     + A
Sbjct: 67  -KAAAEGE---APDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA 122

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                 LPE  LG++P  GG  RLP+ +  + A EM++  + + +EE  + G+++ VV  
Sbjct: 123 DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182

Query: 187 EELLKVSRLWALDIAA 202
            EL+  +R  A  +  
Sbjct: 183 AELMDRARELAQQLVN 198

Length = 261

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score =  101 bits (253), Expect = 6e-24
 Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +    ++A    D+  ++LTG G + F  
Sbjct: 4   IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63

Query: 64  GFDINVFQKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           G D    QKV G     D S +  ++V  V   I  C KP++A V G A+GGG  L M C
Sbjct: 64  GGD----QKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              IAA   + G     +G   G  G+  + R+VG  KA E+  L +   +++   +GL+
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213
           + VV   +L K +  W  +I  +    IR L  
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKA 212

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 8e-24
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+E+   G VA +TL  P V NA    ++A L   F    + D V+A+VL G G  F  G
Sbjct: 5   TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
            D+N  +K+ G  D     D +  L  ++  I  C KP++A V G A  GG+ L   C  
Sbjct: 65  ADLNWMKKMAGYSDDENRAD-ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI 123

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGL 179
            +AA      L E+ LG+IP        P   R +G   A    L ++   + E  +LGL
Sbjct: 124 AVAADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGL 179

Query: 180 IDAVVTSEEL 189
           +  VV +E L
Sbjct: 180 VHEVVPAEAL 189

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 1e-23
 Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
            T+E+  D VA +TL  P   NA+     + L + F    +  +V+A+VL+G+G  FS G
Sbjct: 8   FTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66

Query: 65  FDI----NVFQKVH---GAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLE 115
            D+     VF ++     A   + +    + L   +N + DC+KP++AAV+G  +GGG++
Sbjct: 67  IDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVD 126

Query: 116 LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
           L   C  R A+   +  + E+ LG++   G  QRLPR++G     E+ L  + I + E  
Sbjct: 127 LISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186

Query: 176 KLGLIDAVV-TSEELLKVSRLWALDIAA 202
           K+GL++ V   ++ LL  +   A +IAA
Sbjct: 187 KIGLVNRVYDDADALLAAAHATAREIAA 214

Length = 272

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 11/210 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEE-ATSRDDVKAIVLTGNG 58
           M   +VT++  + GVAI+TL +P V NA++I ++ GL +  +     + +V+ +VLTG G
Sbjct: 1   MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGG 112
             F  G   N+  +  G  +     D    L       +  + +   PIV AV G A G 
Sbjct: 60  RGFCTG--ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGV 117

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G+  A+     + A           +G++P  G T  LPRLVG ++A+E+ LL + + +E
Sbjct: 118 GMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAE 177

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
              + GL++ VV   EL+  +   A ++A 
Sbjct: 178 TALQWGLVNRVVDDAELMAEAMKLAHELAN 207

Length = 266

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            GVA +T+ N   +N L  P++  L        +  DV+ +VL G G + F GG DI   
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 71  QKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
                    +L    +   +  L      +     P++A + G  LGGGLELA  C  RI
Sbjct: 75  --------ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126

Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           AA   Q G+PE+ +G IP       LPRL+G ++   ++L  ++I + +    GL+D VV
Sbjct: 127 AAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185

Query: 185 TSEEL 189
              EL
Sbjct: 186 PLAEL 190

Length = 256

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 96.1 bits (240), Expect = 3e-22
 Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V  + L  P V NA+  P  A L D F    + D     VL G GG F  G D+   
Sbjct: 10  NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAV 69

Query: 71  Q-----KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 ++H +GD  + P     + ++      KP++AAV G A+ GGLELA+ C  R+A
Sbjct: 70  GTGRGNRLHPSGDGPMGPS---RMRLS------KPVIAAVSGYAVAGGLELALWCDLRVA 120

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
                 G+     GV    GGT RLPRL+G S+A++++L  + + ++E   +GL + VV 
Sbjct: 121 EEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180

Query: 186 SEELLKVSRLWALDIAA 202
             +    +   A ++AA
Sbjct: 181 KGQARAAAEELAAELAA 197

Length = 254

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 96.1 bits (239), Expect = 6e-22
 Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 37/223 (16%)

Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            +A+ITL  P  +N++A  ++  LK+   E +  + V+ +VLTG G  FS G D     K
Sbjct: 19  EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD----HK 74

Query: 73  VHGAGDVSLMPDV-----------SVELVVNLIEDCKK---PIVAAVEGLALGGGLELAM 118
             G      +P V           S+EL+ ++I   ++   P++AAV G A+GGGL LA+
Sbjct: 75  SAGV-----VPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL 129

Query: 119 GCHARIAAPKTQL-------GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171
               R+A+            GL    LG+      +  LPR +G S+A E+ML  + + +
Sbjct: 130 AADIRVASSSAYFRAAGINNGLTASELGL------SYLLPRAIGSSRAFEIMLTGRDVDA 183

Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
           EE  ++GL+   V  E+LL      A  +A   +P I    RT
Sbjct: 184 EEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRT 226

Length = 276

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 94.5 bits (235), Expect = 7e-22
 Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            + G+A + L  PP NAL   +   +     E   RDDV A++L G    FS G D+   
Sbjct: 14  QDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPEL 73

Query: 71  QKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           + +    A   + +   +V+ V  +     KP VAA+ G ALG GL LA+    R++   
Sbjct: 74  RTLSAQEADTAARVRQQAVDAVAAI----PKPTVAAITGYALGAGLTLALAADWRVSGDN 129

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            + G  E+  G+ P   G  RL R  G S+A E++   +   +EE   LGLID +V  ++
Sbjct: 130 VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDD 189

Query: 189 LLKVSRLWA 197
           +   +  WA
Sbjct: 190 VYDAAAAWA 198

Length = 222

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSK 548
           GF VNR   P    A  LV  GV     ID+A+R   GLP+GPF+L DL G  V     +
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 549 EFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 584
              + F DR+++ SPL++ L+++GR G+  GKG Y Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 93.6 bits (233), Expect = 4e-21
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P   +E       I+T+  P   NAL+  ++  + D ++   +  D+++ +LTG GG F
Sbjct: 4   GPHALVE-QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAF 62

Query: 62  SGGFDINVFQKVH-------GAGDVSLMPDVSVELVVNLIED--CKKPIVAAVEGLALGG 112
             G D+    K         G+ D S +          L++     KP++AAVEG A+ G
Sbjct: 63  CAGMDLKAATKKPPGDSFKDGSYDPSRID--------ALLKGRRLTKPLIAAVEGPAIAG 114

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G E+  G   R+A    + G+ E    + P  G   RL R +  + A +++L  + IT+ 
Sbjct: 115 GTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAA 174

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
           E  ++GLI  VV   + L      AL++A  
Sbjct: 175 EAKEIGLIGHVVPDGQALDK----ALELAEL 201

Length = 263

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 93.0 bits (232), Expect = 4e-21
 Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 25/196 (12%)

Query: 4   PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
            RV++ +  DG+A + L  P  +NAL   +   L    +       ++A++L+G GG F 
Sbjct: 3   DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFC 61

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--------------DCKKPIVAAVEGL 108
            G D+           V+  P  +V+L+   +                   P++AA+EG+
Sbjct: 62  AGLDV---------KSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112

Query: 109 ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168
             GGGL++A+G   RIAAP T+L + E   G++P   GT  L  LV    A E+   ++ 
Sbjct: 113 CFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172

Query: 169 ITSEEGWKLGLIDAVV 184
            ++EE  +LGL+  V 
Sbjct: 173 FSAEEALELGLVTHVS 188

Length = 262

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 93.3 bits (232), Expect = 6e-21
 Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG---RF 61
           +T E   DG+A IT+  P V NA     V  + D F +A    +V  I+LTGNG     F
Sbjct: 20  ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79

Query: 62  SGGFDINVFQKVHGAG----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             G D    QKV G      D   +P ++V  +  LI    KP++A V G A+GGG  L 
Sbjct: 80  CSGGD----QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLH 135

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C   IAA     G     +G   G  G+  L R+VG  KA E+  L +   +EE   +
Sbjct: 136 VVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDM 195

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
           GL++ VV   +L K +  WA ++ A+    +R L
Sbjct: 196 GLVNTVVPHADLEKETVQWAREMLAKSPTALRML 229

Length = 282

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 20/284 (7%)

Query: 319 MGSGIATAHILNNIYVVLKEVN-------SEYLLKGIKTIEANVRGLVTRGKLTQDKANN 371
           MG GIA A       V L +              +    IE  +  LV  G++   +A+ 
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 372 ALKMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
            L  +  V+      D     D+V EAV E +  K++    L +      I+A+ TST  
Sbjct: 61  VLARIA-VVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFL 119

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +    +  +R + AH+ +PA++MPL+E+  ++ T   V+  L  + + I KVPVV G
Sbjct: 120 VTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCG 179

Query: 488 NCTGFAVNR-AFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLP---IGPFQLLDLAGYG 541
              G+ V R      +++AR +V  GV     ID AIR  FGL    +G  + +D  G  
Sbjct: 180 PSPGYIVPRIQALAMNEAAR-MVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCD 238

Query: 542 VAAATSKEFDKAF-PDRSFQSPLVDLLLKSGRNGKANGKGLYTY 584
           +    S+       PDR     +V   ++ GR+G   G G Y Y
Sbjct: 239 ILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDY 282

Length = 314

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 20/212 (9%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +T      G+A +T+  PPVNAL       L D    A +  D + +VL   G  F+ G 
Sbjct: 3   ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGV 62

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVN--------LIEDCKKPIVAAVEGLALGGGLELA 117
           DI   Q           P  +  +  N         + +C  P++AAV G  LGGG+ L 
Sbjct: 63  DIKELQAT---------PGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLV 113

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
                 +A+     GLPE+  G +   G    L RLV       +   + +IT+ E    
Sbjct: 114 GNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHF 170

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
           G ++ VV  ++L + +   A  IAA+    IR
Sbjct: 171 GSVEEVVPRDQLDEAALEVARKIAAKDTRVIR 202

Length = 249

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 89.5 bits (222), Expect = 7e-20
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            GVA +TL  P  +N+    +   L++  E    RDD +A++LTG G  F  G D++   
Sbjct: 7   AGVARLTLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLSERN 65

Query: 72  KVHGAGDVSLMPDV--SVEL----VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              G       PD+  ++E     +V  +     P+V AV G+A G G  LA+ C   +A
Sbjct: 66  PTPGG-----APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLA 120

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A   +       +G+IP  GGT  LPRLVG ++A+ + +L + + +      GLI  VV 
Sbjct: 121 AESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180

Query: 186 SEELL 190
              L+
Sbjct: 181 DAALM 185

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+A  ++   G     ++TL NP   NAL   + A   +    A     ++A+VLTG GG
Sbjct: 1   MSAELLSRREG--STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGG 113
            F  G ++N         + +  P V   S++ + + I       KP++AAVEG A G G
Sbjct: 59  FFCAGGNLNRL-----LENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAG 113

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
             LA+ C   +AA   +  +  + +G+ P  GG+  L R +    A E++L  K I++E 
Sbjct: 114 FSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER 173

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
              LG+++ +    + L  +   A  +AA 
Sbjct: 174 LHALGVVNRLAEPGQALAEALALADQLAAG 203

Length = 260

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 89.0 bits (221), Expect = 9e-20
 Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 10/229 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              V ++V +DGVA+IT+ +P   NA+   + A L+     A +  DV A+V+TG G  F
Sbjct: 2   MDPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAF 60

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G      +  +    +   +  C  P +AAV G A+G GL LA+   
Sbjct: 61  CAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAAVNGAAVGAGLNLALAAD 118

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
            RIA PK         LG+ PG G T  L R VG   A   +L      +E   + GL  
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIR----SLHRTDKLGSLSEAREV 226
            V   ++ +  +   A   AA  +  +     S+  T  L   + A E 
Sbjct: 179 MVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEF 225

Length = 249

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)

Query: 21  INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV----- 73
           +N P   NAL++                 +V  I+L+G G  F  G D+     +     
Sbjct: 23  LNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82

Query: 74  ---HGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               G     L   +  ++  +  IE C+KP++AA+ G  +GGG+++   C  R  +   
Sbjct: 83  SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA 142

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EE 188
              + E+ L +    G  QRLP +VG   A+E+ L  +  +  E  +LGL+  V  S E+
Sbjct: 143 FFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202

Query: 189 LLKVSRLWALDIAAR 203
           L +  RL A  IAA+
Sbjct: 203 LDEGVRLIAEGIAAK 217

Length = 275

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    V +    +G+A +T+    V  NA +  +   L + F+        K ++LTG  
Sbjct: 1   MMMKVVELREVEEGIAQVTM-QDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
             F+ G        +   G  +     +   + +L  +C  P++AA++G A+GGGL L +
Sbjct: 60  NYFATGGTQEGLLSLQ-TGKGT----FTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGL 114

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
                + + ++      +  G  PG G T  LP  +GL+   EM+L ++     E  K G
Sbjct: 115 YADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR--RKP 206
           +   V+   E+L+     AL++A     KP
Sbjct: 175 VPFPVLPRAEVLEK----ALELARSLAEKP 200

Length = 249

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 9/193 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A IT+  P V NA     V  + D F +A   D++  I+LTG G + F  G D    
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD---- 76

Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           QKV G G   D   +P ++V  +  LI  C KP++A V G A+GGG  L + C   IAA 
Sbjct: 77  QKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G   L R+VG  KA E+  L +   ++E   +GL++ VV   
Sbjct: 137 NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196

Query: 188 ELLKVSRLWALDI 200
           +L K +  W  ++
Sbjct: 197 DLEKETVRWCREM 209

Length = 273

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 66/200 (33%), Positives = 97/200 (48%), Gaps = 19/200 (9%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           +G+A I  IN P  +NA        L    ++A     +  IVL G G + F  G D   
Sbjct: 10  NGIAWIM-INRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD--- 65

Query: 70  FQKVH-----GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            Q  H     G G + L     +E + + I D  KP++A V+G A+GGG  L   C   I
Sbjct: 66  -QSTHDGGYDGRGTIGL----PMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTI 120

Query: 125 AAPKTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           A+ K Q G     +G V PG+ GT  L R+VG  KA E+  L +  T++E   +GL++AV
Sbjct: 121 ASEKAQFGQVGPKVGSVDPGY-GTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAV 179

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V  ++L    + W  +I  +
Sbjct: 180 VPHDQLDAEVQKWCDEIVEK 199

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P   NA     V  L+  F +A     V  I+LTG G + F  G D  V 
Sbjct: 75  EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVR 134

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G         ++V  +   I    KP++A V G A+GGG  L M C   IAA    
Sbjct: 135 GK-DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G     +G      G+  + RLVG  KA EM  L++  T+ E  K+GL++ VV  +EL 
Sbjct: 194 FGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELE 253

Query: 191 KVSRLW 196
             +  W
Sbjct: 254 GETVKW 259

Length = 327

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    + + +   GVA +TL N P  +N+    +   L++  ++    D  +A++LTG G
Sbjct: 1   MMYETILLAI-EAGVATLTL-NRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAG 57

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPD--VSVEL----VVNLIEDCKKPIVAAVEGLALGG 112
             F  G D+       G      MPD   S+E     +V  +     P++AAV G+A G 
Sbjct: 58  RGFCAGQDLADRDVTPGGA----MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGA 113

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G  LA+ C   +AA         + +G++P  GGT  LPRLVG+++A+ + LL + +++E
Sbjct: 114 GANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAE 173

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
           +  + GLI  VV    L   ++  A  +A 
Sbjct: 174 QAEQWGLIWRVVDDAALADEAQQLAAHLAT 203

Length = 262

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 65/230 (28%), Positives = 90/230 (39%), Gaps = 36/230 (15%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    V  EV    +A ITL  P   NA    ++  L   F  A + D V+ IVL G G 
Sbjct: 1   MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----------------------IED 96
            FS G D+          D    PD    L  +                          D
Sbjct: 60  HFSAGHDLGSGTPGR---DRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---FGGTQRLPRL 153
             KP +A V+G  + GGL LA  C   +A+       P + +G IPG   F     L   
Sbjct: 117 LPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWEL--- 172

Query: 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            G  KA E++     +T++E  +LG+++ VV  +EL   +   A  IAA 
Sbjct: 173 -GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAM 221

Length = 288

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I    P   NA+   + A +    + A + D ++A V  G  G FS G D+  F  
Sbjct: 15  GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLA 74

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
               G  S   ++ ++ ++ L E  +KPIV+ V+GLA+G G  + + C    A+P++   
Sbjct: 75  A-AMGGTSFGSEI-LDFLIALAE-AEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFR 131

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
            P + L ++P  G +   PRL+G  +A  ++ L +  ++E   + GLI  +V  E +   
Sbjct: 132 TPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191

Query: 193 SRLWALDIAAR 203
           +   A ++AA+
Sbjct: 192 TLKAAEELAAK 202

Length = 251

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           P +  +    GV  I L  P   NA    +   L D + +     DV+ +++ G G  FS
Sbjct: 11  PALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFS 70

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            G D+ + +++  A D  +   V  E   LV N+I +C KPIV+A+ G A+G GL  A+ 
Sbjct: 71  AGGDLALVEEM--ADDFEVRARVWREARDLVYNVI-NCDKPIVSAIHGPAVGAGLVAALL 127

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IAA   ++      LGV  G       P L G++KA   +LL + ++ EE  ++GL
Sbjct: 128 ADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGL 187

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +   V  +ELL      AL++A R
Sbjct: 188 VSLAVDDDELLPK----ALEVAER 207

Length = 268

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
            + K A IGGG++G G A   +L  I V + + + E     I  + AN            
Sbjct: 3   MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERI-IGEVLAN------------ 49

Query: 367 DKANNALKMLKGV-------LDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACP 414
             A  A  ML          L +           D + E+V E + LK+++ +E++ A  
Sbjct: 50  --AERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAAR 107

Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
           P  ++ ++TS    + + E  +  +R+  AH ++P +++PL+E+V   +TS + I     
Sbjct: 108 PDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKE 167

Query: 475 VGKIIKKVPVVVGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGL---P 528
           + + I   PV +      F  +R      + A  LV  G+     ID  IR SFGL    
Sbjct: 168 ILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227

Query: 529 IGPFQLLDLAG 539
           +G F+   +AG
Sbjct: 228 MGLFETYRIAG 238

Length = 495

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            DGVA ITL +  VNAL+  ++  L    ++A   DD   +V+TG  G FSGGFD+ V  
Sbjct: 10  EDGVATITLDDGKVNALSPAMIDALNAALDQA--EDDRAVVVITGQPGIFSGGFDLKVMT 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
              GA     +      L   L+    KP++ A  G A+  G  L +    RI      +
Sbjct: 68  S--GAQAAIALLTAGSTLARRLLSH-PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFK 124

Query: 131 LGLPELTLG-VIPGFG---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           +GL E+ +G  +P         RL       +A+   + ++    EE    G +D VV  
Sbjct: 125 IGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAV---INAEMFDPEEAVAAGFLDEVVPP 180

Query: 187 EELL 190
           E+LL
Sbjct: 181 EQLL 184

Length = 229

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA I L  P   NAL  P++  L    +E  +      +VL GNG  FS G DI + 
Sbjct: 13  EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
              +       + +   E+VV L     K  ++A+ G A G GL +A+     IA    +
Sbjct: 72  LSSNDESKFDGVMNTISEIVVTLY-TMPKLTISAIHGPAAGLGLSIALTADYVIADISAK 130

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           L +  + +G+IP  GG   L + VG +KA +++   K +++ E   LGLID V+  +
Sbjct: 131 LAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187

Length = 260

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK 368
             VA+IG GL+G   A         V L + +          I   +  L     L  + 
Sbjct: 3   GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62

Query: 369 ANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
            +  L  ++     ++   D D V E+  E++ LK+ +F+EL+   PPH ILA++TS + 
Sbjct: 63  PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL 122

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
            +   E  + ++R + AH  +P +++P++E+V    T+   +     + +   + PV + 
Sbjct: 123 ASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182

Query: 488 -NCTGFAVNRAFFPYSQSARL-----LVSLGV-DVFRIDSAIRSFGLP-----IGPFQLL 535
               GF +NR      Q A L     LV+ GV  V  ID+ IR  GL      +GPF+ +
Sbjct: 183 REIDGFVLNRL-----QGALLREAFRLVADGVASVDDIDAVIRD-GLGLRWSFMGPFETI 236

Query: 536 DL-AGYGVA 543
           DL A  GVA
Sbjct: 237 DLNAPGGVA 245

Length = 308

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 7   TMEVGND--GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+ +  D  GVA +TL  P   NAL+  ++A L        +   V+ +VLTG G  F  
Sbjct: 5   TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64

Query: 64  GFDINVFQ---------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D+   +         ++  A  +++M        +  + D  KP++  ++G A GGG+
Sbjct: 65  GGDLGWMRAQMTADRATRIEEARRLAMM--------LKALNDLPKPLIGRIQGQAFGGGV 116

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
            L   C   IA    + GL E  LG+IP       + R +G + A  + + ++   +EE 
Sbjct: 117 GLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEA 175

Query: 175 WKLGLIDAVVTSEEL 189
            +LGL+  VV +E L
Sbjct: 176 VRLGLLSRVVPAERL 190

Length = 262

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V+ E    G V +I L  P   NA    ++  L     E  + D+++  VL  +G  F+ 
Sbjct: 1   VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D+        AG     P+  ++    +     KP+V AV+G  L  G+EL +     
Sbjct: 59  GLDLADVAPKLAAG-GFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +AA  T+    E+  G++P  G T R P+  G   A+  +L      ++E  +LGL+  V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V   E L+     A+++A R
Sbjct: 178 VPPGEQLER----AIELAER 193

Length = 255

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 75.0 bits (184), Expect = 6e-15
 Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 21/233 (9%)

Query: 20  LINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79
           L  P  N +   ++A L     E      ++A++L   G  FS            GA   
Sbjct: 16  LARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFS-----------FGASVA 64

Query: 80  SLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133
             MPD    ++ +L      + D   PI+ AV G  LGGGLE+A   +   AAP  +LG 
Sbjct: 65  EHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQ 124

Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
           PE+ LGV      +  LP  +G   A +++   +SI   EG ++GL +AV    E   + 
Sbjct: 125 PEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAAL- 182

Query: 194 RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246
             +    A      +R   R  +LG     +   K+A ++A      M  H A
Sbjct: 183 AWFDEHPAKLSASSLRFAVRAARLGMNERVKA--KIAEVEALYLEELMATHDA 233

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 9   EVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
            V  DG V  I L  P   NAL   +   L++   +A   +  +AIVLTG G  F  G D
Sbjct: 3   GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGAD 61

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           ++      G       PD  +E++   I+    P++AA+ G A+G GL+LAM C  R+ A
Sbjct: 62  LS------GDVYADDFPDALIEMLHA-IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           P+     P    G+       +RL  LVG  +A  M+L ++ +T+E+    G+ + + T 
Sbjct: 115 PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT- 173

Query: 187 EELLKVSRLWALDIAA 202
              L  ++ WA +IA 
Sbjct: 174 ---LADAQAWAAEIAG 186

Length = 243

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 74.4 bits (183), Expect = 8e-15
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A +TL  P V N   IP+   + +    A     V+ +++  NG  FS G D+   +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMK 69

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +     DV  +  +  ELV  +   I+   KP++  V+G   G    +A+     IA+ K
Sbjct: 70  RAVDEDDVQSLVKI-AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
           T+     + +G+ P  GG   L R +GL++A  + +  +++T+E+  + G +  V  SE+
Sbjct: 129 TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188

Query: 189 LLKVSR 194
           L K   
Sbjct: 189 LEKTCE 194

Length = 255

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 73.4 bits (181), Expect = 3e-14
 Identities = 34/83 (40%), Positives = 47/83 (56%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161
           +A V+G ALGGG E A+  H  IA    ++G PE+   + PG G    L R VG   A E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184

Query: 162 MMLLSKSITSEEGWKLGLIDAVV 184
           ++L  K  T+EE   +GL+D +V
Sbjct: 185 LILSGKLYTAEELHDMGLVDVLV 207

Length = 287

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             AP +  E   DGVA +TL  P   NAL+  ++A L+   +   +   V+ +VL   G 
Sbjct: 8   TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK 66

Query: 60  RFSGGFDINVFQKVHGAGDVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G D+   +   G      L    S   V+  I    +P++A V G+A   G +L  
Sbjct: 67  AFCAGHDLKEMRAARGLAYFRALFARCSR--VMQAIVALPQPVIARVHGIATAAGCQLVA 124

Query: 119 GCHARIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
            C   +AA   +  +P + +G+    P       L R V   +A+EM+L  + I +    
Sbjct: 125 SCDLAVAADTARFAVPGVNIGLFCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAR 180

Query: 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203
           + GL++ VV ++ L       A  IAA+
Sbjct: 181 EWGLVNRVVPADALDAAVARLAAVIAAK 208

Length = 266

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINV 69
           + +A IT  NP   NAL+  ++  L     +  +R +++ ++L    G   +S G DI+ 
Sbjct: 12  NKIATITFNNPAKRNALSKVLIDDLMQALSDL-NRPEIRVVILRAPSGSKVWSAGHDIH- 69

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             ++   G   L  D  +  ++ +I+   KP++A VEG   GG  EL M C   IAA  +
Sbjct: 70  --ELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS 127

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
              +    LGV     G        G     EM   +  IT++    +G+++ VV  EEL
Sbjct: 128 TFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187

Query: 190 LKVSRLWALDIAA 202
              +   A  I+ 
Sbjct: 188 EDFTLQMAHHISE 200

Length = 261

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                V   V + GVA +TL +P   NAL+  +VA L D    A +   V+A+VLT  GG
Sbjct: 3   PVDTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++  +   G GD           +  L   I +  KP++AA++G    GG  L
Sbjct: 62  TFCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGL 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153
              C   +A P++   L E  +GV P       LPRL
Sbjct: 120 VGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL 156

Length = 260

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 24/197 (12%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V +EV  DG+A +TL N P   NA++  +   + D  +     DD   +VLTG G  +S 
Sbjct: 10  VKVEV-EDGIAWVTL-NRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67

Query: 64  GFDIN-VFQKVHGAGDVSLMPDVSVELVVNLIEDC----------KKPIVAAVEGLALGG 112
           G D+   F++     ++         L   +  +           +KP +A V G   GG
Sbjct: 68  GMDLKEYFRETDAQPEI---------LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
           G    + C   IAA + Q GL E+  G+ PG G ++ +   VG   A+  ++  ++ T  
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178

Query: 173 EGWKLGLIDAVVTSEEL 189
           +  ++GL++  V   +L
Sbjct: 179 KAAEMGLVNESVPLAQL 195

Length = 275

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +T EV    +A ITL  P   NA+       L+   E A     V  I+++G G  F  G
Sbjct: 12  MTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIED-----------------------CKKPI 101
           +D++ + +   +G          + V +L +D                         KP 
Sbjct: 71  YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGFGGTQRLPRLVGLSKAI 160
           VA V G  + GG ++A+ C   IAA   ++G P   + GV        RL    G  +A 
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL----GPQRAK 186

Query: 161 EMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            ++     IT  +  + GL    V  EEL
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVPPEEL 215

Length = 302

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 69.5 bits (171), Expect = 1e-12
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           GV +ITL N P  +NAL++ ++  +    +     D V A+V+ G G R F  G DI   
Sbjct: 12  GVGVITL-NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRAL 70

Query: 71  QKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +   AGD          E  +N LI    KP +A ++G+ +GGG+ ++     RI   +
Sbjct: 71  YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER 130

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVG 155
           T++ +PE  +G  P  GGT  L R  G
Sbjct: 131 TKMAMPETGIGFFPDVGGTYFLSRAPG 157

Length = 342

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +G AI+T+  P  +NAL + +      K ++  +   ++ +++TG G  F  G D++ F 
Sbjct: 8   EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF- 66

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
               A D ++    +   ++  I    K  ++A+ G+  G  + +A+    + A+   + 
Sbjct: 67  ----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
                 LG+    G    L +L G  +  E+++L    T+EE  + GL+
Sbjct: 123 VTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170

Length = 248

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 29/233 (12%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ V   G V  + L  P   N +   ++A   D  +          +VL G    F  G
Sbjct: 5   TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRC--EHAATIVVLEGLPEVFCFG 62

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK---KPIVAAVEGLALGGGLELAMGCH 121
            D   F  +    D      +  E + +L           +A V G    GG+       
Sbjct: 63  AD---FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD 119

Query: 122 ARIAAPKTQLGLPELTLGVIPG----FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
             IA       L EL  G+IP     F     L R +G  KA  M L+++ +T+++ +  
Sbjct: 120 IVIADETAPFSLSELLFGLIPACVLPF-----LIRRIGTQKAHYMTLMTQPVTAQQAFSW 174

Query: 178 GLIDAVVT-SEELLK--VSRLWALDIAA--RRKPWIRSLHRTDKLGSLSEARE 225
           GL+DA    S+ LL+  + RL  L+ AA  R K +  +L       +++ AR 
Sbjct: 175 GLVDAYGANSDTLLRKHLLRLRCLNKAAVARYKSYASTL-----DDTVAAARP 222

Length = 255

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            A P V ++    G+A++ L   PVN++ + +   L D      +   V+ +V      R
Sbjct: 8   GATPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRR 67

Query: 61  --FSGGFDINVFQKVHGAGDVSLMPDVSVE-----------LVVNLIEDCKKPIVAAVEG 107
             F+ G DI    +++        P  S              +V L+   +   V A+ G
Sbjct: 68  DVFTAGNDIA---ELYA-------PKTSAARYAEFWLTQTTFLVRLLRS-RLATVCAIRG 116

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLLS 166
               GG  +++ C  R+   +  +GL E+ LG+ +P F     + R++    A  ++L  
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRG 176

Query: 167 KSITSEEGWKLGLIDAVVTSEELL 190
           + +   E  +LGLID VV +  L+
Sbjct: 177 RLVRPAEAKQLGLIDEVVPAAALM 200

Length = 278

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P   N +++ +V+ L +  E+    D V+ I++ G G  FS G D+ +F 
Sbjct: 19  GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFY 78

Query: 72  KVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 D     D  +E+V  +      I   KK  VA V GL +GGG  L +    R+ 
Sbjct: 79  D-GRESD-----DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVG 155
             KT    PE ++G     G +  L RL G
Sbjct: 133 TEKTVFATPEASVGFHTDCGFSYILSRLPG 162

Length = 379

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 66/229 (28%), Positives = 91/229 (39%), Gaps = 42/229 (18%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG------GR-FSGG 64
            G   I    P V NA     V  L    + A    DV  ++LTGNG      G  F  G
Sbjct: 33  QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSG 92

Query: 65  FDINVFQKVHG-------AGDVSLMPDVS-------VELVVNLIEDCKKPIVAAVEGLAL 110
            D    Q++ G        GD +   D +       +E V  LI    K ++A V G A 
Sbjct: 93  GD----QRIRGRDGYQYAEGDEADTVDPARAGRLHILE-VQRLIRFMPKVVIAVVPGWAA 147

Query: 111 GGG--------LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162
           GGG        L LA   HAR       +G          G+G +  L R VG   A E+
Sbjct: 148 GGGHSLHVVCDLTLASREHARFKQTDADVG------SFDGGYG-SAYLARQVGQKFAREI 200

Query: 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
             L ++ ++EE   +G ++AVV   EL   +  WA +I  +    +R L
Sbjct: 201 FFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249

Length = 302

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%)

Query: 308 VRKVAVIGGGLMGSGI---ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
           ++  A IG G++GSG    A AH L+ +           L   +    AN    + R  L
Sbjct: 7   IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV----ANAWPALERQGL 62

Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
               +   L+ +  +       D D + E+  E   LK ++   + +A  P  I+A++TS
Sbjct: 63  APGASPARLRFVATIEAC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120

Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
            +       + +  +R +  H F+P +++PL+E++  ERT+ + +   M + + +   P+
Sbjct: 121 GLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180

Query: 485 -VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI-----GPFQLLDL 537
            V     GF  +R      + A  LV+ GV     ID AIR FG  I     G F    L
Sbjct: 181 HVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR-FGAGIRWSFMGTFLTYTL 239

Query: 538 AG 539
           AG
Sbjct: 240 AG 241

Length = 321

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 16  AIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKV 73
           A I L NP   N+    +V  +   F  A+S  DV A+V T  G + F  G +   + + 
Sbjct: 39  AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98

Query: 74  HGAGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           + AG+       + L  D+     V+ I  C KP++  V G+ +GGG E+ M     IA 
Sbjct: 99  Y-AGNPQEYRQYMRLFNDM-----VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQ 152

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                G      G  P  G T  LP ++G  +A+    L +  ++ +  +LG+I  VV +
Sbjct: 153 DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212

Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
              LKV   +         P + +    D+ G +
Sbjct: 213 ---LKVDGKFV------ANPLVVTDRYLDEFGRI 237

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA+    +      V I+TL  P  +NAL+  +++ L   F        VK ++L G+G 
Sbjct: 5   MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELA 117
            F  G D+    +    G+  L  +  S E ++N ++    K  V+ + G+ +GGG  ++
Sbjct: 65  AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVS 124

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
           +    RIA   T   +PE  LG+ P  G +  L RL G 
Sbjct: 125 VHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163

Length = 381

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 55.8 bits (134), Expect = 5e-08
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 20  LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77
           ++N P  +NAL IP+VA LK  +E      D+  +++ G+G  F  G D+     +   G
Sbjct: 56  ILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115

Query: 78  DVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135
           +V         L   V L     KP VA ++G+ +G G  +++    R+   KT    PE
Sbjct: 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPE 175

Query: 136 LTLGVIPGFGGTQRLPRLVG 155
           + +G  P  G +  L RL G
Sbjct: 176 VQMGFHPDAGASYYLSRLPG 195

Length = 407

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
            ++ T  G  FS GFD+   Q    A     +    +  +V  +     P +AAV G A 
Sbjct: 47  VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106

Query: 111 GGGLELAMGCHARIAAPKTQ--LGLPELTLG-VIPGFGGTQRLPRLVGLSKAI------- 160
             G  LA+  H  +   K +  L + E+ +G  +P           + L +A        
Sbjct: 107 AAGFILAL-SHDYVLMRKDRGVLYMSEVDIGLPLP--------DYFMALLRAKIGSPAAR 157

Query: 161 -EMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            +++L +  +T+EE  ++G++D+   S E
Sbjct: 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186

Length = 239

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 7   TMEVGND--GVAIITLINPPVN-ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+E+  D  G A + L     N A    ++  L    ++  S   ++ ++L G G  FS 
Sbjct: 6   TIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65

Query: 64  GFDINVFQKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G D+   Q+       + + D     EL+ NL    K P +A V+G A GG L L   C 
Sbjct: 66  GADLAWMQQSADLDYNTNLDDARELAELMYNLYR-LKIPTLAVVQGAAFGGALGLISCCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIP 142
             I A   Q  L E+ +G+ P
Sbjct: 125 MAIGADDAQFCLSEVRIGLAP 145

Length = 265

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 57/204 (27%), Positives = 80/204 (39%), Gaps = 43/204 (21%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEA---TSRD-DVKAIVLTGNGGRFSGGFDI 67
             VA ITL  P  +N     IV  + D+ E A     RD D+K IVL G G  FSGG+D 
Sbjct: 13  GPVATITLNRPEQLNT----IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68

Query: 68  NVFQKVHGAG----DVSLMPD-----------VSVELV-----VNLIEDCKKPIVAAVEG 107
                  G G      ++M D           V+            I    KP++A V G
Sbjct: 69  -------GGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHG 121

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRLVGLSKAIEMMLL 165
             +GG  + A+     IA+    +G P   +    + G      L RL  L+K     L 
Sbjct: 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW----LYRL-SLAKVKWHSLT 176

Query: 166 SKSITSEEGWKLGLIDAVVTSEEL 189
            + +T  +  +  LI+  V  E L
Sbjct: 177 GRPLTGVQAAEAELINEAVPFERL 200

Length = 298

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
           +V  +L P++NE+ R++EEG V    D+D A  LG+  P    G    +D VG +  Y  
Sbjct: 3   VVNRLLAPLLNEAIRLVEEG-VATPEDIDAAMRLGLGLPM---GPFELSDLVGLDVGYHI 58

Query: 683 LKKWSQLYGN-FFKPSRFLEERATKG 707
           L+  ++ +G+  ++PS  LE+    G
Sbjct: 59  LEVLAEEFGDRAYRPSPLLEKLVEAG 84

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 23  PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82
           P +NAL   +   L+  ++      ++  +++ G+G  F  G DI     +   G    +
Sbjct: 56  PALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115

Query: 83  PDV--SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV 140
            +   S+   + L+    KP VA + G+ +GGG  +++    R+A  +T    PE  +G 
Sbjct: 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGF 175

Query: 141 IPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            P  G +  L  L G L + + +  L   ++  E    GL    + SEE+
Sbjct: 176 HPDAGASFNLSHLPGRLGEYLGLTGL--KLSGAEMLACGLATHYIRSEEI 223

Length = 401

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 92  NLIEDCKK----PIVAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGF 144
           N IED  +      +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PG 
Sbjct: 109 NGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGT 168

Query: 145 GGTQRL--PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
           GG  R+   R V    A     + + +  +   +  L+D VV   +        A ++AA
Sbjct: 169 GGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228

Query: 203 R 203
           +
Sbjct: 229 Q 229

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGFGGTQRL 150
           +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PG GG  R+
Sbjct: 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178

Length = 550

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 623 IVEMILFPVVNESCRVLEEGIVVRAS--DLDDASVLGMSFPSYRGGIVFWADAVGANYVY 680
            V MI    VNE+  + ++GI   AS  D+D A  LG+++P    G + W D +GA  + 
Sbjct: 422 TVAMI----VNEAADIAQQGI---ASPADIDLAMRLGLNYPL---GPLAWGDRLGAARIL 471

Query: 681 TSLKKWSQLYGN-FFKPSRFLEERATKGIPLSAP 713
             L+    LYG+  ++PS +L  RA  G+ L + 
Sbjct: 472 RVLENLQALYGDPRYRPSPWLRRRAALGLSLRSE 505

Length = 507

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	724
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.94
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.9
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.86
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.8
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.78
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.75
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.75
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.71
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.7
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.68
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.68
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.68
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.67
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.67
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.65
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.63
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.62
PRK07417	279	arogenate dehydrogenase; Reviewed	99.62
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.61
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.6
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.58
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.57
PLN02688	266	pyrroline-5-carboxylate reductase	99.57
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.55
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.55
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.53
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.53
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.52
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.5
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.5
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.48
PRK06545	359	prephenate dehydrogenase; Validated	99.47
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.47
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.46
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.46
PRK08507	275	prephenate dehydrogenase; Validated	99.45
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.45
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.45
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.44
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.42
PRK08655	437	prephenate dehydrogenase; Provisional	99.42
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.41
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.41
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.41
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.41
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.39
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.39
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.39
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.38
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.38
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.38
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.37
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.36
PLN02256	304	arogenate dehydrogenase	99.35
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.31
PLN02858	1378	fructose-bisphosphate aldolase	99.31
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.31
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.31
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.26
PRK07680	273	late competence protein ComER; Validated	99.25
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.25
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.25
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.25
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.25
PRK08818	370	prephenate dehydrogenase; Provisional	99.24
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.24
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.24
PLN02858	1378	fructose-bisphosphate aldolase	99.24
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.23
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.22
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.21
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.21
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.2
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.19
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.19
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.18
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.16
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.14
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.12
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.1
PLN02712	667	arogenate dehydrogenase	99.09
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.09
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.08
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.06
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.05
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.05
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.04
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.04
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.01
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.01
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.98
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.97
PRK06223	307	malate dehydrogenase; Reviewed	98.97
PTZ00117	319	malate dehydrogenase; Provisional	98.95
PLN02712	667	arogenate dehydrogenase	98.95
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.94
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.91
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.88
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.87
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.82
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.79
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.76
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.7
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.69
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.68
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.67
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.63
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.62
PRK06444	197	prephenate dehydrogenase; Provisional	98.61
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.6
PRK12480	330	D-lactate dehydrogenase; Provisional	98.46
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.44
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.43
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.41
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.41
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.38
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.34
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.33
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.33
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.3
PRK10949	618	protease 4; Provisional	98.29
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.28
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.21
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.2
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.2
PRK13243	333	glyoxylate reductase; Reviewed	98.2
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.17
PRK15076	431	alpha-galactosidase; Provisional	98.16
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.16
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.14
PLN02602	350	lactate dehydrogenase	98.13
PRK07574	385	formate dehydrogenase; Provisional	98.1
PRK06436	303	glycerate dehydrogenase; Provisional	98.1
PLN03139	386	formate dehydrogenase; Provisional	98.08
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.08
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.07
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.05
PRK08605	332	D-lactate dehydrogenase; Validated	98.04
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.03
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.01
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.01
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.01
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.97
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.96
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.95
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.88
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.87
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.86
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.82
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.82
PRK05442	326	malate dehydrogenase; Provisional	97.78
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.78
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.76
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.76
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.75
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.75
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.74
PLN02928	347	oxidoreductase family protein	97.74
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.74
PRK05225	487	ketol-acid reductoisomerase; Validated	97.74
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.73
PRK11778	330	putative inner membrane peptidase; Provisional	97.72
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.72
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.71
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	97.69
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.65
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.64
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.62
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.61
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.59
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.57
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.57
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.53
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.53
PLN00106	323	malate dehydrogenase	97.52
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.52
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.51
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.51
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.49
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.49
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.48
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.45
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.44
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.42
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.4
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.4
PTZ00325	321	malate dehydrogenase; Provisional	97.4
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.38
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.36
PRK06487	317	glycerate dehydrogenase; Provisional	97.36
PRK06141	314	ornithine cyclodeaminase; Validated	97.35
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.35
PRK06932	314	glycerate dehydrogenase; Provisional	97.34
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.32
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.31
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.3
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.3
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.29
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.29
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.28
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.28
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.27
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.24
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.24
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.23
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.16
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.15
PRK04148	134	hypothetical protein; Provisional	97.12
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.12
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.12
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.1
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.08
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.07
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.06
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.04
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.04
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.04
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.04
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.02
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.99
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.99
PLN02306	386	hydroxypyruvate reductase	96.97
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.94
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.93
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.88
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	96.87
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	96.83
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.83
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.82
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.8
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	96.77
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.76
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.76
PRK05086	312	malate dehydrogenase; Provisional	96.75
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.74
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.73
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.71
PRK08618	325	ornithine cyclodeaminase; Validated	96.69
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.69
PRK07340	304	ornithine cyclodeaminase; Validated	96.66
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.65
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.64
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.63
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.61
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.61
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.59
PLN02494	477	adenosylhomocysteinase	96.59
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.58
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.57
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.53
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.53
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.52
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.47
PRK08291	330	ectoine utilization protein EutC; Validated	96.45
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.44
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.35
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.35
COG2910	211	Putative NADH-flavin reductase [General function p	96.33
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.32
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.31
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.3
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.26
PRK06407	301	ornithine cyclodeaminase; Provisional	96.25
PRK10949	618	protease 4; Provisional	96.22
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.19
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.18
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.18
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.17
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.14
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.12
PRK06046	326	alanine dehydrogenase; Validated	96.08
PRK06823	315	ornithine cyclodeaminase; Validated	96.06
PLN00203	519	glutamyl-tRNA reductase	96.05
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.95
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	95.95
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.92
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.89
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.84
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.84
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.8
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.78
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.78
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.78
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.77
PRK07589	346	ornithine cyclodeaminase; Validated	95.7
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.65
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.65
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.53
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.5
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.49
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.44
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.44
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.35
PRK09496	453	trkA potassium transporter peripheral membrane com	95.24
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.22
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.12
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	95.1
PRK06199	379	ornithine cyclodeaminase; Validated	95.09
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.05
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.04
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.04
PRK10669	558	putative cation:proton antiport protein; Provision	94.99
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.98
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.96
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.96
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.95
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	94.95
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.92
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.89
PRK09496	453	trkA potassium transporter peripheral membrane com	94.81
PRK06153	393	hypothetical protein; Provisional	94.79
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	94.78
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.77
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.71
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.67
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	94.6
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.56
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.44
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.38
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.32
PLN03075	296	nicotianamine synthase; Provisional	94.3
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.03
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.98
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.96
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.91
PRK12829	264	short chain dehydrogenase; Provisional	93.88
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.85
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	93.84
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.84
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.83
PRK12828	239	short chain dehydrogenase; Provisional	93.82
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.81
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.8
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	93.77
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	93.73
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	93.71
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.7
PRK07326	237	short chain dehydrogenase; Provisional	93.61
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.48
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.47
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.44
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.39
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.37
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	93.36
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.34
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.32
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.31
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.25
PRK08223	287	hypothetical protein; Validated	93.19
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.17
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.17
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.1
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	93.1
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	93.08
PLN03209	576	translocon at the inner envelope of chloroplast su	93.05
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.01
PLN00016	378	RNA-binding protein; Provisional	93.0
CHL00194	317	ycf39 Ycf39; Provisional	93.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.0
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	92.98
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	92.93
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	92.93
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	92.92
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	92.86
PRK07825	273	short chain dehydrogenase; Provisional	92.83
PRK07454	241	short chain dehydrogenase; Provisional	92.82
PRK05868	372	hypothetical protein; Validated	92.81
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	92.79
PRK07831	262	short chain dehydrogenase; Provisional	92.77
PRK07236	386	hypothetical protein; Provisional	92.72
PRK07774	250	short chain dehydrogenase; Provisional	92.66
PRK08328	231	hypothetical protein; Provisional	92.65
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	92.64
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.59
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	92.58
PRK08267	260	short chain dehydrogenase; Provisional	92.53
PRK06196	315	oxidoreductase; Provisional	92.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.47
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.46
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	92.4
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.34
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.33
PRK05866	293	short chain dehydrogenase; Provisional	92.3
PRK07890	258	short chain dehydrogenase; Provisional	92.3
PRK06057	255	short chain dehydrogenase; Provisional	92.29

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=6.7e-132  Score=1150.19  Aligned_cols=699  Identities=34%  Similarity=0.544  Sum_probs=621.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~v-Vl~g~g~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |+++++.++. +++|++||||||+  .|+||.+|+++|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus        10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~   88 (737)
T TIGR02441        10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ   88 (737)
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence            6778899998 8899999999995  6999999999999999999999999975 5699999999999999986421111


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccccCccCCcchhhhhccccc
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      +...+....++++ .+|.++||||||+|||+|+|||++|+|+||||||+++  ++|++||+++|++|++|++++|||++|
T Consensus        89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence            1222223344566 6799999999999999999999999999999999987  589999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCc-------------chHHHHHHHHHHHHHccCchhhhhhhccCCCCCc--
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL--  220 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~--  220 (724)
                      ..+|++|+++|++++|+||+++||||+|||+             +++.+.+.+++.+++..+....+......+....  
T Consensus       168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  247 (737)
T TIGR02441       168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM  247 (737)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence            9999999999999999999999999999987             5578888888888765432221111000111010  


Q ss_pred             ---HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                         ......+..++.+ .++++++||||.+++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..+|.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~  327 (737)
T TIGR02441       248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK  327 (737)
T ss_pred             ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence               1123344444444 457888899999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004918          297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (724)
Q Consensus       297 ~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  376 (724)
                      .    +..+++++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|
T Consensus       328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i  403 (737)
T TIGR02441       328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL  403 (737)
T ss_pred             C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence            3    223468999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCee
Q 004918          377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL  456 (724)
Q Consensus       377 ~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv  456 (724)
                      +++++++++++||+|||||||+.++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|
T Consensus       404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv  483 (737)
T TIGR02441       404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL  483 (737)
T ss_pred             EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD  536 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D  536 (724)
                      ||++++.|++++++++..|++.+||+||+++|+||||+||++.+|++||++++++|+++++||.++.++|||||||+++|
T Consensus       484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D  563 (737)
T TIGR02441       484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD  563 (737)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceeccCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004918          537 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG  612 (724)
Q Consensus       537 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  612 (724)
                      .+|||+++++.+.+++.+++++.  |++++++|+++|++|+|||+|||+|++++  ++..++++..++.....    .|.
T Consensus       564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~  639 (737)
T TIGR02441       564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK  639 (737)
T ss_pred             HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence            99999999999999999887653  68999999999999999999999998654  35677777666644321    111


Q ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC
Q 004918          613 GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN  692 (724)
Q Consensus       613 ~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~  692 (724)
                        ....++++|+||++++++|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++++++.++.+++.+|+
T Consensus       640 --~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~  717 (737)
T TIGR02441       640 --AEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV  717 (737)
T ss_pred             --cccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence              113578999999999999999999999997799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHc-CCCCC
Q 004918          693 FFKPSRFLEERATK-GIPLS  711 (724)
Q Consensus       693 ~~~p~~~l~~~~k~-g~gfy  711 (724)
                      +|+|+++|++|+++ |++||
T Consensus       718 ~~~p~~lL~~~~~~~g~~f~  737 (737)
T TIGR02441       718 QFTPCQLLLDHAKSPGKKFY  737 (737)
T ss_pred             CcCCCHHHHHHHHhcCCCCC
Confidence            99999999999999 99997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=2.1e-130  Score=1135.90  Aligned_cols=697  Identities=31%  Similarity=0.529  Sum_probs=618.0

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC
Q 004918            1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~--~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |++.  ++.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   80 (714)
T TIGR02437         1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP   80 (714)
T ss_pred             CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence            5554  5777754689999999999 589999999999999999999999999999999999999999999986421111


Q ss_pred             --cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                        ....+....++++ ++|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG  159 (714)
T TIGR02437        81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG  159 (714)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence              1112223344566 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCC----cHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR  231 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  231 (724)
                      ..+|++|+++|++++|+||+++||||+++|++++.+++.+++.++......+.+.  +..+...    .......+...+
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  237 (714)
T TIGR02437       160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSKIEAMMSFTTAK  237 (714)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCccccc--CCCCcccccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998866543221111  1111111    111111233334


Q ss_pred             H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcce
Q 004918          232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  310 (724)
Q Consensus       232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~k  310 (724)
                      . ..++++++||||..++++++++...+++++++.|++.|.+++.|+++++++++|+.+|..++.+.  ..+..+++++|
T Consensus       238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~--~~~~~~~~i~~  315 (714)
T TIGR02437       238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAK--KADKIAKDVKQ  315 (714)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCC--CCCCCccccce
Confidence            4 44578899999999999999999999999999999999999999999999999999999987642  11234578999


Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (724)
                      |+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++++.+..+++|+++++++++++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (714)
T TIGR02437       316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI  395 (714)
T ss_pred             EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004918          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  470 (724)
Q Consensus       391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~  470 (724)
                      |||||||++++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~  475 (714)
T TIGR02437       396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA  475 (714)
T ss_pred             EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004918          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  549 (724)
Q Consensus       471 ~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~  549 (724)
                      .+.++++.+||+||+++|+||||+||++.++++||++|+++|+++++||+++ .++|||||||+++|.+|||+.+++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~  555 (714)
T TIGR02437       476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV  555 (714)
T ss_pred             HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHH
Q 004918          550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI  623 (724)
Q Consensus       550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (724)
                      ++..++++..  +++++++|+++|++|+|||+|||+|+++.    ++.+|+++..++...+.     +   ...+++++|
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i  627 (714)
T TIGR02437       556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----E---QRDFDDEEI  627 (714)
T ss_pred             HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----c---cCCCCHHHH
Confidence            9998887642  46899999999999999999999997431    24456666555543321     1   124678899


Q ss_pred             HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004918          624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER  703 (724)
Q Consensus       624 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~  703 (724)
                      +||++++++||+++|++|||+.+++|||.++++|+|||+|+||||+|+|.+|++++++.++.+. .++++|+|+++|++|
T Consensus       628 ~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~  706 (714)
T TIGR02437       628 IARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREM  706 (714)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHH
Confidence            9999999999999999999777999999999999999999999999999999999999999765 788999999999999


Q ss_pred             HHcCCCCC
Q 004918          704 ATKGIPLS  711 (724)
Q Consensus       704 ~k~g~gfy  711 (724)
                      +++|++||
T Consensus       707 ~~~g~~f~  714 (714)
T TIGR02437       707 AKNGQSFY  714 (714)
T ss_pred             HHcCCCCC
Confidence            99999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2e-128  Score=1122.76  Aligned_cols=697  Identities=33%  Similarity=0.555  Sum_probs=616.9

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC
Q 004918            1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~--~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |++.  ++.++..+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~   80 (715)
T PRK11730          1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP   80 (715)
T ss_pred             CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence            6654  57777436899999999995 79999999999999999999999999999999999999999999876421111


Q ss_pred             --cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                        ....+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG  159 (715)
T PRK11730         81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG  159 (715)
T ss_pred             HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence              1112222334455 6689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCc----HHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR  231 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  231 (724)
                      ..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+...  +....+..    ......+...+
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k  237 (715)
T PRK11730        160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK  237 (715)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999775322211  11111111    11122233333


Q ss_pred             HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcce
Q 004918          232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  310 (724)
Q Consensus       232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~k  310 (724)
                      +. .|+++++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+..  .....+.|+|
T Consensus       238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~  315 (715)
T PRK11730        238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQ  315 (715)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccce
Confidence            32 36788999999999999999999999999999999999999999999999999999999876522  1134467999


Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (724)
                      |+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++++++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (715)
T PRK11730        316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV  395 (715)
T ss_pred             EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHH
Q 004918          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  470 (724)
Q Consensus       391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~  470 (724)
                      |||||||++++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~  475 (715)
T PRK11730        396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA  475 (715)
T ss_pred             EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004918          471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  549 (724)
Q Consensus       471 ~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~  549 (724)
                      .+..|++.+||.||+++|+||||+||++.++++|+++++++|++++|||.++ .++|||+|||+++|.+|||+++++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~  555 (715)
T PRK11730        476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV  555 (715)
T ss_pred             HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceeccCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHH
Q 004918          550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI  623 (724)
Q Consensus       550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  623 (724)
                      ++..++++..  +++++++||++|++|+|||+|||+|+++.    +..+++.+..++.....     +   ...+++++|
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i  627 (715)
T PRK11730        556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ-----P---KREFSDEEI  627 (715)
T ss_pred             HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc-----c---cCCCCHHHH
Confidence            9998887643  56899999999999999999999997532    23345555555443211     0   124678899


Q ss_pred             HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004918          624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER  703 (724)
Q Consensus       624 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~  703 (724)
                      .||++.+++|||++|+++||+.+|+|||.+|++|+|||+|+||||+++|.+|+|+++++++.+. .++++|+|+++|++|
T Consensus       628 ~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~  706 (715)
T PRK11730        628 IARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREM  706 (715)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHH
Confidence            9999999999999999999855999999999999999999999999999999999999999875 588899999999999


Q ss_pred             HHcCCCCC
Q 004918          704 ATKGIPLS  711 (724)
Q Consensus       704 ~k~g~gfy  711 (724)
                      +++|++||
T Consensus       707 v~~~~~f~  714 (715)
T PRK11730        707 AANGESYY  714 (715)
T ss_pred             HHcCCCCC
Confidence            99999997

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=5e-128  Score=1116.91  Aligned_cols=688  Identities=34%  Similarity=0.583  Sum_probs=607.7

Q ss_pred             EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCccCCCCchhhhhccCCCccccc
Q 004918            6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p-~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      ++++..+++|++|||||| + .|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++.......+...+
T Consensus         2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   81 (699)
T TIGR02440         2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL   81 (699)
T ss_pred             eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence            344444789999999999 3 699999999999999999999999999987 6888999999999998542111111122


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      ....+.++ ..|.++||||||+|||+|+|||++|+|+||||||+++  ++|++||+++|++|++|++++|+|++|..+|+
T Consensus        82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~  160 (699)
T TIGR02440        82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL  160 (699)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence            23344556 6799999999999999999999999999999999976  79999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCC--CCcHHHHHHHHHHHH-HHHHh
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARL-QAKKT  237 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  237 (724)
                      +|+++|++++|+||+++||||+|+|++++++++.++|++.  ..+.  +......++  .+.......+....+ ..+++
T Consensus       161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~  236 (699)
T TIGR02440       161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KPIR--KPLSLQERLLEGTPLGRALLFDQAAKKTAKKT  236 (699)
T ss_pred             HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CCCC--CCccchhhhcccCchhHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999741  0000  000000000  000111112222233 34578


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEEEcCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGG  317 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G  317 (724)
                      +++|||+..+|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.+.. .  ...++++||+|||+|
T Consensus       237 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG  313 (699)
T TIGR02440       237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGG  313 (699)
T ss_pred             ccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCc
Confidence            8899999999999999999999999999999999999999999999999999998876542 2  234678999999999


Q ss_pred             CCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEccc
Q 004918          318 LMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI  396 (724)
Q Consensus       318 ~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~  396 (724)
                      .||++||..++ ++|++|+++|++++.++++..++++.+++.++++.+++.+.+..+.+|+++++++++++||+||||||
T Consensus       314 ~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~  393 (699)
T TIGR02440       314 LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVF  393 (699)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEecc
Confidence            99999999998 58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHH
Q 004918          397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG  476 (724)
Q Consensus       397 e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~  476 (724)
                      |++++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++.+..|+
T Consensus       394 E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~  473 (699)
T TIGR02440       394 EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA  473 (699)
T ss_pred             ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC
Q 004918          477 KIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD  556 (724)
Q Consensus       477 ~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~  556 (724)
                      +.+||+||+++|.|||++||++.++++||++++++|++++|||.++.++|||+|||+++|.+|+|+++++++.+++.+++
T Consensus       474 ~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~  553 (699)
T TIGR02440       474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGE  553 (699)
T ss_pred             HHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999998


Q ss_pred             CCCCcHHHHHHHHcCCCCcccCccceeccCCC-CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 004918          557 RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNES  635 (724)
Q Consensus       557 ~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea  635 (724)
                      ++.|++++++||++|++|+|||+|||+|++++ ++.+++.+..++.       ..+   ...+++++++||++.+++|||
T Consensus       554 ~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~v~~Rll~~~~~Ea  623 (699)
T TIGR02440       554 RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP---GVDKEASAVAERCVMLMLNEA  623 (699)
T ss_pred             CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC---CCCCCHHHHHHHHHHHHHHHH
Confidence            77788999999999999999999999998643 3445544443331       111   124679999999999999999


Q ss_pred             HHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCC
Q 004918          636 CRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS  711 (724)
Q Consensus       636 ~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy  711 (724)
                      ++|+++||+.+++|||+++++|+|||+|++|||+++|.+|+|.+++.++.+++.++++|+|+++|++|+++|++||
T Consensus       624 ~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~  699 (699)
T TIGR02440       624 VRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY  699 (699)
T ss_pred             HHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence            9999999966999999999999999999999999999999999999999999999999999999999999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.9e-127  Score=1113.55  Aligned_cols=690  Identities=35%  Similarity=0.576  Sum_probs=610.8

Q ss_pred             cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccc
Q 004918            5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      .+.++..+++|++||||||  +.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++.......+...
T Consensus         6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~   85 (708)
T PRK11154          6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA   85 (708)
T ss_pred             eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence            4667775689999999999  47999999999999999999999999999999864 89999999998854221111112


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      +....++++ ++|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|++++|..+|
T Consensus        86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A  164 (708)
T PRK11154         86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA  164 (708)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence            223334455 6799999999999999999999999999999999986  4899999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC--CcHHHHHHHHHHHHH-HHH
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AKK  236 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~  236 (724)
                      ++|+++|++++|+||+++||||+++|++++.+++.++|+++....+ ...   ...++.  +.......+..++.+ .++
T Consensus       165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~  240 (708)
T PRK11154        165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLP---VRERLLEGNPLGRALLFKQARKKTLAK  240 (708)
T ss_pred             HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCC---chhhhcccCchhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988421110 000   000000  011112233333443 457


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEEEcC
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGG  316 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~  316 (724)
                      ++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.+.. .  ..++.++||+|||+
T Consensus       241 ~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGa  317 (708)
T PRK11154        241 TQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGG  317 (708)
T ss_pred             cccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECC
Confidence            88899999999999999999999999999999999999999999999999999998876542 2  23467999999999


Q ss_pred             CCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcc
Q 004918          317 GLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV  395 (724)
Q Consensus       317 G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav  395 (724)
                      |.||++||..++ .+|++|+++|++++.++++..++++.+++.+++|.+++.+....+++|+++++++++++||+|||||
T Consensus       318 G~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav  397 (708)
T PRK11154        318 GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAV  397 (708)
T ss_pred             chhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecc
Confidence            999999999999 8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHH
Q 004918          396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTV  475 (724)
Q Consensus       396 ~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l  475 (724)
                      ||+.++|+++|+++++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|++++++.+..+
T Consensus       398 ~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~  477 (708)
T PRK11154        398 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVAL  477 (708)
T ss_pred             cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCC
Q 004918          476 GKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP  555 (724)
Q Consensus       476 ~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~  555 (724)
                      ++.+||.||+++|.||||+||++.++++|+++++++|++++|||.++.++|||+|||+++|.+|+|++.++++.+++.++
T Consensus       478 ~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~  557 (708)
T PRK11154        478 AKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALG  557 (708)
T ss_pred             HHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999998


Q ss_pred             CCCCCcHHHHHHHHcCCCCcccCccceeccCCCC---CCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHH
Q 004918          556 DRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVV  632 (724)
Q Consensus       556 ~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  632 (724)
                      +++.+++++++|+++|++|+|||+|||+|++++.   +.+++++...+.       ..+   ...+++++|.||++.+++
T Consensus       558 ~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~i~~Rll~~~~  627 (708)
T PRK11154        558 ERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP---QSRLSANEIAERCVMLML  627 (708)
T ss_pred             CCCCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC---CCCCCHHHHHHHHHHHHH
Confidence            7766889999999999999999999999975322   334444433321       111   124789999999999999


Q ss_pred             HHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCCC
Q 004918          633 NESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  712 (724)
Q Consensus       633 ~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy~  712 (724)
                      |||++|+++||+.+++|||.+|++|+|||+|+||||+++|.+|++++++.++.+++.++++|.|+++|++|+++|++||.
T Consensus       628 nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~~  707 (708)
T PRK11154        628 NEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFYP  707 (708)
T ss_pred             HHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCCC
Confidence            99999999999669999999999999999999999999999999999999999999999999999999999999999973

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=1.6e-74  Score=643.80  Aligned_cols=402  Identities=32%  Similarity=0.513  Sum_probs=359.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.++++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||+|||||||+.++|+.+|++++..+++++||+||||++++++++..+.+|+|++|+|||+|++.++++|+++|+.|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004918          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~  544 (724)
                      ++++++.++++.+||.||++++.|||++||++.++++||+.++++| +++++||+++ .++|||||||+++|++|+|+.+
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999998 5999999999 7899999999999999999999


Q ss_pred             HHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccceeccCCCCCCCC-----------------------------
Q 004918          545 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD-----------------------------  593 (724)
Q Consensus       545 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~-----------------------------  593 (724)
                      ++.+.+++.+ +++.| |++++++|+++|++|+|||+|||+|+++......                             
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE  323 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence            9999988874 56555 7889999999999999999999999864322111                             


Q ss_pred             -----------------------------------------CCchhHHHHHhhhcc--CCCCC-----------------
Q 004918          594 -----------------------------------------PSVLPIIEECRRLSN--IMPGG-----------------  613 (724)
Q Consensus       594 -----------------------------------------~~~~~~~~~~~~~~~--~~~~~-----------------  613 (724)
                                                               +.+..++...+....  +.+..                 
T Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~  403 (503)
T TIGR02279       324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA  403 (503)
T ss_pred             hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence                                                     000000000000000  01110                 


Q ss_pred             -C-Cccc--CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhh
Q 004918          614 -K-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL  689 (724)
Q Consensus       614 -~-~~~~--~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~  689 (724)
                       + +..+  ++++|+||++++++|||++++++||+ +++|||.+|++|+|||+   |||+|+|.+|+|.++++++.+++.
T Consensus       404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~  479 (503)
T TIGR02279       404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH  479 (503)
T ss_pred             CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence             0 0112  35899999999999999999999999 99999999999999999   999999999999999999999999


Q ss_pred             hC-CCCCCCHHHHHHHHcCCCCCC
Q 004918          690 YG-NFFKPSRFLEERATKGIPLSA  712 (724)
Q Consensus       690 ~~-~~~~p~~~l~~~~k~g~gfy~  712 (724)
                      ++ ++|+|+++|++|++.|.+|.+
T Consensus       480 ~~~~~~~p~~~L~~~v~~g~~~~~  503 (503)
T TIGR02279       480 YGEERYRPSSLLRRRALLGSGYED  503 (503)
T ss_pred             cCCCcCCcCHHHHHHHHcCCCcCC
Confidence            98 489999999999999999853

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.9e-73  Score=634.91  Aligned_cols=404  Identities=32%  Similarity=0.549  Sum_probs=362.0

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       305 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      .++++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..+++++.++++++
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (724)
                      +++||+|||||||+.++|+.+|++++..+++++||+||||++++++++..+.+|+||+|+|||+|++.++++|+++|+.|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004918          465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV  542 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~  542 (724)
                      ++++++++.++++.+||.|+++++.|||++||++.++++|++.++++| +++++||+++ .++|||||||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            999999999999999999999999999999999999999999999998 5999999999 78999999999999999999


Q ss_pred             HHHHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccceeccCCCC-CCCCCCch--------------------hH
Q 004918          543 AAATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVL--------------------PI  599 (724)
Q Consensus       543 ~~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~--------------------~~  599 (724)
                      .+++.+.++..+ ++..| +++++++|+++|++|+|+|+|||+|+++++ +.++++..                    .+
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL  323 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence            999999988764 45445 788999999999999999999999975432 22222211                    11


Q ss_pred             HHH----------------------------Hhhhc-----------cCCCC--CCCccc--------------------
Q 004918          600 IEE----------------------------CRRLS-----------NIMPG--GKPISV--------------------  618 (724)
Q Consensus       600 ~~~----------------------------~~~~~-----------~~~~~--~~~~~~--------------------  618 (724)
                      +..                            .....           -+.|.  .+..++                    
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~  403 (507)
T PRK08268        324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ  403 (507)
T ss_pred             HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            100                            00000           00000  011112                    


Q ss_pred             ----------CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHh
Q 004918          619 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ  688 (724)
Q Consensus       619 ----------~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~  688 (724)
                                ++++|+||++.+++|||++|+++||+ |++|||.+|++|+|||+   |||+|+|.+|+|.++++++.+++
T Consensus       404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~  479 (507)
T PRK08268        404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA  479 (507)
T ss_pred             cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence                      68999999999999999999999998 99999999999999999   99999999999999999999999


Q ss_pred             hhCC-CCCCCHHHHHHHHcCCCCCC
Q 004918          689 LYGN-FFKPSRFLEERATKGIPLSA  712 (724)
Q Consensus       689 ~~~~-~~~p~~~l~~~~k~g~gfy~  712 (724)
                      .+|+ +|+|+++|++|+++|+.||.
T Consensus       480 ~~g~~~~~p~~ll~~~v~~G~~~~~  504 (507)
T PRK08268        480 LYGDPRYRPSPWLRRRAALGLSLRS  504 (507)
T ss_pred             HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence            9985 99999999999999999976

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=1.7e-65  Score=526.97  Aligned_cols=280  Identities=40%  Similarity=0.682  Sum_probs=271.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .++||+|||+|.||++||..++..|++|+++|++++.++++...+++.+++++++|++++++.+..+++++.++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            58999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||+|||+|+||.++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.|++||+++|..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004918          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~  544 (724)
                      ++++++.+|++.+||+|++++|.||||+||++.++++||++++++|+ ++++||.++ .++|||||||+++|++|+|+.+
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999995 999999999 7899999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccceeccC
Q 004918          545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK  586 (724)
Q Consensus       545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (724)
                      ++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            9999999888843 44 689999999999999999999999975

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-63  Score=470.35  Aligned_cols=280  Identities=33%  Similarity=0.589  Sum_probs=265.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH-----HHHhhcCccccc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGVL  380 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~  380 (724)
                      ..++.|+|||+|.||++||+..+..|++|+++|++++++.++.+.|.+.+.+..+++..+...     ++..+++|..++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999999999999999999999988888776443     366788999999


Q ss_pred             Cc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe
Q 004918          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  459 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii  459 (724)
                      +. ++++++|+||||+.|+.++|+.+|++++..+++++|++||||++.+++++..+++|.||.|+|||||+..|++||+|
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi  168 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI  168 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence            88 66899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL  537 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~  537 (724)
                      +++.|++++++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +.+|||.+| .|.|+||||||++|.
T Consensus       169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy  248 (298)
T KOG2304|consen  169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY  248 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999996 999999999 899999999999999


Q ss_pred             hchHHHHHHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccceecc
Q 004918          538 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE  585 (724)
Q Consensus       538 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~  585 (724)
                      +|||++..+++.|++.+++. .| |+|++.++|++|++|+|+|+|||+|.
T Consensus       249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            99999999999999998654 44 99999999999999999999999993

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2e-61  Score=491.28  Aligned_cols=378  Identities=38%  Similarity=0.630  Sum_probs=349.2

Q ss_pred             CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcccCC
Q 004918          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES  398 (724)
Q Consensus       319 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~  398 (724)
                      ||++||..+..+|++|++.|.|...++++..++...+...+..+.++..+.......+..+.|++.++++|+|||+|.||
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHH
Q 004918          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI  478 (724)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~  478 (724)
                      +++|++++.+|++++++++|+.||||++++.++++.+..|++++|+|||+|.+.++++||+.+..|+..++..+.+....
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004918          479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR  557 (724)
Q Consensus       479 lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~  557 (724)
                      .||.|++|++++||.+||++.+|.+++.++..+ |++|.++|++...||||+||+++.|..|+|+..++...+...++++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence            999999999999999999999999999999988 9999999999999999999999999999999888777666555443


Q ss_pred             CCCcHHHHHHHHcCCCCcccCccceeccCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHHHHHH
Q 004918          558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC  636 (724)
Q Consensus       558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~  636 (724)
                           +.++|++.|+.|+|||+|||.|+++..+..++ +..+.+....      +...+...+++++++|++++++|||+
T Consensus       241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal  309 (380)
T KOG1683|consen  241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL  309 (380)
T ss_pred             -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence                 78999999999999999999999875544444 2233333222      11223567899999999999999999


Q ss_pred             HHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCCC
Q 004918          637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  712 (724)
Q Consensus       637 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy~  712 (724)
                      +|++|||..+++++|++.++|+|||+++||||.|+|.+|++++++.++.|+.     |+|+++|++++++|+-||+
T Consensus       310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~  380 (380)
T KOG1683|consen  310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN  380 (380)
T ss_pred             HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence            9999999999999999999999999999999999999999999999999986     9999999999999999985

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.3e-59  Score=489.76  Aligned_cols=280  Identities=34%  Similarity=0.558  Sum_probs=271.0

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       305 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      +++++||+|||+|.||.+||.+++.+|++|++||++++.++++.+++++.+++++++|.++..+....+++++.++++++
T Consensus         2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   81 (286)
T PRK07819          2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD   81 (286)
T ss_pred             CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhC-CCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~  463 (724)
                      +++||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++....+|+|++|+|||+|++.++++||+++..
T Consensus        82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~  161 (286)
T PRK07819         82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV  161 (286)
T ss_pred             hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence            99999999999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH-HcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhch
Q 004918          464 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY  540 (724)
Q Consensus       464 t~~e~~~~~~~l~~-~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gl  540 (724)
                      |++++++++.+++. .+||.|++++|.|||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.+|+
T Consensus       162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gl  241 (286)
T PRK07819        162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGL  241 (286)
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhcc
Confidence            99999999999988 599999999999999999999999999999999997 999999999 899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceec
Q 004918          541 GVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  584 (724)
Q Consensus       541 d~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y  584 (724)
                      |++.++++.+++.++++.| |++++++|+++|++|+|+|+|||+|
T Consensus       242 d~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        242 DTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            9999999999999988665 8899999999999999999999998

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5e-55  Score=459.58  Aligned_cols=279  Identities=29%  Similarity=0.444  Sum_probs=264.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHHhhcCcccccCcc-C
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDYS-E  384 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~  384 (724)
                      .++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.+..+.+.+.++.++ ......+++.+++++ +
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46899999999999999999999999999999999999999999888888889988888776 666778999888884 6


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (724)
                      +++||+||+|+||+.++|+++++++.+.+++++||++|+|++++++++..+.+|+||+|+|||+|++.++++|+++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004918          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld  541 (724)
                      ++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999999 699999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccceecc
Q 004918          542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE  585 (724)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~  585 (724)
                      ++.++++.+++.++++++  |++++++||++|++|+|+|+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999988764  78999999999999999999999994

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.6e-54  Score=453.47  Aligned_cols=278  Identities=31%  Similarity=0.549  Sum_probs=263.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      +++||+|||+|.||.+||..++++|++|++||++++.++++.+++++   .+...++.+.++..+.+....++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            47899999999999999999999999999999999999988877765   366677888888888888888998888888


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~  463 (724)
                      ++++||+||+|+||+.++|+++++++.+.+++++||+||||++++++++..+.+++|++|+|||+|++.++++|+++++.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004918          464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (724)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld  541 (724)
                      |++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCccc-----Cccceec
Q 004918          542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY  584 (724)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~-----g~Gfy~y  584 (724)
                      ++.++++.+++.+++++| |++++++|+++|++|+||     |+|||+|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            999999999999988665 889999999999999999     9999998

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=6.6e-54  Score=451.57  Aligned_cols=280  Identities=32%  Similarity=0.514  Sum_probs=267.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++||+|||+|.||.+||..|+++|++|++||++++.++++.+++...+...++.+.++..+.+....+++.++++ ++++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            478999999999999999999999999999999999999988888888888888999988888888899988888 6789


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||+||+|+|++.++|+.+++++.+.++++++|++|+|+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004918          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~  544 (724)
                      +++++++++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 7999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccceeccCC
Q 004918          545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG  587 (724)
Q Consensus       545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~  587 (724)
                      ++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|+++
T Consensus       241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~  283 (288)
T PRK09260        241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR  283 (288)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCC
Confidence            9999999998887668999999999999999999999999764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=8.5e-54  Score=449.61  Aligned_cols=278  Identities=36%  Similarity=0.617  Sum_probs=267.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .|+||+|||+|.||.+||..++++|++|+++|++++.++++.+++++.++...+.|.++..+......+++.++++++++
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            46799999999999999999999999999999999999999999999999999999999888888888999888888899


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||+||+|+||+.++|+++++++.++++++++|+||||++++++++..+.++.|++++||++|++.++++|+++++.|++
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~  161 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD  161 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004918          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~  544 (724)
                      ++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus       162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  241 (282)
T PRK05808        162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL  241 (282)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceec
Q 004918          545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  584 (724)
Q Consensus       545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y  584 (724)
                      ++++.+++.++++.| |++++++|+++|++|+|+|+|||+|
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            999999999987555 8899999999999999999999998

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=2.1e-53  Score=449.64  Aligned_cols=282  Identities=32%  Similarity=0.577  Sum_probs=270.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +++||+|||+|.||.+||..|+++|++|++||++++.++++.+++++.++.+++.|.++.++.+..++++.+++++++++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999988888888888888888899


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||+||+||+|++++|+.+++++.+.+++++||+||||++++++++..+.++.+++++||++||+.++++|+++++.|++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004918          467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  544 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~  544 (724)
                      ++++.+.++++.+|+.++++++.|||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceeccCCC
Q 004918          545 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS  588 (724)
Q Consensus       545 ~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~  588 (724)
                      ++++.+++.++++.| |++++++|+++|++|+|+|+|||+|++++
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  287 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK  287 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence            999999999987655 88999999999999999999999998754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.3e-53  Score=447.37  Aligned_cols=282  Identities=32%  Similarity=0.521  Sum_probs=268.3

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ++++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.+..+++.|.++..+....+.+++.+++++++
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   81 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL   81 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence            35789999999999999999999999999999999999999988898888888889999988888888899988888889


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      ++||+||+||||+.++|+.+++++.+.++++++|+||||++++++++..+.+++|++|+||++|++.++++|++++..|+
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~  161 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD  161 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004918          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~  543 (724)
                      +++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||.++ .++|||+|||+++|.+|+|++
T Consensus       162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~  241 (292)
T PRK07530        162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC  241 (292)
T ss_pred             HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999998 999999999 799999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceeccCC
Q 004918          544 AATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG  587 (724)
Q Consensus       544 ~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~  587 (724)
                      .++++.+++.++++.| |++++.+|++.|++|+|+|+|||+|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999999887555 8899999999999999999999999654

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.4e-51  Score=434.88  Aligned_cols=268  Identities=28%  Similarity=0.408  Sum_probs=254.9

Q ss_pred             CcHHHHHHHHHCCCcEEEEeCCHH-------HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC--c-cCcCCC
Q 004918          319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV  388 (724)
Q Consensus       319 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a  388 (724)
                      ||++||..++.+|++|+++|++++       .++++.+++++.++.++++|.++.++.+..+++++++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       467788999999999999999999999999999998765  3 668999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHH
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV  468 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~  468 (724)
                      |+|||||||+.++|+++|+++++.+++++||+||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004918          469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA  543 (724)
Q Consensus       469 ~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~Gld~~  543 (724)
                      ++++.++++.+||.|+++++.|||++||++.++++|++.++++| +++++||.++ .++|||   +|||+++|.+|+|++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999998 5999999999 799999   699999999999999


Q ss_pred             HHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCccceeccC
Q 004918          544 AATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEK  586 (724)
Q Consensus       544 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (724)
                      .++++.+++.++++. .|++++++|+++|++|+|+|+|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            999999999888844 4889999999999999999999999964

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=6.8e-52  Score=434.89  Aligned_cols=277  Identities=24%  Similarity=0.325  Sum_probs=248.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      +.++||+|||+|.||++||.+++.+|++|++||++++.++++...+++.+..+.+.+ ++..   ...++++.++++ ++
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence            458899999999999999999999999999999999999999888988888888877 3332   334688888888 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (724)
                      +++||+|||||||+.++|+++|+++++.+++++||+||||+++++++++.+.+|+||+++||||||+.+|+|||++++.|
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T  160 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT  160 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004918          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  538 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~---~Gp~~~~D~~  538 (724)
                      ++++++++.+|++.+||+||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+|   +|||+++|++
T Consensus       161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~  240 (321)
T PRK07066        161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA  240 (321)
T ss_pred             CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence            9999999999999999999999 799999999999999999999999996 999999999 799998   8999999999


Q ss_pred             chHH-HHHHHHHHHHhCCCC---CCCcHHHHHHHH------cCCCCcccCccceeccC
Q 004918          539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK  586 (724)
Q Consensus       539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~k~g~Gfy~y~~  586 (724)
                      |+|. +.+.++++.+.+.+.   ..++++..+|++      ++.+|.++..++|.|.+
T Consensus       241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd  298 (321)
T PRK07066        241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD  298 (321)
T ss_pred             ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9997 555666666554321   124456677777      68999999999999965

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=5.2e-50  Score=392.15  Aligned_cols=250  Identities=32%  Similarity=0.516  Sum_probs=223.8

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      +.+...+++|+.||||||+ +|+|+..++.+|.+++..+++|+.+.++||||.|+.||+|+|++++.......-...   
T Consensus        38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~---  114 (290)
T KOG1680|consen   38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDG---  114 (290)
T ss_pred             eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccc---
Confidence            3333337899999999996 799999999999999999999999999999999999999999999976432221111   


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l  164 (724)
                      ...+.+ ..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|+||||+||+|.+|..+|++|++
T Consensus       115 ~~~~~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~l  193 (290)
T KOG1680|consen  115 IFLRVW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMIL  193 (290)
T ss_pred             cccchh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHH
Confidence            112233 4455799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (724)
                      ||++++|+||+++|||++|||.++++.+|.+|+++|++.|+..++                                   
T Consensus       194 tg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~-----------------------------------  238 (290)
T KOG1680|consen  194 TGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR-----------------------------------  238 (290)
T ss_pred             hcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999875543                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                       +.|+.++.+.+.++.+++..|...|...+.++|.+|++.+|.+||++++.
T Consensus       239 -~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~  288 (290)
T KOG1680|consen  239 -ADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS  288 (290)
T ss_pred             -HHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence             45778888999999999999999999999999999999999999998864

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.7e-49  Score=404.77  Aligned_cols=253  Identities=30%  Similarity=0.470  Sum_probs=227.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~   76 (257)
T PRK05862          1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M   76 (257)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence            7888899998 7899999999996 799999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+.......+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  155 (257)
T PRK05862         77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence            11112233445 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+++                              
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  205 (257)
T PRK05862        156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVM------------------------------  205 (257)
T ss_pred             HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999988765433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||+|..
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~  254 (257)
T PRK05862        206 ------MAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF  254 (257)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence                  4577788777788999999999999999999999999999999998764

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.1e-49  Score=405.45  Aligned_cols=254  Identities=41%  Similarity=0.659  Sum_probs=226.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      |+  ++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus         1 ~~--~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   77 (257)
T PRK07658          1 MK--FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT   77 (257)
T ss_pred             Cc--eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence            55  678888 789999999999889999999999999999999999999999999999999999999885432111111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+......++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus        78 ~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK07658         78 ELAQLGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL  156 (257)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence            1222334555 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                               
T Consensus       157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-------------------------------  205 (257)
T PRK07658        157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR-------------------------------  205 (257)
T ss_pred             HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998864332                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                           .+|++++.....+++++++.|.+.+..++.|+++++++++|++||+|++
T Consensus       206 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  254 (257)
T PRK07658        206 -----AVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF  254 (257)
T ss_pred             -----HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                 4567777777778999999999999999999999999999999988775

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-48  Score=406.39  Aligned_cols=256  Identities=28%  Similarity=0.423  Sum_probs=225.4

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC--
Q 004918            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--   76 (724)
Q Consensus         1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--   76 (724)
                      |+ ++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......  
T Consensus         2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06142          2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG   80 (272)
T ss_pred             CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence            55 57899998 8899999999995 7999999999999999999999999999999999999999999987542110  


Q ss_pred             -----Cc---ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh
Q 004918           77 -----GD---VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (724)
Q Consensus        77 -----~~---~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~  148 (724)
                           ..   .........+++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~  159 (272)
T PRK06142         81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ  159 (272)
T ss_pred             ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence                 00   001112233455 668999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHH
Q 004918          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL  227 (724)
Q Consensus       149 ~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (724)
                      +|++++|..+|++|+++|++++|+||+++||||+|||+ +++++++.++++++++.|+.+++                  
T Consensus       160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------  221 (272)
T PRK06142        160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------  221 (272)
T ss_pred             HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence            99999999999999999999999999999999999985 88999999999999998875443                  


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                        .+|+.++.....+++++++.|...+..++.|+|+++++.+|++||+|+.
T Consensus       222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~  270 (272)
T PRK06142        222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF  270 (272)
T ss_pred             ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                              4566777777778999999999999999999999999999999998764

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-48  Score=403.36  Aligned_cols=254  Identities=33%  Similarity=0.548  Sum_probs=224.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCC-
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-   77 (724)
                      |+ +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....... 
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~   78 (260)
T PRK05980          1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA   78 (260)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence            66 3688888 7899999999995 7999999999999999999999999999999998 6999999999875421111 


Q ss_pred             --cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                        ....+.....+++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (260)
T PRK05980         79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG  157 (260)
T ss_pred             hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence              0111222233455 6689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+++                          
T Consensus       158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  211 (260)
T PRK05980        158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA--------------------------  211 (260)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999998875433                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                                .+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+
T Consensus       212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence                      456777777778899999999999999999999999999999999865

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-48  Score=401.52  Aligned_cols=251  Identities=31%  Similarity=0.478  Sum_probs=223.6

Q ss_pred             cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccccc
Q 004918            5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      .+.++. +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... .....+.
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~   81 (258)
T PRK09076          4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA   81 (258)
T ss_pred             EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence            478888 78999999999988999999999999999999999999999999998 68999999998754211 1111122


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~  163 (724)
                      .....++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~  160 (258)
T PRK09076         82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI  160 (258)
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            2234455 668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (724)
                      ++|++++|+||+++||||+|||++++.+++.+++++++..++.+++                                  
T Consensus       161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------------  206 (258)
T PRK09076        161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA----------------------------------  206 (258)
T ss_pred             HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998875443                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                        .+|++++.....++++.++.|.+.+..++.++++++++++|++||+|++
T Consensus       207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  255 (258)
T PRK09076        207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW  255 (258)
T ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence              4566777777778999999999999999999999999999999988775

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=3e-48  Score=402.08  Aligned_cols=255  Identities=33%  Similarity=0.546  Sum_probs=229.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK05809          1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE   78 (260)
T ss_pred             CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence            8899999998 7899999999996 7999999999999999999999999999999999 89999999998854221 11


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+......++ +.|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  157 (260)
T PRK05809         79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            111222233455 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      +++|+++|++++|+||+++||||+|+|++++.+.+.+++++++..++.+++                             
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  208 (260)
T PRK05809        158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK-----------------------------  208 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|+.++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+.
T Consensus       209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  257 (260)
T PRK05809        209 -------LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF  257 (260)
T ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                   4567788777888999999999999999999999999999999998764

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-48  Score=399.42  Aligned_cols=252  Identities=25%  Similarity=0.407  Sum_probs=223.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+..++.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   81 (256)
T PRK06143          3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS   81 (256)
T ss_pred             cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence            677789999757899999999995 7999999999999999999999999999999998 69999999998754221 11


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|++++|..+
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~  159 (256)
T PRK06143         82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR  159 (256)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence            112223334455 6689999999999999999999999999999999999999999999998 88888999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                             
T Consensus       160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  210 (256)
T PRK06143        160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR-----------------------------  210 (256)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                             .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus       211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence                   4566777777788999999999999999999999999999999875

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-48  Score=398.63  Aligned_cols=252  Identities=29%  Similarity=0.442  Sum_probs=223.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++  +++|+|||||.|++||+|+|++++..... ......
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   77 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-GEGMHH   77 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-hhHHHH
Confidence            4678888 7899999999995 79999999999999999997  78999999999999999999999864221 111112


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      .....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l  156 (255)
T PRK08150         78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM  156 (255)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence            22334555 66899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                                 
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  203 (255)
T PRK08150        157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF---------------------------------  203 (255)
T ss_pred             HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                         .+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+.++
T Consensus       204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~  254 (255)
T PRK08150        204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP  254 (255)
T ss_pred             ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence               456677777777899999999999999999999999999999999887643

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-48  Score=400.81  Aligned_cols=255  Identities=25%  Similarity=0.380  Sum_probs=225.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC--
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (724)
                      |+|+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++ |+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK08140          1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP   78 (262)
T ss_pred             CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence            8888899998 7899999999995 79999999999999999999 99999999999999999999999875321111  


Q ss_pred             ccc-ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           78 DVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        78 ~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                      ... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  157 (262)
T PRK08140         79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM  157 (262)
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence            000 1111122344 67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .++++|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                           
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~---------------------------  210 (262)
T PRK08140        158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA---------------------------  210 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999998875433                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                               .+|+.++.....++.++++.|...+..++.|+++++++++|++||+|.+
T Consensus       211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK08140        211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF  259 (262)
T ss_pred             ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                     4567777777778999999999999999999999999999999988764

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.5e-48  Score=398.91  Aligned_cols=254  Identities=23%  Similarity=0.342  Sum_probs=224.1

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      ..+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         9 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   87 (266)
T PRK08139          9 EAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR   87 (266)
T ss_pred             cCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence            456788888 8899999999996 69999999999999999999999999999999999999999999875422111111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+.....+++ .+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus        88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~  165 (266)
T PRK08139         88 ALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM  165 (266)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence            2222233455 668999999999999999999999999999999999999999999999999875 56899999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+++                               
T Consensus       166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  214 (266)
T PRK08139        166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR-------------------------------  214 (266)
T ss_pred             HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875443                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                           .+|+.++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus       215 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK08139        215 -----IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW  263 (266)
T ss_pred             -----HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                 4567788877888999999999999999999999999999999988775

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=398.29  Aligned_cols=255  Identities=25%  Similarity=0.364  Sum_probs=224.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC--
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (724)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence            8899999998 7899999999996 79999999999999999999999999999999999999999999875421111  


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ..........+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|..
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~  157 (262)
T PRK05995         80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER  157 (262)
T ss_pred             hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence            1111112234555 66899999999999999999999999999999999999999999999999988765 589999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                            
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  209 (262)
T PRK05995        158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR----------------------------  209 (262)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                              .+|+.++.....++.+. ++.|...+..++.|+|+++++++|++||+|+.
T Consensus       210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~  259 (262)
T PRK05995        210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW  259 (262)
T ss_pred             --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                    45667777667788888 88999999999999999999999999998764

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=1.1e-47  Score=396.06  Aligned_cols=251  Identities=31%  Similarity=0.461  Sum_probs=224.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      ||  .+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~   74 (255)
T PRK09674          1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A   74 (255)
T ss_pred             Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence            55  477888 7899999999996 699999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+......++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  153 (255)
T PRK09674         75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA  153 (255)
T ss_pred             hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence            11112233455 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                              
T Consensus       154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------  203 (255)
T PRK09674        154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------  203 (255)
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....++.+.++.|.+.+..++.++++++++++|++||+|++
T Consensus       204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~  252 (255)
T PRK09674        204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF  252 (255)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                  4566777777788999999999999999999999999999999988764

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.2e-48  Score=397.01  Aligned_cols=251  Identities=24%  Similarity=0.344  Sum_probs=220.2

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      |.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus         1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~   78 (255)
T PRK06563          1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE   78 (255)
T ss_pred             CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence            35677 7899999999995 79999999999999999999999999999999999999999999885421111 111111


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l  164 (724)
                      ...+.+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  158 (255)
T PRK06563         79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL  158 (255)
T ss_pred             hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence            12233323578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (724)
                      ||++++|+||+++||||+|+|++++.+++.++++++++.++.+++                                   
T Consensus       159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------------  203 (255)
T PRK06563        159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ-----------------------------------  203 (255)
T ss_pred             cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence            999999999999999999999999999999999999988875433                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                       .+|+.++.....++.++++.|...+..++.++|+++++++|++||+|..
T Consensus       204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  252 (255)
T PRK06563        204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF  252 (255)
T ss_pred             -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence             3466777776778999999999999999999999999999999998764

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=399.32  Aligned_cols=256  Identities=24%  Similarity=0.330  Sum_probs=226.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCccCCCCchhhhhccCCC-
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~-~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-   77 (724)
                      |+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence            8999999999 7899999999995 79999999999999999999876 499999999999999999999875422111 


Q ss_pred             ---c-ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccc
Q 004918           78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (724)
Q Consensus        78 ---~-~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~  153 (724)
                         . ...+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence               0 011112233455 67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004918          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (724)
Q Consensus       154 ~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (724)
                      +|+.++++|+++|++++|+||+++||||+|+|++++++++.++++++++.|+.+++                        
T Consensus       159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------  214 (266)
T PRK05981        159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------  214 (266)
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999988764433                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                  .+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus       215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  263 (266)
T PRK05981        215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF  263 (266)
T ss_pred             ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                        3466777777778999999999999999999999999999999998774

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-47  Score=397.17  Aligned_cols=257  Identities=20%  Similarity=0.268  Sum_probs=221.1

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+ |+++.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus         1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   80 (265)
T PRK05674          1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY   80 (265)
T ss_pred             CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            45 8899999844789999999995 799999999999999999999999999999999999999999998754211110


Q ss_pred             ccc--cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        79 ~~~--~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                      ...  ......+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++ ++++++|.
T Consensus        81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~  158 (265)
T PRK05674         81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE  158 (265)
T ss_pred             hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence            011  112233455 66899999999999999999999999999999999999999999999999988765 48899999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .++++|++||++++|+||+++||||+|||++++.+++.+++.++++.++.+++                           
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------  211 (265)
T PRK05674        159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR---------------------------  211 (265)
T ss_pred             HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999998875543                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                               .+|+.++.....++++++.. +.+.+..++.|+++++++++|++||+|++.
T Consensus       212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~  262 (265)
T PRK05674        212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ  262 (265)
T ss_pred             ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence                     44667777777778888765 456788899999999999999999987753

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-47  Score=398.22  Aligned_cols=255  Identities=27%  Similarity=0.357  Sum_probs=224.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-   77 (724)
                      || +.+.++. +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....... 
T Consensus         1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (266)
T PRK09245          1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG   78 (266)
T ss_pred             CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            66 3588888 7899999999996 699995 99999999999999999999999999999999999999885422110 


Q ss_pred             -ccc----ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcc
Q 004918           78 -DVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR  152 (724)
Q Consensus        78 -~~~----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r  152 (724)
                       ...    .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~  157 (266)
T PRK09245         79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR  157 (266)
T ss_pred             ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence             000    1111123445 5689999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004918          153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (724)
Q Consensus       153 ~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (724)
                      ++|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.|+.+++                       
T Consensus       158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------  214 (266)
T PRK09245        158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR-----------------------  214 (266)
T ss_pred             HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence            999999999999999999999999999999999999999999999999999875443                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                   .+|+.++.....++++.++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK09245        215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF  263 (266)
T ss_pred             -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence                         4566777777778999999999999999999999999999999998764

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=395.76  Aligned_cols=253  Identities=32%  Similarity=0.472  Sum_probs=223.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC-Ccc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~   79 (724)
                      |+|+.+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...... ...
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   79 (257)
T PRK06495          1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL   79 (257)
T ss_pred             CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence            8899999998 78999999999988999999999999999999999999999999999999999999987542111 111


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ........+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |+++++++++|..+|
T Consensus        80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            11122233455 66899999999999999999999999999999999999999999999996   456789999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                              
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------  205 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------  205 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999876543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....+++++++.|...+..++.|+|+++++++|++||+|++
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  254 (257)
T PRK06495        206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF  254 (257)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence                  3456677777778999999999999999999999999999999998774

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=395.56  Aligned_cols=251  Identities=32%  Similarity=0.470  Sum_probs=223.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +++.++..+++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++.....   ...+
T Consensus         7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~   83 (261)
T PRK08138          7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY   83 (261)
T ss_pred             CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence            467888756889999999996 699999999999999999999999999999999999999999998764211   1112


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      .....+++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  162 (261)
T PRK08138         84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM  162 (261)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence            22234455 67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.++.++                                  
T Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~----------------------------------  208 (261)
T PRK08138        163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLAL----------------------------------  208 (261)
T ss_pred             HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998776432                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                        ..+|+.++.....+++++++.|.+.+..++.|+++++++++|++||++++
T Consensus       209 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~  258 (261)
T PRK08138        209 --AQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY  258 (261)
T ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence              24567777777788999999999999999999999999999999988764

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-47  Score=396.42  Aligned_cols=255  Identities=30%  Similarity=0.492  Sum_probs=226.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+ ++|.+++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK07657          1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ   78 (260)
T ss_pred             CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence            66 478888646899999999996 7999999999999999999999999999999999 49999999998754211 11


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+......++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~  157 (260)
T PRK07657         79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence            112222334555 6789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      +++|+++|++++|+||+++||||+|||++++++++.+++++++..++.+++                             
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~-----------------------------  208 (260)
T PRK07657        158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR-----------------------------  208 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|+.++.....+++++++.|.+.+..++.|+++++++++|+++|+++.
T Consensus       209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~  257 (260)
T PRK07657        209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY  257 (260)
T ss_pred             -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence                   4567777777788999999999999999999999999999999988764

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-47  Score=395.57  Aligned_cols=256  Identities=23%  Similarity=0.312  Sum_probs=221.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+|+.+.++.++++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (262)
T PRK07468          1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA   80 (262)
T ss_pred             CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence            778888998833689999999995 7999999999999999999999999999999999999999999987532111111


Q ss_pred             --cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        80 --~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                        .........++ +.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus        81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~  158 (262)
T PRK07468         81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA  158 (262)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence              11112233445 67999999999999999999999999999999999999999999999999999998855 559999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      ++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++                            
T Consensus       159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~----------------------------  210 (262)
T PRK07468        159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA----------------------------  210 (262)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                              .+|+.++.......++.++.|...+..++.|+|+++++++|++||++++
T Consensus       211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  259 (262)
T PRK07468        211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW  259 (262)
T ss_pred             --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                    3456666655556788899999999999999999999999999998775

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=395.15  Aligned_cols=252  Identities=31%  Similarity=0.433  Sum_probs=222.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-   78 (259)
T PRK06494          1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-   78 (259)
T ss_pred             CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence            8889999998 7899999999996 6999999999999999999999999999999998 6999999999875421111 


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      .  .......+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        79 ~--~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  154 (259)
T PRK06494         79 W--PESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR  154 (259)
T ss_pred             h--hhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence            0  011122222 3 56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|+++|++++|+||+++||||+|||++++++++.+++++++..|+.+++                             
T Consensus       155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  205 (259)
T PRK06494        155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR-----------------------------  205 (259)
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|+.++.....+++++++.|  ...+..++.|+|+++++.+|++||++++
T Consensus       206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~  256 (259)
T PRK06494        206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW  256 (259)
T ss_pred             -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                   456677777777889999999  5578899999999999999999887764

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=3.8e-47  Score=393.52  Aligned_cols=253  Identities=28%  Similarity=0.467  Sum_probs=223.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      .+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.+.....    
T Consensus         8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----   83 (265)
T PLN02888          8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD----   83 (265)
T ss_pred             CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence            4567777546889999999996 79999999999999999999999999999999999999999999875321111    


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      ......+.+ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (265)
T PLN02888         84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE  162 (265)
T ss_pred             hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence            111123445 5688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                                
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  210 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL--------------------------------  210 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875443                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhcCCC
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~~~af~~~r~~~~~~  296 (724)
                          .+|+.++.....++++++..|.+.+..++  .++++++++++|++||+++|.|
T Consensus       211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~  263 (265)
T PLN02888        211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS  263 (265)
T ss_pred             ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence                45677777777789999999998888885  5999999999999999998865

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-47  Score=398.27  Aligned_cols=256  Identities=27%  Similarity=0.372  Sum_probs=225.8

Q ss_pred             CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |.|+.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus         2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06210          2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG   80 (272)
T ss_pred             CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence            7889999999 67 99999999995 799999999999999999999999999999999999999999998764221110


Q ss_pred             c-----cccch----hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhh
Q 004918           79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR  149 (724)
Q Consensus        79 ~-----~~~~~----~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~  149 (724)
                      .     ..+..    ..++.+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  159 (272)
T PRK06210         81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI  159 (272)
T ss_pred             cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence            0     00100    123344 5688999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHH
Q 004918          150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK  228 (724)
Q Consensus       150 l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~  228 (724)
                      |++++|+.++++|+++|++++|+||+++||||+|+|++++.+++.++++++++. ++.++.                   
T Consensus       160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~-------------------  220 (272)
T PRK06210        160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMA-------------------  220 (272)
T ss_pred             hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHH-------------------
Confidence            999999999999999999999999999999999999999999999999999975 664332                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                       .+|+.++.....+++++++.|...+..++.|+++++++++|++||+|.+
T Consensus       221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  269 (272)
T PRK06210        221 -----------------VIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF  269 (272)
T ss_pred             -----------------HHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                             4567777777778999999999999999999999999999999998765

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-47  Score=395.27  Aligned_cols=253  Identities=25%  Similarity=0.349  Sum_probs=222.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD   82 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence            45788888 7899999999996 699999999999999999999999999999999999999999999864321111110


Q ss_pred             --c-chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        82 --~-~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                        . .... ..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        83 ~~~~~~~~-~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  160 (263)
T PRK07799         83 GSYDPSRI-DAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV  160 (263)
T ss_pred             hhhhhhHH-HHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence              0 0111 223 2378999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|+++|++++|+||+++||||+|||++++++++.++++++++.|+.+++                             
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~-----------------------------  211 (263)
T PRK07799        161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ-----------------------------  211 (263)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|+.++.....++.++++.|.+.+..++.++++++++++|++||+|++
T Consensus       212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  260 (263)
T PRK07799        212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF  260 (263)
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                   4567777777788999999999999999999999999999999988764

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.7e-47  Score=393.48  Aligned_cols=245  Identities=30%  Similarity=0.475  Sum_probs=218.7

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004918           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (724)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (724)
                      +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~   80 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST   80 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence            5789999999995 799999999999999999999999999999998 589999999998754211 1111222233444


Q ss_pred             HHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC
Q 004918           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (724)
Q Consensus        90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i  169 (724)
                      + ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|++||+++
T Consensus        81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  159 (251)
T PLN02600         81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI  159 (251)
T ss_pred             H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence            5 568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004918          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD  249 (724)
Q Consensus       170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  249 (724)
                      +|+||+++||||+|||++++++++.++++++++.|+.+++                                    .+|+
T Consensus       160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~  203 (251)
T PLN02600        160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK  203 (251)
T ss_pred             CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence            9999999999999999999999999999999999875443                                    4567


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       250 ~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                      .++.....+++++++.|...+..++.|+|+++++++|++||+|+.
T Consensus       204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  248 (251)
T PLN02600        204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY  248 (251)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence            777777788999999999999999999999999999999998764

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-47  Score=394.66  Aligned_cols=255  Identities=24%  Similarity=0.313  Sum_probs=225.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC-C-C
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-G   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~-~   77 (724)
                      ||+ .+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... . .
T Consensus         1 ~~~-~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~   78 (260)
T PRK07511          1 MSA-ELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS   78 (260)
T ss_pred             CCC-eeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence            774 477888 7899999999995 799999999999999999999999999999999999999999998854211 1 1


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~  157 (260)
T PRK07511         79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ  157 (260)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence            1112223344555 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      ++++|+++|++++++||+++||||+|||++++.+++.++++++++.++.++.                            
T Consensus       158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~----------------------------  209 (260)
T PRK07511        158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALA----------------------------  209 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999988764332                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                              .+|+.++.....++.++++.|.+.+..++.|+++++++++|+++|++++
T Consensus       210 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~  258 (260)
T PRK07511        210 --------RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY  258 (260)
T ss_pred             --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence                    4567777777788999999999999999999999999999999998764

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=3e-47  Score=394.30  Aligned_cols=253  Identities=24%  Similarity=0.344  Sum_probs=222.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+. .+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......  
T Consensus         1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~--   76 (261)
T PRK03580          1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD--   76 (261)
T ss_pred             CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence            664 588888 78999999999988999999999999999999999999999999998 6999999999875422111  


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+.......+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a  155 (261)
T PRK03580         77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA  155 (261)
T ss_pred             hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11111122344 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++++++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++                              
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (261)
T PRK03580        156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------  205 (261)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....+++++++.|..    .+..++.|+|+++++++|++||++++
T Consensus       206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~  258 (261)
T PRK03580        206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW  258 (261)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                  45667777777788898888874    78889999999999999999988764

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=2.2e-47  Score=394.38  Aligned_cols=250  Identities=26%  Similarity=0.383  Sum_probs=220.2

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC-Ccc-ccc
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM   82 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~   82 (724)
                      |.++. +++|++||||||+ .|++|.+|+.+|.++++.+++|+ +|+|||||.|++||+|+|++++...... .+. ..+
T Consensus         1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI   78 (256)
T ss_pred             CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence            35677 7899999999995 79999999999999999999998 9999999999999999999987542111 110 111


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      ......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|
T Consensus        79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l  157 (256)
T TIGR02280        79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL  157 (256)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence            11122344 66899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      +++|++++|+||+++||||+|+|++++.+++.++++++++.|+..++                                 
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~---------------------------------  204 (256)
T TIGR02280       158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA---------------------------------  204 (256)
T ss_pred             HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|++
T Consensus       205 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  253 (256)
T TIGR02280       205 ---LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF  253 (256)
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence               4567777777778999999999999999999999999999999998775

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=3.3e-47  Score=396.08  Aligned_cols=250  Identities=23%  Similarity=0.326  Sum_probs=218.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-c--c
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--V   79 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~--~   79 (724)
                      +++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... .  .
T Consensus         8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   86 (275)
T PRK09120          8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ   86 (275)
T ss_pred             ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence            4588888 7899999999995 79999999999999999999999999999999999999999999874321111 1  1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  165 (275)
T PRK09120         87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA  165 (275)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence            11111223445 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++++++.+++++|++.|+.+++                              
T Consensus       166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------  215 (275)
T PRK09120        166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------  215 (275)
T ss_pred             HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHHhhh
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA  291 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~~~af~~~r~  291 (724)
                            .+|+.++.....++.+.++.|..  .+..++.++ |+++++++|++||.
T Consensus       216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence                  45677777777788888888764  355678898 89999999999888

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-47  Score=395.33  Aligned_cols=254  Identities=25%  Similarity=0.412  Sum_probs=224.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc-c
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-V   79 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~-~   79 (724)
                      .+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.......+ .
T Consensus        10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127         10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            35788888 7899999999995 7999999999999999999999999999999998 79999999998754211111 1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+......++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  167 (269)
T PRK06127         89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA  167 (269)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            12222233445 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++++++.++|++++..++.+++                              
T Consensus       168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  217 (269)
T PRK06127        168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------  217 (269)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998775433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....++++.++.|...+..++.|+|+++++.+|++||+|++
T Consensus       218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  266 (269)
T PRK06127        218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF  266 (269)
T ss_pred             ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                  3566777777778999999999999999999999999999999998775

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-47  Score=396.81  Aligned_cols=252  Identities=30%  Similarity=0.427  Sum_probs=223.2

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---cc
Q 004918            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VS   80 (724)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~~   80 (724)
                      .+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........   ..
T Consensus        18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~   96 (277)
T PRK08258         18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL   96 (277)
T ss_pred             ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence            678888 7899999999995 799999999999999999999999999999999999999999998743211111   11


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccC-CcchhhhhcccccHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P-~~g~~~~l~r~~G~~~a  159 (724)
                      .+.....+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|
T Consensus        97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a  175 (277)
T PRK08258         97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA  175 (277)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence            1222233455 678999999999999999999999999999999999999999999999995 78899999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++++++.++++++++.|+.+++                              
T Consensus       176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  225 (277)
T PRK08258        176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------  225 (277)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4567777777788999999999999999999999999999999998875

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5e-47  Score=391.01  Aligned_cols=250  Identities=28%  Similarity=0.410  Sum_probs=220.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+ +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   76 (254)
T PRK08252          1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS--   76 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence            55 4688888 7899999999996 69999999999999999999999999999999999999999999886421110  


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                       ........++   ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  152 (254)
T PRK08252         77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA  152 (254)
T ss_pred             -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence             1111111222   247999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++++++.++++++++.|+.+++                              
T Consensus       153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  202 (254)
T PRK08252        153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------  202 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus       203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  251 (254)
T PRK08252        203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW  251 (254)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                  4566777777778899999999999999999999999999999887764

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-47  Score=390.89  Aligned_cols=247  Identities=26%  Similarity=0.351  Sum_probs=215.5

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004918            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (724)
                      +..+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus         3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (249)
T PRK07938          3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG   82 (249)
T ss_pred             eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence            55554478999999999988999999999999999999999999999999999999999999987542111111111122


Q ss_pred             HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHc
Q 004918           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (724)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~lt  165 (724)
                      ..+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|..++++|+++
T Consensus        83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt  158 (249)
T PRK07938         83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT  158 (249)
T ss_pred             HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence            33455 66899999999999999999999999999999999999999999999986   456789999999999999999


Q ss_pred             CCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004918          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (724)
                      |++++|+||+++||||+|||++++++++.+++++++..++..++                                    
T Consensus       159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------  202 (249)
T PRK07938        159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------  202 (249)
T ss_pred             CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence            99999999999999999999999999999999999998875443                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004918          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (724)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~  292 (724)
                      .+|+.++.....+++++++.|...+..++.++|++|++++|++||+|
T Consensus       203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            45667777777788999999999999999999999999999999875

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=4.3e-47  Score=395.87  Aligned_cols=246  Identities=25%  Similarity=0.420  Sum_probs=217.4

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC---Cc-------cc
Q 004918           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---GD-------VS   80 (724)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~~-------~~   80 (724)
                      +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......   .+       ..
T Consensus        15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   94 (275)
T PLN02664         15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR   94 (275)
T ss_pred             CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence            6889999999995 7999999999999999999999999999999999999999999988542110   00       00


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus        95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~  173 (275)
T PLN02664         95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM  173 (275)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence            1111223445 568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      +|++||++++|+||+++||||+|||+ +++.+++.+++++|++.++.+++                              
T Consensus       174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------------------  223 (275)
T PLN02664        174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------------------  223 (275)
T ss_pred             HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999985 88999999999999999875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|++++.....++.++++.|...+..++.|+|++|++++|++||+|.+
T Consensus       224 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  272 (275)
T PLN02664        224 ------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF  272 (275)
T ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                  4466777777778999999999999999999999999999999998775

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.3e-47  Score=391.50  Aligned_cols=251  Identities=31%  Similarity=0.446  Sum_probs=225.0

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +.+.++. +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++.......  ..+
T Consensus         5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~   81 (259)
T PRK06688          5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE   81 (259)
T ss_pred             CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence            4688888 789999999999 589999999999999999999999999999999999999999999886532211  122


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      .....+++ +.+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|..+|++|
T Consensus        82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l  160 (259)
T PRK06688         82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM  160 (259)
T ss_pred             HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence            33344566 67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      +++|++++|+||+++||||+|+|++++.+++.++++++++.++.+++                                 
T Consensus       161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~---------------------------------  207 (259)
T PRK06688        161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR---------------------------------  207 (259)
T ss_pred             HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999988764332                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|+.++.....++++++..|.+.+..++.++++++++++|+++|+|++
T Consensus       208 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~  256 (259)
T PRK06688        208 ---YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF  256 (259)
T ss_pred             ---HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               3466777777788999999999999999999999999999999988764

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=6.9e-47  Score=390.87  Aligned_cols=253  Identities=25%  Similarity=0.357  Sum_probs=214.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      +.+.++..+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            457777635789999999996 6999999999999999999999999999999999 79999999998743211110000


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      .......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus        82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            001122344 6689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                                
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  208 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR--------------------------------  208 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999876543                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                          .+|++++..... ....+..|.+.+..++.|+|+++++++|++||+|++
T Consensus       209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~  256 (259)
T TIGR01929       209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF  256 (259)
T ss_pred             ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                234455443322 345566677889999999999999999999998775

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-46  Score=388.97  Aligned_cols=251  Identities=23%  Similarity=0.327  Sum_probs=223.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......+...
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07260          1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS   79 (255)
T ss_pred             CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence            35688888 7899999999996 799999999999999999999999999999999999999999999864222111111


Q ss_pred             ---cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                         +.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  158 (255)
T PRK07260         80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR  158 (255)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence               122334455 6689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      +++|+++|++++|+||+++||||+++|++++.+.+.++++++++.++.+++                             
T Consensus       159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  209 (255)
T PRK07260        159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA-----------------------------  209 (255)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                             .+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus       210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence                   4567777777788999999999999999999999999999999875

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=8.4e-47  Score=393.01  Aligned_cols=256  Identities=19%  Similarity=0.254  Sum_probs=223.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCccCCCCchhhhhccCCCc-cc
Q 004918            4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS   80 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~   80 (724)
                      +.|.++..+++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|  ++||+|+|++++.......+ ..
T Consensus        11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~   90 (278)
T PLN03214         11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA   90 (278)
T ss_pred             CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence            4688887458899999999988999999999999999999999999999999987  68999999998753211111 11


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCc-cCCcchhhhhcccccHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~-~P~~g~~~~l~r~~G~~~a  159 (724)
                      .+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+++++++|++++|..++
T Consensus        91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a  169 (278)
T PLN03214         91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA  169 (278)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence            1111122344 6689999999999999999999999999999999999999999999999 5999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++++||+++||||+|||.+++.+.+.+++.++++.++.+++                              
T Consensus       170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  219 (278)
T PLN03214        170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------  219 (278)
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                            .+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.+|.+
T Consensus       220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~  270 (278)
T PLN03214        220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK  270 (278)
T ss_pred             ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence                  456677777677789999999999999999999999999999999988765

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-47  Score=391.04  Aligned_cols=251  Identities=23%  Similarity=0.285  Sum_probs=222.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +++.++. +++|++||||||+ .|++|.+|+.+|.++++.+ .|+++|+|||||.|++||+|+|++++...........+
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T PRK07659          6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV   83 (260)
T ss_pred             ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence            3588888 7899999999996 7999999999999999999 58899999999999999999999988642211111222


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      .....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l  162 (260)
T PRK07659         84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI  162 (260)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence            23344555 56899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      +++|++++|+||+++||||+|| ++++.+++.++++++++.|+.+++                                 
T Consensus       163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~---------------------------------  208 (260)
T PRK07659        163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI---------------------------------  208 (260)
T ss_pred             HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            9999999999999999999999 789999999999999998865433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|+.++.....++++.++.|.+.+..++.|+++++++++|++||+|+.
T Consensus       209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  257 (260)
T PRK07659        209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF  257 (260)
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence               4566777777788999999999999999999999999999999998764

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=1.2e-46  Score=389.35  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=220.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~--g~~F~aG~Dl~~~~~~~~~~   77 (724)
                      ||++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+|||||.  |++||+|+|++++...... 
T Consensus         1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-   77 (261)
T PRK11423          1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-   77 (261)
T ss_pred             CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence            8999999999 7899999999995 79999999999999999999887 999999986  3799999999987532111 


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       ...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus        78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~  155 (261)
T PRK11423         78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH  155 (261)
T ss_pred             -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence             111222334455 668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      ++++|+++|++++|+||+++||||+|||++++++.+.++++++++.++.+++                            
T Consensus       156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------  207 (261)
T PRK11423        156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                              .+|+.++.... .+. ...++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus       208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~  258 (261)
T PRK11423        208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF  258 (261)
T ss_pred             --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence                    34556654332 233 57888899999999999999999999999998775

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=1.7e-46  Score=387.30  Aligned_cols=252  Identities=27%  Similarity=0.315  Sum_probs=212.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      |+++.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~   77 (256)
T TIGR03210         1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG   77 (256)
T ss_pred             CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence            46788888 7899999999995 7999999999999999999999999999999998 69999999998743111 1 11


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      ........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            1112233455 678999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++                               
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~-------------------------------  205 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA-------------------------------  205 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999875543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                           .+|++++......... ...|...+..++.|+|+++++.+|++||+|.+.
T Consensus       206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~  254 (256)
T TIGR03210       206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR  254 (256)
T ss_pred             -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence                 2344554433221111 123456788899999999999999999987753

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=3e-46  Score=388.83  Aligned_cols=253  Identities=26%  Similarity=0.364  Sum_probs=216.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      ++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus        12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~   89 (273)
T PRK07396         12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD   89 (273)
T ss_pred             CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence            45788888 7899999999996 7999999999999999999999999999999999 5999999999874321111 00


Q ss_pred             ccch-hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a  168 (273)
T PRK07396         90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA  168 (273)
T ss_pred             hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence            0111 122344 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++++++.++|+++++.++.+++                              
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  218 (273)
T PRK07396        169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------  218 (273)
T ss_pred             HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998876543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                            .+|+.++.... ..+...+.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus       219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~  267 (273)
T PRK07396        219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS  267 (273)
T ss_pred             ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence                  33455554432 34555567888899999999999999999999988754

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-46  Score=383.98  Aligned_cols=247  Identities=24%  Similarity=0.389  Sum_probs=216.3

Q ss_pred             CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC
Q 004918            1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (724)
Q Consensus         1 M~~~~v~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   76 (724)
                      |+ +.|.+++ ++   +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++......
T Consensus         1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~   78 (251)
T PRK06023          1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG   78 (251)
T ss_pred             CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence            66 4688888 44   59999999995 7999999999999999999999999999999999999999999987542111


Q ss_pred             CcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                        ...+.....+++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.
T Consensus        79 --~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  155 (251)
T PRK06023         79 --GTSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH  155 (251)
T ss_pred             --chhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence              111222334555 67999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .++++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                           
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------  208 (251)
T PRK06023        156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ---------------------------  208 (251)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999998875443                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~  289 (724)
                               ..|+.++... .++.+++..|.+.+..++.|+++++++++|++|
T Consensus       209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence                     3455565443 468888999999999999999999999999874

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-46  Score=393.68  Aligned_cols=258  Identities=25%  Similarity=0.346  Sum_probs=219.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC-C--
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A--   76 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~--   76 (724)
                      |+++.|.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .  
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence            7788899998 7899999999995 799999999999999999999999999999999999999999998753100 0  


Q ss_pred             ---------Cccc----ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCC
Q 004918           77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG  143 (724)
Q Consensus        77 ---------~~~~----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~  143 (724)
                               ....    .+......++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~  158 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE  158 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence                     0000    1111122345 6689999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHH
Q 004918          144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE  222 (724)
Q Consensus       144 ~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~  222 (724)
                      +|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.++++++++. ++.+++             
T Consensus       159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~-------------  225 (296)
T PRK08260        159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA-------------  225 (296)
T ss_pred             cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence            999999999999999999999999999999999999999999999999999999999985 654332             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCC
Q 004918          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIV--HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN  297 (724)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~  297 (724)
                                             .+|++++....  .... ....|...+..++.|+++++++.+|++||+|.....
T Consensus       226 -----------------------~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~  278 (296)
T PRK08260        226 -----------------------LTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK  278 (296)
T ss_pred             -----------------------HHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence                                   34556655432  2233 345688889999999999999999999999876543

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-46  Score=387.65  Aligned_cols=250  Identities=26%  Similarity=0.409  Sum_probs=214.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      ++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   85 (262)
T PRK06144          7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV   85 (262)
T ss_pred             CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence            45688888 7899999999996 6999999999999999999999999999999998 6999999999875432111111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc-cCccCCcchhhhhcccccHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~-~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .+......++ ..|.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus        86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a  164 (262)
T PRK06144         86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV  164 (262)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence            1222234455 6689999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++++++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++                              
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------  214 (262)
T PRK06144        165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------  214 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|+.++.....    .++.+.+.+..++.|+++++++.+|++||+|.+
T Consensus       215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK06144        215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW  259 (262)
T ss_pred             ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                  234455544333    334456788899999999999999999988764

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-46  Score=383.65  Aligned_cols=248  Identities=28%  Similarity=0.335  Sum_probs=216.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus         1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~   77 (254)
T PRK08259          1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL   77 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence            55 4588888 7899999999996 699999999999999999999999999999999999999999998754211 111


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ...  .....+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++
T Consensus        78 ~~~--~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  154 (254)
T PRK08259         78 HPS--GDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA  154 (254)
T ss_pred             hhh--hcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            100  011112 22347999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+|||++++++++.++|+++++.|+.+++                              
T Consensus       155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (254)
T PRK08259        155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------  204 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                            ..|++++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus       205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence                  446677777777899999999998888887 999999999998766

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-46  Score=387.31  Aligned_cols=251  Identities=25%  Similarity=0.287  Sum_probs=211.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-cc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (724)
                      |+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   89 (268)
T PRK07327         10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA   89 (268)
T ss_pred             CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence            5678888744789999999996 699999999999999999999999999999999999999999998754221111 11


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      ........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus        90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (268)
T PRK07327         90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK  168 (268)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence            1122233455 668999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|++||++++|+||+++||||+|+|++++++++.++++++++.|+.+++                               
T Consensus       169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  217 (268)
T PRK07327        169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR-------------------------------  217 (268)
T ss_pred             HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875543                               


Q ss_pred             ChhHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          241 MPQHQACLDVIEEG---IVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       241 ~~a~~~~~~~~~~~---~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                           .+|++++..   ...+++..+..|.    .++.|+++++++.+|++||+|.+
T Consensus       218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~  265 (268)
T PRK07327        218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF  265 (268)
T ss_pred             -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence                 223344432   1123445454443    47789999999999999998774

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.2e-46  Score=381.79  Aligned_cols=250  Identities=28%  Similarity=0.406  Sum_probs=223.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus         1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-~   78 (258)
T PRK06190          1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-G   78 (258)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh-h
Confidence            8999999999 8899999999995 79999999999999999999999999999999999999999999886421111 1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                       . .....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        79 -~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  155 (258)
T PRK06190         79 -A-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA  155 (258)
T ss_pred             -H-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence             1 12234555 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+++|++++++++.++++++++.|+.+++                              
T Consensus       156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (258)
T PRK06190        156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------  205 (258)
T ss_pred             HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998876543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhh
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA  291 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~~~af~~~r~  291 (724)
                            .+|+.++.....+++++++.|...+..++.|   +..++...+|..+-+
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~  254 (258)
T PRK06190        206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR  254 (258)
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence                  4567788777888999999999999999999   777777777776544

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-46  Score=383.89  Aligned_cols=247  Identities=27%  Similarity=0.311  Sum_probs=218.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~   77 (249)
T PRK05870          1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A   77 (249)
T ss_pred             CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence            55 3478888 7899999999995 79999999999999999999999999999999999999999999986532211 1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ........+.+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++
T Consensus        78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            11122233445 56889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|+||+++||||+||  +++.+++.++++++++.++.+++                              
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------  204 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            9999999999999999999999999  78999999999999999875443                              


Q ss_pred             CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004918          240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~  289 (724)
                            .+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus       205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence                  45677777766 789999999999999999999999999999874

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-46  Score=387.62  Aligned_cols=254  Identities=25%  Similarity=0.343  Sum_probs=214.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC---cc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV   79 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---~~   79 (724)
                      +.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   ..
T Consensus         9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   88 (276)
T PRK05864          9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP   88 (276)
T ss_pred             CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence            457777546789999999995 79999999999999999999999999999999999999999999874321111   00


Q ss_pred             c---ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccC-Ccchhhhhccccc
Q 004918           80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG  155 (724)
Q Consensus        80 ~---~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P-~~g~~~~l~r~~G  155 (724)
                      .   .......+++ ..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|
T Consensus        89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG  167 (276)
T PRK05864         89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG  167 (276)
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence            0   1112233445 568899999999999999999999999999999999999999999999997 7899999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+..|+.+++                          
T Consensus       168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  221 (276)
T PRK05864        168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE--------------------------  221 (276)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999998875433                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhhhcC
Q 004918          236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                .+|++++..... ++++++..|..... ..+.|+|+++++.+|++||+|..
T Consensus       222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~  272 (276)
T PRK05864        222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF  272 (276)
T ss_pred             ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                      345666665554 67888887765322 35789999999999999998764

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=1.3e-45  Score=379.08  Aligned_cols=244  Identities=26%  Similarity=0.366  Sum_probs=209.4

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004918            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (724)
                      |.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...    ........
T Consensus         3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~   77 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS   77 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence            67788 78999999999988999999999999999999999999999999999999999999975321    11111222


Q ss_pred             HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHc
Q 004918           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (724)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~lt  165 (724)
                      ..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..++++|+++
T Consensus        78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt  155 (251)
T TIGR03189        78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS  155 (251)
T ss_pred             HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence            33455 6689999999999999999999999999999999999999999999999997 457899999999999999999


Q ss_pred             CCCCCHHHHHHCCCcceecCcchHHHHHHHH-HHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004918          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (724)
                      |++++|+||+++||||+|+|+.+  +++.++ ++++++.|+.+++                                   
T Consensus       156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~-----------------------------------  198 (251)
T TIGR03189       156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR-----------------------------------  198 (251)
T ss_pred             CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            99999999999999999997544  466665 6889988875443                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l-~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                       ..|++++.....++++++ ..|...+..++.|+|+++++++|++||++.+
T Consensus       199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  248 (251)
T TIGR03189       199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW  248 (251)
T ss_pred             -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence             345667666667777776 4788889999999999999999999998875

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-45  Score=386.17  Aligned_cols=253  Identities=22%  Similarity=0.216  Sum_probs=214.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchh-hhhc---c-
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQKV---H-   74 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~-~~~~---~-   74 (724)
                      |+++.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|+++ +...   . 
T Consensus         2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence            7788889988 8899999999995 799999999999999999999999999999999999999999986 3210   0 


Q ss_pred             CCC--c-cccc---c-h--hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccccc-CccCCc
Q 004918           75 GAG--D-VSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF  144 (724)
Q Consensus        75 ~~~--~-~~~~---~-~--~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~-G~~P~~  144 (724)
                      ...  . ...+   . .  .....+ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--  157 (298)
T PRK12478         81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--  157 (298)
T ss_pred             cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence            000  0 0111   0 0  011234 45889999999999999999999999999999999999999999997 9876  


Q ss_pred             chhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHH
Q 004918          145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR  224 (724)
Q Consensus       145 g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~  224 (724)
                      ++++  .+++|..+|++|++||++++|+||+++||||+|||++++++++.+++++|++.|+.+++               
T Consensus       158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------  220 (298)
T PRK12478        158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ---------------  220 (298)
T ss_pred             hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence            3333  35699999999999999999999999999999999999999999999999998876543               


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHhhhhcCC
Q 004918          225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV  295 (724)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~~~af~~~r~~~~~  295 (724)
                                           ..|++++.... .+++++++.|...+..++.|+|++        |++.+|++||+|...
T Consensus       221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~  279 (298)
T PRK12478        221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG  279 (298)
T ss_pred             ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence                                 34667776655 468999999999999999999998        599999999998754

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.5e-45  Score=381.19  Aligned_cols=252  Identities=37%  Similarity=0.577  Sum_probs=218.2

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      .++.+.++. .++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~   81 (257)
T COG1024           3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE   81 (257)
T ss_pred             CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence            456788888 6779999999996 69999999999999999999999999999999999999999999987511111111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      ......+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus        82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~  160 (257)
T COG1024          82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK  160 (257)
T ss_pred             HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence            2223333456 679999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      +|++||+.++++||+++||||+++++ +++++.+.+++++++. ++.+++                              
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~------------------------------  209 (257)
T COG1024         161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALA------------------------------  209 (257)
T ss_pred             HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHH------------------------------
Confidence            99999999999999999999999985 7999999999999987 443222                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                            .+|..++.+...++++.+..|...+...+.++|++|++++|++ |++.
T Consensus       210 ------~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~  256 (257)
T COG1024         210 ------ATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV  256 (257)
T ss_pred             ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence                  3456667776666889999999999999999999999999999 6553

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-45  Score=381.92  Aligned_cols=251  Identities=27%  Similarity=0.430  Sum_probs=219.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus         2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~   79 (262)
T PRK07509          2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKL   79 (262)
T ss_pred             CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhh
Confidence            35788998 8899999999995 79999999999999999999999999999999999999999999876422111 111


Q ss_pred             cc-------hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccc
Q 004918           82 MP-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (724)
Q Consensus        82 ~~-------~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~  154 (724)
                      ..       ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~  158 (262)
T PRK07509         80 LFKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV  158 (262)
T ss_pred             HhhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence            11       1122333 557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004918          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (724)
Q Consensus       155 G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (724)
                      |..++++|+++|++++|+||+++||||+|++  ++.+++.++++++++.++..++                         
T Consensus       159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~-------------------------  211 (262)
T PRK07509        159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA-------------------------  211 (262)
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            9999999999999999999999999999995  3688999999999998875433                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                 .+|+.++.....++++++..|.+.+..++.++|+++++.+|++||+|..
T Consensus       212 -----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  260 (262)
T PRK07509        212 -----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF  260 (262)
T ss_pred             -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                       4466777777778899999999999999999999999999999988754

>PLN02921 naphthoate synthase

Probab=100.00  E-value=2.6e-45  Score=387.61  Aligned_cols=254  Identities=27%  Similarity=0.309  Sum_probs=214.2

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcc
Q 004918            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      ++.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus        64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~  142 (327)
T PLN02921         64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P  142 (327)
T ss_pred             CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence            456778773 5889999999996 7999999999999999999999999999999999 7999999999875321110 0


Q ss_pred             cccch-hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        80 ~~~~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus       143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~  221 (327)
T PLN02921        143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK  221 (327)
T ss_pred             hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            01111 112334 5688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|+++|++++|+||+++||||+|||++++++++.+++++|++.++.+++                             
T Consensus       222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~-----------------------------  272 (327)
T PLN02921        222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR-----------------------------  272 (327)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999876544                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                             .+|++++..... .......|...+..++.|+|++|++.+|++||+|...
T Consensus       273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~  321 (327)
T PLN02921        273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS  321 (327)
T ss_pred             -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence                   344555554332 3333444557888999999999999999999998753

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-44  Score=385.18  Aligned_cols=276  Identities=31%  Similarity=0.527  Sum_probs=246.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  385 (724)
                      +++||+|||+|.||++||..|+++|++|++||++++.++++.+.+.+......+.+.     ....+.+++.+++++ .+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence            478999999999999999999999999999999999988877665443322222111     012335566677774 58


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      ++||+||+|||++.+.++.+++++.+.++++++|+|+||++++++++..+.++.+|+++||++|+..++++|+++++.|+
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~  157 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS  157 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004918          466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG  539 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~G  539 (724)
                      +++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++| +++++||.++ .++|||   +|||+++|.+|
T Consensus       158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G  237 (311)
T PRK06130        158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG  237 (311)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence            9999999999999999999995 8899999999999999999999997 5999999999 899998   69999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccceeccCC
Q 004918          540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG  587 (724)
Q Consensus       540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~  587 (724)
                      +|++.++++.+++.++++..|++++++|+++|++|+|+|+|||+|+++
T Consensus       238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~  285 (311)
T PRK06130        238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE  285 (311)
T ss_pred             cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence            999999999999999877668999999999999999999999999754

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.7e-45  Score=374.76  Aligned_cols=243  Identities=19%  Similarity=0.252  Sum_probs=214.0

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      |.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....    ...+..
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~   76 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE   76 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence            56777 7899999999995 79999999999999999999999999999999999999999999875321    111222


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l  164 (724)
                      ....++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|. +++++++
T Consensus        77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll  154 (248)
T PRK06072         77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV  154 (248)
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence            233455 66899999999999999999999999999999999999999999999999999999999999996 8999999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (724)
                      +|++++|+||+++||||.+   +++++++.++|+++++.|+.+++                                   
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~-----------------------------------  196 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI-----------------------------------  196 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            9999999999999999953   46789999999999998865433                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                       .+|+.++.....++++.++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus       197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  245 (248)
T PRK06072        197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF  245 (248)
T ss_pred             -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence             3466777766778899999999999999999999999999999998774

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=1.6e-45  Score=379.04  Aligned_cols=243  Identities=35%  Similarity=0.559  Sum_probs=221.3

Q ss_pred             EEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhH
Q 004918            8 MEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS   86 (724)
Q Consensus         8 ~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (724)
                      +++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+....
T Consensus         2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~~   79 (245)
T PF00378_consen    2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRRF   79 (245)
T ss_dssp             EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHHH
T ss_pred             EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchhh
Confidence            677 899999999999 68999999999999999999999999999999999999999999998775 222233444556


Q ss_pred             HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcC
Q 004918           87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS  166 (724)
Q Consensus        87 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg  166 (724)
                      ..++ .++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|..++++++++|
T Consensus        80 ~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g  158 (245)
T PF00378_consen   80 QELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTG  158 (245)
T ss_dssp             HHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccccc
Confidence            6666 779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004918          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA  246 (724)
Q Consensus       167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  246 (724)
                      ++++|+||+++||||+|+|++++.+.+.+++++++..++.+++                                    .
T Consensus       159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------~  202 (245)
T PF00378_consen  159 EPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------A  202 (245)
T ss_dssp             CEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------H
T ss_pred             ccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------H
Confidence            9999999999999999999999999999999999999875443                                    4


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004918          247 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (724)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~  289 (724)
                      +|+.++......+.+.++.|.+.+..++.++|+++++++|+||
T Consensus       203 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  203 TKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            5677777777888999999999999999999999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-44  Score=372.27  Aligned_cols=245  Identities=21%  Similarity=0.284  Sum_probs=220.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |.++.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   78 (249)
T PRK07110          2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK--   78 (249)
T ss_pred             CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence            6788888888 8899999999995 79999999999999999999999999999999999999999999876432211  


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+. . ..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus        79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence            1111 1 3455 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++++||+++||||+|+|++++.+++.++++++++.|+.+++                              
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  205 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------  205 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~  287 (724)
                            .+|+.++.....+++++++.|...+..++.|+|++|+++...
T Consensus       206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence                  457778887788899999999999999999999999998653

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-45  Score=371.79  Aligned_cols=238  Identities=25%  Similarity=0.382  Sum_probs=208.2

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      +.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++...      ...+..
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~   73 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD   73 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence            56777 7899999999995 7999999999999999999865 9999999999999999999985311      111222


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l  164 (724)
                      ...+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l  152 (243)
T PRK07854         74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL  152 (243)
T ss_pred             HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence            334455 6689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (724)
                      +|++++|+||+++||||+|++   +. ++.++++++++.|+.+++                                   
T Consensus       153 tg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~-----------------------------------  193 (243)
T PRK07854        153 GAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQ-----------------------------------  193 (243)
T ss_pred             cCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHH-----------------------------------
Confidence            999999999999999999975   22 789999999998875433                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                       .+|+.++..  .+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus       194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  240 (243)
T PRK07854        194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF  240 (243)
T ss_pred             -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence             345666654  56889999999999999999999999999999988764

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.3e-44  Score=373.12  Aligned_cols=250  Identities=18%  Similarity=0.211  Sum_probs=213.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++  +++|+|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~   77 (255)
T PRK07112          1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA   77 (255)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence            7889999999 8899999999995 79999999999999999998  369999999999999999999988642211111


Q ss_pred             c-ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        80 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      . .......+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus        78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~  155 (255)
T PRK07112         78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK  155 (255)
T ss_pred             hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence            1 1112233455 678999999999999999999999999999999999999999999999999865 567999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      +++|+++|++++|+||+++||||+|||+++.  .+.++++++++.++.+++                             
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~-----------------------------  204 (255)
T PRK07112        156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA-----------------------------  204 (255)
T ss_pred             HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence            9999999999999999999999999987663  578889999988875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|+.++.. ...+.++++.|.+.+..++.|+|+++++.+|++||+|..
T Consensus       205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  252 (255)
T PRK07112        205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW  252 (255)
T ss_pred             -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence                   334555543 345788999999999999999999999999999988764

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-44  Score=375.07  Aligned_cols=250  Identities=25%  Similarity=0.346  Sum_probs=217.3

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhcc-CCCc-cc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS   80 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~   80 (724)
                      +.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ...+ ..
T Consensus         6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (260)
T PRK07827          6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV   84 (260)
T ss_pred             cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence            4577887 7899999999995 79999999999999999999999999999999999999999999875421 1111 11


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .+++
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~-~~a~  162 (260)
T PRK07827         85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP-RAAA  162 (260)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH-HHHH
Confidence            1222334455 6789999999999999999999999999999999999999999999999999999999998754 6899


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|+++|++++|+||+++||||++++  ++.+++.++++++++.++.+++                               
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~-------------------------------  209 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA-------------------------------  209 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999974  5999999999999998865433                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                           .+|+.++......+++.++.|...+..++.|+++++++++|++||+|+.
T Consensus       210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~  258 (260)
T PRK07827        210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW  258 (260)
T ss_pred             -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                 4567777777778899999999999999999999999999999987653

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=8.9e-45  Score=387.73  Aligned_cols=286  Identities=23%  Similarity=0.338  Sum_probs=219.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc-
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS-   80 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~-   80 (724)
                      +.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......... 
T Consensus         3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            4688888 7899999999995 7999999999999999999999999999999999 8999999999875422111110 


Q ss_pred             --ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           81 --LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        81 --~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                        .+.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+
T Consensus        82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~  159 (342)
T PRK05617         82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL  159 (342)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence              1112223444 6689999999999999999999999999999999999999999999999999999999999977 78


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHH------------HHHccC---c--------hhhhhhhccC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRTD  215 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~la~~~---~--------~~~~~~~~~~  215 (724)
                      |++|++||++++|+||+++||||+|+|++++.+...+++.            .+...+   +        ..+.+.... 
T Consensus       160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  238 (342)
T PRK05617        160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG-  238 (342)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-
Confidence            9999999999999999999999999999998776443331            111100   0        001111100 


Q ss_pred             CCCCcHHHHHHHH-----HHHHHHHHhC-CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-H
Q 004918          216 KLGSLSEAREVLK-----LARLQAKKTA-PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-A  288 (724)
Q Consensus       216 ~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~-~  288 (724)
                        .+.....+.++     .+....++.. ..-.+...+|++++.....+++++++.|...+..++.|+|+++++++|+ +
T Consensus       239 --~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~e  316 (342)
T PRK05617        239 --DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLID  316 (342)
T ss_pred             --CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEc
Confidence              11111111111     1222222222 2334667789999988888999999999999999999999999999997 7


Q ss_pred             h-hhhcCC
Q 004918          289 Q-RATSKV  295 (724)
Q Consensus       289 ~-r~~~~~  295 (724)
                      | |+|++.
T Consensus       317 k~r~p~~~  324 (342)
T PRK05617        317 KDRNPKWS  324 (342)
T ss_pred             CCCCCCCC
Confidence            6 766653

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=6.7e-44  Score=375.62  Aligned_cols=253  Identities=24%  Similarity=0.302  Sum_probs=211.5

Q ss_pred             cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCccCCCCchhhhhcc-
Q 004918            5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH-   74 (724)
Q Consensus         5 ~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-------~~F~aG~Dl~~~~~~~-   74 (724)
                      ++.++.+ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|       ++||+|+|++++.... 
T Consensus        24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~  103 (302)
T PRK08321         24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY  103 (302)
T ss_pred             eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence            4666653 5789999999996 6999999999999999999999999999999998       5899999999763210 


Q ss_pred             ---CCC--cc-c--ccchh-HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCccCCc
Q 004918           75 ---GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGF  144 (724)
Q Consensus        75 ---~~~--~~-~--~~~~~-~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~P~~  144 (724)
                         ...  .. .  ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~  182 (302)
T PRK08321        104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG  182 (302)
T ss_pred             cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence               000  00 0  00011 11233 56889999999999999999999999999999999 699999999999999999


Q ss_pred             chhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHH
Q 004918          145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR  224 (724)
Q Consensus       145 g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~  224 (724)
                      +++++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.+++++|++.++.+++               
T Consensus       183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------  247 (302)
T PRK08321        183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR---------------  247 (302)
T ss_pred             hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence            99999999999999999999999999999999999999999999999999999999998876543               


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                                           .+|++++..... .......|.+.+..++.++++++++.+|++||+|.+.
T Consensus       248 ---------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~  296 (302)
T PRK08321        248 ---------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWS  296 (302)
T ss_pred             ---------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence                                 345555554332 3444556888999999999999999999999988753

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=6.3e-44  Score=385.52  Aligned_cols=290  Identities=23%  Similarity=0.264  Sum_probs=217.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-cc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (724)
                      ++.+.++. +++|++||||||+ +|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   88 (379)
T PLN02874         10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL   88 (379)
T ss_pred             CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence            35688888 7899999999996 699999999999999999999999999999999999999999998854221111 11


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      ........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .++
T Consensus        89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~  166 (379)
T PLN02874         89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE  166 (379)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence            1111112233 56889999999999999999999999999999999999999999999999999999999999985 899


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhc----------------------cCCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR----------------------TDKLG  218 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~----------------------~~~~~  218 (724)
                      +|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+....+                      .-...
T Consensus       167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  245 (379)
T PLN02874        167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD  245 (379)
T ss_pred             HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988876322221 000000000000000                      00000


Q ss_pred             CcHHHHHHHH---------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 004918          219 SLSEAREVLK---------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV  285 (724)
Q Consensus       219 ~~~~~~~~~~---------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~a  285 (724)
                      +.......+.         .+....++....-| +...+|++++.+...+++++++.|......++.   ++|++|++++
T Consensus       246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A  325 (379)
T PLN02874        246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA  325 (379)
T ss_pred             CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence            1111111111         11223333333334 556778999998888999999999888888877   9999999999


Q ss_pred             HH-Hh-hhhcCCC
Q 004918          286 FF-AQ-RATSKVP  296 (724)
Q Consensus       286 f~-~~-r~~~~~~  296 (724)
                      |+ +| |+|++.+
T Consensus       326 flidK~r~P~w~~  338 (379)
T PLN02874        326 LVIDKDNAPKWNP  338 (379)
T ss_pred             EEEcCCCCCCCCC
Confidence            97 77 7777643

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=4.2e-43  Score=391.96  Aligned_cols=254  Identities=15%  Similarity=0.157  Sum_probs=220.1

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-CccCCC
Q 004918            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF   65 (724)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-d~~v~~vVl~g~g~-~F~aG~   65 (724)
                      |.+|.++.+ +++|++||||||+ .             |+||.+|+++|.++++.++. |+++|+|||||.|+ .||+|+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~  338 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA  338 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence            445555553 5789999999995 5             79999999999999999986 79999999999994 999999


Q ss_pred             CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC-ccccchh-HHHHhhcCEEEEe-------CCceeeCccc
Q 004918           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL  136 (724)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~a~GgG-~~lalacD~ria~-------~~a~f~~pe~  136 (724)
                      |++.+.. .............+.++ .+|.++||||||+|| |+|+||| ++|+|+||+|||+       ++++|++||+
T Consensus       339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~  416 (550)
T PRK08184        339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL  416 (550)
T ss_pred             Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence            9874321 11100111122333455 679999999999997 9999999 9999999999999       9999999999


Q ss_pred             ccCccCCcchhhhhccc-ccHHHHHHH--HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004918          137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  213 (724)
Q Consensus       137 ~~G~~P~~g~~~~l~r~-~G~~~a~~l--~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~  213 (724)
                      ++|++|++|++++|+|+ +|..+|++|  +++|++++|+||+++||||+|||++++++++.++++++++.||.+++    
T Consensus       417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~----  492 (550)
T PRK08184        417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT----  492 (550)
T ss_pred             cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence            99999999999999998 699999997  58999999999999999999999999999999999999999886544    


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004918          214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  289 (724)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~~~af~~~  289 (724)
                                                      .+|++++.+...+++++ +..|.+.|..+++|+|++|   ++++|++|
T Consensus       493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  540 (550)
T PRK08184        493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG  540 (550)
T ss_pred             --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence                                            45778888888999999 9999999999999999999   99999999


Q ss_pred             hhhcC
Q 004918          290 RATSK  294 (724)
Q Consensus       290 r~~~~  294 (724)
                      |+|+.
T Consensus       541 r~~~f  545 (550)
T PRK08184        541 QKAQF  545 (550)
T ss_pred             CCCCC
Confidence            99875

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=5.5e-43  Score=389.40  Aligned_cols=254  Identities=16%  Similarity=0.136  Sum_probs=219.8

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-ccCCC
Q 004918            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF   65 (724)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~g~~-F~aG~   65 (724)
                      |.+|.+..+ +++|++||||||+ .             |+||.+|+.+|.++++.++ +|+++|+|||||.|+. ||+|+
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~  334 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA  334 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence            344444432 6789999999995 7             9999999999999999998 4599999999999987 99999


Q ss_pred             CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE-Cccccchh-HHHHhhcCEEEE-------eCCceeeCccc
Q 004918           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL  136 (724)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~a~GgG-~~lalacD~ria-------~~~a~f~~pe~  136 (724)
                      |++.... .............++++ .+|.++||||||+| ||+|+||| ++|+++||+||+       +++++|++||+
T Consensus       335 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~  412 (546)
T TIGR03222       335 DALLEAH-KDHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL  412 (546)
T ss_pred             Ccccccc-ccchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence            9984321 11111111112233455 67999999999999 89999999 999999999999       89999999999


Q ss_pred             ccCccCCcchhhhhcccc-cHHHH--HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004918          137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  213 (724)
Q Consensus       137 ~~G~~P~~g~~~~l~r~~-G~~~a--~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~  213 (724)
                      ++|++|++|++++|++++ |..++  ++|++||++|+|+||+++|||++|+|++++++++.++++++++.||.+++    
T Consensus       413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----  488 (546)
T TIGR03222       413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT----  488 (546)
T ss_pred             ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence            999999999999999998 99999  55999999999999999999999999999999999999999999886544    


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004918          214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  289 (724)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~~~af~~~  289 (724)
                                                      .+|+.++.+...+++.+ +..|.+.|..++.|+|++|   ++++|++|
T Consensus       489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  536 (546)
T TIGR03222       489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG  536 (546)
T ss_pred             --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence                                            45677888888899999 9999999999999999999   99999999


Q ss_pred             hhhcC
Q 004918          290 RATSK  294 (724)
Q Consensus       290 r~~~~  294 (724)
                      |+|+.
T Consensus       537 r~p~f  541 (546)
T TIGR03222       537 KKAQF  541 (546)
T ss_pred             CCCCC
Confidence            99864

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=330.56  Aligned_cols=245  Identities=29%  Similarity=0.470  Sum_probs=219.1

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004918           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (724)
Q Consensus        12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (724)
                      ++||.+|-+||| +.|+|+.-|+++|.++++++..|+.+|+|+|++ .++.||+|+||+|-..++.+ ++..+...+..+
T Consensus        38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~-Ev~~fV~~lR~~  116 (291)
T KOG1679|consen   38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPS-EVTRFVNGLRGL  116 (291)
T ss_pred             CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHH-HHHHHHHHHHHH
Confidence            679999999999 589999999999999999999999999999965 56789999999998776433 344455555566


Q ss_pred             HHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC
Q 004918           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (724)
Q Consensus        90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i  169 (724)
                      + ..|+++|.||||+|+|.|+|||+||+|+||+|+|+++++|+++|.+++++||.|||+||||++|...|+|+++|++.+
T Consensus       117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl  195 (291)
T KOG1679|consen  117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL  195 (291)
T ss_pred             H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence            6 569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHCCCcceecCcc----hHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004918          170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (724)
Q Consensus       170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (724)
                      ++.||...||||+||...    ...+.+.++|+++.-+.|.+.                                    .
T Consensus       196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiav------------------------------------r  239 (291)
T KOG1679|consen  196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAV------------------------------------R  239 (291)
T ss_pred             cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhh------------------------------------h
Confidence            999999999999999765    667778888888766555332                                    2


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                      ..|.+|+.+.+.++..++..|..++++...+.|--|++.+|.+||+|..
T Consensus       240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y  288 (291)
T KOG1679|consen  240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY  288 (291)
T ss_pred             HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence            4567899999999999999999999999999999999999999999874

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.6e-42  Score=371.49  Aligned_cols=243  Identities=21%  Similarity=0.317  Sum_probs=204.3

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc---
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV---   79 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~---   79 (724)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.........   
T Consensus        37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4578888 7899999999995 7999999999999999999999999999999999999999999988643211111   


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+......++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus       116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a  193 (401)
T PLN02157        116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG  193 (401)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence            11111111233 56899999999999999999999999999999999999999999999999999999999999995 89


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||++||++++ +++.+++.+++..++..++                              
T Consensus       194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------  242 (401)
T PLN02157        194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------  242 (401)
T ss_pred             HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence            999999999999999999999999999998 6777999998876653322                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~  287 (724)
                            .+|+.+... ..+....+..|...+..++.+++.++.+.+|.
T Consensus       243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~  283 (401)
T PLN02157        243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE  283 (401)
T ss_pred             ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence                  234444433 23455677888899999999999999999993

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.8e-42  Score=348.86  Aligned_cols=205  Identities=29%  Similarity=0.465  Sum_probs=182.2

Q ss_pred             CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         3 ~~~v~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+.|.++..    +++|++||||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... .+
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~   80 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QE   80 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hh
Confidence            456666663    4889999999998899999999999999999999999999999999999999999998754321 11


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ........++++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~  159 (222)
T PRK05869         81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR  159 (222)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence            111222334556 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (724)
                      +++++++|++++|+||+++||||+|+|++++++++.+++++++..++.+++
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~  210 (222)
T PRK05869        160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA  210 (222)
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999876543

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-42  Score=359.86  Aligned_cols=238  Identities=26%  Similarity=0.321  Sum_probs=202.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC---
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---   76 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---   76 (724)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......   
T Consensus         1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence            8999999998 8899999999996 6999999999999999999999999999999999999999999987421110   


Q ss_pred             --------------Cccc-cc---chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccccc
Q 004918           77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (724)
Q Consensus        77 --------------~~~~-~~---~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~  138 (724)
                                    .... .+   ......++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                          0000 01   01122334 56889999999999999999999999999999999999999999999


Q ss_pred             CccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC
Q 004918          139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG  218 (724)
Q Consensus       139 G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~  218 (724)
                      |+ |+ .+++++++++|+.++++|++||++++|+||+++||||+|||++++++++.++++++++.|+.+++         
T Consensus       159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------  227 (288)
T PRK08290        159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR---------  227 (288)
T ss_pred             Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence            98 54 45677899999999999999999999999999999999999999999999999999999875443         


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 004918          219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT  278 (724)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~-~s~~  278 (724)
                                                 .+|+.++..... +++++++.|...+...+ .+++
T Consensus       228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence                                       345666666554 68999999999888877 6665

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.4e-40  Score=357.39  Aligned_cols=291  Identities=21%  Similarity=0.289  Sum_probs=224.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      +.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus         7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~   85 (381)
T PLN02988          7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR   85 (381)
T ss_pred             cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence            345788887 7899999999996 69999999999999999999999999999999999999999999885321111110


Q ss_pred             ---ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        81 ---~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                         .+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. 
T Consensus        86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-  163 (381)
T PLN02988         86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-  163 (381)
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence               1111111222 56889999999999999999999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhcc---CC---C--------------
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK---L--------------  217 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~---~~---~--------------  217 (724)
                      .+++|++||++++|++|+++||+|++||++++.+.+.+++ +++..++...+..++.   ..   .              
T Consensus       164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f  242 (381)
T PLN02988        164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF  242 (381)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence            6999999999999999999999999999999999988888 6666554433322111   00   0              


Q ss_pred             --CCcHHHHHHHHH---------HHHHHHHhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Q 004918          218 --GSLSEAREVLKL---------ARLQAKKTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL  282 (724)
Q Consensus       218 --~~~~~~~~~~~~---------~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~  282 (724)
                        .++....+.+..         ++...+.....-|. ...+.+.++.+...++.+.++.|.+.-..+..   ++|+.||
T Consensus       243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG  322 (381)
T PLN02988        243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG  322 (381)
T ss_pred             CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence              011111111111         11112222233443 34567888889999999999999999999988   6999999


Q ss_pred             HHHHHH-h-hhhcCCC
Q 004918          283 VHVFFA-Q-RATSKVP  296 (724)
Q Consensus       283 ~~af~~-~-r~~~~~~  296 (724)
                      |++-+- | +.|+++|
T Consensus       323 VRA~LiDKd~~P~W~p  338 (381)
T PLN02988        323 CRAILVDKDKNPKWEP  338 (381)
T ss_pred             HHHHhcCCCCCCCCCC
Confidence            999876 3 3455443

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-41  Score=342.39  Aligned_cols=201  Identities=27%  Similarity=0.376  Sum_probs=178.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      |+ +.+.++. +++|++||||||+.|++|.+|+++|.++++.++  +++|+||+||.|++||+|+|++++...  .....
T Consensus         1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~   74 (229)
T PRK06213          1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI   74 (229)
T ss_pred             Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence            53 4688888 789999999999899999999999999999998  467999999999999999999987542  11111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .+.....+++ +++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+++++.++++++|...+
T Consensus        75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a  153 (229)
T PRK06213         75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF  153 (229)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence            2223344556 6789999999999999999999999999999999999 9999999999999888888889999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhh
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI  208 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~  208 (724)
                      ++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus       154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  202 (229)
T PRK06213        154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAH  202 (229)
T ss_pred             HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999999999999999999999887544

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.5e-40  Score=345.11  Aligned_cols=243  Identities=23%  Similarity=0.265  Sum_probs=194.0

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCccCCCCchhhhhccCCCc
Q 004918            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |.++. +++|++|||| | +.|+||.+|+++|.++++++++     |+++|+|||||. |++||+|+|++++.......+
T Consensus        19 i~~e~-~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~   96 (287)
T PRK08788         19 VYYEE-ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD   96 (287)
T ss_pred             EEEEc-cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence            34444 6889999996 6 5899999999999999999998     899999999999 789999999998753211111


Q ss_pred             ccccch---hHHHHHHHHHh---cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcc
Q 004918           79 VSLMPD---VSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR  152 (724)
Q Consensus        79 ~~~~~~---~~~~~~~~~l~---~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r  152 (724)
                      ...+..   ...+.+ ..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus        97 ~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~  175 (287)
T PRK08788         97 RDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR  175 (287)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence            111111   111222 2233   799999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004918          153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (724)
Q Consensus       153 ~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (724)
                      ++|..++++|++||++++|+||+++||||+++|++++.+++.+++++++.. +....                       
T Consensus       176 ~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~-----------------------  231 (287)
T PRK08788        176 RVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR-----------------------  231 (287)
T ss_pred             HhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-----------------------
Confidence            999999999999999999999999999999999999999999999999976 32211                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH
Q 004918          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA  288 (724)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~-~~~~~~~af~~  288 (724)
                                   .+|+..+.....++++.++.|...+..++++. ..++-+..|..
T Consensus       232 -------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        232 -------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             -------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence                         22233333334578888888877777655544 44556666663

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-40  Score=348.44  Aligned_cols=203  Identities=26%  Similarity=0.344  Sum_probs=175.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC---
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (724)
                      ++++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......   
T Consensus         8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~   86 (302)
T PRK08272          8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG   86 (302)
T ss_pred             CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence            467789998 7899999999995 79999999999999999999999999999999999999999999886422100   


Q ss_pred             c----------------cc-----ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccc
Q 004918           78 D----------------VS-----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL  136 (724)
Q Consensus        78 ~----------------~~-----~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~  136 (724)
                      .                ..     .......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~  165 (302)
T PRK08272         87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT  165 (302)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence            0                00     0012223445 568899999999999999999999999999999999999999999


Q ss_pred             ccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004918          137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (724)
Q Consensus       137 ~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (724)
                      ++|.+|..   .++++++|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++
T Consensus       166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~  235 (302)
T PRK08272        166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA  235 (302)
T ss_pred             hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            98666643   35788999999999999999999999999999999999999999999999999999886554

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.2e-38  Score=342.85  Aligned_cols=281  Identities=22%  Similarity=0.260  Sum_probs=216.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---c
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~   79 (724)
                      +.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........   .
T Consensus        42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~  120 (407)
T PLN02851         42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC  120 (407)
T ss_pred             CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            3577888 7899999999996 799999999999999999999999999999999999999999999865321111   1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+.....++. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus       121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g  198 (407)
T PLN02851        121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG  198 (407)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence            11122222333 56889999999999999999999999999999999999999999999999999999999999997 59


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhh-c--cC-------------------CC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH-R--TD-------------------KL  217 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~-~--~~-------------------~~  217 (724)
                      ++|++||+++++++|+++||+|++||++++ +.+.+.+.++...++..+.... .  ..                   ..
T Consensus       199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~  277 (407)
T PLN02851        199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH  277 (407)
T ss_pred             HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence            999999999999999999999999999987 5666666655444322222110 0  00                   00


Q ss_pred             CCcHHHHHHHHH---------HHHHHHHhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 004918          218 GSLSEAREVLKL---------ARLQAKKTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH  284 (724)
Q Consensus       218 ~~~~~~~~~~~~---------~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~~~  284 (724)
                      .++....+.+..         +....+.....-|- ...+.+.++.+...++++.++.|.+.-..++   .++|+.|||+
T Consensus       278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR  357 (407)
T PLN02851        278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR  357 (407)
T ss_pred             CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            111111111111         11112222233443 4456788889999999999999999888877   4899999999


Q ss_pred             HHHH
Q 004918          285 VFFA  288 (724)
Q Consensus       285 af~~  288 (724)
                      +-+-
T Consensus       358 A~LI  361 (407)
T PLN02851        358 ARLV  361 (407)
T ss_pred             HHhc
Confidence            9886

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.5e-38  Score=334.97  Aligned_cols=262  Identities=25%  Similarity=0.348  Sum_probs=244.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++..+....+.++..++++ ++++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            568999999999999999999999999999999999999999999889889999999888888888899888888 4679


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||+||+|+|++.++++.+++++.+.++++++|+|+||++++++++..+.++.++++.||++|++.++++|+++++.|++
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~  161 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP  161 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004918          467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA--  538 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~--  538 (724)
                      ++++.++++++.+|++|+++ ++.|||++||++.++++||+.++++| +++++||.++ .++|++   +|||++.|..  
T Consensus       162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~  241 (308)
T PRK06129        162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP  241 (308)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence            99999999999999999999 58999999999999999999999997 5999999999 889988   8999999987  


Q ss_pred             -chHHHHHHHHHHHHhCCCCCC-CcHHHHHHHH
Q 004918          539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK  569 (724)
Q Consensus       539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~  569 (724)
                       |++........++.++++..+ |+|++++|++
T Consensus       242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK06129        242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA  274 (308)
T ss_pred             ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence             899999999999988887655 7888888877

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=5.5e-39  Score=334.65  Aligned_cols=274  Identities=21%  Similarity=0.273  Sum_probs=198.6

Q ss_pred             EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCC--CcccccchhHHHHH
Q 004918           15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA--GDVSLMPDVSVELV   90 (724)
Q Consensus        15 v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~~   90 (724)
                      +++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......  .....+.....+++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            4669999996 7999999999999999999999999999999999 699999999988653211  11111222233455


Q ss_pred             HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCC
Q 004918           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~  170 (724)
                       +.|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++
T Consensus       118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence             6689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCcceecCcchH------------HHHHHHHHHHHHccCch--hhhhhhccCCCCCcHHHHHHHHHH-HHHHH
Q 004918          171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP--WIRSLHRTDKLGSLSEAREVLKLA-RLQAK  235 (724)
Q Consensus       171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  235 (724)
                      |+||+++||||+|||++++            ++.+.++++.+...++.  ..+..+..-+..+...  ..+... .....
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~--~~l~~~~~~l~~  274 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDL--SLLDEAVEALCA  274 (360)
T ss_pred             HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchH--hHHHHHHHHHHH
Confidence            9999999999999999988            78888888887777654  2222211111100000  001111 01111


Q ss_pred             HhCCCChh-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004918          236 KTAPNMPQ-HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (724)
Q Consensus       236 ~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~  292 (724)
                      +..+.||. ....++-++.-.......--..-+..++..+. -|+++++.+|-++.+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  331 (360)
T TIGR03200       275 KLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM-NEARTGFRAFNEGKKE  331 (360)
T ss_pred             HHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc-cccchhhHHHhccccc
Confidence            12222331 11112222222222223333344556666665 8899999999986443

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1e-39  Score=307.95  Aligned_cols=255  Identities=24%  Similarity=0.334  Sum_probs=221.1

Q ss_pred             CCcEEEE--EecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC---C
Q 004918            3 APRVTME--VGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A   76 (724)
Q Consensus         3 ~~~v~~~--~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~---~   76 (724)
                      |+.+.+.  ..+..|..+.|||| +.|++|..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+.....   +
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~   97 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE   97 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence            4444444  33567999999999 5899999999999999999999999999999999999999999877654211   1


Q ss_pred             -Cc-------ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh
Q 004918           77 -GD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ  148 (724)
Q Consensus        77 -~~-------~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~  148 (724)
                       .+       ..+++...++.+ ..|++||||||++|||+|+|+|+.|..|||+|+|+++|.|..-|+.+|+..+.|...
T Consensus        98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~  176 (292)
T KOG1681|consen   98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN  176 (292)
T ss_pred             cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence             11       123334455666 569999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccc-HHHHHHHHHcCCCCCHHHHHHCCCcceecC-cchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHH
Q 004918          149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV  226 (724)
Q Consensus       149 ~l~r~~G-~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~  226 (724)
                      |||..+| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|..|+.++|.+.+                 
T Consensus       177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq-----------------  239 (292)
T KOG1681|consen  177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ-----------------  239 (292)
T ss_pred             hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence            9999999 899999999999999999999999999996 478999999999999999986443                 


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                         ..|+.+..+.+++.++.|..-..+-..++.|+|..+.+.+-++|+++..
T Consensus       240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~t  288 (292)
T KOG1681|consen  240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVT  288 (292)
T ss_pred             -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence                               3467788888899999999998888889999999999999998776553

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=2.3e-38  Score=322.64  Aligned_cols=197  Identities=24%  Similarity=0.343  Sum_probs=168.8

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCccCCCCchhhhhccCCCc-ccccc
Q 004918            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (724)
                      ++++. +++|++|+||||+.|+||.+|+++|.++++.++.|++++ +||++|.|++||+|+|++++........ .....
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            56777 789999999999889999999999999999999998875 7777999999999999998753211111 11122


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCcc-CCcchhhhhcccccHHHH-H
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PGFGGTQRLPRLVGLSKA-I  160 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~-P~~g~~~~l~r~~G~~~a-~  160 (724)
                      ....+++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |+++ +.++++++|..++ +
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~vG~~~a~~  158 (239)
T PLN02267         81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKIGSPAARR  158 (239)
T ss_pred             HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHcChHHHHH
Confidence            2344555 66999999999999999999999999999999998 568999999999997 6554 7899999999999 6


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCc
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK  205 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~  205 (724)
                      +|+++|++++|+||+++||||+|+|+ +++.+++.++|+++++.++
T Consensus       159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~  204 (239)
T PLN02267        159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW  204 (239)
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999999999985 6899999999999998754

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=7.8e-38  Score=292.93  Aligned_cols=252  Identities=29%  Similarity=0.380  Sum_probs=203.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCccCCCCchhhhhc---cC
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG   75 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~--g-~~F~aG~Dl~~~~~~---~~   75 (724)
                      |..|.++..-++|+.||||||. +|++.+..+.||.+++..++.|++|.+|||||.  | ..||+|+|-+--...   ..
T Consensus        17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~   96 (282)
T COG0447          17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD   96 (282)
T ss_pred             cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence            5678899844899999999996 799999999999999999999999999999985  4 579999997644321   11


Q ss_pred             CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      +.....+   ..--+++.|+.+||||||.|+|.|+|||-.|-+-||+.||+++|+|+....++|-+-++.|+..|.|++|
T Consensus        97 d~~~~rL---nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG  173 (282)
T COG0447          97 DDGIPRL---NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG  173 (282)
T ss_pred             CccCccc---chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence            1111111   1112346689999999999999999999999999999999999999999999999987777888999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.++|-+                        
T Consensus       174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~L------------------------  229 (282)
T COG0447         174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRML------------------------  229 (282)
T ss_pred             hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999998765521                        


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                  |-+++ +...++.-.-+..-.+......|+|++|++.+|++||+|..
T Consensus       230 ------------K~Afn-ad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf  275 (282)
T COG0447         230 ------------KAAFN-ADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF  275 (282)
T ss_pred             ------------HHHhc-CCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence                        11111 11111111112222333446789999999999999999864

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2e-36  Score=294.00  Aligned_cols=253  Identities=22%  Similarity=0.282  Sum_probs=223.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |.+..+.++. ++++.+|.+| ||+ .|+++.++..++..+++.+..|+++..+|++|.|++||+|.|+..+......+.
T Consensus         4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~   82 (266)
T KOG0016|consen    4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA   82 (266)
T ss_pred             ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence            5677788888 8999999999 996 699999999999999999999999999999999999999999998876433221


Q ss_pred             ---ccccchhH--HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccc
Q 004918           79 ---VSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (724)
Q Consensus        79 ---~~~~~~~~--~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~  153 (724)
                         ........  ...+.+.+.++|||+||.|||+|+|.|..+.-.||+++|+|+++|..|+.++|+.|.+|+++.+|++
T Consensus        83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i  162 (266)
T KOG0016|consen   83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI  162 (266)
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence               11111111  1224477899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004918          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  233 (724)
Q Consensus       154 ~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (724)
                      +|...|.||++.|++++|+||.+.|||+++++.+.+.+.+..-++++++.+|..++                        
T Consensus       163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------  218 (266)
T KOG0016|consen  163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------  218 (266)
T ss_pred             hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999998876544                        


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004918          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (724)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r  290 (724)
                                  .+|++++......+..+.+.|.......|.|+|+.+.+.+|+.+.
T Consensus       219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence                        346777777778889999999999999999999999999999754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=1.3e-36  Score=295.92  Aligned_cols=180  Identities=40%  Similarity=0.620  Sum_probs=161.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..++++.+++++....+++++++++++++.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998878999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHH
Q 004918          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI  469 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~  469 (724)
                      +||||+||+.++|+++|+++++.+++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeeEEEcCC
Q 004918          470 LDLMTVGKIIKKVPVVVGNC  489 (724)
Q Consensus       470 ~~~~~l~~~lGk~~v~v~d~  489 (724)
                      +++.+|++.+||.|++++|+
T Consensus       161 ~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES-
T ss_pred             HHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999873

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=6e-35  Score=328.17  Aligned_cols=244  Identities=25%  Similarity=0.325  Sum_probs=208.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      +++||+|||+|+||++||..|+++|++|++||+++++++...+.++......   +.+.... ....+++++++++ +++
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence            3679999999999999999999999999999999999876543332221111   1111110 1123456777777 578


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      ++||+||+|+||+.++|+++|+++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++++.|+
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999989899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004918          466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG  539 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~---~Gp~~~~D~~G  539 (724)
                      +++++.++++++.+|+.++++ ++.|||++||++.++++||+.++++| +++++||+++ .++|++   +|||+++|+.|
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g  238 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG  238 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence            999999999999999999999 59999999999999999999999997 5999999999 788875   79999999998


Q ss_pred             h-HHHHHHHHHHHHhC
Q 004918          540 Y-GVAAATSKEFDKAF  554 (724)
Q Consensus       540 l-d~~~~~~~~l~~~~  554 (724)
                      + +.+.+.++++.+.+
T Consensus       239 ~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        239 GEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cHHHHHHHHHHhchhh
Confidence            5 45666666665544

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=7.4e-36  Score=276.65  Aligned_cols=245  Identities=23%  Similarity=0.343  Sum_probs=210.6

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004918           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (724)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (724)
                      +++|-.|+||+|+ +|+++..|+.+|.+.+.....+.++|+|||+..|+.||+|.||+|+...+........+....+.+
T Consensus        39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm  118 (287)
T KOG1682|consen   39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM  118 (287)
T ss_pred             ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence            6899999999995 899999999999999999888889999999999999999999999986443332334444455666


Q ss_pred             HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCC
Q 004918           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~  170 (724)
                       +-|+++|+||||-|||.|..+||.|...||+++|+++++|..|..++|++-...|.. |.|.+++..+.+|++||.+|+
T Consensus       119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRkva~~ML~Tg~Pi~  196 (287)
T KOG1682|consen  119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRKVAAYMLMTGLPIT  196 (287)
T ss_pred             -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-HhhhcchhHHHHHHHhCCCCc
Confidence             559999999999999999999999999999999999999999999999976555544 889999999999999999999


Q ss_pred             HHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004918          171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV  250 (724)
Q Consensus       171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  250 (724)
                      ++||+..||+++|||.+++..++.+++.+|...+...+.            ..                        |+.
T Consensus       197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lg------------------------k~f  240 (287)
T KOG1682|consen  197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LG------------------------KEF  240 (287)
T ss_pred             hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HH------------------------HHH
Confidence            999999999999999999999999999999877654322            11                        223


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       251 ~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                      .+....++..+++....+.+...++-.|++|+|.+|++||.+.+
T Consensus       241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~  284 (287)
T KOG1682|consen  241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW  284 (287)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence            33444456667788888899999999999999999999998875

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.7e-35  Score=329.54  Aligned_cols=202  Identities=22%  Similarity=0.323  Sum_probs=174.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCccCCCCchh
Q 004918            3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV   69 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~-g~~F~aG~Dl~~   69 (724)
                      +++|.++. +++|++||||||           +.|++|.+|+.+|.++++.++ .|+++|+|||||. |++||+|+|+++
T Consensus        10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~   88 (546)
T TIGR03222        10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM   88 (546)
T ss_pred             CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence            45788888 789999999996           469999999999999999999 7899999999987 589999999998


Q ss_pred             hhhccCCCcccccchhH---HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccc-cCccCC
Q 004918           70 FQKVHGAGDVSLMPDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG  143 (724)
Q Consensus        70 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~G~~P~  143 (724)
                      +....... ........   .+.+.+.+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|+
T Consensus        89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~  167 (546)
T TIGR03222        89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG  167 (546)
T ss_pred             Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence            75321111 11111111   112224577899999999999999999999999999999986  799999997 999999


Q ss_pred             cchhhhhc--ccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCch
Q 004918          144 FGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  206 (724)
Q Consensus       144 ~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (724)
                      +|++++++  +++|..+|++|+++|++++|+||+++||||+|||++++++++.++|+++++.|+.
T Consensus       168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~  232 (546)
T TIGR03222       168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR  232 (546)
T ss_pred             cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence            99999997  7999999999999999999999999999999999999999999999999998764

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.2e-35  Score=329.98  Aligned_cols=204  Identities=22%  Similarity=0.308  Sum_probs=176.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCccCCCCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI   67 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~g-~~F~aG~Dl   67 (724)
                      |+++++.++. +++|++||||||           +.|++|.+|+.+|.+++++++ .|+++|+|||||.+ ++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            6788899999 789999999954           469999999999999999999 78999999999974 899999999


Q ss_pred             hhhhhccCCCcccccch---hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccc-cCcc
Q 004918           68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI  141 (724)
Q Consensus        68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~G~~  141 (724)
                      +++....... ......   .....+.+.+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            9875321111 001111   11122325678899999999999999999999999999999987  899999997 9999


Q ss_pred             CCcchhhhhc--ccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCch
Q 004918          142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  206 (724)
Q Consensus       142 P~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (724)
                      |++|++++|+  +++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++.+|++.++.
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998  7899999999999999999999999999999999999999999999999998864

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=2.7e-35  Score=292.74  Aligned_cols=192  Identities=44%  Similarity=0.704  Sum_probs=173.6

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-ccccc
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (724)
                      +.+++ +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.|+.||+|+|++++.......+ ...+.
T Consensus         1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~   79 (195)
T cd06558           1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI   79 (195)
T ss_pred             CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence            35667 6799999999997 899999999999999999999999999999999999999999999876433221 22344


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~  163 (724)
                      ....+++ +.+..+|||+||++||+|.|+|++++++|||||++++++|++||+++|++|++|++++|++++|...+++++
T Consensus        80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            4455666 678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHH
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD  199 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~  199 (724)
                      ++|++++++||+++||||++++.+++.+++.+++++
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence            999999999999999999999999999999988875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-34  Score=273.20  Aligned_cols=229  Identities=25%  Similarity=0.408  Sum_probs=212.7

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhc----CCCCHHHHHHhhcCcccccCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR----GKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      .+.||+|+|.|..|+++|..|+..||+|.+||+.++++..+.+.+++.+.++-+.    |.++.   ++.+..|..++++
T Consensus         2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l   78 (313)
T KOG2305|consen    2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSL   78 (313)
T ss_pred             CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccH
Confidence            4689999999999999999999999999999999999999999999988877664    55554   4456788889998


Q ss_pred             -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecC
Q 004918          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT  461 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~  461 (724)
                       |.+++|=.|-|||||++.+|+.+|++++..+.+.+|++|+||++.++...+.+.+.++++..||.|||+..|+||++|.
T Consensus        79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPa  158 (313)
T KOG2305|consen   79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPA  158 (313)
T ss_pred             HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccC
Confidence             6789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHH
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLL  535 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~---Gp~~~~  535 (724)
                      +-|+++++++.+++++.+|..||.. .+.-||.+||++++++||-.+++..|+ +..|+|.+| .|+|++.   ||+|.+
T Consensus       159 PwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~  238 (313)
T KOG2305|consen  159 PWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA  238 (313)
T ss_pred             CCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence            9999999999999999999999987 689999999999999999999999997 999999999 8999763   999998


Q ss_pred             Hhh
Q 004918          536 DLA  538 (724)
Q Consensus       536 D~~  538 (724)
                      .+-
T Consensus       239 HLN  241 (313)
T KOG2305|consen  239 HLN  241 (313)
T ss_pred             hcC
Confidence            874

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=2e-30  Score=261.64  Aligned_cols=289  Identities=24%  Similarity=0.308  Sum_probs=216.2

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccCCCCchhhhhccCCCc---
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD---   78 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~---   78 (724)
                      +.|.++. .+....||||||+ .||+|.+|...+.-.+..++.++.+++||+.|. |++||+|+|+........+.+   
T Consensus        38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~  116 (401)
T KOG1684|consen   38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE  116 (401)
T ss_pred             CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence            4678888 7889999999997 799999999999999999999999999999877 589999999986654322221   


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...++..--.+. ..|.++.||.||.++|..+|||++|+.+--||||++++.|.+||..+|++|+.|++++|+|+.| ..
T Consensus       117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l  194 (401)
T KOG1684|consen  117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL  194 (401)
T ss_pred             HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence            122222221223 5689999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhh----hcc---------------C---C
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT---------------D---K  216 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~----~~~---------------~---~  216 (724)
                      ..++.|||+++++.+|+..||.++.||.+.|..--.++...+...|...+...    ...               +   .
T Consensus       195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs  274 (401)
T KOG1684|consen  195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS  274 (401)
T ss_pred             HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence            99999999999999999999999999987764433333322222221111110    000               0   0


Q ss_pred             CCCcHHHHHHHH----------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004918          217 LGSLSEAREVLK----------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV  285 (724)
Q Consensus       217 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~a  285 (724)
                      ..+..+..+.++          .+....|+...--| ......+.++++....+++.+..|-+.-.....+.|+.|+++|
T Consensus       275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA  354 (401)
T KOG1684|consen  275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA  354 (401)
T ss_pred             cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence            011112222111          11222233444445 3445578899999999999999999999999999999999998


Q ss_pred             HHH--hhhhcCC
Q 004918          286 FFA--QRATSKV  295 (724)
Q Consensus       286 f~~--~r~~~~~  295 (724)
                      -+-  .++|+|.
T Consensus       355 ~LIDKd~~PKW~  366 (401)
T KOG1684|consen  355 VLIDKDQNPKWD  366 (401)
T ss_pred             eeecCCcCCCCC
Confidence            775  2334443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.94  E-value=4e-26  Score=256.09  Aligned_cols=161  Identities=15%  Similarity=0.148  Sum_probs=148.7

Q ss_pred             hCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          412 ACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       412 ~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      .+.+++++++..++.+.+..+....+|++++|+|||+|++.++++||++++.|++++++.+.++++.+||.||+++|.||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G  416 (507)
T PRK08268        337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG  416 (507)
T ss_pred             cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence            34677788777777767777766678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHHH
Q 004918          492 FAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLL  568 (724)
Q Consensus       492 ~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v  568 (724)
                      ||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.++++.| |++++++|+
T Consensus       417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v  496 (507)
T PRK08268        417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA  496 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence            9999999999999999999997 899999999 8999999999999999999999999999999997555 889999999


Q ss_pred             HcCC
Q 004918          569 KSGR  572 (724)
Q Consensus       569 ~~g~  572 (724)
                      ++|.
T Consensus       497 ~~G~  500 (507)
T PRK08268        497 ALGL  500 (507)
T ss_pred             HcCC
Confidence            9864

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.90  E-value=2.6e-24  Score=188.29  Aligned_cols=94  Identities=40%  Similarity=0.689  Sum_probs=87.5

Q ss_pred             chhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHH
Q 004918          491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL  567 (724)
Q Consensus       491 G~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~  567 (724)
                      |||+||++.++++||++++++|+ ++++||.++ .++|+|+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            89999999999999999999995 999999999 7899999999999999999999999999999998855 78999999


Q ss_pred             HHcCCCCcccCccceec
Q 004918          568 LKSGRNGKANGKGLYTY  584 (724)
Q Consensus       568 v~~g~~G~k~g~Gfy~y  584 (724)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.86  E-value=2.2e-21  Score=217.12  Aligned_cols=119  Identities=15%  Similarity=0.191  Sum_probs=113.3

Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP  531 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp  531 (724)
                      +.+||++++.|++++++++.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            578999999999999999999999999999999999999999999999999999999998 899999999 899999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCC
Q 004918          532 FQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGR  572 (724)
Q Consensus       532 ~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~  572 (724)
                      |+|+|.+|+|+++++++++++.+++.+| |++++++|+..|.
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~  499 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS  499 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence            9999999999999999999999996554 8899999999875

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.80  E-value=6.5e-20  Score=160.39  Aligned_cols=89  Identities=34%  Similarity=0.518  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCC-CCCCHH
Q 004918          621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF  699 (724)
Q Consensus       621 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~  699 (724)
                      ++|+||++.+++|||++++++|++ |++|||.+++.|+|||+   |||+++|.+|++++.++++.+.+.+++. +.|+++
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~   76 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL   76 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence            478999999999999999999999 89999999999999998   9999999999999999999999999874 889999


Q ss_pred             HHHHH-------HcCCCCCCC
Q 004918          700 LEERA-------TKGIPLSAP  713 (724)
Q Consensus       700 l~~~~-------k~g~gfy~~  713 (724)
                      +++|+       |+|+|||+|
T Consensus        77 l~~mv~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   77 LKEMVEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHHHHHTT--BGGGTBSSSBE
T ss_pred             HHHHHHCCCCcCcCCCcceeC
Confidence            99999       789999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.78  E-value=3.7e-19  Score=169.43  Aligned_cols=92  Identities=29%  Similarity=0.430  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC--CCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKP  696 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p  696 (724)
                      +|+||+||+|.++++||+++++.|.+ |-+|||.+|.+|.||||   |||+++|.+|+|++.-+|.-|++.+++  .|.|
T Consensus       198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p  273 (298)
T KOG2304|consen  198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP  273 (298)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence            68999999999999999999999999 99999999999999999   999999999999999999999999853  8999


Q ss_pred             CHHHHHHH-------HcCCCCCCCC
Q 004918          697 SRFLEERA-------TKGIPLSAPV  714 (724)
Q Consensus       697 ~~~l~~~~-------k~g~gfy~~~  714 (724)
                      +|+|-+++       |+|+|||+|+
T Consensus       274 sPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  274 SPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             ChHHHHHHhccccccccCccceecC
Confidence            99999999       8899999994

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.75  E-value=4.2e-18  Score=166.06  Aligned_cols=145  Identities=19%  Similarity=0.135  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECccc
Q 004918           30 IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLA  109 (724)
Q Consensus        30 ~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a  109 (724)
                      .-.+.+|.++++.+++|+++|+|||++    ||.|+|+....             ...+.+ ..+.+++|||||++||.|
T Consensus        21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a   82 (177)
T cd07014          21 NVSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNA   82 (177)
T ss_pred             CcCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCch
Confidence            345789999999999999999999986    68898876532             122345 557889999999999999


Q ss_pred             cchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh--------hhccccc--HHHHHHHHHcCCCCCHHHHHHCCC
Q 004918          110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGL  179 (724)
Q Consensus       110 ~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~--------~l~r~~G--~~~a~~l~ltg~~i~a~eA~~~Gl  179 (724)
                      .|+|+.|+++||+++++++++|+++.+..+..+......        .+++..|  ....++++..|..++|++|++.||
T Consensus        83 ~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL  162 (177)
T cd07014          83 ASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL  162 (177)
T ss_pred             hHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence            999999999999999999999999988777443222222        3444445  888999999999999999999999


Q ss_pred             cceecCcchHHHH
Q 004918          180 IDAVVTSEELLKV  192 (724)
Q Consensus       180 v~~vv~~~~l~~~  192 (724)
                      ||++.+.+++.+.
T Consensus       163 VD~v~~~~e~~~~  175 (177)
T cd07014         163 VDSLGSFDDAVAK  175 (177)
T ss_pred             cccCCCHHHHHHH
Confidence            9999998887653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.75  E-value=9.8e-18  Score=171.74  Aligned_cols=189  Identities=19%  Similarity=0.187  Sum_probs=138.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      .||+|||+|.||.+||.+|.++||+|++|||++++.....          ...|            .....+..+++++|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G------------a~~a~s~~eaa~~a   58 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG------------ATVAASPAEAAAEA   58 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC------------CcccCCHHHHHHhC
Confidence            4899999999999999999999999999999999843221          1222            11122333788999


Q ss_pred             CEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCCCCCCe-------ee
Q 004918          389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL-------LE  457 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~~l-------ve  457 (724)
                      |+||.|||++.++...++.  .+.+.+++++++++.++.-|.+  ++++.+..    .|.+|++.|..+..       +.
T Consensus        59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtLt  134 (286)
T COG2084          59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTLT  134 (286)
T ss_pred             CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCceE
Confidence            9999999988888877774  5888889999988644433322  34444332    26778776644432       33


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cc---hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF  525 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG---~i~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  525 (724)
                      |+.|.  +++.+++++++++.+|+.++++++. .|   .++|.++..    .+.||+.+.+. |++++.+..++ .+.
T Consensus       135 imvGG--~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~  210 (286)
T COG2084         135 IMVGG--DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA  210 (286)
T ss_pred             EEeCC--CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence            44433  7999999999999999999999875 22   366777543    33599999977 89999999999 443

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.71  E-value=6.5e-17  Score=158.80  Aligned_cols=150  Identities=25%  Similarity=0.264  Sum_probs=118.0

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004918           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (724)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (724)
                      ++|.++.    .++..+...+.+.++.+++++ ++.|+|. ..+     |+++..                ...++ +.|
T Consensus         2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~-~~l   54 (187)
T cd07020           2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIV-QAI   54 (187)
T ss_pred             EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHH-HHH
Confidence            4566653    367778889999999998665 7877774 332     333321                12344 557


Q ss_pred             hcCCCcEEEEEC---ccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCc--------------chhhhhcccccH-
Q 004918           95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL-  156 (724)
Q Consensus        95 ~~~~kp~Iaav~---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~--------------g~~~~l~r~~G~-  156 (724)
                      ..+||||||+|+   |+|.|+|+.|+++||+++++++++|+.+++..+..+..              +....+++..|. 
T Consensus        55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  134 (187)
T cd07020          55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN  134 (187)
T ss_pred             HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            889999999999   99999999999999999999999999999985544432              234578888887 


Q ss_pred             -HHHHHHHHcCCCCCHHHHHHCCCcceecCcc-hHHHH
Q 004918          157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKV  192 (724)
Q Consensus       157 -~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~-~l~~~  192 (724)
                       .++.+++++|+.++++||+++||||+|++++ ++...
T Consensus       135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence             6899999999999999999999999999886 56543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.70  E-value=3.3e-17  Score=172.77  Aligned_cols=94  Identities=28%  Similarity=0.378  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCH
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  698 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  698 (724)
                      .++++.||++.+++|||++|+++|++ +++|||.++++|+|||+   |||+++|.+|++.+.++++.+++.++++|.|++
T Consensus       183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  258 (288)
T PRK09260        183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP  258 (288)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence            37899999999999999999999998 99999999999999998   999999999999999999999998999999999


Q ss_pred             HHHHHH-------HcCCCCCCCCCC
Q 004918          699 FLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~~~  716 (724)
                      +|.+|+       |+|+|||+|++.
T Consensus       259 ~l~~~~~~g~~G~k~g~Gfy~y~~~  283 (288)
T PRK09260        259 LLEKYVKAGRLGRKTGRGVYDYTNR  283 (288)
T ss_pred             HHHHHHHCCCCccccCCEEEECCCC
Confidence            999999       789999999654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.68  E-value=7.7e-17  Score=168.99  Aligned_cols=91  Identities=24%  Similarity=0.376  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  697 (724)
                      .++++.||++.+++|||++|+++|++ |++|||.+++.|+|||+   |||+++|.+|+|.++++++.+++.+++ +|.|+
T Consensus       188 ~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~  263 (286)
T PRK07819        188 RSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPP  263 (286)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCC
Confidence            47999999999999999999999998 89999999999999998   999999999999999999999998886 88999


Q ss_pred             HHHHHHH-------HcCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAP  713 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~  713 (724)
                      ++|++|+       |+|+|||+|
T Consensus       264 ~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        264 PLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHCCCCcccCCCEeccC
Confidence            9999999       789999998

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.68  E-value=1.1e-16  Score=168.32  Aligned_cols=92  Identities=26%  Similarity=0.435  Sum_probs=87.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCC
Q 004918          618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKP  696 (724)
Q Consensus       618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p  696 (724)
                      -++++|.||++.+++|||++|+++|++ +++|||.++++|+|||+   |||+++|.+|+|.+.++++.+++.+++ +|+|
T Consensus       183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~  258 (282)
T PRK05808        183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRP  258 (282)
T ss_pred             CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence            467999999999999999999999998 89999999999999998   999999999999999999999999885 8899


Q ss_pred             CHHHHHHH-------HcCCCCCCC
Q 004918          697 SRFLEERA-------TKGIPLSAP  713 (724)
Q Consensus       697 ~~~l~~~~-------k~g~gfy~~  713 (724)
                      +++|++|+       |+|+|||+|
T Consensus       259 ~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        259 CPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             CHHHHHHHHCCCCccccCCcccCC
Confidence            99999999       789999998

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.68  E-value=3.5e-16  Score=165.33  Aligned_cols=187  Identities=19%  Similarity=0.235  Sum_probs=134.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||.+||..|+++|++|++||+++++++...           +.|.            ...++..+.+++||
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD   57 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD   57 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence            599999999999999999999999999999998876542           1221            11122226678999


Q ss_pred             EEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCC-------Ceee
Q 004918          390 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------PLLE  457 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~-------~lve  457 (724)
                      +||+|+|++..++..++.  .+.+.++++++|++ +|+.++.   ++.+.+...    ++||+++|..+       ..++
T Consensus        58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~  132 (291)
T TIGR01505        58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS  132 (291)
T ss_pred             EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence            999999987777666553  36667788888874 4444443   344444322    45555433221       2244


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc---hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG  526 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG---~i~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~g  526 (724)
                      ++.+.  ++++++.++++++.+|+.++++++ .+|   +++|+++.+.    ++|++.+.+. |++++++.+++ .+.+
T Consensus       133 i~~gg--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       133 IMVGG--DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEecC--CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            55553  689999999999999999999975 555   4778887654    7899999876 89999999999 4443

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.67  E-value=1.1e-15  Score=161.88  Aligned_cols=188  Identities=17%  Similarity=0.210  Sum_probs=136.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++||+|||+|.||.++|..+++.|++|++||++++..+...           +.|             +..+++. +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence            35899999999999999999999999999999998866532           112             1223344 4568


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCC-------C
Q 004918          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------P  454 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~-------~  454 (724)
                      +||+||+|+|++..++..++  ..+.+.++++++|++ +|+.++.   ++.+.+...    +.||+++|..+       .
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g  132 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG  132 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence            99999999998877766554  346777888998874 4444443   344444322    56666655332       2


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchh---hhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RS  524 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~i---~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~  524 (724)
                      .++++.+.  ++++++.++++++.+|+.++++++ .+|++   +|+++.+    .++|++.+.+. |+++++++.++ .+
T Consensus       133 ~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~  210 (296)
T PRK11559        133 TLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG  210 (296)
T ss_pred             cEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            24455553  689999999999999999999964 56665   6776544    57899999876 89999999998 44


Q ss_pred             cC
Q 004918          525 FG  526 (724)
Q Consensus       525 ~g  526 (724)
                      ++
T Consensus       211 ~~  212 (296)
T PRK11559        211 LA  212 (296)
T ss_pred             cc
Confidence            43

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.67  E-value=1.1e-16  Score=165.59  Aligned_cols=94  Identities=24%  Similarity=0.412  Sum_probs=88.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhC--CCCC
Q 004918          618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFK  695 (724)
Q Consensus       618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~  695 (724)
                      -+++||+||++.++++||++++.+|++ ++++||.+|+.|+|||+   |||+++|.+|+|..+++++.+.+.++  +.|.
T Consensus       183 D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~  258 (307)
T COG1250         183 DVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYR  258 (307)
T ss_pred             CCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc
Confidence            468999999999999999999999999 99999999999999998   99999999999999999999998887  3678


Q ss_pred             CCHHHHHHH-------HcCCCCCCCCC
Q 004918          696 PSRFLEERA-------TKGIPLSAPVS  715 (724)
Q Consensus       696 p~~~l~~~~-------k~g~gfy~~~~  715 (724)
                      |++++++|+       |+|+|||+|++
T Consensus       259 ~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         259 PPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             ccHHHHHHHhcccccccCCCcceeccc
Confidence            899999998       89999999975

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.65  E-value=4.3e-16  Score=164.89  Aligned_cols=94  Identities=24%  Similarity=0.370  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  697 (724)
                      +++++.||++.+++|||++++++|++ +++|||.++++|+|||+   |||+++|.+|++++.++++.+++.+++ +|.|+
T Consensus       185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  260 (295)
T PLN02545        185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC  260 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence            46899999999999999999999998 89999999999999998   999999999999999999999998886 78999


Q ss_pred             HHHHHHH-------HcCCCCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~~~~  716 (724)
                      ++|++|+       |+|+|||+|++.
T Consensus       261 ~~l~~~~~~g~~G~k~g~Gfy~y~~~  286 (295)
T PLN02545        261 PLLVQYVDAGRLGRKSGRGVYHYDGK  286 (295)
T ss_pred             HHHHHHHHCCCCcccCCCeeeECCCC
Confidence            9999999       789999999554

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.63  E-value=6.7e-16  Score=162.65  Aligned_cols=92  Identities=17%  Similarity=0.284  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCC--CC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP  696 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p  696 (724)
                      .++++.||++.+++|||++++++|++ |++|||.++..|+|||+   |||+++|.+|+|.+.++++.+++.+++.+  .|
T Consensus       187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~  262 (287)
T PRK08293        187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA  262 (287)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence            57899999999999999999999999 99999999999999998   99999999999999999999999888743  48


Q ss_pred             CHHHHHHH-------HcCCCCCCCC
Q 004918          697 SRFLEERA-------TKGIPLSAPV  714 (724)
Q Consensus       697 ~~~l~~~~-------k~g~gfy~~~  714 (724)
                      +++|++|+       |+|+|||+|+
T Consensus       263 ~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        263 AALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             hHHHHHHHHCCCCcccCCCccccCc
Confidence            89999999       7899999994

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.62  E-value=1.1e-15  Score=161.45  Aligned_cols=94  Identities=23%  Similarity=0.323  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  697 (724)
                      .++++.||++.+++||++.++++|++ ++++||.++++|+|||+   |||+++|.+|++++.++++.+++.+++ +|+|+
T Consensus       185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~  260 (292)
T PRK07530        185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC  260 (292)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence            36899999999999999999999998 99999999999999997   999999999999999999999998876 79999


Q ss_pred             HHHHHHH-------HcCCCCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~~~~  716 (724)
                      ++|++|+       |+|+|||+|++.
T Consensus       261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        261 PLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999       899999999544

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.62  E-value=6.7e-15  Score=154.35  Aligned_cols=153  Identities=20%  Similarity=0.225  Sum_probs=119.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||+++|..|.++|++|++||++++.++.+.+           .|.++           ..+++.+.+++||
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD   59 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD   59 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence            7999999999999999999999999999999988776432           22211           1233445678999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCC------------CCCeee
Q 004918          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE  457 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~------------~~~lve  457 (724)
                      +||+|+|  .....++++++.+.++++++|+ ++++.....+........+|++.||+.++.            .++...
T Consensus        60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~  136 (279)
T PRK07417         60 LVILALP--IGLLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV  136 (279)
T ss_pred             EEEEcCC--HHHHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence            9999999  5566678899999898888775 455555555554444455799999965442            345566


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      +++++.++++.++.+.++++.+|+.++++.
T Consensus       137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~  166 (279)
T PRK07417        137 LTPTENTDLNALAIVEELAVSLGSKIYTAD  166 (279)
T ss_pred             EccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            888999999999999999999999998875

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.61  E-value=1.2e-15  Score=161.20  Aligned_cols=91  Identities=22%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  697 (724)
                      .++++.||++.+++|||++++++|++ |++|||++++.++|||+   |||+++|.+|+|++.++++.+++.+++ +|.|+
T Consensus       187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  262 (291)
T PRK06035        187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP  262 (291)
T ss_pred             CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence            47899999999999999999999999 99999999999999998   999999999999999999999998886 78999


Q ss_pred             HHHHHHH-------Hc-----CCCCCCC
Q 004918          698 RFLEERA-------TK-----GIPLSAP  713 (724)
Q Consensus       698 ~~l~~~~-------k~-----g~gfy~~  713 (724)
                      ++|++|+       |+     |+|||+|
T Consensus       263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            9999999       78     8999998

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.60  E-value=2.6e-15  Score=159.09  Aligned_cols=96  Identities=23%  Similarity=0.288  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCCH
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR  698 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~  698 (724)
                      +++++||++.++++|++.++++|++ ++++||.++..|+|||++..|||+++|.+|++++++.++.+++.+++ +|.|++
T Consensus       182 ~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~  260 (314)
T PRK08269        182 PGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPA  260 (314)
T ss_pred             CCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCH
Confidence            4789999999999999999999998 99999999999999999999999999999999999999999988887 899999


Q ss_pred             HHHHHH-------HcCCCCCCCCCC
Q 004918          699 FLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~~~  716 (724)
                      +|++|+       |+|+|||+|++.
T Consensus       261 ~l~~~v~~g~~G~ksG~GfY~y~~~  285 (314)
T PRK08269        261 IVVRNMEEGRDGLRTGAGFYDYAGV  285 (314)
T ss_pred             HHHHHHHCCCCcccCCCcceeCCCC
Confidence            999999       889999999553

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.58  E-value=1.4e-14  Score=145.04  Aligned_cols=156  Identities=18%  Similarity=0.193  Sum_probs=114.3

Q ss_pred             cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004918           14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (724)
Q Consensus        14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (724)
                      +|++|.++.|  + .+..+...+.+|.++|+.+..||++++|||+    .||+|+|+..+..             ..+.+
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l   63 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL   63 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence            4677777766  2 2444455789999999999999999999998    7999999977532             12334


Q ss_pred             HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCcc----------CCcchhhhhcccccH----
Q 004918           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI----------PGFGGTQRLPRLVGL----  156 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~----------P~~g~~~~l~r~~G~----  156 (724)
                       +.+..++||+||+++|.|.|+|+.|+++||++++++++.|+.    +|+.          +..|..+.+.+..|.    
T Consensus        64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs----iGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~  138 (211)
T cd07019          64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS----IGIFGVITTVENSLDSIGVHTDGVSTSPLADVS  138 (211)
T ss_pred             -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE----eEEEEEcCCHHHHHHhcCCceEEEEecCcccCC
Confidence             557889999999999999999999999999999999999873    3332          322322222222110    


Q ss_pred             -----------------------------------HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHH
Q 004918          157 -----------------------------------SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  191 (724)
Q Consensus       157 -----------------------------------~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~  191 (724)
                                                         ....+-+..|..+++++|++.||||++-..++..+
T Consensus       139 ~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~  208 (211)
T cd07019         139 ITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA  208 (211)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence                                               11122245688999999999999999987666544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.57  E-value=1.6e-13  Score=149.23  Aligned_cols=171  Identities=19%  Similarity=0.204  Sum_probs=124.3

Q ss_pred             CcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       307 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      .+++|+||| +|.||+++|..|.++|++|++||+++..  .                   .               .+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence            568999998 9999999999999999999999986320  0                   0               0235


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCCCCCCCCeee--EecC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT  461 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve--ii~~  461 (724)
                      ++||+||+|+|  .....++++++.+ ++++++|++++|.  .++..+.....  .+|+|.||+.++....+..  ++..
T Consensus       141 ~~aDlVilavP--~~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~  215 (374)
T PRK11199        141 ADAGMVIVSVP--IHLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC  215 (374)
T ss_pred             hcCCEEEEeCc--HHHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence            68999999999  4456788899988 8999999988875  34556655433  3699999998876654433  4556


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhh--hhHH--HHHHHHHHHcCCCHHHH
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRA--FFPY--SQSARLLVSLGVDVFRI  518 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~nRl--~~~~--~~Ea~~l~~~Gv~~~~I  518 (724)
                      +.+++++++.+.++++.+|..++.+. +.+..++-.+  +-.+  +.++..+.+.+.+.+++
T Consensus       216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~  277 (374)
T PRK11199        216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL  277 (374)
T ss_pred             CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            67788999999999999999999985 3444333222  1112  22455555556665553

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.57  E-value=1e-13  Score=144.58  Aligned_cols=185  Identities=19%  Similarity=0.126  Sum_probs=136.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      +||+|||+|.||.+|+..|.++|+    +|++| |+++++.+.+.           +.|             +...++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence            379999999999999999999998    89999 99988765432           112             2223333 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cC
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT  461 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~  461 (724)
                      +.+++||+||.|++  ++...+++.++.+.+.++++|+|.+++.++..+....... +++..+|..|......+.++ .+
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            55789999999996  6678888888888888889888988999999888766544 78888888887776666644 57


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC-----Cch--hhhhhhhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----pG~--i~nRl~~~~~~Ea~--~l~~~Gv~~~~ID~a~  522 (724)
                      ..++++.++.++++++.+|+ ++++++.     -|.  -...+++.++ +++  ...+.|+++++..+++
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~-~a~~ea~~~~Gl~~~~a~~~~  201 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAI-EALADGGVAAGLPRDVALSLA  201 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence            77899999999999999999 7776430     010  1112222222 222  1445699999988877

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.55  E-value=1.1e-13  Score=138.87  Aligned_cols=186  Identities=19%  Similarity=0.198  Sum_probs=130.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +.++|++||+|.||++|+.+|.++||.|++|||+.++.+...           +.|.            -...+..|.++
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga------------~v~~sPaeVae   90 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGA------------RVANSPAEVAE   90 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhch------------hhhCCHHHHHh
Confidence            468999999999999999999999999999999999877643           2231            11233347789


Q ss_pred             CCCEEEEcccCChHHHHHHHHH--HHhhCCCCcEEEecCCCCCH---HHHhcccCCCCCEEEEecCCCC--------CCC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPA--------HVM  453 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~---~~~~~~~~~~~r~ig~h~~~p~--------~~~  453 (724)
                      +||+||.+||+..+++..++..  +.+.++++.......|++.+   .++++.....    +..|.+.|        ..+
T Consensus        91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G  166 (327)
T KOG0409|consen   91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG  166 (327)
T ss_pred             hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence            9999999999888888877764  33334444433223333333   3666655432    23333333        222


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cc---hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG---~i~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      . +.+..+  .+++.++++.++++.+||+.+.++.+ -|   -+.|.++.+.    +.|++.+.+. |+++..+-.++
T Consensus       167 ~-Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eil  241 (327)
T KOG0409|consen  167 T-LTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEIL  241 (327)
T ss_pred             e-EEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            2 334444  48999999999999999999999653 23   4667775433    2499988866 99999988888

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.55  E-value=1.2e-14  Score=155.22  Aligned_cols=97  Identities=22%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHH
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF  699 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~  699 (724)
                      ++++.||++.++++||+.++++|++ +++++|.++..|+|||++..|||+++|.+|++++.+++..+++.++++|.|+++
T Consensus       183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~  261 (311)
T PRK06130        183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL  261 (311)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence            5789999999999999999999999 899999999999999999999999999999999999999999989889999999


Q ss_pred             HHHHH-------HcCCCCCCCCCCC
Q 004918          700 LEERA-------TKGIPLSAPVSSS  717 (724)
Q Consensus       700 l~~~~-------k~g~gfy~~~~~~  717 (724)
                      |++|+       |+|+|||+|++..
T Consensus       262 l~~~~~~g~~G~~~g~gfy~y~~~~  286 (311)
T PRK06130        262 LEEKVEAGELGAKSGQGFYAWPPER  286 (311)
T ss_pred             HHHHHHcCCccccCCCcCccCCCCC
Confidence            99999       8999999996554

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.53  E-value=4.5e-14  Score=149.22  Aligned_cols=186  Identities=15%  Similarity=0.131  Sum_probs=124.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |+||+|||+|.||.+||..|+++|++|++||+++++++...+           .|             +..+++. +.++
T Consensus         1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~   56 (296)
T PRK15461          1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAA   56 (296)
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            358999999999999999999999999999999998765421           12             1122333 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCC---CCCCeee
Q 004918          387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (724)
                      +||+||.|+|++..++..++.  .+.+.++++++++. +|+.++.   ++...+. +..+|+.......+   ..+.++-
T Consensus        57 ~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~  135 (296)
T PRK15461         57 GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLL  135 (296)
T ss_pred             cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEE
Confidence            999999999977666544442  35666778887754 4554443   3333332 22233322111111   1222333


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      ++.|   +++++++++++++.+|+.++++++ +|     .++|.++    ...+.|++.+.+. |++++.+-.++
T Consensus       136 ~~gg---~~~~~~~~~p~l~~~g~~~~~~g~-~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l  206 (296)
T PRK15461        136 LAGG---TAEQVERATPILMAMGNELINAGG-PGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM  206 (296)
T ss_pred             EECC---CHHHHHHHHHHHHHHcCCeEeeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3333   789999999999999999999886 33     2344432    3445699988866 89999977777

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.53  E-value=1.8e-14  Score=168.98  Aligned_cols=92  Identities=24%  Similarity=0.280  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCH
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  698 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  698 (724)
                      ++++|.||++.+++|||++++++|+  +++|||.+++ ++|||+   |||+++|.+|+|.++++++.+++.++++|.|++
T Consensus       491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~  564 (708)
T PRK11154        491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA  564 (708)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence            5799999999999999999999997  6999999998 899998   999999999999999999999998988999999


Q ss_pred             HHHHHH-------HcCCCCCCCCCC
Q 004918          699 FLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~~~  716 (724)
                      ++++|+       |+|+|||+|++.
T Consensus       565 ~l~~~v~~g~~G~k~g~GfY~y~~~  589 (708)
T PRK11154        565 AFDKLLNDDRKGRKNGRGFYLYGQK  589 (708)
T ss_pred             HHHHHHHCCCCcccCCceEEECCCC
Confidence            999999       889999999643

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.52  E-value=2.3e-14  Score=167.52  Aligned_cols=92  Identities=25%  Similarity=0.289  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCH
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  698 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  698 (724)
                      ++++|.||++.+++|||++++++|+  +++|||.++. ++|||+   |||+++|.+|+|+++++++.+++.++++|.|++
T Consensus       486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~  559 (699)
T TIGR02440       486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA  559 (699)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence            5799999999999999999999995  7999999997 999999   999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCCCCCCCCC
Q 004918          699 FLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~~~  716 (724)
                      +|++|+       |+|+|||+|++.
T Consensus       560 ~l~~~v~~G~lG~ksg~GfY~y~~~  584 (699)
T TIGR02440       560 VFDKLLSDDRKGRKNGKGFYLYGAA  584 (699)
T ss_pred             HHHHHHHCCCCcccCCcEEEeCCCC
Confidence            999999       889999999643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.50  E-value=2.8e-14  Score=137.24  Aligned_cols=148  Identities=18%  Similarity=0.142  Sum_probs=100.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |+||+|||+|.||.+||.+|+++||+|++|||++++.++..+           .             .....++. +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence            579999999999999999999999999999999998777532           1             23444555 6678


Q ss_pred             CCCEEEEcccCChHHHHHHHHH--HHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCC--------CC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAH--------VM  453 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~--------~~  453 (724)
                      +||+||.|+|++.+ .++++..  +.+.+.++.+|+. +|+.+++   ++++.+...    |.||.+.|-        .+
T Consensus        57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g  130 (163)
T PF03446_consen   57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG  130 (163)
T ss_dssp             HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred             cccceEeecccchh-hhhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence            99999999996555 4566666  8888899998874 4444443   344443222    355554332        23


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEE-EcC
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV-VGN  488 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~-v~d  488 (724)
                      .+.-++.|   +++++++++++++.+|+++++ +++
T Consensus       131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~  163 (163)
T PF03446_consen  131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP  163 (163)
T ss_dssp             TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred             ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence            44555565   589999999999999998884 354

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.50  E-value=9.6e-13  Score=137.39  Aligned_cols=188  Identities=18%  Similarity=0.182  Sum_probs=136.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      |+||+|||+|.||.+++..+.++|   ++|++||++++..+...+.+          |             +..+++. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence            468999999999999999999999   78999999998766543210          1             1122333 4


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeee-EecCC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE  462 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~  462 (724)
                      .+.+||+||.|+|  ....+++++++.+.+  +++|+|.+++++...+...++...+++.+||..|......+. ++++.
T Consensus        59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence            5688999999998  777888888888776  467778888999988887776566899999988877666665 45677


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC-CC-chh-hh----hhhhHHHHHHHHH-HHcCCCHHHHHHHH
Q 004918          463 RTSAQVILDLMTVGKIIKKVPVVVGN-CT-GFA-VN----RAFFPYSQSARLL-VSLGVDVFRIDSAI  522 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d-~p-G~i-~n----Rl~~~~~~Ea~~l-~~~Gv~~~~ID~a~  522 (724)
                      .++++..+.++.+++.+|..+++..+ .. ... ..    -+++.++...... .+.|+++++...++
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~  202 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA  202 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            78999999999999999975544322 11 111 11    1222333333333 34689888877666

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.48  E-value=1.4e-12  Score=135.63  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=126.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      +||+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+.          .|             +..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence            379999999999999999999885    699999999886654221          11             1223333 4


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE  462 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~  462 (724)
                      .+.+||+||.||+  ++...++++++.+.++++++|+|...++++..+...+....+++...|+.|...+..+..+ +++
T Consensus        60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence            5789999999999  6888899999998888899999999999999999988766689999999999888887766 567


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          463 RTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      ..+++..+.+..++..+|+.. ++.
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~-~~~  161 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTE-VVN  161 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEE-EEc
Confidence            778999999999999999974 443

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.47  E-value=7.9e-13  Score=143.49  Aligned_cols=221  Identities=16%  Similarity=0.095  Sum_probs=143.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||++||..|.++|++|.+|+++++..+....         ...+..+           ..++++ +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998876443211         1112111           112333 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHh-hCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCC------------CC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HV  452 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~------------~~  452 (724)
                      ||+||+|+|  ++...++++++.+ .++++++|++.+|..  .+..+........+|++.||+...            ..
T Consensus        61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            999999999  5677899999987 478888886655543  233444444556789999986433            12


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhh--hHHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 004918          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAF--FPYSQSARLLVSLGVDVFRIDSAIRSFGLP-  528 (724)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~--~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~-  528 (724)
                      +...-+++++.++++.++.++++++.+|..++++ .+.+..++..+.  -.++.+++ ....+.+..+.-.. .+-||. 
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~l-a~~gfrd  216 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALRL-AAGGFRD  216 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHhh-hcccccC
Confidence            3335578888899999999999999999999988 455666666552  34555544 22223222222222 222332 


Q ss_pred             ------ccHHHHHHhhchH--HHHHHHHHHHHh
Q 004918          529 ------IGPFQLLDLAGYG--VAAATSKEFDKA  553 (724)
Q Consensus       529 ------~Gp~~~~D~~Gld--~~~~~~~~l~~~  553 (724)
                            .-|-.|.|.+--.  .+...++.+...
T Consensus       217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~  249 (359)
T PRK06545        217 ITRIASSDPGMWRDILESNAEALLDALDEWIED  249 (359)
T ss_pred             CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                  2677777776432  233444444433

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.47  E-value=1.1e-12  Score=137.69  Aligned_cols=188  Identities=14%  Similarity=0.128  Sum_probs=133.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      .+||+|||+|.||.+|+..|.++|    ++|+++||+++ .++....          +.|             +..+.+.
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~   59 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK   59 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence            458999999999999999999998    78999999764 4343211          001             2223333


Q ss_pred             -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE-ec
Q 004918          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VR  460 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-i~  460 (724)
                       +.+++||+||.||+  ++...+++.++.+.+.++++|+|..++++++.+.........+++.||..|.....-+.+ ++
T Consensus        60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~  137 (279)
T PRK07679         60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP  137 (279)
T ss_pred             HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence             45689999999999  777778888888888888899988899999888887765557999999766555444444 46


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhh--hhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV--NRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~p-----G~i~--nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  522 (724)
                      ++..+++..+.+++++..+|+..+ +.+.-     |...  ..+ ..++.|++.  ..+.|+++++..+++
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~  206 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI  206 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            777889999999999999998554 32210     1000  112 233334433  345689998888877

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.46  E-value=4.8e-13  Score=141.08  Aligned_cols=181  Identities=19%  Similarity=0.158  Sum_probs=126.2

Q ss_pred             EEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCCCEE
Q 004918          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV  391 (724)
Q Consensus       313 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV  391 (724)
                      |||+|.||.+||..|+++|++|++||+++++++...+           .|             +..+++. +.+++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG-------------AQAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcCCEE
Confidence            6899999999999999999999999999988765421           12             1223333 567899999


Q ss_pred             EEcccCChHHHHHHH---HHHHhhCCCCcEEEecCCCCCHHH---HhcccCCCCCEEEEecCCCCCC--------CCeee
Q 004918          392 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFFSPAHV--------MPLLE  457 (724)
Q Consensus       392 Ieav~e~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~~~~~r~ig~h~~~p~~~--------~~lve  457 (724)
                      |.|||.+.++ ++++   ..+.+.+++++++++. |++.+..   +.+.+..    .|.+|.+.|..        +.+..
T Consensus        57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~  130 (288)
T TIGR01692        57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF  130 (288)
T ss_pred             EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence            9999965554 4455   5677778888887654 4555543   3333321    14555543322        23333


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCch---hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG  526 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~---i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~g  526 (724)
                      ++.|   +++.+++++++++.+|+.++++++ ..|.   ++|.++.    ..+.|++.+.+. |++++++..++ .+.|
T Consensus       131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            4444   578999999999999999999986 3343   4455543    245799998876 89999999998 5444

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.46  E-value=1.3e-13  Score=161.69  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCC--CC
Q 004918          618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FK  695 (724)
Q Consensus       618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~  695 (724)
                      -+++||.||++.+++|||+.++++| + +++|||.++..++|||+   |||+++|.+|+|+++++++.++..++++  +.
T Consensus       493 d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~  567 (715)
T PRK11730        493 DCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKD  567 (715)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccc
Confidence            3689999999999999999999999 7 89999999999999998   9999999999999999999999888764  34


Q ss_pred             CCHHHHHHH-------HcCCCCCCCCC
Q 004918          696 PSRFLEERA-------TKGIPLSAPVS  715 (724)
Q Consensus       696 p~~~l~~~~-------k~g~gfy~~~~  715 (724)
                      |++++++|+       |+|+|||+|++
T Consensus       568 ~~~~l~~~v~~G~~G~k~g~GfY~y~~  594 (715)
T PRK11730        568 YRDAIDVLFEAKRFGQKNGKGFYRYEE  594 (715)
T ss_pred             hhHHHHHHHHCCCCccccCCEeEeccc
Confidence            678999999       88999999953

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.45  E-value=5.2e-12  Score=132.30  Aligned_cols=151  Identities=19%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ||+|||+|.||+++|..|.++|+  +|++||++++.++.+.           +.|.            +....+.+.+.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGL------------VDEIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCC------------CcccCCHHHHhc
Confidence            79999999999999999999996  7899999998766542           1221            111223333456


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccC--CCCCEEEEecCCC------CC------CC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP------AH------VM  453 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~--~~~r~ig~h~~~p------~~------~~  453 (724)
                      ||+||.|+|  .+...+++.++.+ ++++++|++.+|+. . .+...+.  .+.+|++.||+.+      ..      .+
T Consensus        59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~k-~-~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGSTK-A-KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccch-H-HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            999999999  6667788888888 88899888654432 2 2222221  2357999999742      21      34


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      ..+.+++.+.++++.++.+.++++.+|..++.+.+
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            55667788888999999999999999999999853

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.45  E-value=7.6e-13  Score=146.95  Aligned_cols=189  Identities=13%  Similarity=0.152  Sum_probs=126.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c--
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~--  383 (724)
                      .+.+|+|||+|.||.+||.+|+++|++|++|||++++.+...+...       ..|.          ..+....+. +  
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHH
Confidence            3568999999999999999999999999999999998876543100       0021          011122333 2  


Q ss_pred             -CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCC--------CC
Q 004918          384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPA--------HV  452 (724)
Q Consensus       384 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~--------~~  452 (724)
                       .++.+|+||.|||.+..+. +++..+.+.+.++.||+..++..+.+  .+.+.+...    |+||+..|        ..
T Consensus        68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~----Gi~fldapVSGG~~gA~~  142 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEK----GLLYLGMGVSGGEEGARN  142 (493)
T ss_pred             hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEeCCCcCCHHHhcC
Confidence             3445999999999776654 55578888888888887544443322  333333211    55654433        23


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCc--h---hh-hhhhh---HHHHHHHHHHHc--CCCH
Q 004918          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG--F---AV-NRAFF---PYSQSARLLVSL--GVDV  515 (724)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d~pG--~---i~-nRl~~---~~~~Ea~~l~~~--Gv~~  515 (724)
                      ++  -+++|.  +++++++++++++.++.+      ++++++ +|  .   ++ |-+..   ..+.|++.+++.  |+++
T Consensus       143 G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~  217 (493)
T PLN02350        143 GP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN  217 (493)
T ss_pred             CC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence            33  345543  799999999999999954      778886 34  2   33 43433   334599999865  8999


Q ss_pred             HHHHHHH
Q 004918          516 FRIDSAI  522 (724)
Q Consensus       516 ~~ID~a~  522 (724)
                      +++-.++
T Consensus       218 ~~l~~vf  224 (493)
T PLN02350        218 EELAEVF  224 (493)
T ss_pred             HHHHHHH
Confidence            9998885

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.45  E-value=1.6e-12  Score=144.27  Aligned_cols=193  Identities=13%  Similarity=0.107  Sum_probs=130.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC--
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE--  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~--  384 (724)
                      |.+|+|||+|.||++||.+|+++||+|++|||++++.+...+...       ..|.           .+..++++ +.  
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~   62 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN   62 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence            358999999999999999999999999999999999877543211       0111           12233444 22  


Q ss_pred             -cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCe------ee
Q 004918          385 -FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------LE  457 (724)
Q Consensus       385 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l------ve  457 (724)
                       ++++|+||.+|+.. +...++++++.+.+.++.||++.+++.+.+.........++  |+||...|..+..      --
T Consensus        63 ~l~~~d~Iil~v~~~-~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~--Gi~fldapVSGG~~gA~~G~~  139 (470)
T PTZ00142         63 SLKKPRKVILLIKAG-EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK--GILYLGMGVSGGEEGARYGPS  139 (470)
T ss_pred             cCCCCCEEEEEeCCh-HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--CCeEEcCCCCCCHHHHhcCCE
Confidence             34689999998844 45567778899999999999876666554433222111112  6677654422211      12


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-Cch---hh-hhhhhH---HHHHHHHHHH--cCCCHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TGF---AV-NRAFFP---YSQSARLLVS--LGVDVFRIDSA  521 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d~-pG~---i~-nRl~~~---~~~Ea~~l~~--~Gv~~~~ID~a  521 (724)
                      ++.|.  ++++++.++++++.++.+      ..++++. .|.   ++ |-+.+.   .+.|++.+++  .|++++++-.+
T Consensus       140 lm~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v  217 (470)
T PTZ00142        140 LMPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEV  217 (470)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence            45544  699999999999999987      5777752 232   22 444443   3459999986  48899999888


Q ss_pred             HH
Q 004918          522 IR  523 (724)
Q Consensus       522 ~~  523 (724)
                      +.
T Consensus       218 ~~  219 (470)
T PTZ00142        218 FN  219 (470)
T ss_pred             HH
Confidence            74

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.44  E-value=2e-13  Score=159.79  Aligned_cols=92  Identities=15%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCC--C
Q 004918          618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--K  695 (724)
Q Consensus       618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~  695 (724)
                      -.++||.||++.++++||++++++| + ++++||.++..++|||+   |||+++|.+|+|+.+++++.+.+.+++++  .
T Consensus       493 d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~  567 (714)
T TIGR02437       493 DCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKD  567 (714)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccc
Confidence            3589999999999999999999999 6 89999999999999998   99999999999999999999998887654  3


Q ss_pred             CCHHHHHHH-------HcCCCCCCCC
Q 004918          696 PSRFLEERA-------TKGIPLSAPV  714 (724)
Q Consensus       696 p~~~l~~~~-------k~g~gfy~~~  714 (724)
                      |++++.+|+       |+|+|||+|+
T Consensus       568 ~~~~l~~~v~~G~lG~K~g~GfY~y~  593 (714)
T TIGR02437       568 GRDAIDALFEAKRLGQKNGKGFYAYE  593 (714)
T ss_pred             hhHHHHHHHHCCCCcccCCCEEEecc
Confidence            578999999       8899999995

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.42  E-value=2.8e-12  Score=132.64  Aligned_cols=163  Identities=17%  Similarity=0.192  Sum_probs=121.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC--cc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~  383 (724)
                      +++|+|+|+|.||+++|..+.+.|+.|.+++++...  ++.+           .+.|..++           .+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence            478999999999999999999999998777665543  3332           12232211           1122  35


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCC------CCCCe
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPA------HVMPL  455 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~------~~~~l  455 (724)
                      .+.++|+||.|||  .....++++++.+.++++++|+..+|+..  +..+........+|+|.||...+      ..+..
T Consensus        61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            6788999999999  88999999999999999999987777643  44444444332289999997766      23345


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV  494 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~  494 (724)
                      +.+++++.++.+.++.++.+++.+|..++.+. +.+-.+.
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~  178 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVM  178 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHH
Confidence            66788888899999999999999999999884 4444444

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.42  E-value=4.6e-12  Score=140.53  Aligned_cols=160  Identities=18%  Similarity=0.151  Sum_probs=121.7

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       310 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ||+||| +|.||.++|..|.++|++|++||++++...+...          +.|             +..+++. +.+.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~~   58 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAKD   58 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhcc
Confidence            799997 7999999999999999999999999877543211          111             1223343 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCC----CCCCCCeeeEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS----PAHVMPLLEIVRT  461 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~----p~~~~~lveii~~  461 (724)
                      ||+||.|+|  .+...+++.++.+.++++++|++.+|+  .+...+....+...+|++.||+.    |...+..+.++++
T Consensus        59 aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~  136 (437)
T PRK08655         59 ADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPT  136 (437)
T ss_pred             CCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecC
Confidence            999999999  566678899999999999999877764  44455555555456899999764    3345566778888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV  494 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~  494 (724)
                      +.++++.++.+.+++..+|..++++. +.+..++
T Consensus       137 ~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~  170 (437)
T PRK08655        137 EKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIM  170 (437)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence            88899999999999999999998874 3444333

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.41  E-value=9.8e-13  Score=150.19  Aligned_cols=167  Identities=22%  Similarity=0.268  Sum_probs=131.4

Q ss_pred             cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC---CCCccCCCCchhhhhccCCCcccccchh
Q 004918           12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (724)
Q Consensus        12 ~~~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (724)
                      +++|++|+++.+  + .|..+....+.+.+.++.+..|++||+|||+-.   |..||+    .++               
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~i---------------  367 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EII---------------  367 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HHH---------------
Confidence            678999999887  2 354444456788899999999999999999743   233443    111               


Q ss_pred             HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCcee------eCcc------cccCccCCcchhhhhcc-
Q 004918           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR-  152 (724)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f------~~pe------~~~G~~P~~g~~~~l~r-  152 (724)
                       .+.+ ..+...+|||||.++|.|.+||..++++||.++|++.+.+      +.+.      .++|+.|....+..+.. 
T Consensus       368 -~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~  445 (584)
T TIGR00705       368 -RREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV  445 (584)
T ss_pred             -HHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence             1233 3466788999999999999999999999999999999877      5553      58999998877776664 


Q ss_pred             ---------------------------cccHHH-----HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHH
Q 004918          153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (724)
Q Consensus       153 ---------------------------~~G~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (724)
                                                 .++..+     +.+.+.+|+.+++++|+++||||++-   .+ +.|.+.|.++
T Consensus       446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l  521 (584)
T TIGR00705       446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL  521 (584)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence                                       566666     78889999999999999999999994   34 6777888888


Q ss_pred             Hcc
Q 004918          201 AAR  203 (724)
Q Consensus       201 a~~  203 (724)
                      +..
T Consensus       522 a~~  524 (584)
T TIGR00705       522 AHC  524 (584)
T ss_pred             cCC
Confidence            887

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.41  E-value=5.9e-12  Score=133.30  Aligned_cols=186  Identities=9%  Similarity=0.029  Sum_probs=122.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (724)
                      ||+|||+|.||.+||..|+++|++|++|||++++++...+           .+...          .....+. +.+.++
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~----------~~s~~~~~~~~~~~   60 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTG----------VANLRELSQRLSAP   60 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcc----------cCCHHHHHhhcCCC
Confidence            7999999999999999999999999999999998776432           12110          0000111 345679


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeeeEecCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTE  462 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveii~~~  462 (724)
                      |+||.|+|.+  ..++++.++.+.++++.+|++.+++.+.+  ++...+. ...+|+..+....+   ..+ + -++.+.
T Consensus        61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~-~~~~gG  136 (298)
T TIGR00872        61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-Y-CFMIGG  136 (298)
T ss_pred             CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-C-eeeeCC
Confidence            9999999954  66788889999998888887655554333  3323332 22233333322111   112 2 223332


Q ss_pred             CCCHHHHHHHHHHHHHcCC---eeEEEcCCC-ch----hhhhhhhHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004918          463 RTSAQVILDLMTVGKIIKK---VPVVVGNCT-GF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI  522 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~p-G~----i~nRl~~~~---~~Ea~~l~~~-G--v~~~~ID~a~  522 (724)
                        ++++++.++++++.++.   ..+++++.. |.    +.|-+....   +.|++.+++. |  ++++++-.+|
T Consensus       137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~  208 (298)
T TIGR00872       137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW  208 (298)
T ss_pred             --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence              68999999999999996   467777631 21    224343333   3499999977 4  5999999887

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.41  E-value=1.4e-12  Score=125.31  Aligned_cols=135  Identities=25%  Similarity=0.272  Sum_probs=105.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECc
Q 004918           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G  107 (724)
                      +++.++++|.+.|+.++.|+.+++|+|..    .|.|+|+...                ..+. +.|..++||||+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence            66688999999999999999999999975    4677765432                2334 5577889999999999


Q ss_pred             cccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchh-------------hhh------cccccHHHHHHHHHcCCC
Q 004918          108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRL------PRLVGLSKAIEMMLLSKS  168 (724)
Q Consensus       108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~-------------~~l------~r~~G~~~a~~l~ltg~~  168 (724)
                      .|.++|+.|+++||.|++.+++.|++..+..+.....+-.             ..+      .|.+......+++..|..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~  146 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV  146 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence            9999999999999999999999999988876653321000             011      122344456788889999


Q ss_pred             CCHHHHHHCCCccee
Q 004918          169 ITSEEGWKLGLIDAV  183 (724)
Q Consensus       169 i~a~eA~~~Glv~~v  183 (724)
                      ++++||++.||||++
T Consensus       147 ~~a~eA~~~GLvD~i  161 (161)
T cd00394         147 LTAQEALEYGLVDAL  161 (161)
T ss_pred             EcHHHHHHcCCcCcC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.41  E-value=3.6e-12  Score=134.17  Aligned_cols=183  Identities=17%  Similarity=0.168  Sum_probs=121.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||.+||.+|.++|++|++||+++. .++.           .+.|.            ....+..+.+++||
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~------------~~~~s~~~~~~~ad   57 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA------------VSVETARQVTEASD   57 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC------------eecCCHHHHHhcCC
Confidence            799999999999999999999999999999874 2221           11221            11122225578999


Q ss_pred             EEEEcccCChHHHHHHHHH--HHhhCCCCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCC----CCCCeeeEe
Q 004918          390 MVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEIV  459 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~----~~~~lveii  459 (724)
                      +||.|||++.++...++..  +.+.+.++.+++. +|+.++.   +++..+. +..+|+. +|+...    ..+.+.-++
T Consensus        58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~  135 (292)
T PRK15059         58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV  135 (292)
T ss_pred             EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence            9999999876666555432  5555677887764 4444444   3333332 2334554 233211    222333333


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      .|   +++++++++++++.+|+.++++++. |     .++|.++.    ..+.|++.+.+. |++++++-.++
T Consensus       136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l  204 (292)
T PRK15059        136 GG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL  204 (292)
T ss_pred             cC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            33   6899999999999999999999873 4     24455433    234699988866 89999877777

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.39  E-value=3.7e-12  Score=134.98  Aligned_cols=181  Identities=18%  Similarity=0.116  Sum_probs=120.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC--
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  386 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~--  386 (724)
                      ||+|||+|.||.++|..|+++|++|++||+++++.+...           +.|             .....+. +.++  
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence            799999999999999999999999999999998766532           112             1122333 2233  


Q ss_pred             -CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCCCCCEEEEecCCCCCCCCe-------e
Q 004918          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVMPL-------L  456 (724)
Q Consensus       387 -~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~p~~~~~l-------v  456 (724)
                       ++|+||.|+|.+.. .++++..+.+.++++.+|+..+++.+.  .++...+...    |.+|.+.|..+..       .
T Consensus        58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~~  132 (299)
T PRK12490         58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGYC  132 (299)
T ss_pred             CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCCe
Confidence             37999999996544 456667888878888887754333332  2343433221    3455543322221       2


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCc-----hhhhhh-hh---HHHHHHHHHHHc-C--CCHHHHHHH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRA-FF---PYSQSARLLVSL-G--VDVFRIDSA  521 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~pG-----~i~nRl-~~---~~~~Ea~~l~~~-G--v~~~~ID~a  521 (724)
                      -++.|   +++++++++++++.+|.   ..+++++ +|     .++|++ ..   ..+.|++.+.++ |  ++++++-.+
T Consensus       133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~  208 (299)
T PRK12490        133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL  208 (299)
T ss_pred             EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence            22333   68999999999999997   6788876 44     233443 32   233599999986 7  888888888


Q ss_pred             HH
Q 004918          522 IR  523 (724)
Q Consensus       522 ~~  523 (724)
                      +.
T Consensus       209 ~~  210 (299)
T PRK12490        209 WR  210 (299)
T ss_pred             Hc
Confidence            74

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.39  E-value=2.4e-12  Score=129.38  Aligned_cols=156  Identities=25%  Similarity=0.289  Sum_probs=105.5

Q ss_pred             EEEEEeC-----CCC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHH
Q 004918           15 VAIITLI-----NPP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (724)
Q Consensus        15 v~~i~l~-----~p~-~Na-l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (724)
                      |++|.++     +|. .|+ ++..++.+|.++|+.++.|+++++|||+.    +|.|+++....             ...
T Consensus         2 v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~-------------~l~   64 (214)
T cd07022           2 VAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF-------------ELA   64 (214)
T ss_pred             EEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH-------------HHH
Confidence            4555553     332 354 45789999999999999999999999974    56676654321             111


Q ss_pred             HHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCCc---------ch
Q 004918           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------GG  146 (724)
Q Consensus        88 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~~---------g~  146 (724)
                      +.+ ..+.. +|||||+++|.|.|+|+.|+++||++++++++.|+...+.            +|+-+..         +.
T Consensus        65 ~~l-~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~  142 (214)
T cd07022          65 DAI-RAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGN  142 (214)
T ss_pred             HHH-HHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCC
Confidence            222 22333 5999999999999999999999999999999998654333            2321110         00


Q ss_pred             -----h----hhh-----------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHH
Q 004918          147 -----T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  191 (724)
Q Consensus       147 -----~----~~l-----------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~  191 (724)
                           +    ..+                 .|-+......+++  |..+++++|++.||||++...+++..
T Consensus       143 ~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~  211 (214)
T cd07022         143 PDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA  211 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence                 0    000                 1122333344444  99999999999999999987666543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.39  E-value=4.1e-12  Score=134.77  Aligned_cols=182  Identities=16%  Similarity=0.138  Sum_probs=122.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc---
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF---  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~---  385 (724)
                      ||+|||+|.||.+||..|+++|++|++||+++++.+...+           .|             ....++. +.+   
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~~   57 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG-------------ATGADSLEELVAKL   57 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHhhc
Confidence            7999999999999999999999999999999988766421           12             1122233 222   


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCCCCCCe------ee
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL------LE  457 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~~l------ve  457 (724)
                      .++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+.+  .+...+...    |.+|.+.|..+..      .-
T Consensus        58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~  132 (301)
T PRK09599         58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC  132 (301)
T ss_pred             CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence            247999999996544 3556677888888888887554444322  333333221    4555543322211      12


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCCch-----hhhh-hhhHH---HHHHHHHHH---cCCCHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTGF-----AVNR-AFFPY---SQSARLLVS---LGVDVFRIDSA  521 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~pG~-----i~nR-l~~~~---~~Ea~~l~~---~Gv~~~~ID~a  521 (724)
                      ++.+  -+++++++++++++.+++    .++++++ +|.     ++|+ +....   +.|++.+.+   .|++++++-.+
T Consensus       133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~  209 (301)
T PRK09599        133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP-VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV  209 (301)
T ss_pred             EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3333  278999999999999999    7888887 342     2333 33332   358999886   47899999988


Q ss_pred             HH
Q 004918          522 IR  523 (724)
Q Consensus       522 ~~  523 (724)
                      +.
T Consensus       210 ~~  211 (301)
T PRK09599        210 WR  211 (301)
T ss_pred             Hh
Confidence            84

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.38  E-value=1.9e-11  Score=134.89  Aligned_cols=196  Identities=14%  Similarity=0.139  Sum_probs=127.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      .++||+|||+|.||.++|.+|+++||+|++||+++++++.....        +...+.+.++            .+++.+
T Consensus         2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~   69 (415)
T PRK11064          2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA   69 (415)
T ss_pred             CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence            36799999999999999999999999999999999988764211        0111111111            134444


Q ss_pred             ccCccCcCCCCEEEEcccCC--------hHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCC-------C---
Q 004918          379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-------Q---  438 (724)
Q Consensus       379 ~~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-------~---  438 (724)
                      +++   +++||+||.|||.+        ......+.+.+.++++++++|+..|+..+  ...+...+..       |   
T Consensus        70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~  146 (415)
T PRK11064         70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQA  146 (415)
T ss_pred             ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence            443   45899999999964        35666777889999999988764333222  1223221110       0   


Q ss_pred             ---CCEEEEecCCCC--CCCCee-------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhh---
Q 004918          439 ---DRIIGAHFFSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA---  497 (724)
Q Consensus       439 ---~r~ig~h~~~p~--~~~~lv-------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl---  497 (724)
                         ..|.-.  ++|-  .-+..+       -++.|  .+++..++++++++.+++.++++++ ++      ++.|-+   
T Consensus       147 g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~-~~~Ae~~Kl~~N~~~a~  221 (415)
T PRK11064        147 GEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTN-SRTAEMCKLTENSFRDV  221 (415)
T ss_pred             cCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCC-HHHHHHHHHHHHHHHHH
Confidence               011111  2331  111111       34544  3789999999999999988777764 33      233433   


Q ss_pred             hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          498 FFPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       498 ~~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      ..+++||+..+.+. |+++.++-+++
T Consensus       222 ~ia~~nE~~~lae~~GiD~~~v~~~~  247 (415)
T PRK11064        222 NIAFANELSLICADQGINVWELIRLA  247 (415)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            24788999988877 99999988777

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.38  E-value=6.9e-12  Score=133.57  Aligned_cols=161  Identities=17%  Similarity=0.127  Sum_probs=116.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      .++||+|||+|.||.++|..|.+.|+  +|++||++++.++.+.+           .|..           ....++. +
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~~   62 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAAE   62 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHHH
Confidence            45799999999999999999999995  89999999987665421           1211           0112233 4


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCCCC---------
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV---------  452 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~---------  452 (724)
                      .+++||+||+|+|  .....+++.++.+.++++++|++.+|..  .+..+........+|++.||+.+...         
T Consensus        63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~  140 (307)
T PRK07502         63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE  140 (307)
T ss_pred             HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence            5789999999999  5566788888888888998876544432  12233333344458999999865432         


Q ss_pred             ---CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCc
Q 004918          453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTG  491 (724)
Q Consensus       453 ---~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG  491 (724)
                         +..+.+++...++++.++.+.++++.+|..++++. +.+.
T Consensus       141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD  183 (307)
T PRK07502        141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHD  183 (307)
T ss_pred             HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHh
Confidence               22345677777889999999999999999998874 3344

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.38  E-value=1.3e-12  Score=153.20  Aligned_cols=103  Identities=20%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             HHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHH
Q 004918          470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVA  543 (724)
Q Consensus       470 ~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~g~~~---Gp~~~~D~~Gld~~  543 (724)
                      ..+..++..+++.++.+.+.||||+||++.+++||+++++++|+  +++|||.++ .++|||+   |||+++|.+|+|.+
T Consensus       625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v  704 (737)
T TIGR02441       625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL  704 (737)
T ss_pred             HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence            34556677788888766789999999999999999999999997  999999999 8999996   99999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcHHHHHHHHc-CC
Q 004918          544 AATSKEFDKAFPDRSFQSPLVDLLLKS-GR  572 (724)
Q Consensus       544 ~~~~~~l~~~~~~~~~~~~~l~~~v~~-g~  572 (724)
                      .+.++.+++.+++++.|++++.+|+++ |+
T Consensus       705 ~~~~~~l~~~~g~~~~p~~lL~~~~~~~g~  734 (737)
T TIGR02441       705 VDKMEKYAAAYGVQFTPCQLLLDHAKSPGK  734 (737)
T ss_pred             HHHHHHHHHHhCCCcCCCHHHHHHHHhcCC
Confidence            999999999999877799999999986 64

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.37  E-value=2.7e-11  Score=129.48  Aligned_cols=205  Identities=16%  Similarity=0.069  Sum_probs=134.1

Q ss_pred             cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCCCEEEEcccCC
Q 004918          320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES  398 (724)
Q Consensus       320 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~  398 (724)
                      |.+||..|+++||+|++||++++.++...  .    +...+.|             +..+++. +.+++||+||.|+|..
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~--~----~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~   92 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL--W----KKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG   92 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHH--H----HHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence            89999999999999999999998654311  0    1111222             3334444 5678999999999954


Q ss_pred             hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH----hcccCCCCCEEEEecCCCCCC----CCeeeEecCCC------C
Q 004918          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTER------T  464 (724)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~----~~~~~~~~r~ig~h~~~p~~~----~~lveii~~~~------t  464 (724)
                      . ..++++..+.+.++++++|++ +|+.+....    ...+..+.+.++.||++|...    ...++++.+..      .
T Consensus        93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~  170 (342)
T PRK12557         93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA  170 (342)
T ss_pred             H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence            4 467788899999999988774 555555433    244444445667877766532    12245665443      3


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCCchh---hhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHHH
Q 004918          465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL  535 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~d~pG~i---~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~g~~~Gp~~~~  535 (724)
                      +++.+++++++++.+|+++++++...|..   +|.++.+.    ..|++.+.+. |.+|.+.-+-+ ...  -.|--.++
T Consensus       171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~  248 (342)
T PRK12557        171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV  248 (342)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence            89999999999999999998877533333   24444333    3488888866 77776654443 221  13666777


Q ss_pred             HhhchHHHHHHH
Q 004918          536 DLAGYGVAAATS  547 (724)
Q Consensus       536 D~~Gld~~~~~~  547 (724)
                      -..|+|...+.+
T Consensus       249 ~~~~~~~~~~~~  260 (342)
T PRK12557        249 ETSGVDGLLKAL  260 (342)
T ss_pred             HHhChHHHHHhc
Confidence            777777665543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.36  E-value=7.5e-12  Score=138.63  Aligned_cols=201  Identities=19%  Similarity=0.177  Sum_probs=129.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH--hhcCcccccCc-cCcC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEFK  386 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~~~  386 (724)
                      ||+|||+|.||.++|..|+++||+|++||+++++++...+...    ...+.+ +. +....  ..++++.+++. ++++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~----~~~e~~-l~-~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS----PIYEPG-LD-ELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC----CCCCCC-HH-HHHHHhhhcCCeEEECCHHHHHh
Confidence            7999999999999999999999999999999998876432100    000000 00 00000  01346666676 4689


Q ss_pred             CCCEEEEcccCCh--------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhc-ccCC-------CCCEEEEecC
Q 004918          387 DVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRIIGAHFF  447 (724)
Q Consensus       387 ~aDlVIeav~e~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~-~~~~-------~~r~ig~h~~  447 (724)
                      +||+||.|||.+.        .....+.+.+.+.++++++|+. +|+.++.   ++.. ....       ..-.+..+| 
T Consensus        76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P-  153 (411)
T TIGR03026        76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP-  153 (411)
T ss_pred             hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence            9999999999764        3456677888888888887764 4444332   3321 1111       111233333 


Q ss_pred             CCCCCCC--e-------eeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----chhhhhh---hhHHHHHHHHHH
Q 004918          448 SPAHVMP--L-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV  509 (724)
Q Consensus       448 ~p~~~~~--l-------veii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~p-----G~i~nRl---~~~~~~Ea~~l~  509 (724)
                        ....+  .       .-++.|  .+++..+.++++++.++ +.++++++..     .++.|-+   ..+++||+..+.
T Consensus       154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la  229 (411)
T TIGR03026       154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC  229 (411)
T ss_pred             --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              21111  1       124445  38999999999999998 5777776522     1333433   257889999998


Q ss_pred             Hc-CCCHHHHHHHH
Q 004918          510 SL-GVDVFRIDSAI  522 (724)
Q Consensus       510 ~~-Gv~~~~ID~a~  522 (724)
                      +. |+++.++-.++
T Consensus       230 ~~~GiD~~~v~~~~  243 (411)
T TIGR03026       230 EALGIDVYEVIEAA  243 (411)
T ss_pred             HHhCCCHHHHHHHh
Confidence            77 99999988887

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02256 arogenate dehydrogenase

Probab=99.35  E-value=1.3e-11  Score=130.15  Aligned_cols=153  Identities=11%  Similarity=0.026  Sum_probs=111.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-  385 (724)
                      .+||+|||+|.||.++|..|.+.|++|++||+++.. +.+.           +.|             +...++.+ .+ 
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~   90 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE   90 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence            468999999999999999999999999999998632 1111           111             11123332 23 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHH-HhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCCCCCCCC------ee
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP------LL  456 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~------lv  456 (724)
                      .++|+||.|+|  +....+++.++ ...++++++|++.+|+  .++..+...++...+|++.||+.++....      .+
T Consensus        91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~  168 (304)
T PLN02256         91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF  168 (304)
T ss_pred             CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence            46999999999  66778888888 5678899999887774  45566666665555799999987775431      11


Q ss_pred             eEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          457 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       457 eii~~----~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      -+.+.    +.++++.++.+.++++.+|..++.+.
T Consensus       169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            11221    56788999999999999999999883

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.31  E-value=2.6e-11  Score=134.87  Aligned_cols=188  Identities=16%  Similarity=0.128  Sum_probs=124.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----cCc
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~  385 (724)
                      +|+|||+|.||.+||.+|+++|++|++|||++++++...+..        ..|.           .+...++.    +.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence            489999999999999999999999999999999877653210        0010           01112222    234


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH--hcccCCCCCEEEEecCCCCCCCCe------ee
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTSSQDRIIGAHFFSPAHVMPL------LE  457 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~--~~~~~~~~r~ig~h~~~p~~~~~l------ve  457 (724)
                      +.+|+||.|||.+.. ..+++.++.+.+.++.+|++.+++.+.+..  ...+..  +  |.||+..|..+..      .-
T Consensus        62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~--gi~fvdapVsGG~~gA~~G~~  136 (467)
T TIGR00873        62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--K--GILFVGSGVSGGEEGARKGPS  136 (467)
T ss_pred             CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--c--CCEEEcCCCCCCHHHHhcCCc
Confidence            679999999996544 456778898999999998876655544322  222221  1  4566543322211      12


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCee------EEEcCC-Cch---hh-hhhhhHH---HHHHHHHHH--cCCCHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF---AV-NRAFFPY---SQSARLLVS--LGVDVFRIDSA  521 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d~-pG~---i~-nRl~~~~---~~Ea~~l~~--~Gv~~~~ID~a  521 (724)
                      ++.|.  ++++++.++++++.++..+      .++++. .|.   ++ |-+.+.+   +.|++.+++  .|++++++-.+
T Consensus       137 im~GG--~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v  214 (467)
T TIGR00873       137 IMPGG--SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEV  214 (467)
T ss_pred             CCCCC--CHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            33332  7899999999999999874      677753 222   23 4444433   359999874  58999998888


Q ss_pred             HH
Q 004918          522 IR  523 (724)
Q Consensus       522 ~~  523 (724)
                      +.
T Consensus       215 ~~  216 (467)
T TIGR00873       215 FT  216 (467)
T ss_pred             HH
Confidence            84

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.31  E-value=2.1e-11  Score=151.16  Aligned_cols=187  Identities=16%  Similarity=0.092  Sum_probs=131.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -+||+|||+|.||.+||.+|+++||+|++|||++++.++..+           .|             ....++. +.++
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~a~   59 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG-------------GHRCDSPAEAAK   59 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CeecCCHHHHHh
Confidence            368999999999999999999999999999999998776432           22             1122333 6678


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEE--EecCCCCC--------
Q 004918          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFSPAH--------  451 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig--~h~~~p~~--------  451 (724)
                      +||+||.|+|++..++..++  ..+.+.+.++.+++. +|++.+.   +++..+...    |  .+|.+.|.        
T Consensus        60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~  134 (1378)
T PLN02858         60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLL  134 (1378)
T ss_pred             cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHh
Confidence            89999999998877766555  346677788887764 4455544   333333322    3  45554332        


Q ss_pred             CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCC-Cc---hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHH
Q 004918          452 VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSA  521 (724)
Q Consensus       452 ~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~-pG---~i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a  521 (724)
                      .+.+.-++.|   +++++++++++++.+|+.++++ ++. .|   .++|.++.    ..+.|++.+.+. |++++.+-.+
T Consensus       135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v  211 (1378)
T PLN02858        135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI  211 (1378)
T ss_pred             cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            3344445555   6889999999999999988865 652 22   24455543    334599988866 9999999888


Q ss_pred             H-HhcC
Q 004918          522 I-RSFG  526 (724)
Q Consensus       522 ~-~~~g  526 (724)
                      + .+.|
T Consensus       212 l~~s~g  217 (1378)
T PLN02858        212 ISNAAG  217 (1378)
T ss_pred             HhcCCc
Confidence            8 5554

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.31  E-value=6.7e-12  Score=120.35  Aligned_cols=129  Identities=17%  Similarity=0.265  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECcccc
Q 004918           31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (724)
Q Consensus        31 ~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  110 (724)
                      .+.+.+.+.|+.++.+..+ .+.|.+.|+...+                      ...++ +.|..++||||+.++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence            4677888888888877443 3444544432211                      12445 6688899999999999999


Q ss_pred             chhHHHHhhcCEEEEeCCceeeCcccccCccCCcc---------------hhhhhccccc--HHHHHHHHHcCCCCCHHH
Q 004918          111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE  173 (724)
Q Consensus       111 GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g---------------~~~~l~r~~G--~~~a~~l~ltg~~i~a~e  173 (724)
                      |+|+.++++||+|+++++++|+++....+..+...               ....+.+..|  .....+++.++..++++|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e  150 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE  150 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence            99999999999999999999999877666544322               1223667778  678888888888999999


Q ss_pred             HHHCCCccee
Q 004918          174 GWKLGLIDAV  183 (724)
Q Consensus       174 A~~~Glv~~v  183 (724)
                      |+++||||+|
T Consensus       151 A~~~GliD~v  160 (160)
T cd07016         151 AVELGFADEI  160 (160)
T ss_pred             HHHcCCCCcC
Confidence            9999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.31  E-value=1.4e-11  Score=123.31  Aligned_cols=153  Identities=22%  Similarity=0.292  Sum_probs=109.1

Q ss_pred             EEEEEeCCCCCCCCC---HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004918           15 VAIITLINPPVNALA---IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (724)
Q Consensus        15 v~~i~l~~p~~Nal~---~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (724)
                      |++|.++.+    ++   +.++.+|.++++.++.|+++++|||++    +|.|+|+....             ...+.+ 
T Consensus         2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-   59 (208)
T cd07023           2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-   59 (208)
T ss_pred             EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence            566777654    33   779999999999999999999999987    57899886531             122344 


Q ss_pred             HHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCCcchh------------
Q 004918           92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGFGGT------------  147 (724)
Q Consensus        92 ~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~~g~~------------  147 (724)
                      +.+..++|||||+++|.|.|+|+.|+++||++++++++.|+..-+.            +|+-+..-.+            
T Consensus        60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~  139 (208)
T cd07023          60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP  139 (208)
T ss_pred             HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence            5578889999999999999999999999999999999988643222            3332211100            


Q ss_pred             ------hhhccc-----------------ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHH
Q 004918          148 ------QRLPRL-----------------VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL  190 (724)
Q Consensus       148 ------~~l~r~-----------------~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~  190 (724)
                            ..+..+                 +.... .+-+..|..+++++|++.||||.+...++..
T Consensus       140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~  204 (208)
T cd07023         140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI  204 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence                  000011                 11111 2335678899999999999999998655543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.26  E-value=5.5e-11  Score=118.83  Aligned_cols=154  Identities=26%  Similarity=0.335  Sum_probs=107.7

Q ss_pred             EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004918           15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (724)
Q Consensus        15 v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (724)
                      |++|+++.+    ++ ...++|.++|+.+..|+++++|||+..    |.|+++...                ..+. +.|
T Consensus         2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i   55 (207)
T TIGR00706         2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL   55 (207)
T ss_pred             EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence            566666554    21 235789999999999999999999863    677776532                2233 456


Q ss_pred             hcCC--CcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCC---------cc-----h
Q 004918           95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FG-----G  146 (724)
Q Consensus        95 ~~~~--kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~---------~g-----~  146 (724)
                      ..++  ||+||.++|.|.|+|+.|+++||.++|++++.|+.-.+.            +|+-+.         .+     .
T Consensus        56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~  135 (207)
T TIGR00706        56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL  135 (207)
T ss_pred             HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence            6666  999999999999999999999999999999987653332            233210         00     0


Q ss_pred             h----hhh-----------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHH
Q 004918          147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (724)
Q Consensus       147 ~----~~l-----------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (724)
                      +    ..+                 .|-+......+ +..|+.+++++|++.||||++...+++.+...+
T Consensus       136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            0    001                 12223233333 467899999999999999999987777655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>PRK07680 late competence protein ComER; Validated

Probab=99.25  E-value=1.5e-10  Score=121.11  Aligned_cols=182  Identities=12%  Similarity=0.072  Sum_probs=124.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      ||+|||+|.||.+++..|.++|+    +|++|+|++++.+...+.                      ...+..+.+. +.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence            69999999999999999999994    799999999876543210                      0012233343 45


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeee-EecCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER  463 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~  463 (724)
                      +.+||+||.|++  +....++++++.+++.++++|++.+++.++..+...+.  .+.+..++..|......+. ++.+..
T Consensus        60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~  135 (273)
T PRK07680         60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR  135 (273)
T ss_pred             HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence            789999999998  77778889999888888888888888888888887664  3455566644322212222 335666


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCC------------CchhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHH
Q 004918          464 TSAQVILDLMTVGKIIKKVPVVVGNC------------TGFAVNRAFFPYSQSARLLVS-LGVDVFRIDSAI  522 (724)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~------------pG~i~nRl~~~~~~Ea~~l~~-~Gv~~~~ID~a~  522 (724)
                      .+++..+.+.+++..+|. ++.+.+.            |.|+.| ++.++...+   ++ .|++.++..+++
T Consensus       136 ~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~-~~~al~~~~---~~~~Gl~~~~a~~~~  202 (273)
T PRK07680        136 CSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSY-LLQRFIDAA---VEETNISKEEATTLA  202 (273)
T ss_pred             CCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHH-HHHHHHHHH---HHhcCCCHHHHHHHH
Confidence            688889999999999995 4455432            112222 122233333   34 588888766665

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.25  E-value=8.1e-11  Score=119.96  Aligned_cols=152  Identities=15%  Similarity=0.152  Sum_probs=127.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      ++||+|||+|+||.+|+..|.++|    .+|++.+++++..+...++                      ++... +++. 
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~   57 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ   57 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence            368999999999999999999999    5899999999987643221                      11112 3333 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEec-C
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-T  461 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~-~  461 (724)
                      +.+.++|+||.||.  ++...+++.++.+ ..++.+|+|...+++++.+...+. ..+++...|+.|...+..+..+. +
T Consensus        58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~  133 (266)
T COG0345          58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN  133 (266)
T ss_pred             HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence            67788999999997  8889999999988 778899999999999999999998 77899999999998888888775 5


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEE
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v  486 (724)
                      ...+++..+.+..+++.+|+...+-
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~v~~v~  158 (266)
T COG0345         134 ANVSEEDKAFVEALLSAVGKVVEVE  158 (266)
T ss_pred             ccCCHHHHHHHHHHHHhcCCeEEec
Confidence            7789999999999999999887653

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.25  E-value=1.9e-10  Score=121.26  Aligned_cols=186  Identities=13%  Similarity=0.058  Sum_probs=127.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|||.|.||.++|..|...|++|++++++.++.....          .+.|             +...+..++++.|
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A   74 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA   74 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence            6899999999999999999999999999888755432211          0111             1122222668899


Q ss_pred             CEEEEcccCChHHHHHHH-HHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCC-------CCCeeeEe-
Q 004918          389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV-  459 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~-------~~~lveii-  459 (724)
                      |+|+.+||..  ....++ +++.+.++++++| +..++..+.......+...+++-+.|..|.+       .+..+... 
T Consensus        75 DVVvLaVPd~--~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~  151 (330)
T PRK05479         75 DVIMILLPDE--VQAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI  151 (330)
T ss_pred             CEEEEcCCHH--HHHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence            9999999943  337787 7799999999988 7788888887766555556788888988887       44444433 


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcC-C-Cchhhhh-----hhhHHHHHHHHHH-HcCCCHHHHHH
Q 004918          460 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFAVNR-----AFFPYSQSARLLV-SLGVDVFRIDS  520 (724)
Q Consensus       460 -~~~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-pG~i~nR-----l~~~~~~Ea~~l~-~~Gv~~~~ID~  520 (724)
                       .....+.+..+.+..++..+|.++.     ..++ . .-..-.+     -+..++..+...+ +.|++|+.-.-
T Consensus       152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~  226 (330)
T PRK05479        152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYF  226 (330)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence             3445578999999999999998865     2322 1 1111111     1234555555444 55888776443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.25  E-value=7.1e-11  Score=128.80  Aligned_cols=197  Identities=16%  Similarity=0.170  Sum_probs=118.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (724)
                      ||+|||+|.||.++|..++. ||+|++||+++++++.+.+.+....+..++.      .......++..+++. +++++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~a   74 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRDA   74 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcCC
Confidence            79999999999999988875 9999999999999888765321111111110      000011345455554 567999


Q ss_pred             CEEEEcccCCh---------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCCCee
Q 004918          389 DMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPLL  456 (724)
Q Consensus       389 DlVIeav~e~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~~lv  456 (724)
                      |+||+|||++.         ....++.+.+.+ ++++.+|+. .||.++.   ++...+.  +.  ++.| +|....+.-
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G~  147 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREGK  147 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-CcccccCCc
Confidence            99999999874         344566677776 577777653 3444433   3333221  11  2222 333222111


Q ss_pred             ---------eEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcCC-----Cchhhhhhh---hHHHHHHHHHHHc-CCCH
Q 004918          457 ---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGNC-----TGFAVNRAF---FPYSQSARLLVSL-GVDV  515 (724)
Q Consensus       457 ---------eii~~~~t~~e~~~~~~~l~~~--lGk~~v-~v~d~-----pG~i~nRl~---~~~~~Ea~~l~~~-Gv~~  515 (724)
                               -++-|.  +++..+.+.+++..  ++..+. ++.+.     .-++.|-++   .+++||...+.+. |+++
T Consensus       148 a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~  225 (388)
T PRK15057        148 ALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT  225 (388)
T ss_pred             ccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence                     133332  34556777777754  554433 44432     113334332   4788999888877 9999


Q ss_pred             HHHHHHH
Q 004918          516 FRIDSAI  522 (724)
Q Consensus       516 ~~ID~a~  522 (724)
                      .++-+++
T Consensus       226 ~eV~~a~  232 (388)
T PRK15057        226 RQIIEGV  232 (388)
T ss_pred             HHHHHHh
Confidence            9988887

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.25  E-value=1e-12  Score=145.17  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             eEEEEcCCCCcHHHHH--HH----HHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      ||+|||+|.||.+.+.  .+    +.+|++|++||++++.++.....+++.+...    .        ...++..++|+ 
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~--------~~~~I~~ttD~~   69 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----G--------APLKIEATTDRR   69 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----C--------CCeEEEEeCCHH
Confidence            7999999999998666  23    4568899999999999888666554433211    1        11467778886 


Q ss_pred             cCcCCCCEEEEccc----------CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCC--CCCEEEEecCCCC
Q 004918          383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA  450 (724)
Q Consensus       383 ~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~--~~r~ig~h~~~p~  450 (724)
                      +++++||+||++++          |+...|..+++++.+.+.+++++.+++|...+.+++..+..  | +++.+||.||+
T Consensus        70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv  148 (423)
T cd05297          70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM  148 (423)
T ss_pred             HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence            78999999999998          35888999999999999999999999999999999988763  6 89999999999


Q ss_pred             CCC-----CeeeEecCCCCCHHHHHHHHHHHHHcCCee
Q 004918          451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP  483 (724)
Q Consensus       451 ~~~-----~lveii~~~~t~~e~~~~~~~l~~~lGk~~  483 (724)
                      ..+     +..+ ++.-++...+......+.+.+|..+
T Consensus       149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence            666     3333 2222222235666667777888643

linked to 3D####ucture

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.24  E-value=7.8e-11  Score=126.55  Aligned_cols=144  Identities=13%  Similarity=0.097  Sum_probs=106.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGG-GLMGSGIATAHIL-NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||. |.||+++|..|.+ .|++|+.+|++.+.                                   .++. +.+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence            58999999 9999999999986 48999999985221                                   1111 457


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhh---CCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCCC-----CCe
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-----MPL  455 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~~-----~~l  455 (724)
                      ++||+||.|+|  .....++++++.++   ++++++|++.+|+..  +..+   .....+|+|.||+..+..     +..
T Consensus        50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~  124 (370)
T PRK08818         50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV  124 (370)
T ss_pred             cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence            89999999999  88889999999876   689999987777653  2332   233346999999877653     333


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV  494 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~  494 (724)
                      +.+++.  ..++.++.++.+++.+|..++.+. +.+-.++
T Consensus       125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~  162 (370)
T PRK08818        125 MVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDRVM  162 (370)
T ss_pred             EEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHHHH
Confidence            445554  345568899999999999999883 3343333

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.24  E-value=1e-10  Score=122.51  Aligned_cols=153  Identities=14%  Similarity=0.043  Sum_probs=121.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      |.||+|||+|.||.+++..|.++|    ++|++|+++++. ++....          .            ...+..+++.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~----------~------------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD----------K------------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH----------H------------cCCeEEeCCH
Confidence            468999999999999999999998    789999987542 222110          0            0112223343


Q ss_pred             -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEec-
Q 004918          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-  460 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~-  460 (724)
                       +.++++|+||.|+|  ++...++++++.+.++++++|+|...++++.++...++. .+++.+.|+.|...+..+..+. 
T Consensus        59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~  135 (277)
T PRK06928         59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH  135 (277)
T ss_pred             HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence             45789999999999  777889999998888888888999999999999987753 4799999999888887777664 


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVV  485 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~  485 (724)
                      ++..+++..+.++.++..+|+...+
T Consensus       136 ~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        136 AETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            5677899999999999999988754

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.24  E-value=2e-10  Score=123.59  Aligned_cols=197  Identities=17%  Similarity=0.157  Sum_probs=121.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++...+.....  ... .+ .      .....+..+++. +.++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-~------~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-I------KLPDNLRATTDLAEALA   70 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-C------cCCCCeEEeCCHHHHHh
Confidence            35899999999999999999999999999999998877654311000  000 00 0      001123444555 4678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-------HHhcccCCCCCEEEEecCCCCC-------C
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------V  452 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-------~~~~~~~~~~r~ig~h~~~p~~-------~  452 (724)
                      +||+||.|+|  .....+++.++.+.+++++++++.++++...       .+..........  .....|..       .
T Consensus        71 ~~D~vi~~v~--~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~  146 (325)
T PRK00094         71 DADLILVAVP--SQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL  146 (325)
T ss_pred             CCCEEEEeCC--HHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence            9999999999  4567888899999888999887766554432       222222110111  11112221       1


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchh----------------------hhhh---hhHHHHHHHH
Q 004918          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFA----------------------VNRA---FFPYSQSARL  507 (724)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i----------------------~nRl---~~~~~~Ea~~  507 (724)
                      ..++.+ .+  .+.+.++.+.++++..|..+....+..|..                      .|.+   ....++|++.
T Consensus       147 ~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~  223 (325)
T PRK00094        147 PTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR  223 (325)
T ss_pred             CcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            122222 22  368899999999999998777666644421                      1222   2344457777


Q ss_pred             HHHc-CCCHHHHHHH
Q 004918          508 LVSL-GVDVFRIDSA  521 (724)
Q Consensus       508 l~~~-Gv~~~~ID~a  521 (724)
                      +.+. |++++.+...
T Consensus       224 la~~~G~d~~~~~~~  238 (325)
T PRK00094        224 LGVALGANPETFLGL  238 (325)
T ss_pred             HHHHhCCChhhhhcc
Confidence            7655 7777666443

>PLN02858 fructose-bisphosphate aldolase

Probab=99.24  E-value=6.4e-11  Score=146.86  Aligned_cols=190  Identities=18%  Similarity=0.202  Sum_probs=129.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ..++|+|||+|.||.+||.+|+++|++|++||+++++++...           +.|.            . ..++. +.+
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga------------~-~~~s~~e~~  378 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGG------------L-AGNSPAEVA  378 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC------------e-ecCCHHHHH
Confidence            358899999999999999999999999999999998876542           1121            1 12233 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCC--------CC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HV  452 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~--------~~  452 (724)
                      ++||+||.|||++.++...++.  .+.+.+.++.+++. +|+.++.   +++..+...  -.|.+|.+.|        ..
T Consensus       379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~  455 (1378)
T PLN02858        379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAM  455 (1378)
T ss_pred             hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhc
Confidence            8999999999977776655543  35666778887764 4444443   333333220  1256665544        22


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      +.+.-++.|   +++.+++++++++.+|+.+++++..+|     .++|.++    .+.+.|++.+.+. |++++.+-+++
T Consensus       456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl  532 (1378)
T PLN02858        456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII  532 (1378)
T ss_pred             CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            233334444   688999999999999998877644345     2445553    3445699988866 99999988877


Q ss_pred             -HhcC
Q 004918          523 -RSFG  526 (724)
Q Consensus       523 -~~~g  526 (724)
                       .+.|
T Consensus       533 ~~s~g  537 (1378)
T PLN02858        533 SNAGG  537 (1378)
T ss_pred             Hhhcc
Confidence             5544

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.23  E-value=6.2e-10  Score=116.29  Aligned_cols=203  Identities=18%  Similarity=0.144  Sum_probs=133.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH---HHHhhcCcccccCccCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK---ANNALKMLKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~~  385 (724)
                      .+|+|||+|.+|.++|..++++|++|+.+|+|+.+++.........    .+   .+.++   .....+++++|++.+.+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i----~e---~~~~~~v~~~v~~g~lraTtd~~~l   82 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYI----EE---PDLDEVVKEAVESGKLRATTDPEEL   82 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCccee----ec---CcHHHHHHHHHhcCCceEecChhhc
Confidence            7899999999999999999999999999999999988764321000    00   01111   11122578889999999


Q ss_pred             CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcc-------cCCCCCEEEEecCC
Q 004918          386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEK-------TSSQDRIIGAHFFS  448 (724)
Q Consensus       386 ~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~-------~~~~~r~ig~h~~~  448 (724)
                      +.||++|.|||.        |+.......+.|.++++++.+++.-+++.|-  +++...       +..+..|.-.|  .
T Consensus        83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay--s  160 (436)
T COG0677          83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY--S  160 (436)
T ss_pred             ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee--C
Confidence            999999999985        5566777788899999999988754444332  223221       22222332222  3


Q ss_pred             CCCCCCe---ee------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC----chhh-h--h-hhhHHHHHHHHHHHc
Q 004918          449 PAHVMPL---LE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GFAV-N--R-AFFPYSQSARLLVSL  511 (724)
Q Consensus       449 p~~~~~l---ve------ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~p----G~i~-n--R-l~~~~~~Ea~~l~~~  511 (724)
                      |-+.+|.   .|      ++.|  .+++..+.+..|++.+=+..+.+.+..    --+. |  | +-.++.||-..+.++
T Consensus       161 PERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~  238 (436)
T COG0677         161 PERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA  238 (436)
T ss_pred             ccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            4333332   23      3333  379999999999999877766654422    1122 3  2 235888996666644


Q ss_pred             -CCCHHHHHHHH
Q 004918          512 -GVDVFRIDSAI  522 (724)
Q Consensus       512 -Gv~~~~ID~a~  522 (724)
                       |++..++=.+.
T Consensus       239 ~GIdvwevIeaA  250 (436)
T COG0677         239 MGIDVWEVIEAA  250 (436)
T ss_pred             hCCcHHHHHHHh
Confidence             99887755554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.22  E-value=1.6e-10  Score=121.36  Aligned_cols=198  Identities=19%  Similarity=0.264  Sum_probs=134.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      +||+|||+|..|...+.+|+..||+|+.+|+++++++......    +..++.+++.+..+        +|+++|+|+ +
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence            4899999999999999999999999999999999999876542    33455555544322        579999999 5


Q ss_pred             CcCCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccC--CCCC-E-EEEe---
Q 004918          384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGAH---  445 (724)
Q Consensus       384 ~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~--~~~r-~-ig~h---  445 (724)
                      +++++|++|.||+.        |......+.+++.++++..++|+ +-||.|+.   .+...+.  .+.+ | +.+.   
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence            78999999999975        55577788899999998876665 45666653   2222111  1111 1 1111   


Q ss_pred             ---------cCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCC-----chhhhhhhh---HHHHHHH
Q 004918          446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT-----GFAVNRAFF---PYSQSAR  506 (724)
Q Consensus       446 ---------~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~p-----G~i~nRl~~---~~~~Ea~  506 (724)
                               |++|..+     ++...  ++++.+.+++++..+  ...|++..+..     -+..|-++.   +++||..
T Consensus       152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia  224 (414)
T COG1004         152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA  224 (414)
T ss_pred             hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     2444433     34332  334566666666554  45566553322     345565553   7889988


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 004918          507 LLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       507 ~l~~~-Gv~~~~ID~a~  522 (724)
                      .+.+. |++..+|-..+
T Consensus       225 ~ice~~g~D~~~V~~gI  241 (414)
T COG1004         225 NICEKVGADVKQVAEGI  241 (414)
T ss_pred             HHHHHhCCCHHHHHHHc
Confidence            88877 99999988876

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.21  E-value=1.1e-11  Score=128.47  Aligned_cols=167  Identities=17%  Similarity=0.157  Sum_probs=111.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++||+|||+|.||+++|..|+++||+|++|.|+++.+++.....  .-.+++....+        ...+.+++|+ ++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~--~N~~yLp~i~l--------p~~l~at~Dl~~a~~   70 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETR--ENPKYLPGILL--------PPNLKATTDLAEALD   70 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcC--cCccccCCccC--------CcccccccCHHHHHh
Confidence            36899999999999999999999999999999999988865431  11223332222        2567788888 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH------HHHhcccCCCCCEEEEecCCCCCC-------C
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------NIVGEKTSSQDRIIGAHFFSPAHV-------M  453 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~------~~~~~~~~~~~r~ig~h~~~p~~~-------~  453 (724)
                      +||+|+.+||  .+..+++++++.+.+++++++++.+.++..      +++....-....+..   ...|..       .
T Consensus        71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~v---LSGPs~A~EVa~g~  145 (329)
T COG0240          71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAV---LSGPSFAKEVAQGL  145 (329)
T ss_pred             cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEE---EECccHHHHHhcCC
Confidence            8999999999  999999999998899999999887766543      344333222122211   122211       1


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      |...++.+  .+++..+.++.++..=-.++....|..|
T Consensus       146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G  181 (329)
T COG0240         146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG  181 (329)
T ss_pred             CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence            11122222  3677777777777664444444456544

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.21  E-value=5.3e-10  Score=121.09  Aligned_cols=168  Identities=11%  Similarity=0.061  Sum_probs=106.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CC---HHHHHHhhcCcccccCcc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~  383 (724)
                      ++||+|||+|.||+.+|..|+++|++|++||+++. .+...+           .|. +.   ..+......++..+++.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~   69 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-----------HGLTLTDYRGRDVRVPPSAIAFSTDPA   69 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-----------cCceeecCCCcceecccceeEeccChh
Confidence            46899999999999999999999999999999653 222111           110 00   000000112344555667


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEEEEecCCCCCCCCe-------
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHVMPL-------  455 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~h~~~p~~~~~l-------  455 (724)
                      +++++|+||+||+.  ....++++++.+.++++++|++.++++... .+...+.....+.+.+++......+.       
T Consensus        70 ~~~~~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~  147 (341)
T PRK08229         70 ALATADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS  147 (341)
T ss_pred             hccCCCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence            78899999999984  345688899999999999888777777643 45555543222334444321111110       


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~  492 (724)
                      -++.-+   ..+.++++.++++..|..+.+.+|.-+.
T Consensus       148 g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~  181 (341)
T PRK08229        148 GALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAV  181 (341)
T ss_pred             CceEec---CCchHHHHHHHHHhcCCCceecchhHHH
Confidence            011112   1245688999999999888888886543

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.20  E-value=4.4e-10  Score=116.67  Aligned_cols=179  Identities=11%  Similarity=0.101  Sum_probs=124.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ||+|||+|.||.+|+..|.+.|++   +.+|++++++.+...+.+                      .....+++. +.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------PKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc----------------------CCceEeCCHHHHH
Confidence            799999999999999999999864   588999988765532210                      112223344 456


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      ++||+||.|+|  ++...+++.++.  ..++.+|+|...+.++..+...+....+.+..||..|......+..+...   
T Consensus        60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~---  132 (258)
T PRK06476         60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP---  132 (258)
T ss_pred             HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence            78999999999  666678887762  45777888888899999999888765678888887766554444444332   


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcC--C------CchhhhhhhhHHHHHHHHHH-HcCCCHHHHHHHH
Q 004918          466 AQVILDLMTVGKIIKKVPVVVGN--C------TGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI  522 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d--~------pG~i~nRl~~~~~~Ea~~l~-~~Gv~~~~ID~a~  522 (724)
                         .+.++++++.+|..+.+..+  .      .++..|  ++.++.++.... +.|+++++..+++
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~  193 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL  193 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence               25889999999988764322  1      112222  223455665554 4589988877766

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.19  E-value=1.6e-10  Score=127.49  Aligned_cols=200  Identities=17%  Similarity=0.131  Sum_probs=123.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||+|.||.++|.+|++ ||+|++||+++++++...+.....    .+.   ..++... .+++.++++.+.+++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~~-~g~l~~t~~~~~~~~a   77 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELRE-ARYLKFTSEIEKIKEC   77 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence            589999999999999999887 699999999999988754211000    000   0111111 2456777877788999


Q ss_pred             CEEEEcccCCh--------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHh-cccCC------CCCEEEEecCCCC
Q 004918          389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA  450 (724)
Q Consensus       389 DlVIeav~e~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~-~~~~~------~~r~ig~h~~~p~  450 (724)
                      |+||.|||.+.        .......+.+.++++++.+|+. .||.++.   ++. ..+..      -..|.-.|  +|.
T Consensus        78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE  154 (425)
T PRK15182         78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPE  154 (425)
T ss_pred             CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCC
Confidence            99999999652        2333334678888888887764 3333332   121 11111      11122221  222


Q ss_pred             CCCC---------eeeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcC-CCc---hhhhhhh----hHHHHHHHHHHHc-
Q 004918          451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-CTG---FAVNRAF----FPYSQSARLLVSL-  511 (724)
Q Consensus       451 ~~~~---------lveii~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~pG---~i~nRl~----~~~~~Ea~~l~~~-  511 (724)
                      ...+         +--++.|.  +++..+.+..+++.+. ..++++.+ ..+   .++|..+    .+++||+..+.+. 
T Consensus       155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~  232 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL  232 (425)
T ss_pred             cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2211         11245553  5788899999999986 34555544 112   2333332    5788999988877 


Q ss_pred             CCCHHHHHHHH
Q 004918          512 GVDVFRIDSAI  522 (724)
Q Consensus       512 Gv~~~~ID~a~  522 (724)
                      |+++.++-+++
T Consensus       233 GiD~~~v~~a~  243 (425)
T PRK15182        233 NIDTEAVLRAA  243 (425)
T ss_pred             CcCHHHHHHHh
Confidence            99999988877

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.19  E-value=7.3e-10  Score=114.15  Aligned_cols=188  Identities=13%  Similarity=0.127  Sum_probs=129.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC---c-EEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~---~-V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      ..||+|||+|.||.+++..++++|+   + +++++++ ++.++...+.          .+             +..+++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~   60 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW   60 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence            3589999999999999999998873   3 7778874 5655443211          01             2223344


Q ss_pred             -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-c
Q 004918          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  460 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~  460 (724)
                       +.++++|+||.|+|  .+..+++++++.++++ +.+|+|.+.+++++.+...+....+++..||..|...+..+..+ .
T Consensus        61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence             45789999999999  6677888898887766 56888999999999998888655578888997776555554433 4


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhh-------hhhhHHHHHHHH-HHHcCCCHHHHHHHH
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN-------RAFFPYSQSARL-LVSLGVDVFRIDSAI  522 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~n-------Rl~~~~~~Ea~~-l~~~Gv~~~~ID~a~  522 (724)
                      ....+++..+.++.++..+|..+.+ .+.--....       -+++.++..... .++.|+++++-.+++
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~  206 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV  206 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5567899999999999999999864 321111111       111222222222 345588887766665

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.18  E-value=4.3e-10  Score=118.86  Aligned_cols=202  Identities=11%  Similarity=0.045  Sum_probs=136.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.||.++|..|...|++|+++++. ++..+.+.           +.|             +...+..+.+++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence            67999999999999999999999998876554 33333321           112             122232356789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCC-------CCeeeEe-
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLEIV-  459 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~-------~~lveii-  459 (724)
                      ||+|+.++|... ....+.+++.+.++++. ++|...++++..+....+...+++-+.|..|.+.       +..+..+ 
T Consensus        60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~  137 (314)
T TIGR00465        60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI  137 (314)
T ss_pred             CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence            999999999432 35566677888888886 5678889999888777765567999999999974       6665433 


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-CCCch--hhhhhhhHHHH---HHHHHHHcCCCHHHHHHHH-
Q 004918          460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTGF--AVNRAFFPYSQ---SARLLVSLGVDVFRIDSAI-  522 (724)
Q Consensus       460 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~pG~--i~nRl~~~~~~---Ea~~l~~~Gv~~~~ID~a~-  522 (724)
                       .+...+.+..+.+..++..+|..       ..  .+. +.=+-  ++.=..-+|+.   |++  ++.|++++.-.... 
T Consensus       138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~  215 (314)
T TIGR00465       138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV  215 (314)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence             56667889999999999999988       21  111 10010  00101112222   555  78899998766665 


Q ss_pred             HhcCCCccHHHHHHhhchH
Q 004918          523 RSFGLPIGPFQLLDLAGYG  541 (724)
Q Consensus       523 ~~~g~~~Gp~~~~D~~Gld  541 (724)
                      ..+   .|-..++-..|+.
T Consensus       216 ~~~---~g~~~l~~e~g~~  231 (314)
T TIGR00465       216 HEL---KLIVDLIYEGGIT  231 (314)
T ss_pred             HHH---HHHHHHHHHhcHH
Confidence            322   4666777666763

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.16  E-value=5.1e-10  Score=133.50  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=117.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      .++||+|||+|.||.+++..+.+.|  ++|++||++++.++.+.           +.|...           ...++. +
T Consensus         2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~   59 (735)
T PRK14806          2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAE   59 (735)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHH
Confidence            3589999999999999999999999  48999999998766532           122110           112233 4


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC-CCCCEEEEecCCCCC---------
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------  451 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~-~~~r~ig~h~~~p~~---------  451 (724)
                      .+++||+||+|+|  .+...++++++.++++++++|++.+|..  .+..+...+. ...||++.||...+.         
T Consensus        60 ~~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~  137 (735)
T PRK14806         60 AVSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANA  137 (735)
T ss_pred             HhcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhh
Confidence            5789999999999  6778899999999888888776544432  2455555543 356899999975332         


Q ss_pred             ---CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          452 ---VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       452 ---~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                         ....+.+++...++++..+.+.++++.+|..++++.
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~  176 (735)
T PRK14806        138 DLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD  176 (735)
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence               234456788888899999999999999999998884

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.14  E-value=7.6e-10  Score=111.84  Aligned_cols=162  Identities=16%  Similarity=0.114  Sum_probs=107.9

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       310 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ||+||| +|.||+++|..|+++|++|++++|++++++.........   ....|. .        ..+..+++.++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g~-~--------~~~~~~~~~ea~~~a   69 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGGS-D--------IKVTGADNAEAAKRA   69 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccCC-C--------ceEEEeChHHHHhcC
Confidence            799997 899999999999999999999999998876644322110   001110 0        012223334678899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-----------------HHHhcccCCCCCEEEEecCCCCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPAH  451 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-----------------~~~~~~~~~~~r~ig~h~~~p~~  451 (724)
                      |+||.|+|  .+...++++++.+.++. ++|++.+.++..                 ..++..++...+++....+.+..
T Consensus        70 DvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~  146 (219)
T TIGR01915        70 DVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAV  146 (219)
T ss_pred             CEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHH
Confidence            99999999  77777888888776654 777777666654                 23444443325666654322221


Q ss_pred             -------CCCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004918          452 -------VMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  488 (724)
Q Consensus       452 -------~~~lveii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d  488 (724)
                             ..+....+.|+  ++++.+.+..+.+.+ |..|+.++.
T Consensus       147 ~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       147 LLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence                   11122234454  677899999999999 999988764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.12  E-value=1.3e-09  Score=113.14  Aligned_cols=144  Identities=16%  Similarity=0.150  Sum_probs=111.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ||+|||+|+||++|+..|.++|.    ++++++++++..                 +            .....++.+.+
T Consensus         5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~~   55 (260)
T PTZ00431          5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEELA   55 (260)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHHH
Confidence            79999999999999999999873    499999887531                 0            01111222456


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE-ecCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRTERT  464 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-i~~~~t  464 (724)
                      .+||+||.|++  ++...+++.++.++++++ +|+|..+++..+.+...+....+++.+.|..|......+.+ .+...+
T Consensus        56 ~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~  132 (260)
T PTZ00431         56 KTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNV  132 (260)
T ss_pred             HhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCC
Confidence            78999999998  888999999998887764 56788899999888887765545677777777766655544 456677


Q ss_pred             CHHHHHHHHHHHHHcCCeeEE
Q 004918          465 SAQVILDLMTVGKIIKKVPVV  485 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~  485 (724)
                      +++..+.+..+++.+|....+
T Consensus       133 ~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        133 DSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             CHHHHHHHHHHHHhCCcEEEE
Confidence            899999999999999988765

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.10  E-value=6e-11  Score=113.30  Aligned_cols=105  Identities=23%  Similarity=0.228  Sum_probs=79.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (724)
                      ||+|||+|.||.++|..|+++|++|++|.++++.++...+...+       ...+..   ......+..++|+ ++++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n-------~~~~~~---~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQN-------PKYLPG---IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSE-------TTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCC-------CCCCCC---cccCcccccccCHHHHhCcc
Confidence            79999999999999999999999999999999887765432110       000110   1122457778888 678999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (724)
                      |+||.+||  ....+++++++.++++++++|++.+.++
T Consensus        71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999  8888999999999999999999888776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02712 arogenate dehydrogenase

Probab=99.09  E-value=1.1e-09  Score=127.07  Aligned_cols=154  Identities=11%  Similarity=0.053  Sum_probs=108.7

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  385 (724)
                      +.+||+|||+|.||.++|..|.+.|++|++||++.+. +.+.           +.|             +...++.+. +
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence            3468999999999999999999999999999998642 2211           112             112334432 4


Q ss_pred             C-CCCEEEEcccCChHHHHHHHHHHHh-hCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecCCCCCCCC-----ee
Q 004918          386 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL  456 (724)
Q Consensus       386 ~-~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-----lv  456 (724)
                      . +||+||.|+|  ......++.++.. .++++++|++.+|+  .++..+....+...+|++.||..++....     ..
T Consensus       423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 5899999999  6677788888765 57889999887776  44555555555545799999988776541     11


Q ss_pred             -----eEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          457 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       457 -----eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                           -++.++....+.++.+..++..+|.+++.+.
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence                 1123334455667778899999999998873

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.09  E-value=6.4e-10  Score=119.68  Aligned_cols=165  Identities=15%  Similarity=0.106  Sum_probs=97.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.+||..|+++|++|++|+|+++..+.......+.  .... |.       ....++..+++. +.+++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~~-g~-------~~~~~~~~~~~~~e~~~~   74 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYLP-GV-------ALPAELYPTADPEEALAG   74 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccCC-CC-------cCCCCeEEeCCHHHHHcC
Confidence            4899999999999999999999999999999998876654211110  0000 10       011124445555 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HHHHhcccCC--CCCEE-EEecCCCCCC---CCee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~~~~~~~~~--~~r~i-g~h~~~p~~~---~~lv  456 (724)
                      ||+||+|+|..  ..++++    +.+++++++++.++++.     ...++..+..  ..++. ..-|..+...   .+..
T Consensus        75 aD~Vi~~v~~~--~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~  148 (328)
T PRK14618         75 ADFAVVAVPSK--ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAA  148 (328)
T ss_pred             CCEEEEECchH--HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeE
Confidence            99999999955  234444    44567777776666543     2233333321  11211 1111111111   0122


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      .++.+  .+++.++.+++++...|..+.+..|.-|
T Consensus       149 ~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g  181 (328)
T PRK14618        149 TVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG  181 (328)
T ss_pred             EEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            23333  3788999999999999988775444333

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.08  E-value=6.7e-10  Score=112.28  Aligned_cols=146  Identities=21%  Similarity=0.222  Sum_probs=107.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~  106 (724)
                      .-+...+.+|.+.|+.+..|++|++|||+..+..| ++.+++++.                +.+ +.+...+|||||.++
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~   86 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD   86 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence            34567899999999999999999999999888777 777776652                333 446668999999999


Q ss_pred             ccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCccCC---------cchhhh-----------h----
Q 004918          107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQR-----------L----  150 (724)
Q Consensus       107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~P~---------~g~~~~-----------l----  150 (724)
                      | |.++|+.|+++||.+++.+.+.|+..-+.            +|+-+.         .+..+.           +    
T Consensus        87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l  165 (222)
T cd07018          87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL  165 (222)
T ss_pred             C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence            8 88999999999999999999999885432            232221         111110           0    


Q ss_pred             -------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHH
Q 004918          151 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV  192 (724)
Q Consensus       151 -------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~  192 (724)
                                   .|.+...... -+..|..+++++|++.||||++...+++.+.
T Consensus       166 ~~~~~~f~~~Va~~R~~~~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         166 DSLWDQYLADVAASRGLSPDALE-ALIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHH-HHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence                         1111222222 2345999999999999999999987777654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.06  E-value=2.4e-09  Score=114.10  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.++|..|+.+||+|++|+|++..                                     ++ +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence            47999999999999999999999999999998631                                     11 34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEEecCCCCCHHH------HhcccCCCCCEEEEecCCCCC------CCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP  454 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~------~~~~~~~~~r~ig~h~~~p~~------~~~  454 (724)
                      +|+||.|+|.  ...+.++.++.++ +++++++++.++++.+..      +....-...+++.+  ..|..      ..+
T Consensus        48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i--~gp~~a~ei~~~~~  123 (308)
T PRK14619         48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVL--SGPNLSKEIQQGLP  123 (308)
T ss_pred             CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEE--ECCCcHHHHhcCCC
Confidence            9999999994  5677888888764 678888887766444331      11111011122211  11211      001


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      ..-++.+.  +.+..+.+++++...|..++..+|.-|
T Consensus       124 ~~~~~ag~--~~~~~~~v~~ll~~~~~~~~~~~d~~G  158 (308)
T PRK14619        124 AATVVASR--DLAAAETVQQIFSSERFRVYTNSDPLG  158 (308)
T ss_pred             eEEEEEeC--CHHHHHHHHHHhCCCcEEEEecCCchh
Confidence            12222332  688999999999999988886666444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.05  E-value=1.1e-10  Score=123.53  Aligned_cols=85  Identities=13%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHH-HHHHHHHHHhhhCC---CC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FF  694 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~  694 (724)
                      +++||.||++.+++|||++++++|++ |++|||.+++.|+|+|...-|||+++|++|+|. +.+.++.+.+.+..   .+
T Consensus       186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~  264 (321)
T PRK07066        186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKL  264 (321)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhc
Confidence            58999999999999999999999999 999999999999999854559999999999997 44444555444321   23


Q ss_pred             CCCHHHHHHH
Q 004918          695 KPSRFLEERA  704 (724)
Q Consensus       695 ~p~~~l~~~~  704 (724)
                      .+++++.+++
T Consensus       265 ~~p~~~~~~~  274 (321)
T PRK07066        265 VAPELTDALI  274 (321)
T ss_pred             CCCcccHHHH
Confidence            4444555554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.05  E-value=1e-08  Score=114.31  Aligned_cols=203  Identities=15%  Similarity=0.142  Sum_probs=127.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      ++||+|||+|.+|..+|..|+++|  ++|+++|+++++++...+..    +..++.++..         ..-.++.++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~---------~~~~~l~~t~~   71 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ---------CRGKNLFFSTD   71 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHH---------hhcCCEEEEcC
Confidence            358999999999999999999984  78999999999988764321    1111111110         01135888888


Q ss_pred             c-cCcCCCCEEEEcccC-------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCC--C-CCE
Q 004918          382 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--Q-DRI  441 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~--~-~r~  441 (724)
                      + +++++||++|.|||.             |......+.++|.++++++++|+. .|+.++.   .+...+..  + ..|
T Consensus        72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f  150 (473)
T PLN02353         72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF  150 (473)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence            7 468999999999963             333677888899999999887763 3333332   22221111  0 111


Q ss_pred             EEEecCCCCCCCCe---------eeE-ecCCC--CCHHHHHHHHHHHHHcCC-eeEEEcC-----CCchhhhhh---hhH
Q 004918          442 IGAHFFSPAHVMPL---------LEI-VRTER--TSAQVILDLMTVGKIIKK-VPVVVGN-----CTGFAVNRA---FFP  500 (724)
Q Consensus       442 ig~h~~~p~~~~~l---------vei-i~~~~--t~~e~~~~~~~l~~~lGk-~~v~v~d-----~pG~i~nRl---~~~  500 (724)
                      --.  ++|-.+.+.         .-+ +.+..  +.+++.+.+..++..+-+ .++.+.+     ..-++.|-+   -.+
T Consensus       151 ~v~--~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia  228 (473)
T PLN02353        151 QIL--SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS  228 (473)
T ss_pred             EEE--ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence            111  122211111         113 34432  126678999999998753 4444432     223444543   358


Q ss_pred             HHHHHHHHHHc-CCCHHHHHHHH
Q 004918          501 YSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       501 ~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      ++||...+.+. |+++.+|-.++
T Consensus       229 f~NEla~lce~~giD~~eV~~~~  251 (473)
T PLN02353        229 SVNAMSALCEATGADVSQVSHAV  251 (473)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHh
Confidence            89998877766 99999988888

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.04  E-value=3.6e-10  Score=120.21  Aligned_cols=126  Identities=20%  Similarity=0.315  Sum_probs=94.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .+||+|||+|.||.++|..++..|+ +|+++|++++.+..-.      ++.....      .......++..++++++++
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~   73 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA   73 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence            3699999999999999999999996 9999999998753211      1111110      0011123567678889999


Q ss_pred             CCCEEEEcc-------------------cCChHHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHHhcccCCC-CCEEEEe
Q 004918          387 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  445 (724)
Q Consensus       387 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h  445 (724)
                      +||+||+++                   .++..+++++.+++.+++++. .|++||++.+....+......| .|++|++
T Consensus        74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            999999955                   567888999999999999774 4556888888777777766654 7888875

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.04  E-value=4.4e-09  Score=102.12  Aligned_cols=154  Identities=18%  Similarity=0.146  Sum_probs=105.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      |++++|+|+|.||+++|..|+++||+|++-.++.+ +.+.+.+.+                     ...++..+..++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence            57899999999999999999999999999966554 444332211                     12355566668889


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC----------------CHHH-HhcccCCCCCEEE-Eec--
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI----------------DLNI-VGEKTSSQDRIIG-AHF--  446 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~----------------~~~~-~~~~~~~~~r~ig-~h~--  446 (724)
                      .||+||.+||  ......+.+++...+. +.|+++.|..+                +.++ +++.++.. +++. .|-  
T Consensus        60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~  135 (211)
T COG2085          60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP  135 (211)
T ss_pred             cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence            9999999999  8888899999988776 67777655432                1122 22223322 3322 121  


Q ss_pred             ----CCCCCC-CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          447 ----FSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       447 ----~~p~~~-~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                          -+-+.. .+..-.++|.  |.++.+.+.++.+.+|..|+-++.
T Consensus       136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence                111111 3444455554  889999999999999999998865

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.01  E-value=4.1e-09  Score=109.17  Aligned_cols=140  Identities=17%  Similarity=0.140  Sum_probs=101.8

Q ss_pred             HHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcccCChH
Q 004918          323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP  400 (724)
Q Consensus       323 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~  400 (724)
                      ||..|.++|  ++|+.||++++.++.+.           +.|.++           ...++.+.+++||+||.|+|  +.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIID-----------EASTDIEAVEDADLVVLAVP--VS   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence            688899999  68999999999877753           233322           01122467899999999999  89


Q ss_pred             HHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCC------------CCCCeeeEecCCCCCH
Q 004918          401 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA  466 (724)
Q Consensus       401 ~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~------------~~~~lveii~~~~t~~  466 (724)
                      ...++++++.++++++++|++.+|..  ++..+........+|+|.||...+            ..+..+.+++++.+++
T Consensus        57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence            99999999999999999998766653  334555555556789999997665            2456678889999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE
Q 004918          467 QVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v  486 (724)
                      +.++.+..+++.+|..++.+
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEM  156 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE-
T ss_pred             HHHHHHHHHHHHCCCEEEEc
Confidence            99999999999999998887

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.01  E-value=2.1e-09  Score=104.06  Aligned_cols=145  Identities=23%  Similarity=0.319  Sum_probs=101.0

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      .+|.++.    .+++...+.+.++|+++++++ ++.|||.=.    |.|+++..                ...++ +.|.
T Consensus         2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~----------------~~~I~-~~l~   55 (178)
T cd07021           2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS----------------ALEIV-DLIL   55 (178)
T ss_pred             EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH----------------HHHHH-HHHH
Confidence            4555544    377788889999999998876 677777311    12233221                22445 6688


Q ss_pred             cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchh--------hh------hcccc--cHHHH
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLV--GLSKA  159 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~--------~~------l~r~~--G~~~a  159 (724)
                      .+++|||+.|+|.|.++|+.++++||++++++++.|+.+++-    +..|+.        ..      +.+.-  ....+
T Consensus        56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a  131 (178)
T cd07021          56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA  131 (178)
T ss_pred             hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            899999999999999999999999999999999999988553    322221        11      11111  23455


Q ss_pred             HHHHHcC-------------CCCCHHHHHHCCCcceecC-cchHH
Q 004918          160 IEMMLLS-------------KSITSEEGWKLGLIDAVVT-SEELL  190 (724)
Q Consensus       160 ~~l~ltg-------------~~i~a~eA~~~Glv~~vv~-~~~l~  190 (724)
                      ..|+-..             -.++++||++.|++|.+.+ .++|.
T Consensus       132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            5565544             3799999999999999985 34443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.98  E-value=6.7e-10  Score=117.81  Aligned_cols=122  Identities=18%  Similarity=0.291  Sum_probs=88.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      |+|||+|.||.++|..++..|+ +|+++|++++.++...-.+...    .        .......++..+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~----~--------~~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA----A--------PILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh----h--------hhcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 9999999987543211111110    0        0111123566667788899999


Q ss_pred             EEEEcc--------------cCChHHHHHHHHHHHhhCCCCcE-EEecCCCCCHHHHhcccCC-CCCEEEE
Q 004918          390 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA  444 (724)
Q Consensus       390 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~~~~~~~~~~~-~~r~ig~  444 (724)
                      +||+++              +++..+++++++++.++++++.+ ++||.+.+....+...... |.|++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999866              67889999999999999987774 4578777766666665553 4677775

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.97  E-value=4.8e-08  Score=100.61  Aligned_cols=147  Identities=18%  Similarity=0.133  Sum_probs=96.2

Q ss_pred             cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccCcCCCCEEEEcccCC
Q 004918          320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFKDVDMVIEAVIES  398 (724)
Q Consensus       320 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~  398 (724)
                      |.+||.+|+++||+|++||+++++.+....      +.+.+.|             ...+++ .+++++||+||.|+|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~------e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~   92 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLW------KKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG   92 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhh------HHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence            889999999999999999999876542110      1112222             222333 37788999999999955


Q ss_pred             hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCC----C---CCEEEEecCCCC-CCCCeeeEecCC------CC
Q 004918          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS----Q---DRIIGAHFFSPA-HVMPLLEIVRTE------RT  464 (724)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~----~---~r~ig~h~~~p~-~~~~lveii~~~------~t  464 (724)
                      ..+ ++++..+.+.++++++|+ ++||+++..+...+..    .   -.+..+||-.-| ....-.-++.+.      ..
T Consensus        93 aaV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A  170 (341)
T TIGR01724        93 KGT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA  170 (341)
T ss_pred             HHH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence            444 455677888899999875 5677776655443321    2   235556663211 111111233322      23


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEc
Q 004918          465 SAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      ++|.++++.++.+..|+.+.++.
T Consensus       171 ~ee~i~~~~el~~~~~~~~~~~p  193 (341)
T TIGR01724       171 TEEQISKCVELAKSTGKKAYVVP  193 (341)
T ss_pred             CHHHHHHHHHHHHHhCCCeeecc
Confidence            89999999999999999998873

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.97  E-value=1.3e-09  Score=116.19  Aligned_cols=125  Identities=18%  Similarity=0.286  Sum_probs=84.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      |+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+....   .         ......+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence            5799999999999999999999876 99999999887543221111110   0         011123566667888899


Q ss_pred             CCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEE-EecCCCCCHHHHhcccC-CCCCEEEE
Q 004918          387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii-~s~ts~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      +||+||+++              .++.++++++++++.+.+++..+| +||.+......+..... .+.+++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999987              356688999999999998665333 45555444333333333 23566664

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.95  E-value=1.4e-09  Score=115.91  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=91.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      .||+|||+|.||.++|..++..| .+|+++|++++.++...-++...    .        .......++..+++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----~--------~~~~~~~~i~~~~d~~~l~~   73 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----S--------TLVGSNINILGTNNYEDIKD   73 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----c--------cccCCCeEEEeCCCHHHhCC
Confidence            58999999999999999999999 69999999988754211111110    0        00011124555678889999


Q ss_pred             CCEEEEcc--cCCh------------HHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHHhcccCCC-CCEEEEe
Q 004918          388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  445 (724)
Q Consensus       388 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h  445 (724)
                      ||+||+++  |+++            .+++++.+++.+++++. .|++||++......+......| .|++|++
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            99999999  6666            88999999999998776 4556888877766666665554 7888875

>PLN02712 arogenate dehydrogenase

Probab=98.95  E-value=1.1e-08  Score=118.88  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=104.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F-  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-  385 (724)
                      .+||+|||+|.||.++|..|.+.|++|++||++... +.+.           +.|             +...++.++ + 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence            358999999999999999999999999999998543 2111           111             122334432 3 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHH-hhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCCCC-----Ceee
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE  457 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~~~-----~lve  457 (724)
                      .+||+||.|+|  .....+++.++. +.++++++|++.+|...  ...+...++....|++.||...+...     ....
T Consensus       107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~  184 (667)
T PLN02712        107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF  184 (667)
T ss_pred             cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence            56999999999  677788888875 56788998887665442  23344444444469999997666421     1112


Q ss_pred             Eec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          458 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       458 ii~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      +..     .+....+.++.+.++++.+|..++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            222     222344667888899999999999883

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.94  E-value=5.6e-09  Score=115.77  Aligned_cols=179  Identities=14%  Similarity=0.089  Sum_probs=118.9

Q ss_pred             CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc----CcCCCCEEEEc
Q 004918          319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS----EFKDVDMVIEA  394 (724)
Q Consensus       319 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~~~aDlVIea  394 (724)
                      ||..||.+|+++|++|++|||++++.+...+.          .|.         -..+....+++    .++.+|+||.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK---------GKKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            89999999999999999999999998775321          010         01123344442    23358999999


Q ss_pred             ccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH--HhcccCCCCCEEEEecCCCCCCCCe------eeEecCCCCCH
Q 004918          395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRIIGAHFFSPAHVMPL------LEIVRTERTSA  466 (724)
Q Consensus       395 v~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~~~~~r~ig~h~~~p~~~~~l------veii~~~~t~~  466 (724)
                      ||.+..+ .+++..+.+.+.++.||+..+++.+.+.  ....+..    .|+||+..|..+..      .-+++|.  ++
T Consensus        62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~siM~GG--~~  134 (459)
T PRK09287         62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPSIMPGG--QK  134 (459)
T ss_pred             CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCEEEEeC--CH
Confidence            9977555 4566888899999998886554444332  2222321    15666544422211      1344443  69


Q ss_pred             HHHHHHHHHHHHcCCee-------EEEcCC-Cch---hh-hhhhhHH---HHHHHHHHHc--CCCHHHHHHHHH
Q 004918          467 QVILDLMTVGKIIKKVP-------VVVGNC-TGF---AV-NRAFFPY---SQSARLLVSL--GVDVFRIDSAIR  523 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~-------v~v~d~-pG~---i~-nRl~~~~---~~Ea~~l~~~--Gv~~~~ID~a~~  523 (724)
                      ++++.++++++.++..+       .++++. .|.   ++ |-+.+..   +.|++.+++.  |++++++-.++.
T Consensus       135 ~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~  208 (459)
T PRK09287        135 EAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA  208 (459)
T ss_pred             HHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999999876       788763 222   23 4454433   4599999983  899999988874

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.91  E-value=3.7e-09  Score=103.41  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=73.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh--hcCcccccCcc-Cc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA--LKMLKGVLDYS-EF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~--~~~i~~~~~~~-~~  385 (724)
                      +||+|||+|.+|..+|..|+++||+|+++|++++.++...+..-    ...+.+ + .+-....  -+++.++++.+ ++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~----p~~E~~-l-~~ll~~~~~~~~l~~t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL----PIYEPG-L-DELLKENVSAGRLRATTDIEEAI   74 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS----SS-CTT-H-HHHHHHHHHTTSEEEESEHHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc----cccccc-h-hhhhccccccccchhhhhhhhhh
Confidence            58999999999999999999999999999999998887543210    000000 0 0111111  25778888874 48


Q ss_pred             CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       386 ~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      ++||++|.|||.        |.....++.+.|.+.++++.+|+. -|+.++
T Consensus        75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp  124 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP  124 (185)
T ss_dssp             HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred             hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence            999999999974        455677888999999999888764 444444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.88  E-value=3.2e-09  Score=92.40  Aligned_cols=91  Identities=21%  Similarity=0.223  Sum_probs=69.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC---CcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ||+|||+|.||.+|+..|.++|   ++|+++ +++++++++..++.          +           ..+...+..+.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------~-----------~~~~~~~~~~~~   59 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------G-----------VQATADDNEEAA   59 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------T-----------TEEESEEHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------c-----------cccccCChHHhh
Confidence            7999999999999999999999   899966 99999987754311          0           011111334678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +++|+||.|||  ++...+++.++ ....++.+++|.+.
T Consensus        60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred             ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence            89999999999  88888999999 66677888887654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.87  E-value=1.8e-08  Score=108.69  Aligned_cols=176  Identities=14%  Similarity=0.078  Sum_probs=111.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .++||+|||+|.||+.+|..|+++| +|++|.++++..+...+...+  ......+.       ....++..+++. +++
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a~   75 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEAA   75 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHHH
Confidence            4578999999999999999999999 799999999887765432100  00000010       011345566676 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH------H-HHhcccCCCCCEE-EEecCCCCC---CCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------N-IVGEKTSSQDRII-GAHFFSPAH---VMP  454 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~------~-~~~~~~~~~~r~i-g~h~~~p~~---~~~  454 (724)
                      +++|+||.|||  ....+++++++.+++++++++++.+.++..      + .+.+.++. .++. -..|..+..   ..+
T Consensus        76 ~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~~  152 (341)
T PRK12439         76 NCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGYA  152 (341)
T ss_pred             hcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCCC
Confidence            89999999999  888999999999999998877776666664      2 33333322 2221 111211111   111


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhh
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl  497 (724)
                      ...++..  .+++..+.+..++..-+..+....|..|...--.
T Consensus       153 t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~a  193 (341)
T PRK12439        153 AAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGA  193 (341)
T ss_pred             eEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHH
Confidence            1112222  2677778888888877777776677666544333

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.82  E-value=1.7e-08  Score=91.72  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      .||+|||+|.+|..++..|.++||+|..+ .|+++..+++...+                      ......+..+.+.+
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~   68 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD   68 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence            58999999999999999999999998775 78877666543211                      11222223366789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhh--CCCCcEEEecCCCCCHHHHhcccCCCCCEEEEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  446 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~  446 (724)
                      +|+||.+||++  ...++.++|...  ..++.+|+=.+...+.+-+......-.....+||
T Consensus        69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            99999999965  667889999887  7788887644444555555554444555667775

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.79  E-value=1.3e-08  Score=109.71  Aligned_cols=107  Identities=21%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCCHHH-----HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~-----~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  376 (724)
                      +||+|||+|.||+++|..++++|       ++|.+|.++++.     .+...+..++  .++...-.        ...++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N--~~ylp~~~--------Lp~ni   81 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHEN--VKYLPGIK--------LPDNI   81 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCC--cccCCCCc--------CCCce
Confidence            58999999999999999999998       899999999863     3332211111  01111111        23567


Q ss_pred             ccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHh--hCCCCcEEEecCCCCC
Q 004918          377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTID  427 (724)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~  427 (724)
                      ..++|+ +++++||+||.+||  ++..+++++++.+  .++++++++|.+.++.
T Consensus        82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe  133 (365)
T PTZ00345         82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGII  133 (365)
T ss_pred             EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence            778887 57899999999999  9999999999998  7777877877666554

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.79  E-value=1.4e-08  Score=108.52  Aligned_cols=108  Identities=20%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004918          310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  376 (724)
                      ||+|||+|.||+++|..++.+|        ++|++|.+     +++..+...+..++ . ++.. + +      ....++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n-~-~ylp-g-i------~Lp~~i   70 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHEN-V-KYLP-G-I------KLPANL   70 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCC-c-cccC-C-C------cCCCCe
Confidence            6999999999999999999999        99999999     44433332211100 0 0000 1 0      012457


Q ss_pred             ccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      .+++|+ +++++||+||.+||  .+..+++++++.++++++.++++.+.++...
T Consensus        71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            778887 56799999999999  8999999999999999888888877766543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.76  E-value=1.7e-07  Score=91.38  Aligned_cols=184  Identities=14%  Similarity=0.126  Sum_probs=124.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----cC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  384 (724)
                      ++|+.||+|.||..++..+.+.||+|+.||+|+++.+.+..           .|             ++..+++    +.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence            37999999999999999999999999999999999887542           22             1111121    34


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCe-------ee
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LE  457 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l-------ve  457 (724)
                      +...-.|-.+||- -++..+++.++.+.+.++-+|+....+.--+.+...-...+  .|+||++--..+-.       .-
T Consensus        57 L~~pr~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~l  133 (300)
T COG1023          57 LSAPRIVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCL  133 (300)
T ss_pred             cCCCcEEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceE
Confidence            5566788899982 23778999999999999999987554433332222111112  27888754322211       11


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCchhh----hhhhhHH---HHHHHHHHHcC---CCHHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFPY---SQSARLLVSLG---VDVFRIDSAI  522 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~pG~i~----nRl~~~~---~~Ea~~l~~~G---v~~~~ID~a~  522 (724)
                      .|.|   ++++++.+.++++.+..   -..++++ ..|..+    |-+=+.+   +.|.+.++++.   ++.++|.+++
T Consensus       134 MiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW  209 (300)
T COG1023         134 MIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW  209 (300)
T ss_pred             EecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            3334   79999999999998765   3345653 445433    5553433   35889999885   3788888887

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.70  E-value=9.7e-08  Score=102.69  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc-CC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-KD  387 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-~~  387 (724)
                      ||+|||+|.||+.+|..|+++|++|++|+|+++.++...+...+ . .+.. +.       .....+..+++.+ .+ .+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~-~-~~~~-~~-------~~~~~i~~~~~~~~~~~~~   71 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN-L-KYLP-TC-------HLPDNISVKSAIDEVLSDN   71 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC-c-ccCC-CC-------cCCCCeEEeCCHHHHHhCC
Confidence            79999999999999999999999999999999877654331000 0 0000 00       0112344555653 44 58


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHh-hCCCCcEEEecCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI  426 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~  426 (724)
                      +|+||.+||  .....++++++.+ ++++++.+++.++++
T Consensus        72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence            999999998  7888899999988 888887666666655

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.69  E-value=7.3e-07  Score=94.95  Aligned_cols=167  Identities=13%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-CcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a  388 (724)
                      ||+|||+|.||..+|..|+++|++|+++++ ++.++...+.   .+  .+....-     + ..-.....++.+ ..+++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~--~~~~~~~-----~-~~~~~~~~~~~~~~~~~~   69 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GL--VIRSDHG-----D-AVVPGPVITDPEELTGPF   69 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---Ce--EEEeCCC-----e-EEecceeecCHHHccCCC
Confidence            799999999999999999999999999999 7666553210   00  0000000     0 000111233443 34899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhcccCCCCCEE-EEecCCCCCCCC-eee------Ee
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-LLE------IV  459 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~i-g~h~~~p~~~~~-lve------ii  459 (724)
                      |+||.|++  .....++++++.+.+.++++|++...++.. ..+...++. .+++ +..++......+ .+.      ++
T Consensus        70 d~vilavk--~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~~  146 (305)
T PRK12921         70 DLVILAVK--AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRLT  146 (305)
T ss_pred             CEEEEEec--ccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcEE
Confidence            99999998  444567888898888888888766666653 344444432 2333 233221111111 011      11


Q ss_pred             cC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          460 RT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       460 ~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      -|  +....+..+.+..++...|..+.+..|...
T Consensus       147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  180 (305)
T PRK12921        147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ  180 (305)
T ss_pred             EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence            11  222345666777788887766665566443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.68  E-value=1.7e-06  Score=92.52  Aligned_cols=177  Identities=8%  Similarity=0.072  Sum_probs=104.3

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +.+||+|||+|.||+.+|..|+++|++|+++.|++.  +....   +.+......+..       ....+...++.+...
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~---~g~~~~~~~~~~-------~~~~~~~~~~~~~~~   71 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRE---NGLQVDSVHGDF-------HLPPVQAYRSAEDMP   71 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHh---CCeEEEeCCCCe-------eecCceEEcchhhcC
Confidence            346899999999999999999999999999999863  22111   000000000100       001122334445577


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-HhcccCCCCCEEE-Eec-----CCCCC---CCC-e
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG-AHF-----FSPAH---VMP-L  455 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~~~~~r~ig-~h~-----~~p~~---~~~-l  455 (724)
                      .+|+||.||+.  ....+++..+.+.+.++++|++...++...+ +...++ ++++++ ..+     ..|..   .+. -
T Consensus        72 ~~D~vilavK~--~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~  148 (313)
T PRK06249         72 PCDWVLVGLKT--TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGR  148 (313)
T ss_pred             CCCEEEEEecC--CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCc
Confidence            89999999983  3335788888888888888877777776543 444443 334443 222     22210   000 0


Q ss_pred             eeEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004918          456 LEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  498 (724)
Q Consensus       456 veii~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~  498 (724)
                      +.+-.....+     .+.++.+..+++..|..+.+..|....+..+++
T Consensus       149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~  196 (313)
T PRK06249        149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV  196 (313)
T ss_pred             EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence            1111111112     466777888888888877776776665555443

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.67  E-value=4.7e-08  Score=103.49  Aligned_cols=122  Identities=18%  Similarity=0.292  Sum_probs=79.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH-HHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK-TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~-~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.||.++|..++..|+ +|+++|++++..+ +.. .+.       +.+     .......+++.++++++++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~-------~~~-----~~~~~~~~i~~t~d~~~~~   68 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMY-------EAS-----PVGGFDTKVTGTNNYADTA   68 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhh-------hhh-----hccCCCcEEEecCCHHHhC
Confidence            489999999999999999999887 8999999876433 221 111       101     0011124677788888899


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEE--ecCCCCCHHHHhcccC-CCCCEEEE
Q 004918          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      +||+||.++.              .|.++.+++.+++.++.+ +++|+  ||........+..... .+.|++|+
T Consensus        69 ~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~  142 (305)
T TIGR01763        69 NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ  142 (305)
T ss_pred             CCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence            9999999997              245677777788888864 44444  4433332223333322 34566665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.63  E-value=5.8e-07  Score=93.85  Aligned_cols=190  Identities=13%  Similarity=0.103  Sum_probs=129.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~  383 (724)
                      ...|+|||+|.||+.+|.+++++|+.|.+|+|+.++.+...+...       + +           .++..+.++    +
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~-------~-~-----------k~i~~~~sieefV~   63 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERA-------K-G-----------KNIVPAYSIEEFVA   63 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCc-------c-C-----------CCccccCcHHHHHH
Confidence            356999999999999999999999999999999999887654211       0 1           234444444    3


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhc--cc-CCCCCEEEEec-------CCCCCCC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE--KT-SSQDRIIGAHF-------FSPAHVM  453 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~--~~-~~~~r~ig~h~-------~~p~~~~  453 (724)
                      .++.---|+.+|--. .....++++|.+++.++-||++...+.-.+.+..  .+ ..--.|+|+-.       .+.|.  
T Consensus        64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS--  140 (473)
T COG0362          64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS--  140 (473)
T ss_pred             HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence            356667788887533 3346788999999999999997554433332222  22 23335666654       23333  


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCe----e--EEEc-CCCchhh----hhhh---hHHHHHHHHHHHcC--CCHHH
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKV----P--VVVG-NCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR  517 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~----~--v~v~-d~pG~i~----nRl~---~~~~~Ea~~l~~~G--v~~~~  517 (724)
                          |+||.  ++++.+.+.+++..+..+    |  .+++ +..|..+    |=+=   +.++.|+..++..|  .+.++
T Consensus       141 ----iMpGG--~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e  214 (473)
T COG0362         141 ----IMPGG--QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE  214 (473)
T ss_pred             ----cCCCC--CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence                44554  799999999999887532    2  2343 5566555    5442   35677999999985  59999


Q ss_pred             HHHHHHhc
Q 004918          518 IDSAIRSF  525 (724)
Q Consensus       518 ID~a~~~~  525 (724)
                      |-.+...+
T Consensus       215 i~~vF~~W  222 (473)
T COG0362         215 IAEVFEEW  222 (473)
T ss_pred             HHHHHHHh
Confidence            99998444

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.62  E-value=3.7e-07  Score=97.17  Aligned_cols=111  Identities=17%  Similarity=0.112  Sum_probs=76.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||+.+|..|+++|++|++++++++..+...+.   .+  ....+.        ....+..+++.+.++++|
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~---g~--~~~~~~--------~~~~~~~~~~~~~~~~~d   68 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN---GL--RLEDGE--------ITVPVLAADDPAELGPQD   68 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc---CC--cccCCc--------eeecccCCCChhHcCCCC
Confidence            79999999999999999999999999999988776654321   00  000110        001122344444458999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhccc
Q 004918          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT  435 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~  435 (724)
                      +||.|++  .....++++++.+.+.++++|++...++.. ..+...+
T Consensus        69 ~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~  113 (304)
T PRK06522         69 LVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI  113 (304)
T ss_pred             EEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence            9999998  444578889999988888877776666653 3344433

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.61  E-value=5.8e-07  Score=88.39  Aligned_cols=113  Identities=12%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ||+|||+ |.||.-++..|.++|+.|++                                                 ++|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~   32 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA   32 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence            7999999 99999999999999999861                                                 368


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCC----eeeEecCCCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP----LLEIVRTERT  464 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~----lveii~~~~t  464 (724)
                      |+||.|+|  .....++++++.      .+|++.+|....  +...   ..+|+|.||...|....    -.-++..+.+
T Consensus        33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~~--i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~   99 (197)
T PRK06444         33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKWP--FKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFINDIS   99 (197)
T ss_pred             CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCHH--HHHh---cCCEEecCCCCCCCcCcccccceEEEECCCC
Confidence            99999999  777677777654      256666665432  2222   34799999976543321    1223346678


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE
Q 004918          465 SAQVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v  486 (724)
                      +++.++.++.+++  |..++.+
T Consensus       100 ~~~~~~~~~~l~~--G~~~~~~  119 (197)
T PRK06444        100 RDNYLNEINEMFR--GYHFVEM  119 (197)
T ss_pred             CHHHHHHHHHHHc--CCEEEEe
Confidence            8888999999998  8777776

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.60  E-value=7.4e-08  Score=100.22  Aligned_cols=97  Identities=30%  Similarity=0.387  Sum_probs=76.1

Q ss_pred             EEEEcC-CCCcHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccC
Q 004918          311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE  384 (724)
Q Consensus       311 I~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~  384 (724)
                      |+|||+ |.||.++|..++..|    .+|+++|+++++++.....+++.....             ...++..++| +++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    799999999988777655544432211             1135666777 588


Q ss_pred             cCCCCEEEE--------------cccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       385 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++||+||+              .+.++.++++++.+++.+++ ++++++.
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~  117 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIV  117 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            999999999              66778889999999999998 5555543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.46  E-value=4.9e-07  Score=96.78  Aligned_cols=100  Identities=15%  Similarity=0.039  Sum_probs=77.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++.....                            +...+++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            479999999999999999999999999999997542110                            1112334 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (724)
                      ||+|+.++|...+....+-+++.+.++++++|++.+.+..+  ..+...+.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            99999999999888888888888999999988766555444  34545443

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.44  E-value=1e-05  Score=79.79  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=96.2

Q ss_pred             cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccCcCCCCEEEEcccCC
Q 004918          320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKDVDMVIEAVIES  398 (724)
Q Consensus       320 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aDlVIeav~e~  398 (724)
                      |+.+|..++.+||+|++.|.|.+-.+...      +++.-+.|             +.. ++|.++++.+.+.|.-.|-.
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~------w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG   93 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH------WKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG   93 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHH------HHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence            88999999999999999999877655431      11111222             333 44558899999999988833


Q ss_pred             hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhc----ccCCCCCEEEEecCCCCCC----CCeeeEecCCCC------
Q 004918          399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTSSQDRIIGAHFFSPAHV----MPLLEIVRTERT------  464 (724)
Q Consensus       399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~----~~~~~~r~ig~h~~~p~~~----~~lveii~~~~t------  464 (724)
                      . ..-.+.++|.++++.+++|+ ||.+.++-.+..    .+..+.+-+|+..+.|..+    ....-++.+..|      
T Consensus        94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA  171 (340)
T COG4007          94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA  171 (340)
T ss_pred             h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence            1 34467788999999999874 666665544433    3334434445444443311    111223443333      


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEc
Q 004918          465 SAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      ++|.++++..+++..||.+.++.
T Consensus       172 TeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         172 TEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             cHHHHHHHHHHHHhcCCceEecC
Confidence            78999999999999999998873

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.43  E-value=3.4e-06  Score=80.88  Aligned_cols=141  Identities=24%  Similarity=0.277  Sum_probs=99.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~  106 (724)
                      .+++.+.+-|.+.++.++++ +++.|+|.=.    |-|+++..                ...++ +.|...++||++.|+
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~   66 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY   66 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence            36778888899999998865 5677777311    12333321                12344 557788999999999


Q ss_pred             ---ccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcch--------hhh------hccccc--HHHHHHHHHcCC
Q 004918          107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGG--------TQR------LPRLVG--LSKAIEMMLLSK  167 (724)
Q Consensus       107 ---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~--------~~~------l~r~~G--~~~a~~l~ltg~  167 (724)
                         |.|..+|.-++++||.+++.++++++....-.|.-+....        +..      +.+.-|  ...+..++....
T Consensus        67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~  146 (172)
T cd07015          67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL  146 (172)
T ss_pred             cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence               9999999999999999999999999988774332110000        011      111223  466778888889


Q ss_pred             CCCHHHHHHCCCcceecCc-chH
Q 004918          168 SITSEEGWKLGLIDAVVTS-EEL  189 (724)
Q Consensus       168 ~i~a~eA~~~Glv~~vv~~-~~l  189 (724)
                      .++++||++.|++|.|+.. ++|
T Consensus       147 ~lta~EA~~~G~iD~ia~~~~~l  169 (172)
T cd07015         147 SLTPEEALKYGVIEVVARDINEL  169 (172)
T ss_pred             CcCHHHHHHcCCceeeeCCHHHH
Confidence            9999999999999999854 444

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.41  E-value=7e-07  Score=83.46  Aligned_cols=101  Identities=24%  Similarity=0.298  Sum_probs=70.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      .||+|||+ |..|..+|..+...+.  +++++|++++.++....++++.......             .......+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence            48999999 9999999999999876  8999999998766655444443221111             112223667999


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       386 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ++||+||.+.-.              +..+.+++..++.++. ++.+++..|
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt  118 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT  118 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence            999999988722              3446667777788887 445554433

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.41  E-value=9.9e-07  Score=94.03  Aligned_cols=85  Identities=13%  Similarity=0.089  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHh---CHHHHHHHHHHHHhhhCC-CCC
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFK  695 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~  695 (724)
                      ++++.||++.++++||+.++++|++ |+++||.++..|+|+|+..-|||++.|..   |++.+......++...++ .+.
T Consensus       186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~  264 (308)
T PRK06129        186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ  264 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC
Confidence            5789999999999999999999999 99999999999999985456999999987   999999999999888875 788


Q ss_pred             CCHHHHHHHH
Q 004918          696 PSRFLEERAT  705 (724)
Q Consensus       696 p~~~l~~~~k  705 (724)
                      |+|++.++++
T Consensus       265 ~~~~~~~~~~  274 (308)
T PRK06129        265 PVPWDGELVA  274 (308)
T ss_pred             CchhhHHHHH
Confidence            9999998883

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.38  E-value=1.6e-06  Score=82.96  Aligned_cols=130  Identities=17%  Similarity=0.208  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      ++..+.+++.+.|..++.++.++.|+|  .+.|+      ++.                ....++ +.|..+++|+++.+
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~----------------~~~~i~-~~i~~~~~~v~~~~   65 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF----------------AGMAIY-DTIKFIKADVVTII   65 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH----------------HHHHHH-HHHHhcCCCceEEE
Confidence            567889999999999998877777666  34433      221                122445 66788999999999


Q ss_pred             CccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhh------------------hhccc--ccHHHHHHHH
Q 004918          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRL--VGLSKAIEMM  163 (724)
Q Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~------------------~l~r~--~G~~~a~~l~  163 (724)
                      .|.|.++|.-++++||  .|++.++++|.+....-+.   +|...                  .+.+.  .......+++
T Consensus        66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~  142 (162)
T cd07013          66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADL  142 (162)
T ss_pred             EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            9999999999999999  6777777777654332111   11110                  01111  2345566677


Q ss_pred             HcCCCCCHHHHHHCCCccee
Q 004918          164 LLSKSITSEEGWKLGLIDAV  183 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~v  183 (724)
                      -.+..++|+||++.||||++
T Consensus       143 ~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         143 ERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             cCCccccHHHHHHcCCCCcC
Confidence            77888899999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.34  E-value=1.3e-05  Score=82.33  Aligned_cols=165  Identities=15%  Similarity=0.070  Sum_probs=116.3

Q ss_pred             CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHH
Q 004918          332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE  410 (724)
Q Consensus       332 ~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~  410 (724)
                      ++|++++|++++++...+.                      ++ +..+.+. +.+.+||+||.||+  ++...+++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            6899999999886654221                      01 2223333 45688999999999  788889999998


Q ss_pred             hhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcC-
Q 004918          411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN-  488 (724)
Q Consensus       411 ~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-  488 (724)
                      +.+.++.+|+|...+++++++...+....+++.+.|..|...+..+..+ .++..+++..+.+..++..+|+...+-.+ 
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~  144 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEAL  144 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence            8777788999999999999998888655578889998887777666655 56778889999999999999977654211 


Q ss_pred             CCchhh-----hhhhhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004918          489 CTGFAV-----NRAFFPYSQSAR--LLVSLGVDVFRIDSAI  522 (724)
Q Consensus       489 ~pG~i~-----nRl~~~~~~Ea~--~l~~~Gv~~~~ID~a~  522 (724)
                      ...+.+     .-++ .++.|++  ..++.|+++++-.+.+
T Consensus       145 ~~~~talsgsgPA~~-~~~~~al~~~~v~~Gl~~~~A~~lv  184 (245)
T TIGR00112       145 MDAVTALSGSGPAYV-FLFIEALADAGVKQGLPRELALELA  184 (245)
T ss_pred             cchHHhhccCcHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            111111     1111 2222322  3446688888877776

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.33  E-value=8.9e-07  Score=94.18  Aligned_cols=98  Identities=26%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|+++|..|+..|  ++|+++|++++.++.....+.+....... .           ..+. +.++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~-~-----------~~i~-~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPS-P-----------VKIK-AGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCC-C-----------eEEE-cCCHHHhC
Confidence            48999999999999999999999  58999999998876655444332110000 0           0122 34567789


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      +||+||.++..              +..+.+++..++.++++ +++++
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi  114 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL  114 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            99999999853              34456777778888776 44444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.33  E-value=4.1e-07  Score=94.61  Aligned_cols=170  Identities=16%  Similarity=0.117  Sum_probs=130.2

Q ss_pred             CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004918           13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (724)
Q Consensus        13 ~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (724)
                      .+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. +.|++|.|..++....... .......+++++ 
T Consensus        65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii-  141 (380)
T KOG1683|consen   65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII-  141 (380)
T ss_pred             cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH-
Confidence            478888887 889999999999999999999999889999998877 6799999998876532221 111223355666 


Q ss_pred             HHHhcCCCcEEEEECccccchh--HHHHhhcCEEEEe--CCceeeCcccccC-ccCCcchhhhhcccccHHHHHHHHHcC
Q 004918           92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLS  166 (724)
Q Consensus        92 ~~l~~~~kp~Iaav~G~a~GgG--~~lalacD~ria~--~~a~f~~pe~~~G-~~P~~g~~~~l~r~~G~~~a~~l~ltg  166 (724)
                      ....+++.|+.+++||++--|+  +-++.+|+||+..  ..-..+..+..++ ..|.+-. -.+...+|...+-.-+-.+
T Consensus       142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~i-D~~~t~fGf~~g~~~L~d~  220 (380)
T KOG1683|consen  142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLI-DSLITKFGFRVGERALADG  220 (380)
T ss_pred             HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHH-HHHHHhcCccccHHHHhhc
Confidence            5689999999999999999998  8899999999998  4434467777777 3444432 2233334555555556778


Q ss_pred             CCCCHHHHHHCCCcceecCc
Q 004918          167 KSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       167 ~~i~a~eA~~~Glv~~vv~~  186 (724)
                      .-++..||++-|+++.+.|.
T Consensus       221 ~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  221 VGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCccHHHHHhhccchhccch
Confidence            88999999999999999984

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.30  E-value=1.3e-06  Score=86.49  Aligned_cols=104  Identities=19%  Similarity=0.264  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--  382 (724)
                      .||+|||+|.||+.+|..|++.|+ +++++|.+   ++.+.+-..       ....-|+...+.+...+.++....+.  
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-------~~~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-------KASQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-------ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            579999999999999999999999 69999998   555443110       00112222223333344443332222  


Q ss_pred             -----------cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       383 -----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                                 +.++++|+||+| .++.+.+..++.++....+...+++
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                       236789999999 6899999999999988877766665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK10949 protease 4; Provisional

Probab=98.29  E-value=5.6e-06  Score=95.08  Aligned_cols=162  Identities=20%  Similarity=0.230  Sum_probs=104.5

Q ss_pred             cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004918           12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (724)
Q Consensus        12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (724)
                      ++.|++|+++.+    +  .+.++.   +.+.+.|+.+..|++||+|||+=..+    |+....             .+.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~  384 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV  384 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence            567999998654    1  233443   56788899999999999999974321    221110             011


Q ss_pred             HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccc------------ccCccCCcchhhhh---
Q 004918           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQRL---  150 (724)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~P~~g~~~~l---  150 (724)
                      ..+.+ ..++...|||||.+.+.|.-||.-++++||.++|.+.+..|.-.+            ++|+-+..-.+-.+   
T Consensus       385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~  463 (618)
T PRK10949        385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV  463 (618)
T ss_pred             HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence            22333 335667899999999999999999999999999998766554332            24433221111000   


Q ss_pred             -------------------------------cccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHH
Q 004918          151 -------------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (724)
Q Consensus       151 -------------------------------~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (724)
                                                     .|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus       464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~  538 (618)
T PRK10949        464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE  538 (618)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence                                           111222222 22568999999999999999999765555444444

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.28  E-value=5.2e-06  Score=77.53  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||.|..|.+.|.+|...|++|++..+... ..+++.           +.|             +...+-.|+++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence            6899999999999999999999999999998876 333332           222             222333377899


Q ss_pred             CCEEEEcccCChHHHHHHH-HHHHhhCCCCcEEEecCCCCCH
Q 004918          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      +|+|+..+|  .+.-.++| ++|.+.++++.++.- +.++.+
T Consensus        61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni   99 (165)
T PF07991_consen   61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI   99 (165)
T ss_dssp             -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred             CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence            999999999  66667888 789999999998753 344433

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.21  E-value=3.1e-06  Score=88.26  Aligned_cols=86  Identities=17%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|||.|.||.++|.+|...|++|+++++.....+.+.           ..|             ....+-.+.++.|
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~A   72 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRTA   72 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhcC
Confidence            6899999999999999999999999999987643322211           111             1112222678899


Q ss_pred             CEEEEcccCChHHHHHHH-HHHHhhCCCCcEEE
Q 004918          389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILA  420 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~  420 (724)
                      |+|+.++|. .+. +.++ +++.+.++++++++
T Consensus        73 DVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~  103 (335)
T PRK13403         73 QVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL  103 (335)
T ss_pred             CEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence            999999996 444 4565 56889999999775

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.20  E-value=9e-06  Score=80.57  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (724)
                      ..++..+...+...|..++.++..+-|.|  .+.|      +|+.                ....++ +.|...+.|+++
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t   94 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST   94 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence            35788899999999998886644343333  3433      2221                123445 567788899999


Q ss_pred             EECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchh------------------hhhcccc--cHHHHHH
Q 004918          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLV--GLSKAIE  161 (724)
Q Consensus       104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~------------------~~l~r~~--G~~~a~~  161 (724)
                      .+.|.|.+.|..++++++  .|++.++++|.+....-|.   +|-+                  ..+...-  ......+
T Consensus        95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~  171 (200)
T PRK00277         95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK  171 (200)
T ss_pred             EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999743  5666666666554432111   1111                  1112222  3355666


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCc
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      ++-.+..++|+||++.||||+|+..
T Consensus       172 ~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        172 DTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HhhCCccccHHHHHHcCCccEEeec
Confidence            7778889999999999999999854

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.20  E-value=3e-06  Score=89.94  Aligned_cols=98  Identities=23%  Similarity=0.266  Sum_probs=68.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .||+|||+|.+|.++|..++..|.  +++++|++++.++....++.+.....             ....+..++++++++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-------------~~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-------------KNPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-------------CCCEEEECCCHHHhC
Confidence            499999999999999999998886  79999999877655443333321000             002455567888899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEE
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL  419 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii  419 (724)
                      +||+||.+.-.              +..+.+++.+++.++.+...+|
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi  117 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL  117 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            99999987621              3335666677788886554433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.20  E-value=5.6e-06  Score=88.92  Aligned_cols=101  Identities=15%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|++|++||++++.... .           ..+             ... .++ +.+++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence            68999999999999999999999999999998653211 0           001             111 233 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhccc
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT  435 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~  435 (724)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+.+-.+  ..+...+
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL  254 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL  254 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence            99999999988887777667788889999988754444333  3444444

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.17  E-value=1.2e-05  Score=85.63  Aligned_cols=176  Identities=11%  Similarity=-0.002  Sum_probs=99.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||+|.||+-+|..|+++|++|++++|+.+.+++..+.  +.+. ....|...       .-.+.. .+.+....+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~-------~~~~~~-~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS-------LYAIPA-ETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce-------eeccCC-CCccccccc
Confidence            479999999999999999999999999999998776654321  0000 00011100       001111 112335688


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEE-EEecCCCCCCCCe-e------eEe
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFFSPAHVMPL-L------EIV  459 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~i-g~h~~~p~~~~~l-v------eii  459 (724)
                      |+||.|+-  ..-..+.++.+.+++.++++|++.-.++... .+...+.. ++++ |..++......|. +      .+.
T Consensus        72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~  148 (305)
T PRK05708         72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTW  148 (305)
T ss_pred             CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence            99999984  3344577888999999999888777776654 34444432 2333 3333221111111 0      111


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhh
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF  499 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~  499 (724)
                      -|.. +.+..+.+.+++..-|....+..|..+.+.+.+++
T Consensus       149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~  187 (305)
T PRK05708        149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL  187 (305)
T ss_pred             EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            1211 12334555556666565554445555555555543

>PRK15076 alpha-galactosidase; Provisional

Probab=98.16  E-value=6.3e-06  Score=91.30  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             cceEEEEcCCCCcHHHHH--HHH----HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      |.||+|||+|.||.+.+.  .++    ..|.+|+++|+++++++.+...++..+...   +         ...++..++|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD   68 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD   68 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence            368999999999966655  333    246799999999999886555454443322   1         1135777888


Q ss_pred             c-cCcCCCCEEEEccc
Q 004918          382 Y-SEFKDVDMVIEAVI  396 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~  396 (724)
                      . +++++||+||+++-
T Consensus        69 ~~eal~dADfVv~ti~   84 (431)
T PRK15076         69 RREALQGADYVINAIQ   84 (431)
T ss_pred             HHHHhCCCCEEeEeee
Confidence            4 88999999999883

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.16  E-value=0.00016  Score=76.73  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=100.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|+|+|.||+-++..|+++|++|+++.|++. +++..+           .|..-.............+.+.+.+..+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence            4899999999999999999999988999888876 555432           1211000000000112223334667799


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-HhcccCCCCCEEEEecCCCCCCCCeeeEecC------
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT------  461 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~~~~~r~ig~h~~~p~~~~~lveii~~------  461 (724)
                      |+||.++-  .-...+.++.+.+.++++++|++.-.++...+ +........-+.|+-+.......+..-...+      
T Consensus        69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            99999984  55566888999999999998887777766655 3333333222444444333323222211111      


Q ss_pred             -C--CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          462 -E--RTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       462 -~--~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                       .  .-.++.++.+.+.++.-|-...+..+
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d  176 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPD  176 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence             1  11336677777777766666555443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.14  E-value=3.2e-06  Score=89.93  Aligned_cols=96  Identities=24%  Similarity=0.345  Sum_probs=67.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ||+|||+|.+|.++|..++..|  .+|+++|++++.++.....+...       ......      ..+ .+++++++++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~~------~~i-~~~d~~~l~~   67 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVKP------VRI-YAGDYADCKG   67 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccCC------eEE-eeCCHHHhCC
Confidence            7999999999999999999999  58999999988765322222111       000000      112 2467788999


Q ss_pred             CCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEE
Q 004918          388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL  419 (724)
Q Consensus       388 aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii  419 (724)
                      ||+||.+++.              +..+.+++.+++.++.+.+.++
T Consensus        68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            9999999964              3445667777888887665444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=98.13  E-value=4.4e-06  Score=89.75  Aligned_cols=98  Identities=27%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++....++.+.....   +         . ..+..+.++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~---~---------~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL---P---------R-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC---C---------C-CEEEeCCCHHHhC
Confidence            599999999999999999998887  79999999887665444443321100   0         0 1344445788899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEE
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL  419 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii  419 (724)
                      +||+||.+.-.              +..+.+++..++.+++++..+|
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi  151 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL  151 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            99999988621              3345667777788876555433

>PRK07574 formate dehydrogenase; Provisional

Probab=98.10  E-value=2.5e-05  Score=84.95  Aligned_cols=104  Identities=11%  Similarity=0.023  Sum_probs=73.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|.+|+.||++....+...           ..+             +....++ +.++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence            5899999999999999999999999999999863211100           001             1112234 56799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (724)
                      ||+|+.++|.+.+...-+=++....++++++|+..+.+-.+  ..+.+.+.
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~  299 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE  299 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence            99999999988887665556788889999988754444333  34444443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.10  E-value=2.8e-05  Score=82.13  Aligned_cols=134  Identities=11%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|++|+.||++...                 .+. .           ....++ +.++.
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence            78999999999999999888889999999997421                 000 0           001233 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCC-CCCEEEEecC--CCC---CCCCeeeEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFF--SPA---HVMPLLEIV  459 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~-~~r~ig~h~~--~p~---~~~~lveii  459 (724)
                      ||+|+.++|.+.+...-+-++....++++++++..+.+-  ....+...+.. .....++-.|  .|.   +..+.+-+.
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT  253 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS  253 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence            999999999888876666567777889999887443333  33355555542 2333444333  222   234556677


Q ss_pred             cC-C-CCCHHHHHH
Q 004918          460 RT-E-RTSAQVILD  471 (724)
Q Consensus       460 ~~-~-~t~~e~~~~  471 (724)
                      |+ . .++++..+.
T Consensus       254 PHi~g~~t~e~~~~  267 (303)
T PRK06436        254 PHVAGGMSGEIMQP  267 (303)
T ss_pred             CccccccCHHHHHH
Confidence            76 2 245554443

>PLN03139 formate dehydrogenase; Provisional

Probab=98.08  E-value=2.8e-05  Score=84.41  Aligned_cols=129  Identities=14%  Similarity=0.087  Sum_probs=84.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|.+|..||++....+...           +.|             +....++ +.+++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence            6899999999999999999999999999998753211100           001             1222344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecCC--C------CCCCCee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--P------AHVMPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~--p------~~~~~lv  456 (724)
                      ||+|+.++|.+.+.+.-+-+++...++++++|+..+-+-.+  ..+.+.+. ..-...++--|.  |      -+.++-+
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv  335 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH  335 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence            99999999988887776667788889999988744434333  34444443 222333444332  2      2344556


Q ss_pred             eEecC
Q 004918          457 EIVRT  461 (724)
Q Consensus       457 eii~~  461 (724)
                      -+.|+
T Consensus       336 ilTPH  340 (386)
T PLN03139        336 AMTPH  340 (386)
T ss_pred             EEccc
Confidence            66664

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.08  E-value=6.3e-06  Score=87.76  Aligned_cols=97  Identities=24%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|..+|..++..|.  +++++|++++.++....++.+..... . .           ..+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence            599999999999999999999998  89999999888766554444332110 0 0           1232 46678899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      +||+||.+.-.              +..+.+++..++.++.+. ++++
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~vi  119 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIFL  119 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence            99999987632              344566667777777654 4443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.07  E-value=5.6e-06  Score=87.69  Aligned_cols=97  Identities=24%  Similarity=0.334  Sum_probs=69.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      |+|||+|.+|+++|..++..|  .+++++|++++.++....++.+.....   .          ..++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence            689999999999999999998  589999999988776555444332110   0          0134445667899999


Q ss_pred             CEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       389 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      |+||.++.-              +..+.+++..++.+++ ++++++.
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv  113 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILV  113 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            999999842              3446677778888888 4555543

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.05  E-value=3.5e-05  Score=81.89  Aligned_cols=102  Identities=11%  Similarity=0.071  Sum_probs=74.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|++|+.||++.+.....                          .......++ +.+++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence            689999999999999999999999999999876431100                          000011233 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|.+.+...-+-++....++++++++...-+  +.-..+...+.
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~  241 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD  241 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence            99999999999988777777788889999988643333  33345555554

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.04  E-value=7e-06  Score=88.18  Aligned_cols=93  Identities=16%  Similarity=0.046  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||.++|..++ ..|.+|+.||+++.....                           ..+...+++ +.++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---------------------------~~~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---------------------------TYVDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---------------------------hhccccCCHHHHHH
Confidence            58999999999999999995 468899999998653210                           001122344 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      +||+|+.++|.......-+=.++.+.++++++|+..+.+..+
T Consensus       200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~v  241 (332)
T PRK08605        200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLV  241 (332)
T ss_pred             hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCccc
Confidence            999999999977666542224567778999988755555444

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.03  E-value=7.1e-06  Score=78.02  Aligned_cols=106  Identities=11%  Similarity=0.038  Sum_probs=66.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|+|+|.||.+++..+++.| ++|+++|++++..+...+.+..       .. +          .....+..+.+++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~   81 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE   81 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence            68999999999999999999986 7899999999887664432211       00 0          0111122244789


Q ss_pred             CCEEEEcccCChH-HHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcc
Q 004918          388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEK  434 (724)
Q Consensus       388 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~  434 (724)
                      +|+||.|+|.+.. .....+.  ...+++++++++.++....+.+...
T Consensus        82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~  127 (155)
T cd01065          82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE  127 (155)
T ss_pred             CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH
Confidence            9999999996653 1111111  1235778877755444332344333

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.01  E-value=1.3e-05  Score=82.74  Aligned_cols=112  Identities=20%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC--CC-----cEEEEeCCHHHHHH--HHHHHHHH---HHhhHhcCCCCHHHHHHhhc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLK--GIKTIEAN---VRGLVTRGKLTQDKANNALK  374 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~--~~~~i~~~---~~~~~~~g~~~~~~~~~~~~  374 (724)
                      .-.||+|||+|+||++||..+.++  ++     +|..|-+.++.-.+  -+.++-+.   .-+++..-.        ...
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~--------lP~   91 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK--------LPE   91 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc--------CCC
Confidence            347899999999999999998765  22     68888766554332  11111111   112222222        235


Q ss_pred             CcccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       375 ~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      ++.+++|+ +++.|||++|-++|  .+....++++|..++++++..+|.+.++..
T Consensus        92 NvvAv~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~  144 (372)
T KOG2711|consen   92 NVVAVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV  144 (372)
T ss_pred             CeEecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence            67788888 78899999999999  999999999999999999998887776553

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.01  E-value=4.9e-05  Score=75.74  Aligned_cols=136  Identities=20%  Similarity=0.212  Sum_probs=97.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (724)
                      ..++..+..++...|..+++++..+.|.|  .+.|      +++.                ....++ +.|..++.|+++
T Consensus        42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t   98 (207)
T PRK12553         42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVT----------------AGDAIY-DTIQFIRPDVQT   98 (207)
T ss_pred             ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHH----------------HHHHHH-HHHHhcCCCcEE
Confidence            45889999999999999987654444444  4433      3321                122445 667888899999


Q ss_pred             EECccccchhHHHHhhcC--EEEEeCCceeeCccccc-CccCCcchh------------------hhhcccc--cHHHHH
Q 004918          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLV--GLSKAI  160 (724)
Q Consensus       104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~-G~~P~~g~~------------------~~l~r~~--G~~~a~  160 (724)
                      .+.|.|.+.|.-++++||  .|++.++|+|.+..... |.  ..|-.                  ..+.+.-  ......
T Consensus        99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~  176 (207)
T PRK12553         99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR  176 (207)
T ss_pred             EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999  59999999998876643 21  12211                  1112222  345666


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCc
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +++-.+..++|+||++.||||+|+..
T Consensus       177 ~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        177 KDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHhcCccccHHHHHHcCCccEEcCc
Confidence            77778999999999999999999853

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.01  E-value=3.1e-05  Score=74.91  Aligned_cols=131  Identities=21%  Similarity=0.259  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      ++.....++...+..+..++..+.|+|  .+.|+      |+.                ....++ +.|..++.|+++.+
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~----------------~~~~i~-~~l~~~~~~v~t~~   74 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVT----------------AGLAIY-DTMQYIKPPVSTIC   74 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEEE
Confidence            678889999999999998766555555  34333      321                122344 55777899999999


Q ss_pred             CccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhh-----------------hccc--ccHHHHHHHHH
Q 004918          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR-----------------LPRL--VGLSKAIEMML  164 (724)
Q Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~-----------------l~r~--~G~~~a~~l~l  164 (724)
                      .|.|.++|.-++++||  .|++.++++|.+.+...+.. +. ....                 +...  .......+++-
T Consensus        75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~-g~-~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG-GQ-ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            9999999999999999  89999999999888765532 21 1100                 1111  23346667777


Q ss_pred             cCCCCCHHHHHHCCCccee
Q 004918          165 LSKSITSEEGWKLGLIDAV  183 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~v  183 (724)
                      .+..++++||+++|+||+|
T Consensus       153 ~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         153 RDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CCccccHHHHHHcCCCccC
Confidence            8999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.97  E-value=1.3e-05  Score=83.85  Aligned_cols=102  Identities=26%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|+++|..|+..+.  +++++|++++.++.-..++.+......            ...++..+.++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~------------~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG------------SDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc------------CceEEecCCChhhhc
Confidence            489999999999999999977754  899999996654432222222111000            002233334589999


Q ss_pred             CCCEEEEcc--c------------CChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          387 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       387 ~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ++|+|+.+.  |            .|..+.+++-+++.+.++ +.++...|
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt  118 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT  118 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec
Confidence            999999887  3            255677788888888887 44444333

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.96  E-value=1.6e-05  Score=84.26  Aligned_cols=99  Identities=17%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ||+|||+|.+|.++|..++..|.  +++++|++++.++....++.+....... .          --++. +.+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~-~----------~~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYS-T----------NTKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCC-C----------CEEEE-ECCHHHhCC
Confidence            79999999999999999999887  7999999988765543333322110000 0          01233 467899999


Q ss_pred             CCEEEEcccC------C----------hHHHHHHHHHHHhhCCCCcEEEe
Q 004918          388 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       388 aDlVIeav~e------~----------~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ||+||.+.-.      +          ..+.+++..++.++.+ +++++.
T Consensus        69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~iv  117 (307)
T cd05290          69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIIL  117 (307)
T ss_pred             CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence            9999988721      1          2344555566777774 555543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.95  E-value=3e-05  Score=73.34  Aligned_cols=111  Identities=17%  Similarity=0.142  Sum_probs=72.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHhhcCcccccCc-cCcCCC
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKDV  388 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (724)
                      |+|+|+|.||.-+|..|+++|++|+++++++ .++...+           .|. ++...-+..........+. +....+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPDGDETVQPPIVISAPSADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecccceecccccccCcchhccCCC
Confidence            7899999999999999999999999999998 6555321           110 0000000000000011111 245789


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-Hhccc
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKT  435 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~  435 (724)
                      |+||.|+.  ..-..++++.+.+++.+++.|++...++...+ +.+..
T Consensus        69 D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   69 DLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             SEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             cEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence            99999996  44556788889999999987877777777544 44444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.88  E-value=2e-05  Score=83.83  Aligned_cols=123  Identities=22%  Similarity=0.238  Sum_probs=76.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      +||+|+|+ |..|..++..++..|+  +|+++|+++  +.++.....+..   .+...+         ...++..+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d---~~~~~~---------~~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYD---ALAAAG---------IDAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhh---chhccC---------CCcEEEECCCHH
Confidence            48999998 9999999999999987  499999965  333332222211   111111         001355566788


Q ss_pred             CcCCCCEEEEcccC------C--------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH--HhcccC-CCCCEEEE
Q 004918          384 EFKDVDMVIEAVIE------S--------VPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTS-SQDRIIGA  444 (724)
Q Consensus       384 ~~~~aDlVIeav~e------~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~~-~~~r~ig~  444 (724)
                      ++++||+||.++.-      +        .++.+++...+.+.++ +++++..++..++-.  +..... .+.+++|+
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence            89999999999841      1        1446666677888775 556666666554432  222222 23456664

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00022  Score=73.34  Aligned_cols=151  Identities=13%  Similarity=0.027  Sum_probs=103.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (724)
                      .+|||||.|.||.=+|..+.++||.|..+||++-  +.+.+.+        ..+.               .+++  .+-+
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~y--------g~~~---------------ft~lhdlcer  107 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEKY--------GSAK---------------FTLLHDLCER  107 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHHh--------cccc---------------cccHHHHHhc
Confidence            5799999999999999999999999999999872  2222111        1111               1122  1235


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCC-C------CCee
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------MPLL  456 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~-~------~~lv  456 (724)
                      ..|+|+.|+.  ......+++..-.. ++.+++++..+|...  .+.....++..-.++..|++..|. .      .|+|
T Consensus       108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV  185 (480)
T KOG2380|consen  108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV  185 (480)
T ss_pred             CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence            7899999996  55555555554433 567899988777644  344555566666789999976554 1      1444


Q ss_pred             eEe---cCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004918          457 EIV---RTERTSAQVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       457 eii---~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (724)
                      -+-   ......+|..+....++...|...|.+
T Consensus       186 ydkvRig~~~~r~ercE~fleIf~cegckmVem  218 (480)
T KOG2380|consen  186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM  218 (480)
T ss_pred             EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence            331   123346899999999999999988877

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.86  E-value=7.5e-05  Score=85.26  Aligned_cols=103  Identities=16%  Similarity=0.032  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|++|+.||+.... +...           +.+             +...+++ +.+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence            68999999999999999999999999999985321 1100           011             1122344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (724)
                      ||+|+.++|.+.+.+.-+=++..+.++++++++..+-+-.  -..+.+.+.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  244 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE  244 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence            9999999998877665544566678899998864444433  345555554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.82  E-value=0.00039  Score=71.11  Aligned_cols=138  Identities=16%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -.++++-.+.....++.+... .+-+|-|.=.++.+. |.+-+          ..-......+.+ ..+....+|+|++|
T Consensus        77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI  143 (256)
T PRK12319         77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII  143 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            467788888888888888754 455666643333442 33211          011122333444 45778899999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      -|.|.|||......||+++|.+++.|+.      +.|.++.+..+...--...+.+.+    .+++.++.+.|+||+|+|
T Consensus       144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~  213 (256)
T PRK12319        144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP  213 (256)
T ss_pred             eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence            9999999888888999999999988774      223333333332211112233333    779999999999999996


Q ss_pred             c
Q 004918          186 S  186 (724)
Q Consensus       186 ~  186 (724)
                      +
T Consensus       214 e  214 (256)
T PRK12319        214 E  214 (256)
T ss_pred             C
Confidence            4

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.82  E-value=1.2e-05  Score=78.40  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++........           .             .... ..++ +.++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~~-~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGVE-YVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTEE-ESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccce-eeehhhhcch
Confidence            6899999999999999999999999999999988644110           0             0111 2244 55788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+...-+=++....++++++|+...-+  +.-+.+.+.+.
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            99999999977765554445677788999988754444  33344555554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05442 malate dehydrogenase; Provisional

Probab=97.78  E-value=3.4e-05  Score=82.28  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=68.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  377 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  377 (724)
                      ..||+|||+ |.+|+++|..++..|.       +++++|++++  .++....++.+....... .           -.+.
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~   71 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA-G-----------VVIT   71 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC-C-----------cEEe
Confidence            359999998 9999999999988765       7999999653  233222222221100000 0           1122


Q ss_pred             cccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       378 ~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                       +.+++++++||+||.+.-              .+..+.+++..++.++.+++++++..|..
T Consensus        72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP  132 (326)
T PRK05442         72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP  132 (326)
T ss_pred             -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence             456799999999998762              13456677778888888777777655543

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.78  E-value=0.00017  Score=71.25  Aligned_cols=138  Identities=20%  Similarity=0.206  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .+++.+...+.+.|..++..+..+.|.|  .+.|      +++.                ....++ +.|..++.||++.
T Consensus        31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------ag~aI~-d~i~~~~~~V~t~   87 (197)
T PRK14512         31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDID----------------AGFAIF-NMIRFVKPKVFTI   87 (197)
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence            4778889999999988876333343333  3433      3321                122455 6678899999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhhh------------------hcccc--cHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLV--GLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~~------------------l~r~~--G~~~a~~l  162 (724)
                      +.|.|.+.|.-++++||-  |++.++++|..-...-++.   |.+.-                  +...-  ......++
T Consensus        88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~  164 (197)
T PRK14512         88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKD  164 (197)
T ss_pred             EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh
Confidence            999999999999999985  8999999887655432221   11110                  11111  23455666


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc-chHH
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS-EELL  190 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~-~~l~  190 (724)
                      +-....++|+||+++||||+|++. +++.
T Consensus       165 ~~~d~~lta~EA~~yGliD~I~~~~~~l~  193 (197)
T PRK14512        165 TDRDFWLDSSSAVKYGLVFEVVETRLELE  193 (197)
T ss_pred             hhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence            667789999999999999999954 4443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.76  E-value=0.00014  Score=77.32  Aligned_cols=101  Identities=17%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|||||+|.+|+.+|..+..-|.+|..||+ .+......                          .......++ +.++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence            6899999999999999999999999999999 44332110                          011223344 4579


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-C--CCHHHHhcccC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~~~~~~~~~~  436 (724)
                      .||+|+..+|...+.+.-+=++....++++++++ |++ +  +.-..+...+.
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~  248 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALD  248 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHH
Confidence            9999999999888876655566777889999775 555 3  33334555543

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.76  E-value=4.8e-05  Score=81.01  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      -||+|||+ |.+|+++|..+...|.       +++++|+++  +.++.-..++.+....... +           -.+. 
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~-   70 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA-G-----------VVAT-   70 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC-C-----------cEEe-
Confidence            48999998 9999999999998886       799999965  3233322222221100000 0           0122 


Q ss_pred             ccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       379 ~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +.+++++++||+||.+.-              .+..+.+++..++.++++++++++..|.
T Consensus        71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  130 (323)
T TIGR01759        71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN  130 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            456799999999998762              1345677778889998886777765543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.75  E-value=0.0001  Score=84.20  Aligned_cols=128  Identities=13%  Similarity=0.087  Sum_probs=82.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|++|+.||++... +...           ..+             +... ++ +.++.
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence            68999999999999999999999999999986432 1100           011             1112 33 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC-CCCCEEEEecC--CCC-----CCCCeee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF--SPA-----HVMPLLE  457 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~--~p~-----~~~~lve  457 (724)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.  -..+...+. ..-...++..|  .|+     +..+-|.
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            9999999998877665554677788899998874444433  334555543 22233344433  232     3334455


Q ss_pred             EecCC
Q 004918          458 IVRTE  462 (724)
Q Consensus       458 ii~~~  462 (724)
                      +.|+-
T Consensus       275 lTPHi  279 (526)
T PRK13581        275 VTPHL  279 (526)
T ss_pred             EcCcc
Confidence            66643

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.75  E-value=0.00096  Score=71.51  Aligned_cols=138  Identities=16%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      .+++++-.+-....++.++.. .+-+|-|.=.++++ .|.+-++.          .......+.+ ..+....+|+|++|
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            468899999999999888764 45555554333333 33332221          0112233344 45788999999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      -|.+.+||.....+||+++|.+++.++.      +-|.++++..+...--...|.+    .-.++|.++++.|+||+|+|
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~  336 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP  336 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence            9999666654445789999999988763      2244444444443322233333    33899999999999999996


Q ss_pred             c
Q 004918          186 S  186 (724)
Q Consensus       186 ~  186 (724)
                      .
T Consensus       337 E  337 (431)
T PLN03230        337 E  337 (431)
T ss_pred             C
Confidence            3

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.74  E-value=0.00043  Score=68.32  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .+|.++..++...|-.++.++..+-|.+  .+.|+      |+.                ....++ +.|...+.||...
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~Tv   94 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG------SVI----------------SGLAIY-DTMQFVKPDVHTI   94 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEEE
Confidence            5899999999999999886544343333  44443      221                122455 6688899999999


Q ss_pred             ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcch-hh-----------------hhcccc--cHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-TQ-----------------RLPRLV--GLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~-~~-----------------~l~r~~--G~~~a~~l  162 (724)
                      +-|.|.+.|.-|++++|  .|++.++++|.+-....|..  .|- +.                 .+...-  ......++
T Consensus        95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~  172 (200)
T CHL00028         95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED  172 (200)
T ss_pred             EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999  69999999998877655521  121 11                 111111  23455566


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSE  187 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~  187 (724)
                      +-....++|+||+++||||+|+.+.
T Consensus       173 ~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        173 MERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             hhcCccCCHHHHHHcCCCcEEeecC
Confidence            6777889999999999999998543

>PLN02928 oxidoreductase family protein

Probab=97.74  E-value=0.00016  Score=78.16  Aligned_cols=115  Identities=11%  Similarity=0.059  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|.+|+.||++........  ..      .....     ............++ +.++.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~--~~------~~~~~-----~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG--LL------IPNGD-----VDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh--hc------ccccc-----ccccccccCcccCHHHHHhh
Confidence            6899999999999999999999999999999743211100  00      00000     00000000012234 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+...-+=++....++++++|+...-+-.  -..+.+.+.
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~  277 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE  277 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999998877655555677788899998875444433  344555554

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.74  E-value=7.7e-05  Score=82.10  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-
Q 004918          309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  377 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-  377 (724)
                      -||+|||+ |.+|..+|..++..       |+  +++++|++++.++.-.-++++....+              +..+. 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~i  166 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVSI  166 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceEE
Confidence            58999999 99999999999988       66  89999999998776554444332111              12233 


Q ss_pred             cccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          378 GVLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       378 ~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      .+.++++++|||+||.+.-              .|..+.+++.++|.++..++++|+..+.
T Consensus       167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            2467799999999998762              1344666777778886566776665443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.74  E-value=0.0017  Score=70.73  Aligned_cols=185  Identities=12%  Similarity=0.092  Sum_probs=107.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEE------eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLK------EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~------d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      ++|+|||.|.+|...|..+...|++|++-      |.+.+.-+++.           +.|             +...+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence            68999999999999999999999999843      33333333221           112             1222223


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC----------CC
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV  452 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~----------~~  452 (724)
                      ++++.||+|+..+|+.  ....+++++.+.+++++++.- +-+..+.......+..-.++-+-|-.|-          .-
T Consensus        93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G  169 (487)
T PRK05225         93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG  169 (487)
T ss_pred             HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence            6789999999999966  377888999999999998853 2233332221111111223333332221          11


Q ss_pred             CCeeeEecC-CCCCHHHHHHHHHHHHHcCCee--EE-E--c-C-CCchhhhh-hhhHHH-----HHHHHHHHcCCCHHHH
Q 004918          453 MPLLEIVRT-ERTSAQVILDLMTVGKIIKKVP--VV-V--G-N-CTGFAVNR-AFFPYS-----QSARLLVSLGVDVFRI  518 (724)
Q Consensus       453 ~~lveii~~-~~t~~e~~~~~~~l~~~lGk~~--v~-v--~-d-~pG~i~nR-l~~~~~-----~Ea~~l~~~Gv~~~~I  518 (724)
                      .|.+-.|-. ...+..+.+.+..+...+|..-  |. .  . + ..-....| ++...+     ...-.++++|++|+.-
T Consensus       170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A  249 (487)
T PRK05225        170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA  249 (487)
T ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            122222321 3446678999999999999762  22 1  1 1 11222233 222222     2334677889988776


Q ss_pred             HH
Q 004918          519 DS  520 (724)
Q Consensus       519 D~  520 (724)
                      -.
T Consensus       250 ~k  251 (487)
T PRK05225        250 EK  251 (487)
T ss_pred             HH
Confidence            54

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.73  E-value=0.00022  Score=75.90  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=102.4

Q ss_pred             cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004918           14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (724)
Q Consensus        14 ~v~~i~l~~p-~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (724)
                      .|+.|.++.+ .  .+.+..-..+.+.+.++.+..|++++.|||.=.    |-|+....             .....+.+
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l  122 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL  122 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence            5788877655 1  122223346778888999999999999999511    11222110             01122333


Q ss_pred             HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc---------------
Q 004918           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG---------------  155 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G---------------  155 (724)
                       +++..-. ||++.|++.|.-||.-++++||.++|+++|..|--.+-.+. |....   +-...|               
T Consensus       123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~---l~~k~Gv~~~~~~ag~~k~~~  196 (317)
T COG0616         123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEE---LLEKLGVEKEVITAGEYKDIL  196 (317)
T ss_pred             -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHH---HHHhcCCceeeeecccccccc
Confidence             3344444 99999999999999999999999999999988765554442 21110   111111               


Q ss_pred             -----------------------------------HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHH
Q 004918          156 -----------------------------------LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  196 (724)
Q Consensus       156 -----------------------------------~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~  196 (724)
                                                         ......-+.+|+.+++++|++.||||++-..++....+.+.
T Consensus       197 ~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         197 SPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             CcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence                                               11123346689999999999999999998766555544443

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.72  E-value=0.00028  Score=74.51  Aligned_cols=160  Identities=17%  Similarity=0.234  Sum_probs=97.0

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004918           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (724)
Q Consensus        12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (724)
                      .+.|++|.++.+ ..+. ...+.+++.+.+..+..+   ..|||.-..    .|+......             .....+
T Consensus        89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s~-------------~a~~~l  147 (330)
T PRK11778         89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGYG-------------LAASQL  147 (330)
T ss_pred             CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHHH-------------HHHHHH
Confidence            357999999876 2221 123456666666555433   467775321    122221100             011113


Q ss_pred             HHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchh---------------------h-
Q 004918           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT---------------------Q-  148 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~---------------------~-  148 (724)
                       .++....||+++.+++.|.-||.-++++||.++|.+.+.+|.-.+-.. .|.....                     . 
T Consensus       148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf  225 (330)
T PRK11778        148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF  225 (330)
T ss_pred             -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence             346778899999999999999999999999999999888775554322 1111110                     0 


Q ss_pred             ---------hhcccc-------------cH-HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHH
Q 004918          149 ---------RLPRLV-------------GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR  194 (724)
Q Consensus       149 ---------~l~r~~-------------G~-~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~  194 (724)
                               .+...+             ++ ....+-+.+|+.+++++|++.||||++-..+++...+.
T Consensus       226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~  294 (330)
T PRK11778        226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM  294 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence                     000000             00 01123356899999999999999999998777655433

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.72  E-value=4.2e-05  Score=74.95  Aligned_cols=140  Identities=19%  Similarity=0.274  Sum_probs=93.3

Q ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.|+.|    ++.++...+.+.|..+++++..+  .|.|.+.      |+|+..                ...++ +.|.
T Consensus        19 i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~   71 (182)
T PF00574_consen   19 IFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIR   71 (182)
T ss_dssp             EEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHH
T ss_pred             EEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHH
Confidence            445454    88999999999888775333222  2233443      333321                22455 6688


Q ss_pred             cCCCcEEEEECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh----------------hhccc--cc
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ----------------RLPRL--VG  155 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~----------------~l~r~--~G  155 (724)
                      .++.|+++.+.|.|.+.|.-++++||.  |++.+++.|.+-+...+... .....                .+...  ..
T Consensus        72 ~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g-~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~  150 (182)
T PF00574_consen   72 SSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG-NASELREQAKELEKLNERIANIYAERTGLS  150 (182)
T ss_dssp             HSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE-EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             hcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc-ccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            899999999999999999999999999  89999999999888655422 11110                01111  12


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      .....+++-....++|+||+++|+||+|+.
T Consensus       151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  151 KEEIEELMDRDTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred             HHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence            344455555667789999999999999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.71  E-value=0.00086  Score=70.19  Aligned_cols=137  Identities=13%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -.++++-.+.....++.++.. .+-+|-|--.+++++ |.+-.+-          -......+.+ ..+....+|+|++|
T Consensus       133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV  199 (322)
T CHL00198        133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI  199 (322)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            467888999999988888764 455555543333443 4322110          0112222333 44678999999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      -|.|.|||.-....||+++|.+++.|+.      +.|.++++..+..   ..+|.+ +-..-+++|++.++.|+||.|+|
T Consensus       200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~  269 (322)
T CHL00198        200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP  269 (322)
T ss_pred             eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence            9999888865444699999999998874      2344444444333   233333 24456899999999999999996

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00021  Score=71.34  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=113.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      +|++||+|.|..+++..+.+.|.    +++.+-.+......-          ....            +.-.+.++.+.+
T Consensus         2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~------------g~~~~~~n~~~~   59 (267)
T KOG3124|consen    2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEAL------------GVKTVFTNLEVL   59 (267)
T ss_pred             ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcC------------CceeeechHHHH
Confidence            79999999999999999999986    344443322111110          1111            222233445677


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERT  464 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t  464 (724)
                      +.+|+++.++-  +.+...++.++...+..+.||+|..-+..++.+...+..+.|++...+..|..+.....+. .+...
T Consensus        60 ~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~  137 (267)
T KOG3124|consen   60 QASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHA  137 (267)
T ss_pred             hhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCc
Confidence            89999999995  7888888888877667778999999999999999988877899999999999888777744 57777


Q ss_pred             CHHHHHHHHHHHHHcCCee
Q 004918          465 SAQVILDLMTVGKIIKKVP  483 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~  483 (724)
                      ..+..+.+.+++...|+..
T Consensus       138 ~~~D~~l~~~ll~~vG~~~  156 (267)
T KOG3124|consen  138 TNEDLELVEELLSAVGLCE  156 (267)
T ss_pred             chhhHHHHHHHHHhcCcce
Confidence            8888899999999999643

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=7.3e-05  Score=77.89  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=55.3

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||.| .||.+||..|.++|+.|++|++....++                                     +.+++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~  202 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ  202 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence            689999996 9999999999999999999987643211                                     24578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ||+||.|++....+...+       +++++++++.+
T Consensus       203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg  231 (301)
T PRK14194        203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG  231 (301)
T ss_pred             CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence            999999998654443332       78899887644

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.65  E-value=0.00066  Score=69.12  Aligned_cols=201  Identities=18%  Similarity=0.214  Sum_probs=117.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhh-cCcccccCc-c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-KMLKGVLDY-S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~~-~  383 (724)
                      |.||+-||+|..|++....++..  ..+|+++|.+..++.+-...--..    .+.| + .+-+.+.. .++-+++|. .
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpi----yepg-l-devv~~crgknlffstdiek   74 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPI----YEPG-L-DEVVKQCRGKNLFFSTDIEK   74 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcc----cCCC-H-HHHHHHhcCCceeeecchHH
Confidence            46999999999999988777654  458999999998876533210000    0111 0 11111111 356678887 5


Q ss_pred             CcCCCCEEEEcccC-------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEec-
Q 004918          384 EFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHF-  446 (724)
Q Consensus       384 ~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~-  446 (724)
                      +++.+|+|+.+|..             |+.......+.|.+....+.|++ --|+.|+.   .+...+.+...  |+|| 
T Consensus        75 ai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i~fq  151 (481)
T KOG2666|consen   75 AIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GIKFQ  151 (481)
T ss_pred             HhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--CceeE
Confidence            78999999999832             56666777777888877777765 45666654   23233332222  4444 


Q ss_pred             -----------------CCCCCCCCeeeEecCCCCCH--HHHHHHHHHHHHcCC-e-eEEEc----CCCchhhhhhhhH-
Q 004918          447 -----------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIKK-V-PVVVG----NCTGFAVNRAFFP-  500 (724)
Q Consensus       447 -----------------~~p~~~~~lveii~~~~t~~--e~~~~~~~l~~~lGk-~-~v~v~----d~pG~i~nRl~~~-  500 (724)
                                       +||-+     .++.|..|.+  .+++.+..+++.+-. . ++..+    +..-+.+|.++.. 
T Consensus       152 ilsnpeflaegtaikdl~npdr-----vligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqr  226 (481)
T KOG2666|consen  152 ILSNPEFLAEGTAIKDLFNPDR-----VLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQR  226 (481)
T ss_pred             eccChHHhcccchhhhhcCCce-----EEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHH
Confidence                             34433     3777777643  456666677766542 2 22222    2233344444322 


Q ss_pred             --HHHHHHHHHHc-CCCHHHHHHHH
Q 004918          501 --YSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       501 --~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                        -+|....+.|. |.+++++..++
T Consensus       227 issins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  227 ISSINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             HhhhHHHHHHHHhcCCCHHHHHHHh
Confidence              22333333333 88999988876

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.64  E-value=0.0001  Score=78.07  Aligned_cols=116  Identities=17%  Similarity=0.280  Sum_probs=72.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-c-cC--c
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y  382 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~  382 (724)
                      ||+|||+ |.+|+++|..++..|+  +++++|+++ ....+. ++.        ...        ....+.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL~--------~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DLS--------HIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hhh--------cCC--------cCceEEEecCCCchH
Confidence            7999999 9999999999998886  899999987 211111 011        110        0013443 2 23  6


Q ss_pred             cCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HHHHh-cccC-CCCCE
Q 004918          383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVG-EKTS-SQDRI  441 (724)
Q Consensus       383 ~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~~~~-~~~~-~~~r~  441 (724)
                      +++++||+||.+.-              .+..+.+++.+++.++. |+++++..|....     ++... .... .++|+
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rV  141 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKL  141 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhcCCChHHE
Confidence            89999999998762              35567777778888885 5565554444432     33322 2232 34567


Q ss_pred             EEE
Q 004918          442 IGA  444 (724)
Q Consensus       442 ig~  444 (724)
                      +|+
T Consensus       142 iG~  144 (312)
T TIGR01772       142 FGV  144 (312)
T ss_pred             Eee
Confidence            775

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.62  E-value=0.00015  Score=78.71  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=70.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  377 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-  377 (724)
                      -||+|||+ |.+|.++|..++..|.       .++++  |++++.++.-.-++.+....              .+..+. 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i  110 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI  110 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence            48999999 9999999999998875       24445  88888876554444332211              112233 


Q ss_pred             cccCccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       378 ~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      .+.++++++|||+||.+.--              +..+.+++...|.++.+++++++..+.
T Consensus       111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            24567999999999987621              344666777788888878887765443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.61  E-value=0.00064  Score=66.86  Aligned_cols=136  Identities=18%  Similarity=0.153  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++..+...+...|..++.++..+-|+|  .+.      |+|+.                ....++ +.|..++.|+...
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~----------------~g~~I~-d~l~~~~~~v~t~   90 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSIT----------------AGLAIY-DTMQFIKPDVSTI   90 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            3677888888888888887654444444  333      33321                122445 5577777888888


Q ss_pred             ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchh---------------hhhcccc--cHHHHHHHHHc
Q 004918          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLV--GLSKAIEMMLL  165 (724)
Q Consensus       105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~---------------~~l~r~~--G~~~a~~l~lt  165 (724)
                      +-|.|.+.|.-+++++|  .|++.++|+|.+-+..-|......-.               ..+.+.-  ......+++-.
T Consensus        91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~  170 (191)
T TIGR00493        91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER  170 (191)
T ss_pred             EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence            89999999998888765  69999999998876643321111100               0012222  33566677778


Q ss_pred             CCCCCHHHHHHCCCcceecC
Q 004918          166 SKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~  185 (724)
                      +..++|+||+++||||+|+.
T Consensus       171 ~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       171 DFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             CccCcHHHHHHcCCccEEec
Confidence            89999999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.59  E-value=0.00011  Score=77.04  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..|...|.+|++++|+++..+.+.           +.+..          .+. ..++ +.+++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~~----------~~~-~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGLI----------PFP-LNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCCe----------eec-HHHHHHHhcc
Confidence            6899999999999999999999999999999987654421           11100          001 1122 45689


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +|+||.++|...-     -++..+.++++++|++..|
T Consensus       210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence            9999999984311     1234455677777765444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.57  E-value=0.0026  Score=66.62  Aligned_cols=137  Identities=15%  Similarity=0.091  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -+++++-.+-....++.++.- .+-+|-|.-.+++++ |.+-++..          ......+.+ ..+....+|+|++|
T Consensus       130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV  196 (316)
T TIGR00513       130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV  196 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence            467888888888888888754 455666543333333 33322111          112233344 45778899999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      -|.|.|||......||++++.+++.++.      +.|.++.+..+...   .++.+..- -..+++.++.+.|+||.|+|
T Consensus       197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~---~~a~~aae-~~~~ta~~l~~~G~iD~II~  266 (316)
T TIGR00513       197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA---SKAPKAAE-AMKITAPDLKELGLIDSIIP  266 (316)
T ss_pred             ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch---hhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence            9999777775445699999999988763      22443433333321   22222222 36778999999999999996

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.57  E-value=0.00014  Score=76.86  Aligned_cols=97  Identities=19%  Similarity=0.264  Sum_probs=63.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-c-C--c
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D--Y  382 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--~  382 (724)
                      ||+|||+ |.+|+++|..++..|.  +++++|++  .++...-++.+        ..        ....+..+ . +  +
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~--------~~--------~~~~i~~~~~~~~~y   63 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH--------IN--------TPAKVTGYLGPEELK   63 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh--------CC--------CcceEEEecCCCchH
Confidence            8999999 9999999999998885  89999998  22211111111        10        00134432 3 2  6


Q ss_pred             cCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       383 ~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +++++||+||.+.-              .|.++.+++.+.+.++. |+++++..|..
T Consensus        64 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNP  119 (310)
T cd01337          64 KALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNP  119 (310)
T ss_pred             HhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence            99999999998762              24556677777888885 46666544433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.53  E-value=0.00023  Score=67.16  Aligned_cols=98  Identities=23%  Similarity=0.303  Sum_probs=60.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +++.|+|.|..|+++|+.|...|.+|+++|++|-.+-++.           ..|             ....+-.++++.+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence            6799999999999999999999999999999997654432           112             2222222678899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHhcc
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK  434 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~~  434 (724)
                      |++|.+.....-+..+-|    +.+++++|+++.++.   +.+..+...
T Consensus        80 di~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CEEEECCCCccccCHHHH----HHhcCCeEEeccCcCceeEeecccccc
Confidence            999998764433333444    447889998765543   344444443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.53  E-value=8e-05  Score=78.70  Aligned_cols=95  Identities=27%  Similarity=0.329  Sum_probs=64.5

Q ss_pred             EEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004918          313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (724)
Q Consensus       313 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (724)
                      |||+|.+|..+|..++..+.  +++++|++++.++....++.+........            ..+. +.+++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~------------~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTP------------KKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCC------------eEEe-cCCHHHHCCCCE
Confidence            69999999999999998887  79999999887665444443322100000            1222 456799999999


Q ss_pred             EEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       391 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ||.+.-.              +..+.+++..++.++. ++++++.
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~viv  111 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLV  111 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            9987732              3445667777788875 4555543

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=97.52  E-value=0.00011  Score=78.29  Aligned_cols=117  Identities=16%  Similarity=0.297  Sum_probs=71.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccC---
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD---  381 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---  381 (724)
                      .||+|||+ |.+|+.+|..++..+.  +++++|+++  .+.-.-++.+.       .        . ...+.. +.+   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~-------~--------~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI-------N--------T-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC-------C--------c-CceEEEEeCCCCH
Confidence            59999999 9999999999998776  899999987  11100011100       0        0 012221 223   


Q ss_pred             ccCcCCCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HH-HHhcccC-CCCC
Q 004918          382 YSEFKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTSTID-----LN-IVGEKTS-SQDR  440 (724)
Q Consensus       382 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~-~~~~~~~-~~~r  440 (724)
                      ++++++||+||.+.              +.+..+.+++.+.+.++.+ +.+++..|....     ++ .+..... .|.+
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~  159 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPVNSTVPIAAEVLKKAGVYDPKK  159 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHHcCCCCcce
Confidence            47899999999876              2355577777888888874 555543333332     33 2223332 4566


Q ss_pred             EEEE
Q 004918          441 IIGA  444 (724)
Q Consensus       441 ~ig~  444 (724)
                      ++|+
T Consensus       160 viG~  163 (323)
T PLN00106        160 LFGV  163 (323)
T ss_pred             EEEE
Confidence            7765

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.52  E-value=7.5e-05  Score=79.66  Aligned_cols=100  Identities=16%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhc--Cc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML  376 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i  376 (724)
                      .||+|||+ |.+|.++|..++..|.       +++++|++++.  ++...-++.+...              ....  .+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence            48999999 9999999999998887       79999996432  3321111111100              0001  13


Q ss_pred             ccccCccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          377 KGVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       377 ~~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      . +.+++++++||+||.+.--              +..+.+++..++.++.+++++++..|
T Consensus        69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            2 4567999999999987621              34566777788888886566665544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.51  E-value=0.00047  Score=73.36  Aligned_cols=109  Identities=15%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+..-|.+|..||+.....+               .+             +. ..++ +.++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence            6899999999999999999989999999998642100               00             11 1233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCC-CCCEEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  447 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~-~~r~ig~h~~  447 (724)
                      ||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +.-..+.+.+.. +-. .++-.|
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~  258 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL  258 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence            99999999988876655556777888999988744333  333455555542 223 455544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.51  E-value=0.00041  Score=76.58  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|||||.|.+|..+|..+...|.+|+.||+++....                            .......++ +.++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHhh
Confidence            6899999999999999999999999999998642100                            001112244 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +.-..+...+.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            99999999988776655556677788999988643333  33344555554

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.49  E-value=0.0044  Score=65.03  Aligned_cols=137  Identities=18%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -+++++-.+.....++.++.- .+-+|-|.=.+++++ |.+-.+          .-......+.+ ..+....+|+|++|
T Consensus       130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI  196 (319)
T PRK05724        130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV  196 (319)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            467888888888888888754 466666654444443 433221          01122333444 55788999999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      -|.|.|||.-....||+++|.+++.|+       .++.-|.+..|-+-  ..++.+..- -..+++.++.+.|+||+|+|
T Consensus       197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~  266 (319)
T PRK05724        197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP  266 (319)
T ss_pred             eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence            999987777555569999999998876       33333333333332  233433333 56689999999999999996

>cd00704 MDH Malate dehydrogenase

Probab=97.49  E-value=7.2e-05  Score=79.84  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-  378 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-  378 (724)
                      ||+|||+ |.+|+.+|..++..|.       +++++|+++  +.++....++.+...              ........ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence            7999999 9999999999998664       599999987  533221111111100              00011111 


Q ss_pred             ccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       379 ~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ..+++++++||+||.+.-              .+..+.+++..++.++++++++++..|
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            345689999999997762              145567777788888875666665544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.48  E-value=0.0046  Score=70.54  Aligned_cols=138  Identities=12%  Similarity=0.062  Sum_probs=90.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -+++++-++-....++.++.. .+-+|-|-=.+++++ |.+..+..          ......+.+ ..+....+|+|++|
T Consensus       221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV  287 (762)
T PLN03229        221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV  287 (762)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence            467788888888888888754 455555543333333 33322210          112233444 45778999999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      -|.|.|||.-....||+++|.+++.|+.      +-|.++++..+...   .+|.+ +...-.|+|++.+++|+||.|+|
T Consensus       288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp  357 (762)
T PLN03229        288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP  357 (762)
T ss_pred             eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence            9999888877777799999999987663      22444444433332   22222 34456899999999999999997


Q ss_pred             c
Q 004918          186 S  186 (724)
Q Consensus       186 ~  186 (724)
                      .
T Consensus       358 E  358 (762)
T PLN03229        358 E  358 (762)
T ss_pred             C
Confidence            3

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.45  E-value=0.00036  Score=79.29  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCH-HHHHHHHHHHHhh
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGA-NYVYTSLKKWSQL  689 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~-~~~~~~~~~~~~~  689 (724)
                      .++++.||++.++++||+.++++|++ |+++||.++..|+|++...-|||+..|+.|. +.+.+.++.+.+.
T Consensus       183 ~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~  253 (495)
T PRK07531        183 IDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPC  253 (495)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchh
Confidence            47899999999999999999999999 9999999999999987666799999999984 4455555555443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.44  E-value=0.00074  Score=72.16  Aligned_cols=102  Identities=12%  Similarity=0.081  Sum_probs=70.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||.|.+|..+|..+. .-|.+|..||+........            ..+             +... ++ +.++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~~-~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARYC-DLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEec-CHHHHHH
Confidence            68999999999999999987 6789999999874321100            000             1112 33 5578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      .||+|+.++|-+.+...-+=++....++++++++...-+  +.-..+.+.+.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ  251 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            999999999988887665556677888999988643323  33345555554

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.42  E-value=0.0019  Score=64.57  Aligned_cols=133  Identities=17%  Similarity=0.211  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  102 (724)
                      ..+|..+...+...|..++..+   ++.+.| .+.|+...+|                      ..++ +.|...+.||.
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyI-NSpGGsv~aG----------------------laIy-d~m~~~~~~V~  116 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYI-NSPGGSVYAG----------------------LGIY-DTMQFISSDVA  116 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEE-ECCCcchhhH----------------------HHHH-HHHHhcCCCEE
Confidence            3577888888888776666432   333332 4444322221                      2445 66888999999


Q ss_pred             EEECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh-h-----------------hccccc--HHHHH
Q 004918          103 AAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-R-----------------LPRLVG--LSKAI  160 (724)
Q Consensus       103 aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~-~-----------------l~r~~G--~~~a~  160 (724)
                      ..+-|.|.+.|.-|++++|.  |++.++|++.+-...-|..   |-+. .                 +.+.-|  .....
T Consensus       117 tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~  193 (221)
T PRK14514        117 TICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVW  193 (221)
T ss_pred             EEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            99999999999999999996  9999999998776643321   1111 0                 111122  34555


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      +++-....++|+||++.||||+|+.
T Consensus       194 ~~~~rd~wmtA~EA~eyGliD~Vi~  218 (221)
T PRK14514        194 ADSDRDYWMTAQEAKEYGMIDEVLI  218 (221)
T ss_pred             HHhhcCccCCHHHHHHcCCccEEee
Confidence            6677788899999999999999985

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.40  E-value=0.00013  Score=79.17  Aligned_cols=110  Identities=11%  Similarity=0.090  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|||||.|.||+.+|..+...|++|++||+.....+                +            ... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence            6899999999999999999999999999997543210                0            001 1233 45689


Q ss_pred             CCEEEEcccCChH---HHHHHH-HHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecC
Q 004918          388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFF  447 (724)
Q Consensus       388 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~  447 (724)
                      ||+|+.++|-..+   ...-++ ++....++++++++..+-+-.+  ..+.+.+. ......++--|
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~  234 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW  234 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            9999999996553   122333 4566678999988744434333  34444443 22233444433

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.40  E-value=0.0078  Score=62.92  Aligned_cols=162  Identities=14%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004918           12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (724)
Q Consensus        12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (724)
                      ++.-..|.-|++.  .-+++....+.+..+++.+... .+-+|.|.-.|+     +-+.|   .. .. ...+. .....
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE---gi-~s-L~~~a-k~~~a  186 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE---GL-LS-LMQMA-KTSAA  186 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh---hh-hH-HHhHH-HHHHH
Confidence            3334445556664  4799999999999999998765 567777764442     22211   00 00 00111 11122


Q ss_pred             HHHHHhcCCCcEEEEECccccchhH-HHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCC
Q 004918           90 VVNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS  168 (724)
Q Consensus        90 ~~~~l~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~  168 (724)
                      + .++.....|.|+++.|.|+||+. ..++.+|+++|.+++.+++....           .+...+|.    ++  .-+.
T Consensus       187 ~-~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~l--pe~~  248 (292)
T PRK05654        187 L-KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----KL--PEGF  248 (292)
T ss_pred             H-HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----hh--hhhh
Confidence            2 33556789999999999999965 45777999999999888763221           01111110    00  1112


Q ss_pred             CCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc
Q 004918          169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (724)
Q Consensus       169 i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (724)
                      -+++-+.+.|+||.|+++.++.....++.+.+..+
T Consensus       249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~  283 (292)
T PRK05654        249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQ  283 (292)
T ss_pred             cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence            26777789999999999999998888887765444

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.40  E-value=0.00017  Score=76.75  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=59.4

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-
Q 004918          306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-  381 (724)
Q Consensus       306 ~~~~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-  381 (724)
                      .+|+||+|||+ |.+|+.+|..++..+  .+++++|++.  ++.-..++.+..               . .-.+...++ 
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~---------------~-~~~v~~~td~   67 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHID---------------T-PAKVTGYADG   67 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcC---------------c-CceEEEecCC
Confidence            46789999999 999999999999665  5899999932  111000111100               0 012332222 


Q ss_pred             ---ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          382 ---YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       382 ---~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                         ++++++||+||.+.-.              |....+++.+.+.++.. +.+|+.
T Consensus        68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~iviv  123 (321)
T PTZ00325         68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIVGI  123 (321)
T ss_pred             CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence               6889999999988722              22244556666776644 445543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.38  E-value=0.0006  Score=70.92  Aligned_cols=78  Identities=23%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-C
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  384 (724)
                      .||+|||+|.||..++..+.+.  +++ +.++|+++++.+...+.          .+             ....++++ .
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHHH
Confidence            4899999999999999999876  455 56799998876653220          01             12234443 3


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEK  411 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~  411 (724)
                      +.++|+|++|+|  .+...++..++.+
T Consensus        59 l~~~DvVvi~a~--~~~~~~~~~~al~   83 (265)
T PRK13304         59 VEDVDLVVECAS--VNAVEEVVPKSLE   83 (265)
T ss_pred             hcCCCEEEEcCC--hHHHHHHHHHHHH
Confidence            478999999998  5555566655544

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.36  E-value=0.00088  Score=69.87  Aligned_cols=80  Identities=21%  Similarity=0.139  Sum_probs=53.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      +..||+|||+|.||..++..+.+.  +++|+ ++|+++++.+...+.          .+            .....+++ 
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g------------~~~~~~~~e   62 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LR------------RPPPVVPLD   62 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cC------------CCcccCCHH
Confidence            447899999999999999999874  78876 789998875543211          01            11122334 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHH
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELE  410 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~  410 (724)
                      +.+.++|+|++|.|.+.  -.++..+..
T Consensus        63 ell~~~D~Vvi~tp~~~--h~e~~~~aL   88 (271)
T PRK13302         63 QLATHADIVVEAAPASV--LRAIVEPVL   88 (271)
T ss_pred             HHhcCCCEEEECCCcHH--HHHHHHHHH
Confidence            33577999999999443  345544443

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.36  E-value=0.00085  Score=71.64  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+...|.+|+.||+..... .                             .. ..++ +.++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence            689999999999999999998999999999863210 0                             00 0123 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+...-+=++..+.++++++|+...-+-  .-..+...+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR  248 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            999999999888876655567778889999886443333  3345555554

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.35  E-value=0.00043  Score=73.87  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.||..++..+..  .+.+|++|+|++++.++..+.+.+       .+.           .+....+. +++
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av  187 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV  187 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence            679999999999999986654  447899999999988776543321       110           12233444 467


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ++||+||.|.+...    .++..  +.+++++.|...+
T Consensus       188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig  219 (314)
T PRK06141        188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVG  219 (314)
T ss_pred             hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeC
Confidence            89999998887442    22221  3467777654433

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.35  E-value=0.0019  Score=63.53  Aligned_cols=134  Identities=19%  Similarity=0.207  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++.++..++...|..++.++..+-|.+  .+.|+      |+.                ....++ +.|...+.||...
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGG------SVY----------------DGLGIF-DTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEEE
Confidence            4889999999999999986543333333  44333      221                112445 6678889999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh-h-----------------hccccc--HHHHHHH
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-R-----------------LPRLVG--LSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~-~-----------------l~r~~G--~~~a~~l  162 (724)
                      +-|.|.+.|.-|++++|-  |++.++|++..-...-|.   .|-+. .                 +.+.-|  .....++
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~  166 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED  166 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999985  889999998876654332   12110 0                 111112  2445566


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-....++|+||++.||||+|++.
T Consensus       167 ~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        167 TDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             hhcCcCCCHHHHHHcCCCcEEecc
Confidence            667788999999999999999865

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.34  E-value=0.0014  Score=69.80  Aligned_cols=109  Identities=14%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+....  .            ...+                ..++ +.++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence            68999999999999999999889999999975321  0            0000                1133 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  447 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~~  447 (724)
                      ||+|+.++|-..+...-+=++....++++++|+...-+  +.-..+.+.+. ..-...++-.|
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~  260 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL  260 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence            99999999988776655556777788999988643333  33345555554 22233444433

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.32  E-value=0.00074  Score=71.37  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||.|||+|.+|..++..+...|.+|+++|+++++.+.+..           .|..          .+. .+++ +.+++
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~~----------~~~-~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGLS----------PFH-LSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCe----------eec-HHHHHHHhCC
Confidence            68999999999999999999999999999999876544321           1100          000 1122 45678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +|+||.++|..     .+-++..+.++++++|++..+.
T Consensus       211 aDiVI~t~p~~-----~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        211 IDIIFNTIPAL-----VLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CCEEEECCChh-----hhhHHHHHcCCCCcEEEEEccC
Confidence            99999999832     1223445567788888765554

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.31  E-value=0.0034  Score=63.55  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=76.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004918           23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (724)
Q Consensus        23 p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  102 (724)
                      |-.+.++.+..+.+.+++.....+..+ .++|..      -|+++..                ..++. +.|.+++.|++
T Consensus        67 Pi~~~I~i~dse~v~raI~~~~~~~~I-dLii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~  122 (285)
T PF01972_consen   67 PIYRYIDIDDSEFVLRAIREAPKDKPI-DLIIHT------PGGLVDA----------------AEQIA-RALREHPAKVT  122 (285)
T ss_pred             ccceeEcHhhHHHHHHHHHhcCCCCce-EEEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEE
Confidence            334678888999999999888766554 333432      3343321                11334 56788999999


Q ss_pred             EEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcc
Q 004918          103 AAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG  145 (724)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g  145 (724)
                      +.|+..|..+|.-++|+||..+|.+.+.+|--+..+|-.|..+
T Consensus       123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s  165 (285)
T PF01972_consen  123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS  165 (285)
T ss_pred             EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence            9999999999999999999999999999999999999888644

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.30  E-value=0.0017  Score=64.44  Aligned_cols=39  Identities=23%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|+|+|+|.||..+|+.|.+.|++|+++|++++.++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999998876654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.30  E-value=0.0013  Score=72.90  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=74.4

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGGGL-MGSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      .||+|||+|. ....+...|++.     +-+|+++|+++++++....-.++    ..+....+        -++..|+|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~----~~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKR----YVEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCCH
Confidence            3899999987 334455555543     45899999999998774332222    22221111        246778887


Q ss_pred             -cCcCCCCEEEEccc----------------------------------CChHHHHHHHHHHHhhCCCCcEEE--ecCCC
Q 004918          383 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILA--TNTST  425 (724)
Q Consensus       383 -~~~~~aDlVIeav~----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~--s~ts~  425 (724)
                       +++++||+||.++-                                  -+..+..++.+++.+++ |+++++  ||...
T Consensus        69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~d  147 (425)
T cd05197          69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAG  147 (425)
T ss_pred             HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHH
Confidence             78999999998762                                  13446778888888887 455554  34333


Q ss_pred             CCHHHHhcccCCCCCEEEE
Q 004918          426 IDLNIVGEKTSSQDRIIGA  444 (724)
Q Consensus       426 ~~~~~~~~~~~~~~r~ig~  444 (724)
                      +....+... ....|++|+
T Consensus       148 i~t~a~~~~-~p~~rviG~  165 (425)
T cd05197         148 EVTEAVRRY-VPPEKAVGL  165 (425)
T ss_pred             HHHHHHHHh-CCCCcEEEE
Confidence            222222222 223466664

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.29  E-value=0.002  Score=62.40  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             eEEEEcCCCCcHHHHHH-HHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          310 KVAVIGGGLMGSGIATA-HILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~-la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      ||+|||+|..-.+.-.. ....     +-+++++|+|+++++....-.+...+..   + .        .-++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~---~-~--------~~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA---G-A--------DLKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC---T-T--------SSEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEeCCHH
Confidence            79999999987774322 2222     3489999999999887654444332211   1 1        1246678888 


Q ss_pred             cCcCCCCEEEEcc
Q 004918          383 SEFKDVDMVIEAV  395 (724)
Q Consensus       383 ~~~~~aDlVIeav  395 (724)
                      +++++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            7899999999886

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.29  E-value=0.00064  Score=65.96  Aligned_cols=95  Identities=21%  Similarity=0.287  Sum_probs=59.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC----
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----  381 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----  381 (724)
                      ||.|||+|.+|+.++..|++.|. +++++|.+.   +.+.+-.-     ..  -+-|+-..+.+...+.++....+    
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~   73 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FL--SQIGEPKVEALKENLREINPFVKIEAI   73 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            68999999999999999999999 599999886   33221110     00  01122222222222222221111    


Q ss_pred             --------c-cCcCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004918          382 --------Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA  412 (724)
Q Consensus       382 --------~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~  412 (724)
                              . +.++++|+||+| .++.+.+..+.......
T Consensus        74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                    1 346889999999 56888887787776665

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.28  E-value=0.00024  Score=65.88  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=52.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      -++|.|||+|-||++++..|+..|.+ |++++|+.+++++..+.+        ....+          .....++. +.+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence            37899999999999999999999986 999999999877754432        00000          01112222 456


Q ss_pred             CCCCEEEEcccCCh
Q 004918          386 KDVDMVIEAVIESV  399 (724)
Q Consensus       386 ~~aDlVIeav~e~~  399 (724)
                      .++|+||.|+|-..
T Consensus        74 ~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QEADIVINATPSGM   87 (135)
T ss_dssp             HTESEEEE-SSTTS
T ss_pred             hhCCeEEEecCCCC
Confidence            78999999997543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.28  E-value=0.00054  Score=71.64  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=54.5

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      ++|+||| .|.||.+||..|.++|++|++|+ ++++. +                                     +.++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~  200 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR  200 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence            7899999 99999999999999999999995 66421 1                                     2356


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      .||+||.|++....+...       ++++++++++.+.
T Consensus       201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi  231 (296)
T PRK14188        201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI  231 (296)
T ss_pred             cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence            899999999855433322       2788998876543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.27  E-value=0.01  Score=61.71  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=100.1

Q ss_pred             CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004918           13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (724)
Q Consensus        13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (724)
                      +.-..|.-+++.  .-+++....+.+..+++.+... .+-+|.|+..|+.     -+.|-.     .....+.+ ....+
T Consensus       119 G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak-~~~~~  186 (285)
T TIGR00515       119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAK-TSAAL  186 (285)
T ss_pred             CEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHH-HHHHH
Confidence            333344445554  4789999999999999988754 5677777654442     111100     00111111 11222


Q ss_pred             HHHHhcCCCcEEEEECccccchhH-HHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC
Q 004918           91 VNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI  169 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i  169 (724)
                       .++.....|.|+++-|+|.||+. ..++.+|+++|.+++.+++....+           +...+|.      -+.-+--
T Consensus       187 -~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e------~lpe~~q  248 (285)
T TIGR00515       187 -AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVRE------KLPEGFQ  248 (285)
T ss_pred             -HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcC------ccchhcC
Confidence             33566789999999999999965 456799999999999888733321           1111110      0111122


Q ss_pred             CHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004918          170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      +++-+.+.|+||.|+++.++.+...++..-+.
T Consensus       249 ~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~  280 (285)
T TIGR00515       249 TSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQ  280 (285)
T ss_pred             CHHHHHhCCCCcEEECcHHHHHHHHHHHHHHh
Confidence            56668899999999999999888877776543

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.24  E-value=0.0033  Score=62.01  Aligned_cols=135  Identities=19%  Similarity=0.301  Sum_probs=94.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCC---ceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDD---VKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~---v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  102 (724)
                      ..++.++...+...|-.++.++.   +.+.| .+.|+      |+.                .+..++ +.|...+-||.
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~I-NSpGG------~v~----------------~GlaIy-d~m~~~~~~V~   89 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYI-NCPGG------EVY----------------AGLAIY-DTMRYIKAPVS   89 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEE-ECCCC------chh----------------hHHHHH-HHHHhcCCCEE
Confidence            35888888888888888876433   33332 44433      321                122455 66888999999


Q ss_pred             EEECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcch-hhh-----------------hccccc--HHHHH
Q 004918          103 AAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-TQR-----------------LPRLVG--LSKAI  160 (724)
Q Consensus       103 aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~-~~~-----------------l~r~~G--~~~a~  160 (724)
                      ..+.|.|.+.|.-|++++|-  |++.++|++-+....-|.   .|. ...                 +.+.-|  .....
T Consensus        90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~  166 (201)
T PRK14513         90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL  166 (201)
T ss_pred             EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            99999999999999999995  999999999887765443   221 111                 111122  34555


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcc
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSE  187 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~  187 (724)
                      +++-....++|+||++.||||+|+++.
T Consensus       167 ~~~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        167 RDMERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             HHhccCcccCHHHHHHcCCCcEEeccC
Confidence            666677889999999999999998653

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.24  E-value=0.0013  Score=65.95  Aligned_cols=105  Identities=25%  Similarity=0.338  Sum_probs=71.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ..||.|||.|..|.+.|..+..+|.  +++++|.++++++...-.+++..             .--...++....|+..-
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s-------------~f~~~~~V~~~~Dy~~s   86 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGS-------------AFLSTPNVVASKDYSVS   86 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccc-------------ccccCCceEecCccccc
Confidence            5799999999999999999999887  89999999998765332222110             00112467777889999


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004918          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI  426 (724)
Q Consensus       386 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (724)
                      +++++||..+--              +.++.+.++.++.++ +|++++...+...
T Consensus        87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPV  140 (332)
T KOG1495|consen   87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPV  140 (332)
T ss_pred             CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCch
Confidence            999999987631              333444555555555 5666665444333

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.23  E-value=0.00069  Score=72.38  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (724)
                      ||+|||+ |.+|+.+|..++..|.       +++++|++++.  ++.-..++.+..             . .....+..+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~-------------~-~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCA-------------F-PLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhccc-------------c-hhcCceecc
Confidence            6999999 9999999999998655       59999996543  221111111100             0 011223333


Q ss_pred             -cCccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          380 -LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       380 -~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                       .+++++++||+||.+.--              +..+.+++..++.++.+++++++..|.
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence             347899999999987621              333566677778888766776665443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.16  E-value=0.00035  Score=75.77  Aligned_cols=110  Identities=14%  Similarity=0.082  Sum_probs=69.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|||||.|.||+.+|..+...|.+|.+||+....  .               +           .... ..++ +.++.
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence            68999999999999999999999999999964321  0               0           0001 1234 45689


Q ss_pred             CCEEEEcccCChH----HHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC-CCCCEEEEecC
Q 004918          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF  447 (724)
Q Consensus       388 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~-~~~r~ig~h~~  447 (724)
                      ||+|+..+|-..+    ...-+=++....++++++++..+-+-  .-..+.+.+. .+....++-.|
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~  234 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVW  234 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence            9999999985543    22222245666788999887433333  3334544443 23333444433

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.15  E-value=0.0011  Score=62.88  Aligned_cols=102  Identities=27%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             HhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccc------------cCcc---------CCcc-----hh
Q 004918           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVI---------PGFG-----GT  147 (724)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~---------P~~g-----~~  147 (724)
                      ..+..|||+|.++|.|..++.-|+.+||-+++.+.+.++..-+.            +|+-         ...+     .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35689999999999999999999999999999998887765554            3321         1111     00


Q ss_pred             ----hhhcccc-----------------cHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHH
Q 004918          148 ----QRLPRLV-----------------GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  196 (724)
Q Consensus       148 ----~~l~r~~-----------------G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~  196 (724)
                          ..+.+.+                 ... ..+-+..|..+++++|++.||||++-..+++.+.+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence                0000000                 111 11225789999999999999999999888777665543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK04148 hypothetical protein; Provisional

Probab=97.12  E-value=0.0042  Score=56.86  Aligned_cols=94  Identities=16%  Similarity=0.096  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||.+||+| -|..+|..|++.|++|+..|+++++++.+.+...    ..+             .+.+ +..+.+.-+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~----~~v-------------~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGL----NAF-------------VDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC----eEE-------------ECcC-CCCCHHHHhcC
Confidence            589999999 8999999999999999999999998776543210    000             0011 12334556899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      |+|...=|  +.-.+.-+-++.+.+..+.+|..-+
T Consensus        79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            99999887  4445555667777777787775433

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.12  E-value=0.0012  Score=70.53  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||..++..+...| .+|+++||++++.+...+.+          |.           .....++. +.+.
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~  237 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN  237 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence            68999999999999999998865 68999999998765543221          10           00001112 4567


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhC-CCCcEEEecC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT  423 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~ii~s~t  423 (724)
                      ++|+||.|++.+..  ..++..+.... ..+.+++..+
T Consensus       238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence            89999999985443  34444432222 2345665443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.12  E-value=0.0017  Score=71.78  Aligned_cols=121  Identities=24%  Similarity=0.291  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       309 ~kI~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      .||+|||+|..-+ .+...+++.     +-+|+++|++ +++++....-.+..    .+....+        -++..|+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~----~~~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRM----VKKAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCC
Confidence            4899999998643 444555542     3589999999 78876643333322    2221110        24667778


Q ss_pred             c-cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEE--ecCC
Q 004918          382 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILA--TNTS  424 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts  424 (724)
                      . +++.+||+||.++--                                  +..+..++.+++.++++ +++++  ||..
T Consensus        69 ~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~lin~TNP~  147 (419)
T cd05296          69 RREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWLINFTNPA  147 (419)
T ss_pred             HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEEEEecCHH
Confidence            7 789999999988621                                  11466678888888875 55554  4444


Q ss_pred             CCCHHHHhcccCCCCCEEEE
Q 004918          425 TIDLNIVGEKTSSQDRIIGA  444 (724)
Q Consensus       425 ~~~~~~~~~~~~~~~r~ig~  444 (724)
                      .+....+....  +.|++|+
T Consensus       148 ~ivt~a~~k~~--~~rviGl  165 (419)
T cd05296         148 GIVTEAVLRHT--GDRVIGL  165 (419)
T ss_pred             HHHHHHHHHhc--cCCEEee
Confidence            33222232222  5566664

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.10  E-value=0.012  Score=59.60  Aligned_cols=142  Identities=16%  Similarity=0.158  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH--HHHhcCCCcEEE
Q 004918           27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIVA  103 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~-~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~kp~Ia  103 (724)
                      .++.+-...+...+... +++..+-+|.|.=.+ .|-.|..-++..          +.....+++.  ....+.+.|+|+
T Consensus        44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~aE~~G----------~~~a~A~l~~a~a~a~~~~vP~Is  112 (238)
T TIGR03134        44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRREELLG----------INQALAHLAKALALARLAGHPVIG  112 (238)
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCEEE
Confidence            68877778888888774 555677777765433 244443322221          1122222220  224456699999


Q ss_pred             EECccccchhH-HHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcC--CCCCHHHHHHCCCc
Q 004918          104 AVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI  180 (724)
Q Consensus       104 av~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg--~~i~a~eA~~~Glv  180 (724)
                      .|-|.++|||+ .+.+.+|.++|.+++.++       .++.-+++..+-+-.  ..+.++.-+-  ...++..+.++|+|
T Consensus       113 vI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v  183 (238)
T TIGR03134       113 LIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV  183 (238)
T ss_pred             EEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence            99999998875 555558888877666554       555555544444333  3444443332  34677889999999


Q ss_pred             ceecCcch
Q 004918          181 DAVVTSEE  188 (724)
Q Consensus       181 ~~vv~~~~  188 (724)
                      |.|+++.+
T Consensus       184 d~vi~~~~  191 (238)
T TIGR03134       184 HALLDVAD  191 (238)
T ss_pred             cEEeCCCC
Confidence            99997654

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.013  Score=61.08  Aligned_cols=194  Identities=14%  Similarity=0.116  Sum_probs=121.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc----c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~  383 (724)
                      ...|+.||++.||..++.+.+.+|+.|.+|+|+..+++....+-.+        |           ..|....++    .
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~-----------~~i~ga~S~ed~v~   66 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G-----------TKIIGAYSLEDFVS   66 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C-----------CcccCCCCHHHHHH
Confidence            4579999999999999999999999999999999998876543211        1           012222333    2


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-CCC-HHHHhcc-cCCCCCEEEEecC---CCCCCCCeee
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TID-LNIVGEK-TSSQDRIIGAHFF---SPAHVMPLLE  457 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~~~-~~~~~~~-~~~~~r~ig~h~~---~p~~~~~lve  457 (724)
                      -++.--.||..|--.. ....++++|.+++.++-||++... .++ ...-... ...---|+|+-.-   ..++.+|  .
T Consensus        67 klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S  143 (487)
T KOG2653|consen   67 KLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S  143 (487)
T ss_pred             hcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence            3456677777664222 344677899999999888886332 222 2211111 1222235555431   1112222  1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe-----e--EEEcC-CCchhh----hhhh---hHHHHHHHHHHHc--CCCHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKV-----P--VVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS  520 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~-----~--v~v~d-~pG~i~----nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~  520 (724)
                      ++||.  ++++...+++++..+...     |  .++++ ..|..+    |-+=   +.++.|+..+++.  |++-.+|-.
T Consensus       144 lMpGg--~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~  221 (487)
T KOG2653|consen  144 LMPGG--SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE  221 (487)
T ss_pred             cCCCC--ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            44554  788888888888766322     2  44554 345433    4442   3677899999988  578889988


Q ss_pred             HHHhc
Q 004918          521 AIRSF  525 (724)
Q Consensus       521 a~~~~  525 (724)
                      +...+
T Consensus       222 vF~~W  226 (487)
T KOG2653|consen  222 VFDDW  226 (487)
T ss_pred             HHHhh
Confidence            87433

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.07  E-value=0.0077  Score=61.74  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      -+||+|||.|.-|.+-|.+|..+|.+|++--|.... -+++           .+.|             ...-+-.++++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dG-------------f~V~~v~ea~k   73 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDG-------------FKVYTVEEAAK   73 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcC-------------CEeecHHHHhh
Confidence            369999999999999999999999998776554433 2222           2222             22233337889


Q ss_pred             CCCEEEEcccCChHHHHHHHH-HHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~  420 (724)
                      .+|+|+.-+|  ...-.++++ +|.+.++.+..+.
T Consensus        74 ~ADvim~L~P--De~q~~vy~~~I~p~Lk~G~aL~  106 (338)
T COG0059          74 RADVVMILLP--DEQQKEVYEKEIAPNLKEGAALG  106 (338)
T ss_pred             cCCEEEEeCc--hhhHHHHHHHHhhhhhcCCceEE
Confidence            9999999999  455568887 7999999998764

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.06  E-value=0.058  Score=55.76  Aligned_cols=139  Identities=15%  Similarity=0.213  Sum_probs=81.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004918           25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d----~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (724)
                      --++....-+.+..+++.+..|    ..+-+|.|.-.|+     +-+.+-..    . ...+.+ .+..+ ..+... .|
T Consensus        72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-vP  138 (274)
T TIGR03133        72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANA----G-LIAIAE-IMRAI-LDARAA-VP  138 (274)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence            3678888888888888888752    1234666643332     23322100    0 001111 11122 124444 99


Q ss_pred             EEEEECcc--ccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH--HHHHHHHHcCCCCCHHHHHH
Q 004918          101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK  176 (724)
Q Consensus       101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~--~~a~~l~ltg~~i~a~eA~~  176 (724)
                      +|+++-|.  |+||+..++.+||++||++++++++.-.           ..+....|.  -...+--|.-+.+.++....
T Consensus       139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~  207 (274)
T TIGR03133       139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL  207 (274)
T ss_pred             EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence            99999999  8999999999999999999888776211           111111221  11222223334455667788


Q ss_pred             CCCcceecCcc
Q 004918          177 LGLIDAVVTSE  187 (724)
Q Consensus       177 ~Glv~~vv~~~  187 (724)
                      .|++|.+++++
T Consensus       208 sG~~D~~v~dd  218 (274)
T TIGR03133       208 SGDADVLVEDD  218 (274)
T ss_pred             cccceEEeCCH
Confidence            99999999764

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.04  E-value=0.0011  Score=70.62  Aligned_cols=90  Identities=18%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +++||||.|.+|..+|+.+.--|.+|..||+++.. +.. +           .            ......+..+.++.|
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~-~-----------~------------~~~~y~~l~ell~~s  201 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAE-K-----------E------------LGARYVDLDELLAES  201 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHH-h-----------h------------cCceeccHHHHHHhC
Confidence            78999999999999999999778899999998741 110 0           0            012222222568999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      |+|+..+|-..+...-+=++..+.++++++|+ ||+
T Consensus       202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-Nta  236 (324)
T COG1052         202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTA  236 (324)
T ss_pred             CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECC
Confidence            99999999888877666677888899998875 555

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.04  E-value=0.0015  Score=70.01  Aligned_cols=93  Identities=10%  Similarity=-0.006  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.||...+..+..  ...+|.+||+++++.+...+++++       .|           -.+...++. +++
T Consensus       129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~eav  190 (325)
T TIGR02371       129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREAV  190 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHHh
Confidence            679999999999997766644  356899999999998776543321       11           012333444 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ++||+||.|+|....+    +.  .+.+++++.|.+..|.
T Consensus       191 ~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       191 EGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGAD  224 (325)
T ss_pred             ccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence            9999999999854322    21  2345788776554443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.04  E-value=0.0046  Score=65.28  Aligned_cols=104  Identities=13%  Similarity=-0.004  Sum_probs=66.7

Q ss_pred             CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHhhcCcccccCccCcCCCCEEEEccc
Q 004918          318 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI  396 (724)
Q Consensus       318 ~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~  396 (724)
                      .||+.+|..|+++|++|++++|+ +..+...+           .|. +....-......+..+++.+.+.++|+||.|+.
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~-----------~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK   68 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQ-----------EGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK   68 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHH-----------CCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence            37999999999999999999997 44444321           110 000000000002333455555779999999997


Q ss_pred             CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-Hhccc
Q 004918          397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKT  435 (724)
Q Consensus       397 e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~  435 (724)
                        ..-..++++.+.+++.++++|++...++...+ +...+
T Consensus        69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~  106 (293)
T TIGR00745        69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELL  106 (293)
T ss_pred             --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHh
Confidence              34456788899999999898887666765443 44433

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00098  Score=71.99  Aligned_cols=79  Identities=27%  Similarity=0.232  Sum_probs=54.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      |+||.|||+|.+|+.+|..|+++| .+|++.||+.++++++......    .++.-.++..+          ...+ +.+
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d----------~~al~~li   66 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAAD----------VDALVALI   66 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccC----------hHHHHHHH
Confidence            578999999999999999999999 8999999999998887543211    00100011000          0011 457


Q ss_pred             CCCCEEEEcccCChH
Q 004918          386 KDVDMVIEAVIESVP  400 (724)
Q Consensus       386 ~~aDlVIeav~e~~~  400 (724)
                      ++.|+||.|+|....
T Consensus        67 ~~~d~VIn~~p~~~~   81 (389)
T COG1748          67 KDFDLVINAAPPFVD   81 (389)
T ss_pred             hcCCEEEEeCCchhh
Confidence            888999999994433

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.02  E-value=0.0024  Score=70.13  Aligned_cols=86  Identities=19%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+..           .|.             ......+.++++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence            68999999999999999999999999999999988666432           121             000111446789


Q ss_pred             CEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecC
Q 004918          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT  423 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~t  423 (724)
                      |+||+|....     .++. .....++++.+++...
T Consensus       259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence            9999997522     2232 3456678888776433

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0012  Score=68.40  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||. |.||.++|..|.++|+.|++|....+                                      ++ +.++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            68999999 99999999999999999999932211                                      11 3467


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +||+||.|++....+..+       .+++++++++.+
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg  230 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG  230 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence            899999999855444333       278899887644

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.99  E-value=0.0017  Score=71.47  Aligned_cols=87  Identities=22%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             ....+-.+.++++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~~l~eal~~a  268 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVMTMEEAAELG  268 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEecCHHHHHhCC
Confidence            68999999999999999999999999999999877543311           11             0001111446789


Q ss_pred             CEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecCC
Q 004918          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS  424 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~ts  424 (724)
                      |+||+|+.. .    .++. +....++++++++....
T Consensus       269 DVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        269 DIFVTATGN-K----DVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence            999998742 2    2333 45667889988865443

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.99  E-value=0.0019  Score=70.68  Aligned_cols=86  Identities=23%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             ...+..+.++++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a  251 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG  251 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence            6899999999999999999999999999999987643321           1121             101111456789


Q ss_pred             CEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecC
Q 004918          389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT  423 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~t  423 (724)
                      |+||++...     ..++. +....++++++|+..+
T Consensus       252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEEC
Confidence            999998752     23332 3556788898886433

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02306 hydroxypyruvate reductase

Probab=96.97  E-value=0.0014  Score=71.56  Aligned_cols=117  Identities=17%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||.|.+|..+|..+. .-|.+|..||+.... .+........   .....+...        .......++ +.+
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~~--------~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccccc--------ccccccCCHHHHH
Confidence            68999999999999999986 679999999987642 1110000000   000000000        011122345 557


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      +.||+|+.++|-+.+...-+=++..+.++++++|+...-+  +.-..+.+.+.
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~  287 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK  287 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999999987776665556777889999988743333  33334545543

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.94  E-value=0.0044  Score=68.78  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      +||+|||+|.. +..+...+++.     +-+|+++|+++++++....-.+    +..+....+        -++..|+|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence            48999999874 22344445433     4589999999999877433222    223221111        257778887


Q ss_pred             -cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004918          383 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       383 -~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                       +++++||+||.++--                                  +..+..++.+++++++ |+++++
T Consensus        69 ~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~li  140 (437)
T cd05298          69 EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWIL  140 (437)
T ss_pred             HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEE
Confidence             889999999987621                                  2235667788888887 455554

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.93  E-value=0.007  Score=61.79  Aligned_cols=76  Identities=14%  Similarity=0.060  Sum_probs=52.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      .||+|||+|.||..++..+.+.+   ++ +.+++++++..+...                         +.....+++++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence            68999999999999999987643   44 445788776544421                         11223445544


Q ss_pred             --cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004918          385 --FKDVDMVIEAVIESVPLKQKIFSELEK  411 (724)
Q Consensus       385 --~~~aDlVIeav~e~~~~k~~v~~~l~~  411 (724)
                        ...+|+|+||..  .+..++.-..+..
T Consensus        58 ll~~~~DlVVE~A~--~~av~e~~~~iL~   84 (267)
T PRK13301         58 LLAWRPDLVVEAAG--QQAIAEHAEGCLT   84 (267)
T ss_pred             HhhcCCCEEEECCC--HHHHHHHHHHHHh
Confidence              378999999998  7776666665544

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.88  E-value=0.0016  Score=65.28  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      .+|.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999999999999999999998 59999988

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=96.87  E-value=0.064  Score=55.74  Aligned_cols=140  Identities=17%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .-++....-+.+..+++.+... .+-+|+++..|+     +-+++=..    . ...+.+.. ..+.+....-..|.|++
T Consensus       146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~----s-L~qmak~s-aa~~~~~~~~~vP~Isv  213 (296)
T CHL00174        146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSL----S-LMQMAKIS-SALYDYQSNKKLFYISI  213 (296)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccch----h-hhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence            4788999999999999988765 456777764433     22221000    0 11111111 11212122467999999


Q ss_pred             ECccccchhHHH-HhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCC-----CCHHHHHHCC
Q 004918          105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG  178 (724)
Q Consensus       105 v~G~a~GgG~~l-alacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~-----i~a~eA~~~G  178 (724)
                      +.|+|.||+... ++.||++|+.+++.+++.-..               .     ...  .+|+.     -+|+-.++.|
T Consensus       214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr---------------V-----Ie~--t~ge~lpe~fq~ae~l~~~G  271 (296)
T CHL00174        214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR---------------V-----IEQ--TLNKTVPEGSQAAEYLFDKG  271 (296)
T ss_pred             EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH---------------H-----HHH--hcCCcCCcccccHHHHHhCc
Confidence            999999998755 667999999888877653221               1     000  11222     2577788999


Q ss_pred             CcceecCcchHHHHHHHHHH
Q 004918          179 LIDAVVTSEELLKVSRLWAL  198 (724)
Q Consensus       179 lv~~vv~~~~l~~~a~~~a~  198 (724)
                      +||.||+..++.+....+..
T Consensus       272 ~vD~iV~r~~lr~~l~~ll~  291 (296)
T CHL00174        272 LFDLIVPRNLLKGVLSELFQ  291 (296)
T ss_pred             CceEEEcHHHHHHHHHHHHH
Confidence            99999999998877666553

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.83  E-value=0.016  Score=68.43  Aligned_cols=102  Identities=8%  Similarity=0.046  Sum_probs=78.7

Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCC-CCCEEEEecCCCCC------------CCCe
Q 004918          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL  455 (724)
Q Consensus       391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~~p~~------------~~~l  455 (724)
                      ||.|+|  +....++++++.++++++++|++.+|+..  +..+...+.. ..+|+|.||.....            .+..
T Consensus         1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            688999  99999999999999999999987777643  3444444432 35799999975552            4456


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAV  494 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~  494 (724)
                      +.+++.+.++++.++.++++++.+|.+++.+. +.+-.++
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~  118 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVF  118 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence            77889999999999999999999999998883 3444333

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.83  E-value=0.0024  Score=67.02  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|.|||+|.+|++++..|+..|. +|+++||+.++++...+.+....      ..          ..+....+. +.++
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            689999999999999999999998 79999999998877654432210      00          001111222 3567


Q ss_pred             CCCEEEEccc
Q 004918          387 DVDMVIEAVI  396 (724)
Q Consensus       387 ~aDlVIeav~  396 (724)
                      ++|+||.|+|
T Consensus       192 ~aDiVInaTp  201 (284)
T PRK12549        192 AADGLVHATP  201 (284)
T ss_pred             CCCEEEECCc
Confidence            8999999987

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.82  E-value=0.014  Score=60.74  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc-
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  385 (724)
                      -||++||+|.||+.|+...++ .|++|+.+ |++.+.+.++.++....-...++....+.-...-..+++..|+|.+.+ 
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~   97 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII   97 (438)
T ss_pred             eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence            379999999999999987764 59987664 899888777765421111111111111211122223566677776543 


Q ss_pred             --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-----CCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE
Q 004918          386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI  458 (724)
Q Consensus       386 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-----~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei  458 (724)
                        ...|+||++.--..--.+-.+..+   .....++..|.-     +..+.+.+...       |+-            .
T Consensus        98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gvi------------y  155 (438)
T COG4091          98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQADAA-------GVI------------Y  155 (438)
T ss_pred             cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHHhhc-------CeE------------E
Confidence              456889998742222222333333   334455654432     22222222221       222            2


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      ..+....|...-.+.+|.+++|..++.++-
T Consensus       156 S~~~GDeP~~~mEL~efa~a~G~evv~aGK  185 (438)
T COG4091         156 SGGAGDEPSSCMELYEFASALGFEVVSAGK  185 (438)
T ss_pred             eccCCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence            234455788888899999999999999853

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.80  E-value=0.0019  Score=69.16  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHH-HhhcCcc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK  377 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~  377 (724)
                      -||+|+|+ |.+|+.++..|+..+       .+|+++|+++..  ++...-++.               +.. .....+.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~   67 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQ---------------DCAFPLLKSVV   67 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehh---------------hccccccCCce
Confidence            37999999 999999999998854       589999997531  221000000               000 0112333


Q ss_pred             cccC-ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          378 GVLD-YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       378 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ...+ ++++++||+||.+.--              |..+.+++..++.++++++++++..|.
T Consensus        68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            3455 4889999999977621              233446677788888777776655443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=96.77  E-value=0.086  Score=55.15  Aligned_cols=96  Identities=19%  Similarity=0.282  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004918           25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~----~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (724)
                      --++.....+.+..+++.+..+.    .+-+|.|.-.|+     +-+.+-..    . ...+.+ .+..+ ..+... +|
T Consensus        81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-VP  147 (301)
T PRK07189         81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAE-IMRAI-VDLRAA-VP  147 (301)
T ss_pred             CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence            36888888899999998887654    255666643332     22321100    0 000111 11222 224444 99


Q ss_pred             EEEEECcc--ccchhHHHHhhcCEEEEeCCceeeC
Q 004918          101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL  133 (724)
Q Consensus       101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~  133 (724)
                      +|+++.|.  |+||+...+.+||++||++++++++
T Consensus       148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            99999999  9999999999999999999888776

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.76  E-value=0.0039  Score=65.85  Aligned_cols=98  Identities=12%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      .-++|+|+|+|.+|..+|+.|...| .++.| .|++...+...+.           +             ....+..+-+
T Consensus       161 ~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~  215 (336)
T KOG0069|consen  161 EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELL  215 (336)
T ss_pred             cCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHH
Confidence            4478999999999999999999999 55555 5555443332110           0             0012223567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      +++|+|+.|.|-+.+...-+=+++...++++.+|+...-+-.+.
T Consensus       216 ~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iid  259 (336)
T KOG0069|consen  216 ANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIID  259 (336)
T ss_pred             hhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccccc
Confidence            89999999999888887777788999999999887555454443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.0086  Score=60.65  Aligned_cols=92  Identities=21%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-----c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-----S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-----~  383 (724)
                      ++|.|||+|.+|.++|..|.+.||+|+++|++++.+++....   .+...+-.|              . .++.     .
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~g--------------d-~t~~~~L~~a   62 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIG--------------D-ATDEDVLEEA   62 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEe--------------c-CCCHHHHHhc
Confidence            479999999999999999999999999999999987763220   000000001              0 1111     2


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEE
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA  420 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~  420 (724)
                      .+.++|.+|-+..+|..  ..++..+... +....+++
T Consensus        63 gi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~via   98 (225)
T COG0569          63 GIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIA   98 (225)
T ss_pred             CCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEE
Confidence            37899999999875543  3444444322 34444554

>PRK05086 malate dehydrogenase; Provisional

Probab=96.75  E-value=0.003  Score=67.25  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc--ccC-
Q 004918          309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD-  381 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-  381 (724)
                      +||+|||+ |.+|..++..+..   .+++++++|+++.....+. .+.       ...         ....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al-Dl~-------~~~---------~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV-DLS-------HIP---------TAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh-hhh-------cCC---------CCceEEEeCCCCH
Confidence            48999999 9999999998855   2568999999854210000 000       000         0012222  345 


Q ss_pred             ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       382 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ++++++||+||.|.-.              |..+.+++.+.+.++. ++.+++.
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~iviv  116 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGI  116 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            4789999999999832              2235566677777774 4555543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.74  E-value=0.0032  Score=65.81  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|+|+|.+|.+++..|+..|++|++++|++++++...+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            67999999999999999999999999999999988766544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.73  E-value=0.0076  Score=54.72  Aligned_cols=100  Identities=21%  Similarity=0.206  Sum_probs=58.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCccCc
Q 004918          310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  385 (724)
                      ||+|||+ |.+|..++..+... +++++.+ +++.+..+....          ..+.+...      ...... .+++ .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~~-~   63 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKGE------VVLELEPEDFE-E   63 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccccc------cccccccCChh-h
Confidence            6899995 99999999999884 8887766 554322211110          00101000      000011 1112 2


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      .++|+||.|+|.+.  ..++...+...+.+++++++.++++..
T Consensus        64 ~~~DvV~~~~~~~~--~~~~~~~~~~~~~~g~~viD~s~~~~~  104 (122)
T smart00859       64 LAVDIVFLALPHGV--SKEIAPLLPKAAEAGVKVIDLSSAFRM  104 (122)
T ss_pred             cCCCEEEEcCCcHH--HHHHHHHHHhhhcCCCEEEECCccccC
Confidence            58999999999553  334444444556789999988887764

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.71  E-value=0.0033  Score=69.58  Aligned_cols=88  Identities=24%  Similarity=0.304  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+...|.+|+++++++.....+..           .|             .. ..++ +.++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~-~~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQ-VVTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------ce-eccHHHHHhc
Confidence            68999999999999999999999999999999876433211           11             01 1122 45788


Q ss_pred             CCEEEEcccCChHHHHHHH-HHHHhhCCCCcEEEecCCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID  427 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~  427 (724)
                      +|+||.+.. .    +.++ .+..+.++++++|+ |++...
T Consensus       310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d  344 (476)
T PTZ00075        310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD  344 (476)
T ss_pred             CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence            999999864 2    2333 34556678998886 444433

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.69  E-value=0.005  Score=66.11  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.+|...+..++. .+. +|.+|+|++++.++..+++....      +           -.+...++. +.+
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~  190 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI  190 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            579999999999998877754 454 89999999998877655443210      1           012223444 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +++|+||.|.|...    .++.   ..+++++.|.+..|.
T Consensus       191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~  223 (325)
T PRK08618        191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF  223 (325)
T ss_pred             hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence            89999999998442    3333   346788877655443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.69  E-value=0.0041  Score=61.51  Aligned_cols=41  Identities=27%  Similarity=0.303  Sum_probs=36.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~   70 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD   70 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            68999996 999999999999999999999999888766544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.66  E-value=0.0055  Score=65.08  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.+|...+..+.. .+. +|.+|+|++++.++..++++.       .+ +          .+. .++. +++
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av  186 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP  186 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence            579999999999999999975 454 799999999988776554321       01 0          111 2333 568


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      .++|+||.|.|....+    +..   .+++++.|....+.
T Consensus       187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence            8999999999854433    322   25677766554443

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.65  E-value=0.029  Score=56.01  Aligned_cols=142  Identities=18%  Similarity=0.226  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      ++.++.+.+...+-.++.++..+-  +-|.+.|+...+|-=+..             ......++ +.|...+-||...+
T Consensus        49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv~  114 (222)
T PRK12552         49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTIC  114 (222)
T ss_pred             hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEEE
Confidence            444488888888877765443222  233455555444411100             01123455 66888888999999


Q ss_pred             CccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhhhh------------------ccccc--HHHHHHHH
Q 004918          106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLVG--LSKAIEMM  163 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~~l------------------~r~~G--~~~a~~l~  163 (724)
                      -|.|.+.+.-|++++|-  |++.++|++-+....-|..   |-+.-+                  ...-|  .....+++
T Consensus       115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~  191 (222)
T PRK12552        115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT  191 (222)
T ss_pred             EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence            99999999999999995  9999999998877654431   211111                  11111  23333444


Q ss_pred             HcCCCCCHHHHHHCCCcceecCc
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      -....++|+||++.||||+|+.+
T Consensus       192 ~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        192 DRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             cCCCcCCHHHHHHcCCCcEEecc
Confidence            55677899999999999999854

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.64  E-value=0.0046  Score=59.42  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||+|-| |..+|..|.+.|.+|++.+++.+.+.                                     +.+.+
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~   87 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ   87 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence            78999999987 88899999999999999999854322                                     24678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      ||+||.|++...-+..+       .++++.+|++....-.+
T Consensus        88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv  121 (168)
T cd01080          88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence            99999999743222222       24556777765544433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.63  E-value=0.0084  Score=58.87  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ||++||+|.+|..+...+...  .+ -|.+||++.+++..+.+..                      . ....+++ +.+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~-~~~~s~ide~~   58 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------G-RRCVSDIDELI   58 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------C-CCccccHHHHh
Confidence            799999999999999876644  24 4888999999876543211                      1 1122555 345


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (724)
                      ++.|+|+||..  .+..++...++.+. .-++||+| ++.+.
T Consensus        59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa   96 (255)
T COG1712          59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA   96 (255)
T ss_pred             hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence            89999999997  67666766665442 34556654 44444

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.61  E-value=0.0028  Score=70.42  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~  347 (724)
                      ++|+|||+|.||..++..|...| .+|++++++.++++..
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l  220 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL  220 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            68999999999999999999999 6899999999876543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.029  Score=60.78  Aligned_cols=147  Identities=21%  Similarity=0.248  Sum_probs=102.9

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCccCCCCchhhhhccCCCcccccchhHHHHH
Q 004918           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (724)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (724)
                      +..|..+.++.    .+++...+.+.+.++.++++.. -+||| --.++.+                     .+...+++
T Consensus        25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~iv   78 (436)
T COG1030          25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQIV   78 (436)
T ss_pred             CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHHHH
Confidence            34577777755    5999999999999999997752 34444 2223211                     12233556


Q ss_pred             HHHHhcCCCcEEEEEC---ccccchhHHHHhhcCEEEEeCCceeeCcccccCc--cCC-cc-hhhhhc------ccc--c
Q 004918           91 VNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IPG-FG-GTQRLP------RLV--G  155 (724)
Q Consensus        91 ~~~l~~~~kp~Iaav~---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~--~P~-~g-~~~~l~------r~~--G  155 (724)
                       +.|.+.|.|++..|.   +.|..+|.-++++||+..|.+.+.+|-...-.+-  .+. .. -...+.      +.-  -
T Consensus        79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence             779999999888883   4699999999999999999999998865543322  111 11 111111      111  2


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      ...|.+|+.....++++||++.|++|-+..
T Consensus       158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~  187 (436)
T COG1030         158 PTWAERFVTENLSLTAEEALRQGVIDLIAR  187 (436)
T ss_pred             hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence            367888999999999999999999998864

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.59  E-value=0.016  Score=61.33  Aligned_cols=124  Identities=18%  Similarity=0.153  Sum_probs=74.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCCH-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      -||+|||+|.||...+..+.+. +++++. +|+++ +.+..             ..+             +..+.+. +.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~   57 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH   57 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence            5899999999999999998765 788765 79985 32211             001             1112222 44


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (724)
                      +.++|+|+.|.|.....  +.   +.+.+..+.=+++..                         +++.           .
T Consensus        58 l~~iDVViIctPs~th~--~~---~~~~L~aG~NVV~s~-------------------------~~h~-----------~   96 (324)
T TIGR01921        58 LDDVDVLILCMGSATDI--PE---QAPYFAQFANTVDSF-------------------------DNHR-----------D   96 (324)
T ss_pred             ccCCCEEEEcCCCccCH--HH---HHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence            57899999999855442  22   222222322122210                         0111           1


Q ss_pred             CHHHHHHHHHHHHHcCCeeEE-EcCCCchhh-hhhhh
Q 004918          465 SAQVILDLMTVGKIIKKVPVV-VGNCTGFAV-NRAFF  499 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~-v~d~pG~i~-nRl~~  499 (724)
                      .++..+.+...++.-|+..++ .+--|||.. ||++.
T Consensus        97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~  133 (324)
T TIGR01921        97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG  133 (324)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence            357788888888887766654 488899654 78764

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PLN02494 adenosylhomocysteinase

Probab=96.59  E-value=0.0039  Score=68.82  Aligned_cols=87  Identities=15%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|+|.|.+|..+|..+...|.+|+++++++.+...+..           .|.             ... ++ +.++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G~-------------~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EGY-------------QVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cCC-------------eec-cHHHHHhh
Confidence            68999999999999999999999999999999876433211           110             001 12 45678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +|+||++... .   ..+..+..+.++++++|+....
T Consensus       310 ADVVI~tTGt-~---~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        310 ADIFVTTTGN-K---DIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             CCEEEECCCC-c---cchHHHHHhcCCCCCEEEEcCC
Confidence            9999987642 2   2223555567889998875443

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.58  E-value=0.035  Score=64.22  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             cCcEEEEEeCC-C--C---CCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC
Q 004918           12 NDGVAIITLIN-P--P---VNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (724)
Q Consensus        12 ~~~v~~i~l~~-p--~---~Nal~----------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~   75 (724)
                      ++.+.+|-++. +  +   .+.+.          ...+.++.++++.+..|+.|++|||.-.+   +.|.++..+.    
T Consensus        41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~----  113 (584)
T TIGR00705        41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV----  113 (584)
T ss_pred             CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence            56788888873 3  1   23221          23578999999999999999999997542   1233332221    


Q ss_pred             CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCc
Q 004918           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP  134 (724)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~p  134 (724)
                               ...+.+ ..+....|||||..++.+ -+|.-|+.+||.+++.+.+.+++.
T Consensus       114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEee
Confidence                     112333 346678899999888765 678999999999999988877553

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.57  E-value=0.0057  Score=65.67  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++++|||+|.+|...+..++ ..+. +|++|+|++++.++..+++...+      + +          .+...++. +++
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence            57999999999999999997 4664 69999999999887655432110      1 0          12223444 467


Q ss_pred             CCCCEEEEcccCC
Q 004918          386 KDVDMVIEAVIES  398 (724)
Q Consensus       386 ~~aDlVIeav~e~  398 (724)
                      .+||+||.|.|..
T Consensus       193 ~~aDiVvtaT~s~  205 (326)
T TIGR02992       193 SGADIIVTTTPSE  205 (326)
T ss_pred             ccCCEEEEecCCC
Confidence            8999999999743

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.53  E-value=0.0055  Score=64.30  Aligned_cols=70  Identities=17%  Similarity=0.205  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~  386 (724)
                      ++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+..       .+            .+....+ .+.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            68999999999999999999999 6999999999887765443221       00            0111111 24567


Q ss_pred             CCCEEEEcccC
Q 004918          387 DVDMVIEAVIE  397 (724)
Q Consensus       387 ~aDlVIeav~e  397 (724)
                      ++|+||.|+|-
T Consensus       185 ~~DivInaTp~  195 (278)
T PRK00258        185 DFDLIINATSA  195 (278)
T ss_pred             cCCEEEECCcC
Confidence            89999999983

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.53  E-value=0.021  Score=55.75  Aligned_cols=142  Identities=23%  Similarity=0.274  Sum_probs=85.8

Q ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.|..|    ++..+...+...+-.++.++..+-|.|  -+-|+...+|                      ..++ +.|.
T Consensus        30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~   82 (200)
T COG0740          30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQ   82 (200)
T ss_pred             EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHH
Confidence            445444    444455555555555555444443333  4444433333                      2455 6688


Q ss_pred             cCCCcEEEEECccccchhHHHHhhcCEE--EEeCCceeeCcccccCccCCcchhhh-------------h----ccccc-
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQR-------------L----PRLVG-  155 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~r--ia~~~a~f~~pe~~~G~~P~~g~~~~-------------l----~r~~G-  155 (724)
                      ..+.||...+-|.|..-|.-|++|+|..  ++.++|++-.-... |.+-|.. +-.             +    ...-| 
T Consensus        83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~i~a~~TGq  160 (200)
T COG0740          83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNRIYAEHTGQ  160 (200)
T ss_pred             hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999985  77777777654443 2221111 100             0    00011 


Q ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCcceecCcch
Q 004918          156 -LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE  188 (724)
Q Consensus       156 -~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~  188 (724)
                       ..+-...+-....++|+||+++||||+|....+
T Consensus       161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             CHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence             122223334566789999999999999986543

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.52  E-value=0.065  Score=54.12  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             ccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccC----CCCCEEEEecCCCCCCCC
Q 004918          379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSPAHVMP  454 (724)
Q Consensus       379 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~----~~~r~ig~h~~~p~~~~~  454 (724)
                      ++|.|+++++|++|.=.|..- ....+++++.+.+++++|| +||.++|...+...+.    ..-.+..+||-.=| -++
T Consensus       133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP-gt~  209 (342)
T PRK00961        133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP-EMK  209 (342)
T ss_pred             cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC-CCC
Confidence            455699999999999998433 1247788888999999987 6788888776655443    22346666764322 222


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhh
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAV  494 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~  494 (724)
                      .-..+.-...++|.++++.++.+..|+.+.++ .+.-+-+.
T Consensus       210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~  250 (342)
T PRK00961        210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVC  250 (342)
T ss_pred             CceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhh
Confidence            22223334568999999999999999999987 34333333

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.47  E-value=0.0028  Score=57.53  Aligned_cols=99  Identities=18%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc-CccCc
Q 004918          310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF  385 (724)
Q Consensus       310 kI~VIG-~G~mG~~iA~~la~~G-~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  385 (724)
                      ||+||| .|.+|..+...|.++= ++ +.++.++.+.-.....    ...  ...+          ...+...+ +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~~~--~~~~----------~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----VFP--HPKG----------FEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----TTG--GGTT----------TEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----hcc--cccc----------ccceeEeecchhHh
Confidence            799999 7999999999999852 34 5556666522111110    000  0000          01223322 44667


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      .++|+||.|+|  ....+++..++   +..++.|+++++.+...
T Consensus        65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~  103 (121)
T PF01118_consen   65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD  103 (121)
T ss_dssp             TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred             hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence            99999999998  66666776665   35778888988887554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.45  E-value=0.008  Score=64.68  Aligned_cols=73  Identities=16%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+++++.+      + +          .+...++. +++
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al  195 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV  195 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence            589999999999998888875 44 589999999999887655433211      1 0          12233444 567


Q ss_pred             CCCCEEEEcccCC
Q 004918          386 KDVDMVIEAVIES  398 (724)
Q Consensus       386 ~~aDlVIeav~e~  398 (724)
                      .+||+||.|.|..
T Consensus       196 ~~aDiVi~aT~s~  208 (330)
T PRK08291        196 AGADIIVTTTPSE  208 (330)
T ss_pred             ccCCEEEEeeCCC
Confidence            8899999998743

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.44  E-value=0.035  Score=55.18  Aligned_cols=129  Identities=20%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||+|.+|...+..|.+.|.+|++++++.. .+..           ..+.+.+.         ...-.-..+.+.+
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~   70 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD   70 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence            6899999999999999999999999999986532 1111           11222111         0000111246789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (724)
                      +|+||-|.. +.++...+....    ..+ +++.+....+.               ..|..|.  ..+++...|.+.+.+
T Consensus        71 adlViaaT~-d~elN~~i~~~a----~~~-~lvn~~d~~~~---------------~~f~~Pa~~~~g~l~iaIsT~G~s  129 (202)
T PRK06718         71 AFLVIAATN-DPRVNEQVKEDL----PEN-ALFNVITDAES---------------GNVVFPSALHRGKLTISVSTDGAS  129 (202)
T ss_pred             ceEEEEcCC-CHHHHHHHHHHH----HhC-CcEEECCCCcc---------------CeEEEeeEEEcCCeEEEEECCCCC
Confidence            999998764 556655554433    233 33333222111               1222232  345566667777778


Q ss_pred             HHHHHHHHHHHHH
Q 004918          466 AQVILDLMTVGKI  478 (724)
Q Consensus       466 ~e~~~~~~~l~~~  478 (724)
                      |.....++.-++.
T Consensus       130 P~la~~lr~~ie~  142 (202)
T PRK06718        130 PKLAKKIRDELEA  142 (202)
T ss_pred             hHHHHHHHHHHHH
Confidence            8877777766664

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.35  E-value=0.0062  Score=68.77  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +++.|+|+|.+|.+++..|+..|++|++++|++++++...+.+.        ....+             ..+...+.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--------~~~~~-------------~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--------GKAFP-------------LESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cceec-------------hhHhcccCCC
Confidence            57999999999999999999999999999999887665432110        00011             1122336789


Q ss_pred             CEEEEcccCCh
Q 004918          389 DMVIEAVIESV  399 (724)
Q Consensus       389 DlVIeav~e~~  399 (724)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999998554

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.025  Score=61.79  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             cceEEEEcCCCCcHHHHH--HHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGLMGSGIAT--AHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~--~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      ..||+|||+|..+.+--.  .+.+    .+.++.++|+++++++..    .....+.++.-..+        -++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecC
Confidence            358999999998766432  2222    255899999999997732    23333344332211        34667788


Q ss_pred             c-cCcCCCCEEEEcc
Q 004918          382 Y-SEFKDVDMVIEAV  395 (724)
Q Consensus       382 ~-~~~~~aDlVIeav  395 (724)
                      . +++++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            7 7899999999886

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.33  E-value=0.0059  Score=58.13  Aligned_cols=70  Identities=23%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+ |..|+-|+.-..+.||+|+.+-||+.++.... .+     ..+++...            ..+...+++.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~-~~-----~i~q~Dif------------d~~~~a~~l~g   62 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ-GV-----TILQKDIF------------DLTSLASDLAG   62 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc-cc-----eeeccccc------------ChhhhHhhhcC
Confidence            48999998 99999999999999999999999999865410 00     00111111            11121257889


Q ss_pred             CCEEEEccc
Q 004918          388 VDMVIEAVI  396 (724)
Q Consensus       388 aDlVIeav~  396 (724)
                      -|+||.+.-
T Consensus        63 ~DaVIsA~~   71 (211)
T COG2910          63 HDAVISAFG   71 (211)
T ss_pred             CceEEEecc
Confidence            999999984

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.32  E-value=0.0081  Score=63.08  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|||+|-+|++++..|+..|. +|++++|++++.+...+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            579999999999999999999997 69999999988776544

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.31  E-value=0.0078  Score=65.73  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      .+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            679999999999999999999999999999999876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.30  E-value=0.085  Score=59.93  Aligned_cols=166  Identities=11%  Similarity=0.112  Sum_probs=103.9

Q ss_pred             EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004918           16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (724)
Q Consensus        16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (724)
                      .-|.-|+|.  .-++++.-.+...++++.+.+. .+-+|.|.-.++ |..|.+-+.          ........+++ .+
T Consensus       317 V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a  383 (512)
T TIGR01117       317 VGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YA  383 (512)
T ss_pred             EEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HH
Confidence            334446664  3579999999999999988754 566777754333 655544221          11222333555 56


Q ss_pred             HhcCCCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhh-cccc----cHHHHHHHH-
Q 004918           94 IEDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLV----GLSKAIEMM-  163 (724)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l-~r~~----G~~~a~~l~-  163 (724)
                      +....+|.|+.|-|.|.|||..-+.    .+|+++|.+++.+++       .+.-+++..+ .+.+    -...++.-. 
T Consensus       384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~  456 (512)
T TIGR01117       384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI  456 (512)
T ss_pred             HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence            7889999999999999888643333    289999888887764       3222222222 1111    011111111 


Q ss_pred             --HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004918          164 --LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       164 --ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                        ..-+.-++..+.+.|+||.|+++.++........+.+.
T Consensus       457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~  496 (512)
T TIGR01117       457 AEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE  496 (512)
T ss_pred             HHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence              12234578899999999999999998887777766543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.26  E-value=0.0077  Score=58.62  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             EEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       311 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      |.|+|+ |.+|..++..|.+.|++|+++.|++++++. ...+     ..+.....+.+..            .+++++||
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~-----~~~~~d~~d~~~~------------~~al~~~d   62 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGV-----EIIQGDLFDPDSV------------KAALKGAD   62 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTE-----EEEESCTTCHHHH------------HHHHTTSS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-cccc-----ccceeeehhhhhh------------hhhhhhcc
Confidence            789997 999999999999999999999999987654 0000     0000000010000            14578999


Q ss_pred             EEEEcccC---ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          390 MVIEAVIE---SVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       390 lVIeav~e---~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      .||.+++.   +....+.+++.+...-.+..+++|..+
T Consensus        63 ~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   63 AVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             EEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence            99999973   334444555555443222334444433

...

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.25  E-value=0.012  Score=62.21  Aligned_cols=93  Identities=15%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++++|||+|..|...+..++.- . .+|.+|+|++++.++..++++..+      +           -.+...++. +++
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav  180 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL  180 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            6799999999999998888753 3 379999999999887665543211      1           123334444 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ++||+|+.|.+....    ++.  .+.++|++-|....|
T Consensus       181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs  213 (301)
T PRK06407        181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS  213 (301)
T ss_pred             hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence            999999999874432    221  124567766654443

>PRK10949 protease 4; Provisional

Probab=96.22  E-value=0.045  Score=63.38  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECccccc
Q 004918           32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG  111 (724)
Q Consensus        32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~G  111 (724)
                      .+.++.++++.+..|+.|++|||.-.+.   .|.....+             +...+.+ ..+....||+||. ...+.-
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s  157 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQ  157 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence            4568999999999999999999975432   12222111             1112333 3466788999985 444456


Q ss_pred             hhHHHHhhcCEEEEeCCceeeCc
Q 004918          112 GGLELAMGCHARIAAPKTQLGLP  134 (724)
Q Consensus       112 gG~~lalacD~ria~~~a~f~~p  134 (724)
                      ++.-|+.+||.+++.+.+.+++.
T Consensus       158 ~~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        158 GQYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             hhhhhhhhCCEEEECCCceEEEe
Confidence            79999999999999988777543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.19  E-value=0.0048  Score=68.79  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  347 (724)
                      ++|+|||+|.||..++..+...|. +|+++++++++++..
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l  222 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL  222 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence            689999999999999999999997 799999999876654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.18  E-value=0.026  Score=68.60  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHC-CCc-------------EEEEeCCHHHHHHHH
Q 004918          305 PRGVRKVAVIGGGLMGSGIATAHILN-NIY-------------VVLKEVNSEYLLKGI  348 (724)
Q Consensus       305 ~~~~~kI~VIG~G~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~  348 (724)
                      ...++||+|||+|.||...|..|++. +++             |++.|++++.++++.
T Consensus       566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la  623 (1042)
T PLN02819        566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV  623 (1042)
T ss_pred             cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence            34578999999999999999999875 334             999999998876643

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.18  E-value=0.011  Score=53.78  Aligned_cols=102  Identities=18%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             eEEEEcC-CCCcHHHHHHHHH-CCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          310 KVAVIGG-GLMGSGIATAHIL-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ||+|+|+ |.||+.++..+.+ .|+++ -.+|++++....  +.+..    ....+          ...+..++++ +.+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~----~~~~~----------~~~~~v~~~l~~~~   65 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGE----LAGIG----------PLGVPVTDDLEELL   65 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHH----HCTSS----------T-SSBEBS-HHHHT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhh----hhCcC----------CcccccchhHHHhc
Confidence            7999999 9999999999998 68885 456877621110  00000    00000          0123445566 446


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                      ..+|+||+...  ++...+.++...++   +..+++.|+++.-.++.
T Consensus        66 ~~~DVvIDfT~--p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~  107 (124)
T PF01113_consen   66 EEADVVIDFTN--PDAVYDNLEYALKH---GVPLVIGTTGFSDEQID  107 (124)
T ss_dssp             TH-SEEEEES---HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHH
T ss_pred             ccCCEEEEcCC--hHHhHHHHHHHHhC---CCCEEEECCCCCHHHHH
Confidence            77999999873  66555555555443   66677788888765443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.17  E-value=0.025  Score=56.32  Aligned_cols=131  Identities=18%  Similarity=0.207  Sum_probs=78.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||+|.+|..-+..|.+.|.+|++++.+... +..           +.+.+.+.         .+...-..+.+.+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~   69 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG   69 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence            68999999999999999999999999999876541 111           12222221         1110111245789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCC--CCCCCeeeEecCCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTS  465 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p--~~~~~lveii~~~~t~  465 (724)
                      +|+||.|. ++.++...++.....    ..+++.+.+....               ..|..|  ...++++.-|.+.+.+
T Consensus        70 ~~lVi~at-~d~~ln~~i~~~a~~----~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s  129 (205)
T TIGR01470        70 AFLVIAAT-DDEELNRRVAHAARA----RGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA  129 (205)
T ss_pred             cEEEEECC-CCHHHHHHHHHHHHH----cCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence            99999885 466666666655432    2344432222211               122233  3445566667777778


Q ss_pred             HHHHHHHHHHHHHc
Q 004918          466 AQVILDLMTVGKII  479 (724)
Q Consensus       466 ~e~~~~~~~l~~~l  479 (724)
                      |.....++.-++.+
T Consensus       130 P~la~~lr~~ie~~  143 (205)
T TIGR01470       130 PVLARLLRERIETL  143 (205)
T ss_pred             cHHHHHHHHHHHHh
Confidence            87777766666543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.14  E-value=0.032  Score=50.18  Aligned_cols=77  Identities=21%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004918          310 KVAVIGGGLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  385 (724)
                      ||+|||+|.+|......+.+.  +.+| .++|++++..+...+.                       -.+...++++ .+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence            799999999999999888877  4454 4789999887664221                       1122344553 33


Q ss_pred             C--CCCEEEEcccCChHHHHHHHHHHHh
Q 004918          386 K--DVDMVIEAVIESVPLKQKIFSELEK  411 (724)
Q Consensus       386 ~--~aDlVIeav~e~~~~k~~v~~~l~~  411 (724)
                      +  +.|+|+.++|.  ..-.++..+..+
T Consensus        59 ~~~~~D~V~I~tp~--~~h~~~~~~~l~   84 (120)
T PF01408_consen   59 ADEDVDAVIIATPP--SSHAEIAKKALE   84 (120)
T ss_dssp             HHTTESEEEEESSG--GGHHHHHHHHHH
T ss_pred             HhhcCCEEEEecCC--cchHHHHHHHHH
Confidence            3  78999999984  333455544433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.12  E-value=0.017  Score=61.48  Aligned_cols=91  Identities=13%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      .+.++|||+|.++.-....+..-  .-+|.+|+|+++..++...++++.       +.          ..+...++. ++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~a  192 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEEA  192 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHHH
Confidence            46799999999999999888753  348999999999988876544332       11          123344554 67


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++||+|+.|.|.+..+..      .+.+++++-|..
T Consensus       193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~a  223 (330)
T COG2423         193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINA  223 (330)
T ss_pred             hhcCCEEEEecCCCCCeec------HhhcCCCcEEEe
Confidence            8999999999985543221      123556665543

>PRK06046 alanine dehydrogenase; Validated

Probab=96.08  E-value=0.015  Score=62.42  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=58.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.+|...+..+... +. .|.+||+++++.++..+++.+.+      +           -.+...++. +.+
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l  192 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC  192 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence            5899999999999999988743 43 78999999998887655432110      1           012233444 345


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      + +|+|+.|.|....    ++.  .+.+++++.|.+..|
T Consensus       193 ~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs  224 (326)
T PRK06046        193 D-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA  224 (326)
T ss_pred             h-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence            4 9999999985432    221  123567776654443

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.06  E-value=0.019  Score=61.20  Aligned_cols=93  Identities=10%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++++|||+|.++...+..+...  --+|.+|+|++++.++..+.+++       .+           -.+...++. +++
T Consensus       129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av  190 (315)
T PRK06823        129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEVA  190 (315)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHHh
Confidence            6899999999999999887653  34899999999998876543321       11           123334454 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ++||+|+.|.+....    ++.  .+.+++++.|....|.
T Consensus       191 ~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        191 HAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD  224 (315)
T ss_pred             cCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence            999999999874433    221  1345677776554443

>PLN00203 glutamyl-tRNA reductase

Probab=96.05  E-value=0.0052  Score=69.62  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||..++..|...|. +|++++|+.+.++...+.+.         + ..        -.+...++. +.+.
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g-~~--------i~~~~~~dl~~al~  328 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------D-VE--------IIYKPLDEMLACAA  328 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------C-Cc--------eEeecHhhHHHHHh
Confidence            689999999999999999999997 79999999988766433210         1 00        000111222 5578


Q ss_pred             CCCEEEEcccCCh-HHHHHHHHHH
Q 004918          387 DVDMVIEAVIESV-PLKQKIFSEL  409 (724)
Q Consensus       387 ~aDlVIeav~e~~-~~k~~v~~~l  409 (724)
                      ++|+||.|++-.. -+..+.++.+
T Consensus       329 ~aDVVIsAT~s~~pvI~~e~l~~~  352 (519)
T PLN00203        329 EADVVFTSTSSETPLFLKEHVEAL  352 (519)
T ss_pred             cCCEEEEccCCCCCeeCHHHHHHh
Confidence            8999999875322 3344444444

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.95  E-value=0.013  Score=58.35  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      +||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            579999999999999999999998 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=95.95  E-value=0.24  Score=50.36  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=73.3

Q ss_pred             ccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcc---cCC-CCCEEEEecCCCCCCCC
Q 004918          379 VLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPAHVMP  454 (724)
Q Consensus       379 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~---~~~-~~r~ig~h~~~p~~~~~  454 (724)
                      ++|.|+++++|++|.=.|..- ....+.+++.+.+++++|| +||.++|...+...   +.+ .-.+..+||-.=|..-.
T Consensus       131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~  208 (340)
T TIGR01723       131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKG  208 (340)
T ss_pred             cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCC
Confidence            455699999999999998433 1247788888999999987 67888887744443   332 23466677643221111


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      -+=++. ...++|.++++.++.+..|+.+.++.
T Consensus       209 q~Yi~e-gyAtEEqI~klveL~~sa~k~ay~~P  240 (340)
T TIGR01723       209 QVYIAE-GYASEEAVNKLYELGKKARGKAFKMP  240 (340)
T ss_pred             ceEeec-ccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            222333 35689999999999999999998873

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.92  E-value=0.018  Score=59.98  Aligned_cols=43  Identities=14%  Similarity=0.134  Sum_probs=38.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|.|+|+|-++.+++..|++.|. ++++++|+.+++++..+.+
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~  170 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF  170 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence            689999999999999999999995 7999999999988765543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.89  E-value=0.009  Score=65.98  Aligned_cols=68  Identities=19%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-ccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~  386 (724)
                      +||.|||+|-||..++..|+..|. ++++++|+.++++...+.+.        .+            .....++ .+.+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~------------~~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NA------------SAHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CC------------eEecHHHHHHHhc
Confidence            589999999999999999999996 79999999887665433211        01            0111122 25578


Q ss_pred             CCCEEEEccc
Q 004918          387 DVDMVIEAVI  396 (724)
Q Consensus       387 ~aDlVIeav~  396 (724)
                      ++|+||.|++
T Consensus       242 ~aDiVI~aT~  251 (414)
T PRK13940        242 KADIIIAAVN  251 (414)
T ss_pred             cCCEEEECcC
Confidence            8999999986

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.88  E-value=0.023  Score=59.16  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||.|. +|.++|..|.+.|..|+++++....+.                                     +.+++
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999987543221                                     24678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.|++-..-+..       ..+++++++++..+
T Consensus       202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi  231 (286)
T PRK14175        202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN  231 (286)
T ss_pred             CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence            9999999973322222       24678888876554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.84  E-value=0.056  Score=48.32  Aligned_cols=92  Identities=22%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcCCC
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFKDV  388 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~a  388 (724)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+...     .+-.|-.+..            ..+  ..+.+|
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~-----~~i~gd~~~~------------~~l~~a~i~~a   63 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV-----EVIYGDATDP------------EVLERAGIEKA   63 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS-----EEEES-TTSH------------HHHHHTTGGCE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc-----ccccccchhh------------hHHhhcCcccc
Confidence            579999999999999999987799999999999777543110     0001111100            001  346789


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      |.||.+.+++ .....+...+.+..+...+++
T Consensus        64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   64 DAVVILTDDD-EENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEE
T ss_pred             CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEE
Confidence            9999988744 333344444555455445554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.84  E-value=0.025  Score=58.45  Aligned_cols=99  Identities=19%  Similarity=0.234  Sum_probs=54.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc---
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY---  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  382 (724)
                      +||++||.|.+-.+.-......  |..|..+|+++++.+.+.+-+...+.  +.             .++.+. .|.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence            5999999999987765544443  45788999999998877653331110  01             223222 121   


Q ss_pred             -cCcCCCCEEEEccc--CChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          383 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       383 -~~~~~aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                       .+++++|+|+.|.-  -+.+-|.+++..+.++++++++|+.-
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence             35688999999874  23448999999999999999988753

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.80  E-value=0.012  Score=64.18  Aligned_cols=41  Identities=27%  Similarity=0.239  Sum_probs=37.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~  349 (724)
                      +||.|||+|-||...|.+|..+| ..|++.+|+.+++....+
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~  220 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK  220 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            68999999999999999999999 589999999999877544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.78  E-value=0.26  Score=52.54  Aligned_cols=41  Identities=24%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|+|+|+|-+|.--.+.....|.+|+.+|+++++++.+++
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~  208 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK  208 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence            68999999977766666666689999999999999887643

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.78  E-value=0.031  Score=47.27  Aligned_cols=32  Identities=34%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLKEV  339 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~  339 (724)
                      -++++|+|+|.+|.+++..+.+. +.+|++||+
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            36899999999999999999998 678999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.78  E-value=0.026  Score=58.45  Aligned_cols=92  Identities=18%  Similarity=0.107  Sum_probs=54.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      .||+|+|+ |.||..++..+.+. +++++. +|++++.....            ..            ..+...+++ +.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            48999998 99999999988764 677654 78887653221            00            012234455 33


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      ++++|+||++.+  ++.-.++.....+   .+.-++..|++++..
T Consensus        58 l~~~DvVid~t~--p~~~~~~~~~al~---~G~~vvigttG~s~~   97 (257)
T PRK00048         58 LADADVLIDFTT--PEATLENLEFALE---HGKPLVIGTTGFTEE   97 (257)
T ss_pred             ccCCCEEEECCC--HHHHHHHHHHHHH---cCCCEEEECCCCCHH
Confidence            567999998887  4443444433322   333233334455544

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.77  E-value=0.024  Score=59.01  Aligned_cols=78  Identities=15%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc-
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  385 (724)
                      .||+|||+|.||..++..+.+. +.++..+ +++.. .++..+.        ..             ..+..+++++++ 
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l~   59 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDALP   59 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence            5899999999999999999876 5665443 33221 1111100        00             013334555444 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELE  410 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~  410 (724)
                      .+.|+|++|.|  ...-.++..+..
T Consensus        60 ~~~DvVve~t~--~~~~~e~~~~aL   82 (265)
T PRK13303         60 QRPDLVVECAG--HAALKEHVVPIL   82 (265)
T ss_pred             cCCCEEEECCC--HHHHHHHHHHHH
Confidence            56899999998  333344444443

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.70  E-value=0.038  Score=59.51  Aligned_cols=95  Identities=14%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++++|||+|..+...+..+..-  -.+|++|+|++++.++..+++++       .+           -.+...++. +++
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av  191 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEAV  191 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHHH
Confidence            6799999999998887766542  34899999999998876554432       11           023334455 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ++||+|+.|.+....  ..++.  .+.+++++.|....|.
T Consensus       192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~  227 (346)
T PRK07589        192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD  227 (346)
T ss_pred             hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence            999999999863220  01111  1345788766554443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.65  E-value=0.035  Score=57.19  Aligned_cols=92  Identities=23%  Similarity=0.290  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc--c--cCc-c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--V--LDY-S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~--~~~-~  383 (724)
                      .||+|||.|..|.--|+...--|-+|++.|+|.+++...-...                     ..++..  +  .++ +
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f---------------------~~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF---------------------GGRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh---------------------CceeEEEEcCHHHHHH
Confidence            5899999999999999998888999999999999877642211                     122211  1  122 6


Q ss_pred             CcCCCCEEEEccc-CChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          384 EFKDVDMVIEAVI-ESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       384 ~~~~aDlVIeav~-e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      .+..+|+||-+|- ...+.-+-+.++..+.++++++|++
T Consensus       228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence            7899999998871 0111222455666677889998875

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.65  E-value=0.014  Score=64.38  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC-C-cEEEEeCCHHHHHHHHH
Q 004918          311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~~  349 (724)
                      |.|+|+|.+|+.++..|++.+ + +|++.||+.+++++..+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~   41 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE   41 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence            789999999999999999986 4 89999999999877543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.53  E-value=0.21  Score=56.82  Aligned_cols=137  Identities=23%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCC--CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  102 (724)
                      ..+++....+.+..+++.+..+ .+-+|.|.-     |.|+  ++++-...     ...+.. ....+ ..+.. ..|+|
T Consensus        70 gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~-i~~~~-~~~~~-~iP~I  135 (493)
T PF01039_consen   70 GGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGR-IFRAI-ARLSG-GIPQI  135 (493)
T ss_dssp             GGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHH-HHHHH-HHHHT-TS-EE
T ss_pred             cCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHH-HHHHH-HHHhc-CCCeE
Confidence            4789999999999999998876 455566643     3344  33332211     001111 11222 33555 99999


Q ss_pred             EEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------
Q 004918          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------  174 (724)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------  174 (724)
                      +++.|.|.|||..++..||++|++++ +.+++.                    |+. ..+ ..+|+.++.++.       
T Consensus       136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~-vv~-~~~Ge~~~~~~lgG~~~h~  193 (493)
T PF01039_consen  136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPR-VVE-SATGEEVDSEELGGADVHA  193 (493)
T ss_dssp             EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THH-HHH-HHHSSCTSHHHHHBHHHHH
T ss_pred             EEEccccccchhhcccccCccccCccceEEEec--------------------ccc-ccc-cccCccccchhhhhhhhhc
Confidence            99999999999999999999999987 776632                    111 112 345688888764       


Q ss_pred             HHCCCcceecCcch-HHHHHHHHH
Q 004918          175 WKLGLIDAVVTSEE-LLKVSRLWA  197 (724)
Q Consensus       175 ~~~Glv~~vv~~~~-l~~~a~~~a  197 (724)
                      ...|.+|.++++++ ..+.+.++.
T Consensus       194 ~~sG~~d~v~~de~~a~~~ir~~l  217 (493)
T PF01039_consen  194 AKSGVVDYVVDDEEDALAQIRRLL  217 (493)
T ss_dssp             HTSSSSSEEESSHHHHHHHHHHHH
T ss_pred             ccCCCceEEEechHHHHHHHHHhh
Confidence            47899999997653 333333333

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.50  E-value=0.013  Score=62.48  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++++|||+|..+..-+..++. .+. +|.+|+|+++++++..++++. +      +           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence            579999999999998887765 334 899999999998876654432 0      1           124445555 678


Q ss_pred             CCCCEEEEcccCCh--HHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ++||+|+.|.+...  .+    +.  ...+++++.|....+.
T Consensus       191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence            99999999987444  22    11  1346778877655443

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.063  Score=59.89  Aligned_cols=38  Identities=32%  Similarity=0.498  Sum_probs=34.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      ..++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            34789999999999999999999999999999887653

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.49  E-value=0.03  Score=60.31  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      ++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            579999999999999999999998 899999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.44  E-value=0.14  Score=48.65  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV  339 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~  339 (724)
                      ++|.|||+|.+|...+..|.+.|++|++++.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            6899999999999999999999999999963

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.44  E-value=0.037  Score=57.92  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||.|. .|.++|..|.+.|..|+++++..+.+.                                     +.+++
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~  202 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ  202 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999997 999999999999999999998433221                                     23478


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +|+||.|++....+.       .+.+++++++++
T Consensus       203 aDIvI~AtG~~~~v~-------~~~lk~gavViD  229 (283)
T PRK14192        203 ADIIVGAVGKPELIK-------KDWIKQGAVVVD  229 (283)
T ss_pred             CCEEEEccCCCCcCC-------HHHcCCCCEEEE
Confidence            999999995222111       134678888765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.35  E-value=0.021  Score=64.39  Aligned_cols=41  Identities=24%  Similarity=0.121  Sum_probs=37.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      .||.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            68999999999999999999999999999999999887643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.24  E-value=0.089  Score=59.27  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            379999999999999999999999999999999987664

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.22  E-value=0.012  Score=57.72  Aligned_cols=53  Identities=21%  Similarity=0.228  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHH
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADA  673 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~  673 (724)
                      .++..||+.++++||.-+++..||. +..|+|.+|-.|+|.+..-.||++.+-+
T Consensus       188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HL  240 (313)
T KOG2305|consen  188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHL  240 (313)
T ss_pred             ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhc
Confidence            4789999999999999999999999 8999999999999988888899997654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.12  E-value=0.062  Score=60.51  Aligned_cols=40  Identities=25%  Similarity=0.136  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      .||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~  204 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  204 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6999999999999999999999999999999999876654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=95.10  E-value=0.054  Score=55.17  Aligned_cols=85  Identities=21%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             HHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCH
Q 004918           92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS  171 (724)
Q Consensus        92 ~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  171 (724)
                      ..+.++++|+||.|=|---+||.--..-+|.+.|.++++|+.      +.|.++++.+|.--   .+|.+. -..-.|+|
T Consensus       182 ~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eA-Ae~mkita  251 (317)
T COG0825         182 REMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEA-AEAMKITA  251 (317)
T ss_pred             HHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHH-HHHcCCCH
Confidence            347899999999999988777766666789999999999984      55766666655432   344433 34457999


Q ss_pred             HHHHHCCCcceecCc
Q 004918          172 EEGWKLGLIDAVVTS  186 (724)
Q Consensus       172 ~eA~~~Glv~~vv~~  186 (724)
                      ++.+++|+||.|+|.
T Consensus       252 ~dLk~lgiID~II~E  266 (317)
T COG0825         252 HDLKELGIIDGIIPE  266 (317)
T ss_pred             HHHHhCCCcceeccC
Confidence            999999999999964

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.09  E-value=0.042  Score=60.09  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=53.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--C-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN--N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~--G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      .++++|||+|.++......++.-  . -+|.+|+|+++++++..+++...+.     +.          ..+...++. +
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e  219 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE  219 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence            36799999999999999888763  2 3899999999998876654432110     00          013334555 6


Q ss_pred             CcCCCCEEEEccc
Q 004918          384 EFKDVDMVIEAVI  396 (724)
Q Consensus       384 ~~~~aDlVIeav~  396 (724)
                      ++++||+|+.|.+
T Consensus       220 av~~ADIVvtaT~  232 (379)
T PRK06199        220 VVRGSDIVTYCNS  232 (379)
T ss_pred             HHcCCCEEEEccC
Confidence            7899999999885

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.05  E-value=0.65  Score=52.85  Aligned_cols=139  Identities=16%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH-HHHhcCCCcEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-NLIEDCKKPIVA  103 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kp~Ia  103 (724)
                      .-+++....+.+..+++.+..+. +-+|.|.-.|+     +.+.+-..        .+.... +.+. .....-..|.|+
T Consensus        95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-----arm~eg~~--------~l~~~~-~~~~~~~~~s~~iP~Is  159 (512)
T TIGR01117        95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-----ARIQEAVD--------ALKGYG-DIFYRNTIASGVVPQIS  159 (512)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-----CCccccch--------hhhhHH-HHHHHHHHHcCCCcEEE
Confidence            47888889999999999887654 55666643322     22221000        000111 1111 112334589999


Q ss_pred             EECccccchhHHHHhhcCEEEEeCCc-eeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------H
Q 004918          104 AVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W  175 (724)
Q Consensus       104 av~G~a~GgG~~lalacD~ria~~~a-~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~  175 (724)
                      ++.|.|.||+......|||+|+++++ .+++           +         |+. ..+. .+|+.+++++.       .
T Consensus       160 vv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------a---------GP~-vv~~-~~Ge~v~~e~lGGa~~h~~  217 (512)
T TIGR01117       160 AIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------T---------GPQ-VIKT-VTGEEVTAEQLGGAMAHNS  217 (512)
T ss_pred             EEecCCCcHHHHHHHhcCceEEeccceEEEe-----------c---------ChH-HHHh-hcCcccchhhcchHHHhcc
Confidence            99999999998888899999999863 3443           1         111 1111 34566666554       2


Q ss_pred             HCCCcceecCcc-hHHHHHHHHHHHH
Q 004918          176 KLGLIDAVVTSE-ELLKVSRLWALDI  200 (724)
Q Consensus       176 ~~Glv~~vv~~~-~l~~~a~~~a~~l  200 (724)
                      ..|++|.+++++ +..+.++++...+
T Consensus       218 ~sGv~d~~~~de~ea~~~~r~~ls~l  243 (512)
T TIGR01117       218 VSGVAHFIAEDDDDCIMLIRRLLSFL  243 (512)
T ss_pred             ccceeEEecCChHHHHHHHHHHHHhC
Confidence            589999998554 4555555554443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.04  E-value=0.045  Score=57.41  Aligned_cols=42  Identities=14%  Similarity=0.261  Sum_probs=37.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|+|+|-.|++++..|++.|. +|+++||+.++.++..+.
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~  170 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV  170 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence            579999999999999999999997 799999999887765543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.04  E-value=0.072  Score=54.84  Aligned_cols=49  Identities=14%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHH
Q 004918          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN  354 (724)
Q Consensus       306 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~  354 (724)
                      +..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..+++++.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~   53 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK   53 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh
Confidence            34567888898 99999999999999999999999999999988777653

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.99  E-value=0.1  Score=60.60  Aligned_cols=94  Identities=13%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (724)
                      .+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+.     ...+-.|..+..            +.+  ..++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~------------~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE------------EIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH------------HHHHhcCcc
Confidence            579999999999999999999999999999999988775421     000001111100            001  2467


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      +||.||.++++|.+... +...+....+.-.|++
T Consensus       481 ~a~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia  513 (558)
T PRK10669        481 CARWLLLTIPNGYEAGE-IVASAREKRPDIEIIA  513 (558)
T ss_pred             ccCEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence            99999999987665432 3333444433334544

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.98  E-value=0.13  Score=52.14  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc---EEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~  340 (724)
                      +||.|+|+|.+|.++|..|...|..   |+++||+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            5899999999999999999999975   9999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.96  E-value=0.034  Score=46.24  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      ||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.96  E-value=0.098  Score=48.83  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      ||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.95  E-value=0.73  Score=52.91  Aligned_cols=147  Identities=16%  Similarity=0.107  Sum_probs=87.0

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH--HH
Q 004918           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NL   93 (724)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~   93 (724)
                      +.-|.+.  ..+++....+.+..+++.+... .+-+|.|.-.|+.+     +.+      ..+........-+++.  ..
T Consensus       133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGar-----l~~------q~e~~~~~~~~g~if~~~~~  200 (569)
T PLN02820        133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGAN-----LPR------QAEVFPDRDHFGRIFYNQAR  200 (569)
T ss_pred             EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-----Ccc------cccccchHhHHHHHHHHHHH
Confidence            3334443  4799999999999999988765 45666665433332     211      0000000001112221  22


Q ss_pred             HhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH
Q 004918           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (724)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  172 (724)
                      +....+|.|++|-|.|.|||......||++|+++. +.+++                    -|+... + ..+|+.++++
T Consensus       201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~--------------------aGP~vV-~-~~~Ge~v~~e  258 (569)
T PLN02820        201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL--------------------AGPPLV-K-AATGEEVSAE  258 (569)
T ss_pred             HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe--------------------cCHHHH-H-hhcCcccCHH
Confidence            44567999999999999999999999999999864 54443                    121111 1 1456666666


Q ss_pred             HH-----H--HCCCcceecCcchHHHHHHHHHHHHH
Q 004918          173 EG-----W--KLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       173 eA-----~--~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      +.     +  ..|.+|.+++++.   ++...++++.
T Consensus       259 eLGGa~~h~~~sGv~d~~~~de~---~a~~~~R~ll  291 (569)
T PLN02820        259 DLGGADVHCKVSGVSDHFAQDEL---HALAIGRNIV  291 (569)
T ss_pred             HhCCHHHhcccccccccccCchH---HHHHHHHHHH
Confidence            65     2  4788888886553   3444444433

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=94.95  E-value=0.02  Score=63.69  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |++|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4699999999999999999999999999999975

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.92  E-value=0.11  Score=60.54  Aligned_cols=95  Identities=20%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (724)
                      .+|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+.     ...+-.|-.+..            +.+  ..++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQL------------ELLRAAGAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCH------------HHHHhcCCc
Confidence            579999999999999999999999999999999988875421     000001111100            011  3468


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +||.||.+++++... ..+...+.+..++-.|++-
T Consensus       464 ~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        464 KAEAIVITCNEPEDT-MKIVELCQQHFPHLHILAR  497 (601)
T ss_pred             cCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence            999999999865443 3444455555555556653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.89  E-value=0.072  Score=57.38  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            579999999999999999999999 899999874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.81  E-value=0.17  Score=56.92  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~  271 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA  271 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            47899999999999999999999999999999999877654

>PRK06153 hypothetical protein; Provisional

Probab=94.79  E-value=0.055  Score=58.32  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      .+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            479999999999999999999998 89999865

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=94.78  E-value=0.071  Score=47.92  Aligned_cols=79  Identities=15%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             ceEEEEc----CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+|||    -+.+|.-+...|.++|++|+.++...+.+                             ..+....++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5799999    58889999999999999999988665321                             12333445543


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEE
Q 004918          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL  419 (724)
Q Consensus       385 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii  419 (724)
                      . ...|+++.++|  .+...++++++...- ...++
T Consensus        52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g-~~~v~   84 (116)
T PF13380_consen   52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG-VKAVW   84 (116)
T ss_dssp             CSST-SEEEE-S---HHHHHHHHHHHHHHT--SEEE
T ss_pred             CCCCCCEEEEEcC--HHHHHHHHHHHHHcC-CCEEE
Confidence            4 68999999998  888888998887763 33444

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.77  E-value=0.068  Score=55.61  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||.|.. |.++|..|.+.|..|+++......+.                                     +.+++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~-------------------------------------~~~~~  201 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLA-------------------------------------AHTRQ  201 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHH-------------------------------------HHhhh
Confidence            68999999877 99999999999999998764322111                                     34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ||+||.|++-.     .++..  ..+++++++++..
T Consensus       202 ADIVV~avG~~-----~~i~~--~~ik~gavVIDVG  230 (285)
T PRK14189        202 ADIVVAAVGKR-----NVLTA--DMVKPGATVIDVG  230 (285)
T ss_pred             CCEEEEcCCCc-----CccCH--HHcCCCCEEEEcc
Confidence            99999999832     23332  5678999887644

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.71  E-value=0.042  Score=57.96  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~  342 (724)
                      +++.|+|+|-+|.+++..|+..|.. |++++|+++
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            5789999999999999999999996 999999973

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.67  E-value=0.1  Score=56.44  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=57.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--c
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  383 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  383 (724)
                      |.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+...+..    ...  .+..          ... .+++  .
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~----~~~--~~~~----------~~~-~~~~~~~   64 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVH----PHL--RGLV----------DLV-LEPLDPE   64 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhC----ccc--cccc----------Cce-eecCCHH
Confidence            469999997 99999999999876 677655433322211111100    000  0000          001 1111  1


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      ...++|+|+.|+|..  .-.++..++.   ..++.|+++++...+.
T Consensus        65 ~~~~vD~Vf~alP~~--~~~~~v~~a~---~aG~~VID~S~~fR~~  105 (343)
T PRK00436         65 ILAGADVVFLALPHG--VSMDLAPQLL---EAGVKVIDLSADFRLK  105 (343)
T ss_pred             HhcCCCEEEECCCcH--HHHHHHHHHH---hCCCEEEECCcccCCC
Confidence            346899999999953  3344444443   3578888999887663

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=94.60  E-value=0.043  Score=60.29  Aligned_cols=40  Identities=25%  Similarity=0.266  Sum_probs=34.3

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      +||.++|+|.||++. +..|.+.|++|+++|++++.+++..
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~   41 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN   41 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence            379999999999865 8888899999999999988766654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.56  E-value=0.12  Score=52.61  Aligned_cols=160  Identities=13%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhh-------------cC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-------------KM  375 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-------------~~  375 (724)
                      ||.|||+|..|+.++..|+..|. +++++|.+.=.......+   .+-+...-|+-..+.+...+             .+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQ---flf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~   77 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQ---FLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK   77 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccc---cCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            68999999999999999999998 788888764222111100   00000011111111111111             11


Q ss_pred             cccccCc--cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE-ecCCCCCHHHHhcccCCCCCEEEEecCCCCCC
Q 004918          376 LKGVLDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV  452 (724)
Q Consensus       376 i~~~~~~--~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~  452 (724)
                      +....+.  +-+++.|+||.|+- +.+. +..+.+.....  +..++ +.+.+..- ...-..+........++..+...
T Consensus        78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~  152 (234)
T cd01484          78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN  152 (234)
T ss_pred             CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence            1111111  34688999999974 4444 33333332222  23333 33333221 11111111112223334334344


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHH
Q 004918          453 MPLLEIVRTERTSAQVILDLMTVGK  477 (724)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~  477 (724)
                      .|...+-..+.+.+-.+++++.++.
T Consensus       153 ~p~Cti~~~P~~~~hci~~a~~~~~  177 (234)
T cd01484         153 FPMCTIASMPRLPEHCIEWARMLQW  177 (234)
T ss_pred             CCccccCCCCCCchHHHHHHHHHHh
Confidence            5666777777778888888888875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.44  E-value=0.087  Score=54.90  Aligned_cols=40  Identities=20%  Similarity=0.014  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+|-.+.+++..|++.|. +|++++|++++.+...
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            479999999999999999999997 5999999998776643

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.38  E-value=0.073  Score=56.02  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  342 (724)
                      +++.|||+|-.+++++..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            579999999999999999999887 8999999965

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.32  E-value=0.91  Score=47.76  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=55.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHhhcCcccccCccCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~  385 (724)
                      -||+|||+|.+|......+.+. +.++. ++|++++.......         .+.|.-. ....+..+.       ...+
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~   68 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF   68 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence            4799999999999977777654 55654 67998864321111         1112110 011111110       0124


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (724)
                      .+.|+|+++.+.  ..-.+....+   ...++.++++++..
T Consensus        69 ~dIDiVf~AT~a--~~H~e~a~~a---~eaGk~VID~sPA~  104 (302)
T PRK08300         69 DDIDIVFDATSA--GAHVRHAAKL---REAGIRAIDLTPAA  104 (302)
T ss_pred             CCCCEEEECCCH--HHHHHHHHHH---HHcCCeEEECCccc
Confidence            679999999983  3333443333   34677777777654

>PLN03075 nicotianamine synthase; Provisional

Probab=94.30  E-value=0.34  Score=50.75  Aligned_cols=101  Identities=18%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cC---
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD---  381 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---  381 (724)
                      -++|+.||+|..|.+-...++..  +-.++.+|++++.++.+++.+.+.      .+ +        ..++++. .|   
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence            37899999999877655444443  346999999999998877544210      11 0        1223332 11   


Q ss_pred             -ccCcCCCCEEEEcccC--ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          382 -YSEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       382 -~~~~~~aDlVIeav~e--~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                       .....+.|+|+..+-=  +..-++.+++.+.+.++++.+++.-+
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence             1235689999988621  23678899999999999999887554

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.03  E-value=0.15  Score=53.05  Aligned_cols=32  Identities=34%  Similarity=0.436  Sum_probs=25.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHH-CCCcEEE-EeCC
Q 004918          309 RKVAVIG-GGLMGSGIATAHIL-NNIYVVL-KEVN  340 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~-~G~~V~l-~d~~  340 (724)
                      .||+|+| +|.||..++..+.+ .+++++. +|++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            4899999 59999999999986 4777555 6743

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.98  E-value=0.11  Score=45.64  Aligned_cols=73  Identities=19%  Similarity=0.409  Sum_probs=50.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~~  386 (724)
                      ++|.|||+|.+|..=+..|.+.|.+|+++..+.+..+                +            .++.. ..+ +.+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~   59 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD   59 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence            6899999999999999999999999999998861111                1            11111 111 4688


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELE  410 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~  410 (724)
                      ++|+||.|. ++..+.+.+++...
T Consensus        60 ~~~lV~~at-~d~~~n~~i~~~a~   82 (103)
T PF13241_consen   60 GADLVFAAT-DDPELNEAIYADAR   82 (103)
T ss_dssp             TESEEEE-S-S-HHHHHHHHHHHH
T ss_pred             hheEEEecC-CCHHHHHHHHHHHh
Confidence            999999776 46666666665543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.96  E-value=0.26  Score=57.69  Aligned_cols=94  Identities=14%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (724)
                      ++|-|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+.     ...+-.|-.+..            +-+  ..++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~  463 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGAA  463 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCCC
Confidence            689999999999999999999999999999999998876431     000111111100            011  3467


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      ++|+||.++.++.. ...+...+.+..++-.|++
T Consensus       464 ~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        464 KAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             cCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence            89999999864443 3344444555444444554

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.91  E-value=0.1  Score=53.06  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999998 788887653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.88  E-value=0.28  Score=50.50  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|+|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            68999987 9999999999999999999999998766554

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.85  E-value=0.13  Score=53.54  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=52.6

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||.| ..|.++|..|.+.|..|+++......+.                                     +.++.
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            689999998 9999999999999999999865432221                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ||+||.|+.-..-+..       ..+++++++++..
T Consensus       201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG  229 (285)
T PRK14191        201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG  229 (285)
T ss_pred             CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence            9999999963322222       3458899887643

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=93.84  E-value=0.2  Score=55.30  Aligned_cols=163  Identities=13%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC------cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcC------cc
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM------LK  377 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~------i~  377 (724)
                      ||.|||+|.+|+.++..|+..|.      +++++|.+.=.......+   .+-+...-|+-..+.+...+..      +.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQ---fLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQ---FLFRPHDVGKPKSEVAAAAVKAMNPDLKIT   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcC---ccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence            68999999999999999999998      899999754221111100   0000001111111111111111      11


Q ss_pred             ccc--------C---ccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEec
Q 004918          378 GVL--------D---YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  446 (724)
Q Consensus       378 ~~~--------~---~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~  446 (724)
                      ...        +   .+-+++.|+||.|+- +.+....+-+.....-  -.+|-+.+.+..-. .....+..........
T Consensus        78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~--iPli~~gt~G~~G~-v~v~iP~~te~y~~~~  153 (435)
T cd01490          78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYYR--KPLLESGTLGTKGN-TQVVIPHLTESYSSSR  153 (435)
T ss_pred             EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhC--CCEEEEecccceeE-EEEEeCCCCCCccCCC
Confidence            100        0   122577999999974 4554443333332221  12333333332111 1111111001111122


Q ss_pred             CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc
Q 004918          447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKII  479 (724)
Q Consensus       447 ~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~l  479 (724)
                      ..|....|..++-..+...+-.+++++.+++.+
T Consensus       154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l  186 (435)
T cd01490         154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL  186 (435)
T ss_pred             CCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence            223334566667777778888999999998864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.84  E-value=0.46  Score=47.73  Aligned_cols=130  Identities=21%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||+|.++..=+..|++.|.+|+++..+-. .+..           +.+.+.++         .+.-.-..+.+.+
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i~---------~~~r~~~~~dl~g   85 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNLK---------LIKGNYDKEFIKD   85 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCEE---------EEeCCCChHHhCC
Confidence            4899999999999999999999999999965432 1111           12222221         1110111246789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (724)
                      +++||.|+ +|.++-+.+.+...    ...+++.+......               ..|+.|.  ..++++..|.+.+.+
T Consensus        86 ~~LViaAT-dD~~vN~~I~~~a~----~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~G~s  145 (223)
T PRK05562         86 KHLIVIAT-DDEKLNNKIRKHCD----RLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTKGGS  145 (223)
T ss_pred             CcEEEECC-CCHHHHHHHHHHHH----HcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECCCcC
Confidence            99999986 47776666655433    32333333222111               1233332  344566666666677


Q ss_pred             HHHHHHHHHHHHH
Q 004918          466 AQVILDLMTVGKI  478 (724)
Q Consensus       466 ~e~~~~~~~l~~~  478 (724)
                      |.....++.-++.
T Consensus       146 P~lar~lR~~ie~  158 (223)
T PRK05562        146 PKTSVFIGEKVKN  158 (223)
T ss_pred             cHHHHHHHHHHHH
Confidence            7666665555543

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.83  E-value=0.14  Score=52.32  Aligned_cols=98  Identities=16%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-----------CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc-
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-  376 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i-  376 (724)
                      .||.|||+|..|+.++..|++.|           .+++++|.+.=.......+    +-....-|+-..+.+...+..+ 
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ----lf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ----AFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc----cCChhHCCcHHHHHHHHHHHhcc
Confidence            58999999999999999999874           2899999753221111110    0001112222222122212111 


Q ss_pred             ----cccc----CccCcCCCCEEEEcccCChHHHHHHHHHHHh
Q 004918          377 ----KGVL----DYSEFKDVDMVIEAVIESVPLKQKIFSELEK  411 (724)
Q Consensus       377 ----~~~~----~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~  411 (724)
                          ....    ..+.+.++|+||.|+- +...+..+.+....
T Consensus        88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~  129 (244)
T TIGR03736        88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG  129 (244)
T ss_pred             CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                1111    0123567999999984 67777777666554

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK12828 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.11  Score=52.42  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=34.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++...+.
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT   47 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence            57889987 9999999999999999999999998765543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.81  E-value=0.19  Score=51.01  Aligned_cols=33  Identities=30%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            579999999999999999999998 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.80  E-value=1  Score=44.94  Aligned_cols=130  Identities=23%  Similarity=0.234  Sum_probs=79.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||.|..|.-=+..|++.|-+|+++..+. +.+..           +.+.+.+.         .+.-.-+.+.+.+
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~---------~~~~~~~~~~~~~   72 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIK---------WIEREFDAEDLDD   72 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcc---------hhhcccChhhhcC
Confidence            689999999999999999999999999998766 22222           22223222         1111122355677


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (724)
                      +++||.|+. |.++.+.+++...+.    .+++ |....           |+.   ..|+.|.  ...++...|.+.+.+
T Consensus        73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~-----------p~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDD-----------PEL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCC-----------ccc---CceecceeeccCCeEEEEECCCCC
Confidence            999999875 677777777665443    2333 22221           111   2333333  445566667777777


Q ss_pred             HHHHHHHHHHHHH
Q 004918          466 AQVILDLMTVGKI  478 (724)
Q Consensus       466 ~e~~~~~~~l~~~  478 (724)
                      |.....++.-.+.
T Consensus       133 P~la~~ir~~Ie~  145 (210)
T COG1648         133 PVLARLLREKIEA  145 (210)
T ss_pred             hHHHHHHHHHHHH
Confidence            7766666665554

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=93.77  E-value=0.63  Score=48.76  Aligned_cols=87  Identities=14%  Similarity=0.040  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +.++|+|.|.+|+..|.++...|..|+.||.= +.....+             .             .++..+-.|.+..
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~  200 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK  200 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence            68999999999999999999999999999853 3322211             1             1233333367889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ||+|-.-+|-.++.++-+-.+....++.+.-|+.
T Consensus       201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN  234 (406)
T KOG0068|consen  201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIIN  234 (406)
T ss_pred             cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEE
Confidence            9999999998888877776777777888887653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=93.73  E-value=0.12  Score=49.22  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||-+ ..|.+++..|.+.|..|++++...+.++                                     +.++.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence            789999986 6999999999999999999886643322                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ||+||.|+.-.--++       .+.+++++++++....
T Consensus        80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred             ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence            999999997433332       2357889988865443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=93.71  E-value=0.73  Score=46.82  Aligned_cols=149  Identities=15%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -++..-.=+.|..+++.+-.+ .+.+|+++..|+     +-.+|-.-     ...++.. ....+ .++..-..|.|+.+
T Consensus       136 GSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l-----SLMQMak-tsaAl-~~l~ea~lpyIsVL  202 (294)
T COG0777         136 GSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL-----SLMQMAK-TSAAL-KRLSEAGLPYISVL  202 (294)
T ss_pred             cchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH-----HHHHHHH-HHHHH-HHHHhcCCceEEEe
Confidence            567777778888888888765 478888887653     22221000     0111111 11234 45778899999999


Q ss_pred             Cccccch-hHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceec
Q 004918          106 EGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV  184 (724)
Q Consensus       106 ~G~a~Gg-G~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv  184 (724)
                      ..+..|| -..+++..|+.||.+.|.+||...++=       -+.+...++..          --+++-.++.|+||.||
T Consensus       203 t~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LPeg----------fQ~aEfLlehG~iD~iv  265 (294)
T COG0777         203 TDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLPEG----------FQTAEFLLEHGMIDMIV  265 (294)
T ss_pred             cCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCCcc----------hhhHHHHHHcCCceeee
Confidence            9999998 579999999999998888876543310       01111111111          22577788999999999


Q ss_pred             CcchHHHHHHHHHHHHHccC
Q 004918          185 TSEELLKVSRLWALDIAARR  204 (724)
Q Consensus       185 ~~~~l~~~a~~~a~~la~~~  204 (724)
                      +..++......+...+...+
T Consensus       266 ~R~elr~tla~ll~~~~~~~  285 (294)
T COG0777         266 HRDELRTTLASLLAKLTPQP  285 (294)
T ss_pred             cHHHHHHHHHHHHHHhCCCC
Confidence            99999888777776655444

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.70  E-value=0.17  Score=47.04  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|+|- ...|..+|..|.+.|..|++++.+...++                                     +.+++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~   71 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD   71 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            68999988 67899999999999999999986543222                                     24678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.++.-...++.       +.+++++++++...
T Consensus        72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~  101 (140)
T cd05212          72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP  101 (140)
T ss_pred             CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence            9999999975433332       34789998875443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.61  E-value=0.15  Score=51.60  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+ |.+|..++..|++.|++|++.+|+++.++...
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA   47 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence            57888886 99999999999999999999999987766543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.48  E-value=0.14  Score=52.58  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999997 788888653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.47  E-value=0.053  Score=58.92  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 799998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.44  E-value=0.22  Score=56.69  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       296 ~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      |+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus         5 ~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438          5 PGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             cchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            444444432 2346899999999999999999999999999997654

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.39  E-value=0.51  Score=53.67  Aligned_cols=166  Identities=17%  Similarity=0.140  Sum_probs=99.5

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.-|+|..  -+++++-.+...+++..+++. ++-+|.|.-. +.|..|-+-+          .....+...+++ .++.
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~~-~a~~  364 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARLL-YALA  364 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHHH-HHHH
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec-ccccccchhh----------hcchHHHHHHHH-HHHH
Confidence            44466643  379999999999999988863 6777777533 2354443321          222345555677 7799


Q ss_pred             cCCCcEEEEECccccchhHHHHhhc----CEEEEeCCceeeCcccccCccCCcchhhhhcccc-------c--HH-HHHH
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LS-KAIE  161 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalac----D~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~-------G--~~-~a~~  161 (724)
                      .++.|+|..|-|.+.|||......+    |+++|.++++++       .+++-+.+..+-+.-       |  .. ...+
T Consensus       365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~  437 (493)
T PF01039_consen  365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE  437 (493)
T ss_dssp             HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred             cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence            9999999999999999887555555    788777777766       443333333222110       0  00 0111


Q ss_pred             HH-H-cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc
Q 004918          162 MM-L-LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (724)
Q Consensus       162 l~-l-tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (724)
                      ++ - .-+..++..+...|++|.|+++.+..........-+.++
T Consensus       438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~  481 (493)
T PF01039_consen  438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK  481 (493)
T ss_dssp             HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence            11 1 122258899999999999999999887776666544443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.37  E-value=0.06  Score=59.05  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      +||.|||+|..|+.++..|++.|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            479999999999999999999998 79999987

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.36  E-value=0.4  Score=50.75  Aligned_cols=146  Identities=19%  Similarity=0.217  Sum_probs=79.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      .||||+|+ |..|.-+...|.+..++   +.++......-++..+        ..... +         .-.....+...
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~~~-~---------~v~~~~~~~~~   63 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGGKS-I---------GVPEDAADEFV   63 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccCcc-c---------cCccccccccc
Confidence            58999988 99999999999997553   4444332222111000        00000 0         00011133456


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCee---eEecC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT  461 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv---eii~~  461 (724)
                      .+++|+|+-|.+  .++-+++..++.+   .++++++|+|...+..-....        +--.||-++...-   -|+.+
T Consensus        64 ~~~~Divf~~ag--~~~s~~~~p~~~~---~G~~VIdnsSa~Rm~~DVPLV--------VPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          64 FSDVDIVFFAAG--GSVSKEVEPKAAE---AGCVVIDNSSAFRMDPDVPLV--------VPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             cccCCEEEEeCc--hHHHHHHHHHHHH---cCCEEEeCCcccccCCCCCEe--------cCCcCHHHHHhhhhCCCEEEC
Confidence            779999999998  4444666666543   679999999987665211111        1111211111000   24444


Q ss_pred             CC-CCHHHHHHHHHHHHHcCCeeEE
Q 004918          462 ER-TSAQVILDLMTVGKIIKKVPVV  485 (724)
Q Consensus       462 ~~-t~~e~~~~~~~l~~~lGk~~v~  485 (724)
                      ++ +....+-.+.++.+..|-.-|.
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~  155 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVV  155 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEE
Confidence            43 3456666777788777744333

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.34  E-value=0.064  Score=58.51  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            479999999999999999999997 89999987

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.32  E-value=0.23  Score=51.57  Aligned_cols=72  Identities=15%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||-+ ..|.++|..|...|..|+.+..+...+.                                     +.+++
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence            689999998 9999999999999999999987654322                                     24578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.|++-..-+..       ..+++++++++...
T Consensus       196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi  225 (279)
T PRK14178        196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGI  225 (279)
T ss_pred             CCEEEECCCcccccCH-------HHcCCCcEEEEeec
Confidence            9999999973322222       23589999886543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.31  E-value=0.51  Score=53.75  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=32.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            68999999999999999999999999999987654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.25  E-value=0.21  Score=52.05  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=52.9

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||-+. .|.++|..|.+.|..|+++......+.                                     +.++.
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  202 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN  202 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999976532211                                     24678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ||+||.++.-..-+..       ..+++++++++..
T Consensus       203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG  231 (285)
T PRK10792        203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG  231 (285)
T ss_pred             CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence            9999999942122222       5678999887643

>PRK08223 hypothetical protein; Validated

Probab=93.19  E-value=0.24  Score=51.68  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|-+|+.++..|+.+|. +++++|.+.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999998 788998764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.17  E-value=0.31  Score=52.91  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  349 (724)
                      +|.|+|+|.+|.-.++.+...|. +|++.|+++++++.+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            79999999999998888888885 78888999999988754

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.17  E-value=0.14  Score=52.38  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  342 (724)
                      .||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            579999999999999999999997 7888887653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.10  E-value=0.36  Score=52.10  Aligned_cols=106  Identities=13%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh-hcCcccccCc-cC
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-SE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~~  384 (724)
                      .||+|+|+|.||..++..+... +++|+. .|++++......+..  .++   -.+... ...... -..+....+. +.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence            5899999999999999988764 567655 465654333221110  000   000000 000000 0123333344 34


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +.++|+||+|.|.  ..-.+.....   +..++.++++++.
T Consensus        76 ~~~vDVVIdaT~~--~~~~e~a~~~---~~aGk~VI~~~~~  111 (341)
T PRK04207         76 LEKADIVVDATPG--GVGAKNKELY---EKAGVKAIFQGGE  111 (341)
T ss_pred             hccCCEEEECCCc--hhhHHHHHHH---HHCCCEEEEcCCC
Confidence            5789999999983  3333444333   3345666666664

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=93.10  E-value=0.56  Score=41.24  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc---
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY---  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  382 (724)
                      .+|--||+|.  +.++..+++  .|.+|+.+|.+++.++.+.++...       .+         ...++++. .+.   
T Consensus         3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~---------~~~~i~~~~~d~~~~   64 (112)
T PF12847_consen    3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EG---------LSDRITFVQGDAEFD   64 (112)
T ss_dssp             CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TT---------TTTTEEEEESCCHGG
T ss_pred             CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cC---------CCCCeEEEECccccC
Confidence            5789999998  344444555  899999999999999988765411       11         01233221 122   


Q ss_pred             -cCcCCCCEEEEcc-----cCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          383 -SEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       383 -~~~~~aDlVIeav-----~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                       +.....|+|+..-     .-..+..+.+++++.+.++|+..++.+
T Consensus        65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence             3445689999866     112255678889999999988877543

...

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=93.08  E-value=0.11  Score=56.91  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      +++||+|+|+ |..|..+...|..+ +++|+.+.++..+-+....    ... .+..+...         .+. ..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~----~~~-~l~~~~~~---------~~~-~~~~~~  101 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS----VFP-HLITQDLP---------NLV-AVKDAD  101 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh----hCc-cccCcccc---------cee-cCCHHH
Confidence            4569999999 99999999999988 7799998775443211110    000 00001000         000 011133


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      ++++|+||.|+|  ...-.++...+    ..++.|+++++.....
T Consensus       102 ~~~~DvVf~Alp--~~~s~~i~~~~----~~g~~VIDlSs~fRl~  140 (381)
T PLN02968        102 FSDVDAVFCCLP--HGTTQEIIKAL----PKDLKIVDLSADFRLR  140 (381)
T ss_pred             hcCCCEEEEcCC--HHHHHHHHHHH----hCCCEEEEcCchhccC
Confidence            688999999998  44445555544    3568888888876554

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.05  E-value=0.47  Score=54.26  Aligned_cols=41  Identities=15%  Similarity=0.060  Sum_probs=35.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      +.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...+
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            46778887 999999999999999999999999988766544

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.01  E-value=0.21  Score=51.71  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .+|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            579999999999999999999994 899999764

>PLN00016 RNA-binding protein; Provisional

Probab=93.00  E-value=0.25  Score=54.32  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             CcceEEEE----cC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          307 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       307 ~~~kI~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      .++||.|+    |+ |.+|..++..|.+.||+|++++|+++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            34789999    76 999999999999999999999998765

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.00  E-value=0.16  Score=54.19  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      ||.|.|+ |.+|+.++..|.+.||+|++.+|+++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            7999996 9999999999999999999999997643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.00  E-value=0.91  Score=51.10  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=32.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      -++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3689999999999999999999999999999986

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=92.98  E-value=0.29  Score=51.68  Aligned_cols=88  Identities=22%  Similarity=0.211  Sum_probs=61.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +++.|.|.|-.|.++|..+.-.|.+|++++++|-.+-++.                        ++.....+-.+++..+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence            5788889999999999999999999999999997543321                        1223333333677889


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      |++|.|.-..--+..+    ....+++++|++ |...
T Consensus       266 DifiT~TGnkdVi~~e----h~~~MkDgaIl~-N~GH  297 (420)
T COG0499         266 DIFVTATGNKDVIRKE----HFEKMKDGAILA-NAGH  297 (420)
T ss_pred             CEEEEccCCcCccCHH----HHHhccCCeEEe-cccc
Confidence            9999998643333333    334467787764 5443

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=92.93  E-value=0.2  Score=54.30  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=58.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCcc-
Q 004918          309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYS-  383 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-  383 (724)
                      .||+|||+ |.+|..+...|.++ +++++ +++.+...-+...+    ..      +.+..     . ....+. .+.+ 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~~------~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----VH------PHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----hC------ccccc-----c-CCceeecCCHHH
Confidence            37999999 99999999999977 66777 55655432111110    00      00000     0 001111 1222 


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      .+.++|+||.|+|.  ..-.++..++.   ..++.|+++++...+.
T Consensus        65 ~~~~~DvVf~alP~--~~s~~~~~~~~---~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        65 IAEDADVVFLALPH--GVSAELAPELL---AAGVKVIDLSADFRLK  105 (346)
T ss_pred             hhcCCCEEEECCCc--hHHHHHHHHHH---hCCCEEEeCChhhhcC
Confidence            23589999999994  34445555543   3578888988876654

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=92.93  E-value=0.39  Score=46.92  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc--cC---
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---  381 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---  381 (724)
                      -++|+|||- ...|.++|..|.+.|..|+++|++.-..-.             ..+.+          +-+.+  .+   
T Consensus        62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~  118 (197)
T cd01079          62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEA  118 (197)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhh
Confidence            378999998 577999999999999999999876432210             00000          00001  11   


Q ss_pred             -c-cCcCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          382 -Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       382 -~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                       + +.++.||+||.|++-.-- ++.       +.+++++++++....
T Consensus       119 ~l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~  158 (197)
T cd01079         119 MTLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASI  158 (197)
T ss_pred             HHHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCC
Confidence             2 457899999999973332 333       346789998875544

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=92.92  E-value=0.085  Score=58.65  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999754

>cd05295 MDH_like Malate dehydrogenase-like

Probab=92.86  E-value=0.25  Score=54.83  Aligned_cols=100  Identities=14%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILN---NI----YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      -+|+|-|+ |.+|-++...+++.   |.    .++++|+  +.+.++...-+++.....              .+..+..
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~p--------------ll~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFP--------------LLRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHh--------------hcCCcEE
Confidence            36999988 89999998888874   43    5788999  566655443333332111              1122222


Q ss_pred             -ccCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCC-CcEEEec
Q 004918          379 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPP-HCILATN  422 (724)
Q Consensus       379 -~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~-~~ii~s~  422 (724)
                       +++++++++||+||.+.-              .+..+.+++.+.|.++.++ ..|++..
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~  249 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAG  249 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence             455689999999998762              1334555666677777763 3444433

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.83  E-value=0.24  Score=51.49  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++.++...
T Consensus         6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   46 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA   46 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 89999999999999999999999998876543

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.82  E-value=0.23  Score=50.53  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=35.4

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      +++++.|.|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL   46 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4578889986 9999999999999999999999998765543

>PRK05868 hypothetical protein; Validated

Probab=92.81  E-value=0.081  Score=57.99  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      |++|.|||+|.-|...|..|++.|++|+++|++++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            578999999999999999999999999999988653

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=92.79  E-value=0.17  Score=51.34  Aligned_cols=31  Identities=29%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEE-EEeC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV  339 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~  339 (724)
                      ++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            689999999999999999999999998 6677

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.77  E-value=0.28  Score=50.67  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             cceEEEEcC-C-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          308 VRKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       308 ~~kI~VIG~-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      -+++.|.|+ | .+|.+++..|++.|++|++.+++++.++...+.+
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~   62 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL   62 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            367889997 6 5999999999999999999999988877665444

>PRK07236 hypothetical protein; Provisional

Probab=92.72  E-value=0.11  Score=57.29  Aligned_cols=37  Identities=24%  Similarity=0.075  Sum_probs=33.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ++..+|.|||+|.-|...|..|++.|++|+++++++.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4457899999999999999999999999999999864

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.66  E-value=0.22  Score=50.80  Aligned_cols=40  Identities=25%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++..+...
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~   47 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA   47 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57888887 99999999999999999999999987665543

>PRK08328 hypothetical protein; Provisional

Probab=92.65  E-value=0.11  Score=53.00  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~  343 (724)
                      .||.|||+|..|+.++..|++.|. +++++|.+.-.
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE   63 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence            479999999999999999999998 79999876533

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=92.64  E-value=0.046  Score=56.99  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      ||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            68999999999999999999998 68888854

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.59  E-value=0.28  Score=51.07  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||-+. .|.++|..|.+.|..|+++......+.                                     +.+++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  207 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD  207 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999984332111                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.|+.-.--+.       ...+++++++++..+
T Consensus       208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGi  237 (287)
T PRK14176        208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGI  237 (287)
T ss_pred             CCEEEEccCCccccC-------HHHcCCCcEEEEecc
Confidence            999999875222222       235789999886544

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=92.58  E-value=0.098  Score=42.09  Aligned_cols=30  Identities=27%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             EEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          313 VIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       313 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      |||+|.-|.+.|..|++.|++|++++++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998764

...

>PRK08267 short chain dehydrogenase; Provisional

Probab=92.53  E-value=0.18  Score=51.94  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=35.1

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      |++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   41 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL   41 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            467889986 9999999999999999999999998876654

>PRK06196 oxidoreductase; Provisional

Probab=92.53  E-value=0.29  Score=52.17  Aligned_cols=42  Identities=14%  Similarity=0.186  Sum_probs=35.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus        27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~   69 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG   69 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56788887 8999999999999999999999998877665443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.47  E-value=0.34  Score=49.34  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+ |.+|..++..|++.|++|++.+|+++..+...
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~   46 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA   46 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57899987 89999999999999999999999997765543

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.46  E-value=2.2  Score=44.52  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH-hhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~~~  386 (724)
                      ..|+|.|+|..|.+.++-...+|. +++.+|+|+++.+.+.+--.        ..-+.+.+... ..+.|.--++    .
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa--------Te~iNp~d~~~~i~evi~EmTd----g  261 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA--------TEFINPKDLKKPIQEVIIEMTD----G  261 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc--------ceecChhhccccHHHHHHHHhc----C
Confidence            579999999999999999988887 79999999999888753100        00111111111 1111211111    6


Q ss_pred             CCCEEEEcccCChHHHHHHHHHH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSEL  409 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l  409 (724)
                      +.|+-+||+- +.++.++-+...
T Consensus       262 GvDysfEc~G-~~~~m~~al~s~  283 (375)
T KOG0022|consen  262 GVDYSFECIG-NVSTMRAALESC  283 (375)
T ss_pred             CceEEEEecC-CHHHHHHHHHHh
Confidence            7899999986 566655555443

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.40  E-value=0.19  Score=54.09  Aligned_cols=93  Identities=20%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcE---EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc-Ccc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS  383 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~  383 (724)
                      .||+|||+ |..|..+...|.+.||++   ....++.+.-+...          . .+           ..+...+ +..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----------~-~g-----------~~i~v~d~~~~   59 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----------F-KG-----------KELKVEDLTTF   59 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----------e-CC-----------ceeEEeeCCHH
Confidence            58999998 999999999999988864   55554433211110          0 00           0111111 113


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      .++++|+||.|+|  ...-+++..++.   ..+++|+++++....
T Consensus        60 ~~~~vDvVf~A~g--~g~s~~~~~~~~---~~G~~VIDlS~~~R~   99 (334)
T PRK14874         60 DFSGVDIALFSAG--GSVSKKYAPKAA---AAGAVVIDNSSAFRM   99 (334)
T ss_pred             HHcCCCEEEECCC--hHHHHHHHHHHH---hCCCEEEECCchhhc
Confidence            4578999999998  555566665543   356788888876644

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.34  E-value=0.33  Score=48.81  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      ++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            689999999999999999999988 566678876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.33  E-value=1  Score=47.17  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +.|-|||+|+-|+--|..+++.|++|.+++-.+.+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            56999999999999999999999999999987764

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.30  E-value=0.27  Score=51.89  Aligned_cols=41  Identities=15%  Similarity=0.154  Sum_probs=35.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57888887 999999999999999999999999887766543

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.30  E-value=0.29  Score=50.28  Aligned_cols=41  Identities=24%  Similarity=0.143  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   47 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAA   47 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            56888876 899999999999999999999999887665443

>PRK06057 short chain dehydrogenase; Provisional

Probab=92.29  E-value=0.25  Score=50.73  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      -++|.|+|+ |.+|..++..|++.|++|++.++++...+..
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~   47 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA   47 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            367999988 9999999999999999999999998765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	724
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		0.0
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		8e-90
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		1e-89
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		7e-89
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		1e-78
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		2e-55
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		2e-44
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		5e-40
3had_A	308	Biochemical Characterization And Structure Determin		2e-32
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		3e-32
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		4e-32
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		5e-32
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		7e-32
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		7e-32
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		7e-32
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		1e-31
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		1e-31
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		7e-29
2hdh_A	293	Biochemical Characterization And Structure Determin		3e-24
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		4e-24
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		9e-18
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		1e-17
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		2e-16
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-15
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-15
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-15
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-15
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		9e-15
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		9e-15
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		9e-15
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-14
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		6e-14
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		7e-14
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		2e-12
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		6e-12
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		4e-11
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		8e-11
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		1e-10
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-10
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		1e-10
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-10
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		2e-10
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		2e-10
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-10
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		2e-09
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-09
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		3e-09
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		4e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		5e-09
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		7e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		1e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-08
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-08
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		5e-08
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		6e-08
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-08
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		1e-07
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-07
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		2e-07
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		5e-07
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		6e-07
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		1e-06
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		2e-06
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		4e-06
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		7e-06
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		7e-06
4hc8_A	255	Crystal Structure Of Probable Enoyl-Coa Hydratase E		7e-06
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		8e-06
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-06
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		9e-06
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-05
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-05
1wz8_A	264	Crystal Structure Of Probable Enoyl-Coa Dehydratase		2e-05
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		5e-05
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		5e-05
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		6e-05
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		9e-05
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-04
3r6h_A	233	Crystal Structure Of An Enoyl-Coa Hydratase (Echa3)		1e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		1e-04
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		2e-04
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-04
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-04
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		2e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		3e-04
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		3e-04
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		4e-04
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		4e-04
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		5e-04
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-04
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		5e-04
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		5e-04
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-04
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-04
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		7e-04
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		7e-04
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		7e-04

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/707 (55%), Positives = 512/707 (72%), Gaps = 5/707 (0%)
Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
           ARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
                 NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545
Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
           VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605
Query: 602 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 661
           + R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM FP
Sbjct: 606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665
Query: 662 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708
            YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+
Sbjct: 666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGV 712

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  328 bits (840), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 224/718 (31%), Positives = 360/718 (50%), Gaps = 49/718 (6%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 16  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 72
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 73  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 127
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
           E+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 128 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 187
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 188 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 237
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 238 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 297
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 298 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 356
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 357 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 415
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 416 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 475
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 476 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 535
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 591
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 536 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 595
Query: 592 PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 651
           PDP +   + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D
Sbjct: 596 PDPWLSTFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 651
Query: 652 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 707
              + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 652 VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 709

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  327 bits (839), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 224/718 (31%), Positives = 360/718 (50%), Gaps = 49/718 (6%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
           E+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 591
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 610
Query: 592 PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 651
           PDP +   + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D
Sbjct: 611 PDPWLSTFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 666
Query: 652 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 707
              + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 667 VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 724

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  325 bits (832), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 223/718 (31%), Positives = 359/718 (50%), Gaps = 49/718 (6%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 191
            +TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 AVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 192 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 304
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 484
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 485 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 543
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 544 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 591
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 610
Query: 592 PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 651
           PDP +   + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D
Sbjct: 611 PDPWLSTFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 666
Query: 652 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 707
              + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 667 VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 724

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  290 bits (743), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 203/677 (29%), Positives = 327/677 (48%), Gaps = 37/677 (5%)
Query: 49  VKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-DVSVELVVNLIEDCKKPIXXXXXX 107
           VK ++++     F  G DI  F +     D  L+  ++    + +  ED   P       
Sbjct: 53  VKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAING 112
Query: 108 XXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK 167
                     +    R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K
Sbjct: 113 IALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGK 172
Query: 168 SITSEEGWKLGLIDAVVTSE-------ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
              +E+  K+  +DAVVT++       +L+K +    LD  A+R+P +  L    KL ++
Sbjct: 173 ENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL----KLNAI 228
Query: 221 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSR 280
            +           A +  PN P     +  I++    G    +  EA  F +L     S 
Sbjct: 229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASN 288
Query: 281 GLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340
            L+ +F   +   K   V D   K   V++ AV+G G+MG GIA         +++K++N
Sbjct: 289 CLIGLFLNDQELKKKAKVYDKIAKD--VKQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 346
Query: 341 SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400
              + +G+      + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  
Sbjct: 347 EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPK 406
Query: 401 LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR 460
           +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R
Sbjct: 407 VKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466
Query: 461 TERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDS 520
            E++S   +   +              +C GF VNR  FPY      LVS GVD  RID 
Sbjct: 467 GEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDK 526
Query: 521 AIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANG 578
            +  FG P+GP  L+D+ G            + FPDR    +   +D L ++ R G+ NG
Sbjct: 527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNG 586
Query: 579 KGLYTYEKGSKPKP----DPSVL----PIIEECRRLSNIMPGGKPISVTEKEIVEMILFP 630
           KG Y YE   K K     D SVL    PI+ E R             VT+++I+  ++ P
Sbjct: 587 KGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQR------------DVTDEDIINWMMIP 634
Query: 631 VVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLY 690
           +  E+ R LE+GIV  A++ D   V G+ FP +RGG + + D++G         ++++L 
Sbjct: 635 LCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL- 693
Query: 691 GNFFKPSRFLEERATKG 707
           G  + P+  L E A  G
Sbjct: 694 GALYHPTAKLREMAKNG 710

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  213 bits (543), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 220/447 (49%), Gaps = 24/447 (5%)
Query: 279 SRGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVV 335
           ++ L + FFA+++ +K    +    K    + V  V V+G G MG GIA +     I VV
Sbjct: 5   AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 64
Query: 336 LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 395
             E + + L    K I   +    +R    Q+   +A   L+      E   VD+V+EAV
Sbjct: 65  AVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAV 122
Query: 396 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL 455
            E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM L
Sbjct: 123 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 182
Query: 456 LEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDV 515
           LE++ +  +S   I  +M+             NC GF  NR   PY      L+  G   
Sbjct: 183 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 242
Query: 516 FRIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLV 564
             +D  +  FG  +GPF++ DLAG  V          T        P R    S  SPL 
Sbjct: 243 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 302
Query: 565 DLLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKE 622
           D+L ++GR G+  GKG Y Y+K  G   KPDP +   + + R + +I    +  +++++E
Sbjct: 303 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEE 358
Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
           I+E  L+ ++NE+ R+LEEG+  R   +D   + G  +P ++GG +F+A +VG   V   
Sbjct: 359 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 418
Query: 683 LKKWSQLYGNF--FKPSRFLEERATKG 707
           L+K+ +   +    +PS +L     +G
Sbjct: 419 LQKYYRQNPDIPQLEPSDYLRRLVAQG 445

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 13/383 (3%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V  VA+IGGG MG  +A    L  I   L   N +   + ++ + A  +          +
Sbjct: 54  VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIE 113
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
           K N  LK+     D+ +  + D+++E+VIE + LK+++F+ LE  C   CI  TNTS++D
Sbjct: 114 KINANLKITS---DFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 487
           LN +         ++G HFF+PA+V+ L+EI+    TS+Q I                  
Sbjct: 171 LNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVG 230
Query: 488 NCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAAT 546
           NC  F  NR    Y  QS +L+   G    +ID  I +FG  +GP  + D+ G+ V    
Sbjct: 231 NCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKL 290
Query: 547 SKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRL 606
            KE +   P+     P+   + +  R G+   KG Y Y+  ++ K + + +  I   RR+
Sbjct: 291 KKE-NGLEPN-----PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQI--IRRV 342
Query: 607 SNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGG 666
           S        I + +++++  +L+P VNE  R +EEG++   S +D   +LG  +P + GG
Sbjct: 343 SQNAKSNIQI-INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGG 401
Query: 667 IVFWADAVGANYVYTSLKKWSQL 689
            + +    G + +   L  WS L
Sbjct: 402 PMRFGKTEGLDKIANMLVHWSSL 424

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  162 bits (411), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 150/281 (53%), Gaps = 4/281 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 487
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L               
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIRS-FGLPIGPFQLLDLAGYGVA-A 544
           +  GF VNR   P YS++ R L         ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 545 ATSKEFDKAFPDRSFQSPLVDL-LLKSGRNGKANGKGLYTY 584
            T   F+  + +R F   LV   L+  GR GK +G G+Y +
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDW 285

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  +M L+E+V+T  TS + +  L+        
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAG 539
                 +  GF VNR   PY  ++ RL          ID+A++   G P+GPF+LLD  G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 540 YGVAAAT---SKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 585
                       E D   P   FQ SP ++ L+   + GK  G+G Y Y+
Sbjct: 255 LDTTKFIIDGWHEMDSQNP--LFQPSPAMNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  135 bits (341), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NT+++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA+++++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+++++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NT ++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 368 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 538
                 +  GF V+R   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 539 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 125/282 (44%), Gaps = 37/282 (13%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            D +A+ TL + P NA +  +   + +  ++    D+++ +V+ G G  FS G DI  F 
Sbjct: 13  EDHIAVATLNHAPANAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFT 72
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
            V  A   + +  +  ++    +E C KP+                  CH R A    +L
Sbjct: 73  SVTEAKQATELAQLG-QVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKL 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           GLPELTLG+IPGF GTQRLPR VG +KA E  L S  IT  E  K GL++ V   E  L 
Sbjct: 132 GLPELTLGLIPGFAGTQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLD 191
Query: 192 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVI 251
            +   A  IA +               S + AR VL+L  LQ  K++             
Sbjct: 192 DTLKVAKQIAGK---------------SPATARAVLEL--LQTTKSSHY----------- 223
Query: 252 EEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293
                   Y GV +EA++F E+   +  R  V  F  +R  S
Sbjct: 224 --------YEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS 257

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 17/273 (6%)
Query: 324 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 381
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 25  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIAT 79
Query: 382 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 437
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 80  STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTR 139
Query: 438 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 497
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 140 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 199
Query: 498 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G          + +  
Sbjct: 200 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 258
Query: 555 PDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYE 585
            +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 259 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 291

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 19/274 (6%)
Query: 324 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 381
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 58  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 112
Query: 382 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 437
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 113 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTR 172
Query: 438 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 497
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 173 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 232
Query: 498 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATS---KEFD 551
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G            E D
Sbjct: 233 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 291
Query: 552 KAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
              P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 292 AENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 324

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 13/203 (6%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I L  P  +NAL   + A + D   +  +  ++ AIV+TG+   F+ G DI     
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADI----- 73
Query: 73  VHGAGDVSLMPDVSVELVV----NLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
              A  V+L P  + E  +    + +   +KPI                M C   IAA  
Sbjct: 74  ---AEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT 130
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            + G PE+TLG++PG GGTQRL R VG +KA+++ L  +S+T+EE  ++GL+  +V + +
Sbjct: 131 ARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD 190
Query: 189 LLKVSRLWALDIAARRKPWIRSL 211
           LL  +   A  IA   +P  R++
Sbjct: 191 LLDEALAVAQRIARMSRPAGRAV 213

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 25/292 (8%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLT 365
           G+  V V+G G++GS IA     +   V   ++N++ L    K  E    GL     K  
Sbjct: 3   GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFE----GLAAVYEKEV 58
Query: 366 QDKANNALKMLKGVLDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
              A+ A +   G + YS+      KD D+VIEAV ES+ LK+ I+++L +  P   I A
Sbjct: 59  AGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA 118
Query: 421 TNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXX 479
           TN+ST +  ++VG  T   D+ +  HF +   V    E++ T +T  +V   ++      
Sbjct: 119 TNSSTLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAI 177
Query: 480 XXX-XXXXXNCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLD 536
                       G+ +N    P    +A LLV    D   ID   R   G P GPF++ D
Sbjct: 178 GMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFD 237
Query: 537 LAG----YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTY 584
           + G    Y +++ +  +       R F + L +  +  G+ G A G+G Y Y
Sbjct: 238 IVGLTTAYNISSVSGPK------QREFAAYLKENYIDKGKLGLATGEGFYRY 283

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 125/281 (44%), Gaps = 29/281 (10%)
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
           KV VIG GL G GIA A I +   VVL++V+        K +EA  R  +    L++ + 
Sbjct: 14  KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSE-------KALEA-AREQIPEELLSKIEF 64
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
              L+ +K         D D+V EAV E +  K ++  E+E+    +  L +NTS I ++
Sbjct: 65  TTTLEKVK---------DCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNC 489
            + E+  S  R +G H+ +P HV PL+EIV +  T ++ +  +                C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 490 TGFA-VNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQLLDLAGYGVAA 544
            G + VNR        A   +  GV    +D   +   GL     GP   LD  G  VA 
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAY 230
Query: 545 ATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 584
             S    K F D  F+ P  +   +K G  G   GKG+Y Y
Sbjct: 231 YASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   + 
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK 74
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             A  ++   D   +L   L +   KP+                + C   +A    + GL
Sbjct: 75  DLAATLN---DTRPQLWARL-QAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGL 130
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
           PE+TLG++PG GGTQRL R VG S A +M+L  +SIT+++  + GL+  V  S+  L+  
Sbjct: 131 PEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLE-- 188
Query: 194 RLWALDIA---ARRKP 206
             +AL +A   AR  P
Sbjct: 189 --YALQLASKMARHSP 202

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 91
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 92  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 148
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 149 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 208
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 209 EARATATTIS 218

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 70
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 71  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 127
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 128 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 187
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 188 EARATATTIS 197

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 71
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 72  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 128
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 129 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 188
Query: 192 VSRLWALDIA 201
            +R  A  I+
Sbjct: 189 EARATATTIS 198

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 74  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 124
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 125 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 184
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 185 VETLVEEAIQCAEKIANNSK 204

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 15  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 74
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 75  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 125
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 126 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 185
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 186 VETLVEEAIQCAEKIANNSK 205

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 12  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 71
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 72  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 122
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             K Q G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 123 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 182
Query: 186 SEELLKVSRLWALDIAARRK 205
            E L++ +   A  IA   K
Sbjct: 183 VETLVEEAIQCAEKIANNSK 202

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 14  GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI    K
Sbjct: 14  AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK 73
Query: 73  VHGAGDVSLMPDVSVEL-VVNLIED------CKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                      D  + L  +N   D       K P+                + C   +A
Sbjct: 74  -----------DDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVA 122
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   + G PE+ LGV+PG GGTQRL +L+G  +A+E +     ++++E  +LG+++ VV+
Sbjct: 123 SSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVS 182
Query: 186 SEELLK 191
            E L++
Sbjct: 183 PELLME 188

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGV ++TL  P  +NA+   ++  L    +E     +V+A++LTG G  FS G D+  F
Sbjct: 7   QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEF 66
Query: 71  QKVHGAGDVSLMPDVSVEL-----VVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                 GD    PD    L     VV  +   +KP+                +    R+A
Sbjct: 67  ------GDRK--PDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLA 118
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A         + +G++P  G +  LPRLVGL+KA E++LLS  +++EE   LGL+  VV 
Sbjct: 119 AVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVP 178
Query: 186 SEELLKVSRLWALDIA 201
           +E+L++ +   A ++A
Sbjct: 179 AEKLMEEALSLAKELA 194

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 41  EEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCK 98
           EEA +R     ++LTG G + F  G D+   ++  G  +  +   VS +      +E   
Sbjct: 50  EEANTR----VVILTGAGEKAFCAGADL---KERAGXNEEQVRHAVSXIRTTXEXVEQLP 102
Query: 99  KPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158
           +P+                + C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +
Sbjct: 103 QPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 162
Query: 159 AIEMMLLSKSITSEEGWKLGLIDAVV 184
           A E++   + I+++E  + GL++ VV
Sbjct: 163 AKELIYTGRRISAQEAKEYGLVEFVV 188

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N+ V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   
Sbjct: 40  NNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEM 99
Query: 71  QKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           Q      ++S     S + + +   +   KKP+                M C    A  K
Sbjct: 100 Q------NLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEK 153
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
            Q   PE+ +G IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E 
Sbjct: 154 AQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVET 213
Query: 189 LLKVSRLWALDIAARRK 205
           L++ +   A  IA+  K
Sbjct: 214 LVEEAIQCAEKIASNSK 230

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 9/204 (4%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P V NA     V  + D F +A    ++  I+LTG GG+ F  G D    
Sbjct: 20  NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGD---- 75
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QKV G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 76  QKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAAD 135
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G   L R+VG  KA E+  L +  T++E  ++GL++ VV  E
Sbjct: 136 NAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPLE 195
Query: 188 ELLKVSRLWALDIAARRKPWIRSL 211
           +L + +  WA +I  +    IR L
Sbjct: 196 QLEEETVKWAQEILEKSPTAIRFL 219

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 2/188 (1%)
Query: 10  VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+  
Sbjct: 29  VADQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPE 88
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
            + ++ A +      V +E  ++ +    KP                 +    R++    
Sbjct: 89  LRTLN-APEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNV 146
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G  E+  G+IPG GG  RL R+VG S+A E++   +   +EE   LGLID +V  +++
Sbjct: 147 KFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDV 206
Query: 190 LKVSRLWA 197
              +  WA
Sbjct: 207 YDSAVAWA 214

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  ++        L+   
Sbjct: 38  NALNDGLMAALKDCLTDIP--DQIRAVVIHGIGDHFSAGLDLSELRERDAT--EGLVHSQ 93
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
           +   V + I+ C+ P+                   H R+A       LPE + G+  G G
Sbjct: 94  TWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGG 153
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           G+ RLPRL+G+++  +MML  +  ++ EG
Sbjct: 154 GSVRLPRLIGVARMADMMLTGRVYSAAEG 182

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 16/184 (8%)
Query: 8   MEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           ++V  +G     +IN P   NA+  P  A L   F E    +     VL GNGG F  G 
Sbjct: 10  VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGA 69
Query: 66  DINVF-----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
           D+  F       VH  G   + P   +           KP+                + C
Sbjct: 70  DLKAFGTAEANAVHRTGPGPMGPSRMM---------LSKPVIAAVSGYAVAGGLELALWC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
             R+A      G+     GV    GGT RLPRL+G S+A++M+L  +++ ++E   +GL 
Sbjct: 121 DLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLA 180
Query: 181 DAVV 184
           + VV
Sbjct: 181 NRVV 184

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 118 MGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           + C  R    +  ++GLPE++LGV+ G GGTQRL RL+G S+A++  +  ++IT +E  +
Sbjct: 121 LACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXNITGETITPQEALE 180
Query: 177 LGLIDAVVTSEELLKVSRLWALDIA 201
           +GL++ V    E  + +R +A  +A
Sbjct: 181 IGLVNRVFPQAETRERTREYARKLA 205

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 4/194 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA +TL  P  +NAL     A L+D   E + R  V+A+VL G G  F  G D++  
Sbjct: 24  TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEI 83
Query: 71  QKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
                + D + + D +     VV  + +C  P+                +    R+A P 
Sbjct: 84  IGATLSXDTARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS 143
Query: 129 TQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           T+       +G+  G  G    LPR+VGL  A  ++ L  ++ + E  ++GLI  +    
Sbjct: 144 TRFAFLFTRVGLSGGDXGAAYLLPRVVGLGHATRLLXLGDTVRAPEAERIGLISELTEEG 203
Query: 188 ELLKVSRLWALDIA 201
              + +R  A  +A
Sbjct: 204 RADEAARTLARRLA 217

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPD 84
           N+L+  ++  L    +   S   V+ I++     G F  G D+    K+  +    + P 
Sbjct: 34  NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS---EVGPF 90
Query: 85  VS-VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
           VS +  V+N I +   P                 + C  R+AA   ++GL E  L +IPG
Sbjct: 91  VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG 150
Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
            GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   +    +   ALD+A
Sbjct: 151 GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLA 208

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 4/196 (2%)
Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M+A R  + V  DG  +I  +N P   NAL+  +V+     ++E    D ++A +LTG G
Sbjct: 5   MSAARELL-VERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG 63
Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXM 118
             +  G D++    V       L P  ++   + L     KP+                 
Sbjct: 64  SAYCVGGDLSDGWMVRDGSAPPLDP-ATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQ 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
               R++      GLPE+  G++PG G   RL R +  +KA+EM+L  + +T+ E +  G
Sbjct: 123 QTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFG 182
Query: 179 LIDAVVTSEELLKVSR 194
           L+  VV +   L  +R
Sbjct: 183 LVGHVVPAGTALDKAR 198

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 2/197 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 25  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 84
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 85  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 144
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 145 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 204
Query: 184 VTSEELLKVSRLWALDI 200
           V   +L K +  W  ++
Sbjct: 205 VPLADLEKETVRWCREM 221

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 2/197 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208
Query: 184 VTSEELLKVSRLWALDI 200
           V   +L K +  W  ++
Sbjct: 209 VPLADLEKETVRWCREM 225

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF- 70
           D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F  G D+  F 
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFV 74
Query: 71  -----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                    G G  ++ P              +KPI                + C   +A
Sbjct: 75  SGEAVLSERGLGFTNVPP--------------RKPIIAAVEGFALAGGTELVLSCDLVVA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
               + G+PE+  G++ G GG  RLP  +    A+E+ L  +S T+E+  K G I+ +V 
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVD 180
Query: 186 SEELLKVSRLWALDIAAR 203
             + L      AL++AA+
Sbjct: 181 DGQALDT----ALELAAK 194

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 35  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 90
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 91  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +       +G++P +G + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 140 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 199
Query: 190 LKVSRLWALDIAARRKPWIRSL----HRTD 215
           L  +R  A  I    +  +R+L    HR D
Sbjct: 200 LGAARAVAASIVGNNQNAVRALLTSYHRID 229

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           +A++TL  P  +NA+A  ++   K    + +  +DV+A+V+TG G  F  G D      +
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI 93
Query: 74  HGAGDVSLMPDV---SVELVVNLIEDCKK---PIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G ++  P +   S+EL+  +I   ++   P+                + C  R+A+ 
Sbjct: 94  PHIGGLT-QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 128 KTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
                   +  G+     G +  LPR +G S+A ++ML  + + ++E  ++GL+   V S
Sbjct: 153 DAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS 212
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRT 214
           E LL+        IA   +P I    RT
Sbjct: 213 ESLLEECYAIGERIAGFSRPGIELTKRT 240

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 2/194 (1%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V        +A   D+V  I+LTG G + F  
Sbjct: 28  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCA 87
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                  C   
Sbjct: 88  GGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLT 147
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G     R+VG  KA E+  L +   +++    GL++ V
Sbjct: 148 IAAENAIFGQTGPKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTV 207
Query: 184 VTSEELLKVSRLWA 197
           V   +L K +  W 
Sbjct: 208 VPLADLEKETVRWC 221

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 89/220 (40%), Gaps = 14/220 (6%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGD---- 76
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QK  G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 77  QKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAAD 136
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E
Sbjct: 137 NAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLE 196
Query: 188 ELLKVSRLWALDIAARRKPWIRSLH-----RTDKLGSLSE 222
           ++   +  W  +I       +R L       TD L  L +
Sbjct: 197 KVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQ 236

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 6   VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V  E    GVAIIT      +NA    + AG     + A +   ++ IVLTG G  F  G
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90
Query: 65  FDINVFQKVHG-------AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXX 117
             +       G       A D +L  D+  E   + +   +KP+                
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLA-DLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQA 149
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  R AA   +        G+I  FG +  LPRL   + A++++L  ++  +EE  +L
Sbjct: 150 LMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQL 209
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKP 206
           GL+  VVT E+L+  +  +A DIA    P
Sbjct: 210 GLVKEVVTPEQLMPRALEYAEDIARYCSP 238

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 18  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 73
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 74  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           +       +G++P +G + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 123 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 182
Query: 190 LKVSRLWALDIAARRKPWIRSL----HRTD 215
           L  ++  A  I    +  +R+L    HR D
Sbjct: 183 LGAAQAVAASIVGNNQNAVRALLASYHRID 212

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +  + +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 4/195 (2%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML  +++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 4/196 (2%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+  
Sbjct: 14  RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAA 73
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
            +   A      PD S   V     + + P+                +    RI A + +
Sbjct: 74  AETFAA---PRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGR 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L
Sbjct: 131 YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVL 190
Query: 191 KVSRLWALDIAARRKP 206
             +   A DIA    P
Sbjct: 191 GAALRMAHDIATNVAP 206

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN--VF 70
           GV  +TL  P  +N+    + A L +  ++    D ++ ++LTG G  F  G D+N    
Sbjct: 24  GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNV 83
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                A D+ +  +     +V  +    KP+                +G    IAA   +
Sbjct: 84  DPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAK 143
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +    LG+IP  GGT  LPR+ G ++A+ + LL   +++E+  + G+I  VV  E L 
Sbjct: 144 FVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLA 203
Query: 191 KVSRLWALDIAAR 203
             ++  A  +A +
Sbjct: 204 DTAQQLARHLATQ 216

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 8   MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           + V +DG  +   ++ P  +NA+  P++  L     +A + + V+A++LTG G  F  G 
Sbjct: 8   ISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGG 67
Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
           D+                  +   VV  I    KP+                + C   +A
Sbjct: 68  DLTGGDTA--------GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           AP +   L    +G++P  G +  LP L+G ++   M + ++ I++   ++ G+I  + +
Sbjct: 120 APASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITS 179
Query: 186 SEELLKV 192
           ++E   V
Sbjct: 180 ADEYESV 186

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            D V  +TL  P   NAL+  + +       +A + DDV  +++TG    F  G D+   
Sbjct: 16  TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL 75
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                 GD + +PD+S +       D  KP+                + C   IA+   +
Sbjct: 76  ------GDTTELPDISPKW-----PDMTKPVIGAINGAAVTGGLELALYCDILIASENAK 124
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                  +G++P +G + RLP+ VG+  A  M L    +++++  + GL+  VV  ++LL
Sbjct: 125 FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLL 184
Query: 191 KVSRLWALDIAARRKPWIRSL----HRTDKL 217
             +R  A  I    +  +R+L    HR D L
Sbjct: 185 TAARRVAASIVGNNQKAVRALLDSYHRIDAL 215

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 9/209 (4%)
Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G  FS
Sbjct: 32  PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 91
Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
            G D+    +  G  D       +   V+  I +   P+                  C  
Sbjct: 92  SGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDI 150
Query: 123 RIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
            +A+ K+    P + +G+    PG    + +PR V    A+EM+   + I+++E    GL
Sbjct: 151 AVASDKSSFATPGVNVGLFCSTPGVALARAVPRKV----ALEMLFTGEPISAQEALLHGL 206
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWI 208
           +  VV   EL + +   A  IA+  +P +
Sbjct: 207 LSKVVPEAELQEETMRIARKIASLSRPVV 235

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E+G+DGV  + L +P +N++   +   L D +        V+A+++ G G  FS 
Sbjct: 19  PSLRCELGDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSS 78
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G   ++  +  G   G + +M +   +LV N+I +C  P+                +   
Sbjct: 79  GGSFDLIDETIGDYQGRIRIMREAR-DLVHNMI-NCDTPVVSAIRGPAVGAGLVVALLAD 136
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A    +L      LGV  G       P LVG++KA   +L  +++  EE  ++GL+ 
Sbjct: 137 ISVAGRTAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVS 196
Query: 182 AVVTSEELLKVS 193
             V  +++L  +
Sbjct: 197 LCVDDDDVLSTA 208

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 4/213 (1%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS 
Sbjct: 13  PSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSS 72
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G    +  +  G   G + +M +   +LV+NL+ +  KP+                +   
Sbjct: 73  GGSFELIDETIGDYEGRIRIMREAR-DLVLNLV-NLDKPVVSAIRGPAVGAGLVVALLAD 130
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A+   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+ 
Sbjct: 131 ISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVS 190
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
             V  +E+L  +   A ++A   +  IR   R+
Sbjct: 191 TCVDDDEVLPTATRLAENLAQGAQNAIRWTKRS 223

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL  P  +NA    + A +    ++A +  +V+ +V+TG G  F  G D++   + 
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEE 72
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
              GDV       +   ++ +E   KP+                + C  R+ + K     
Sbjct: 73  MDHGDVLRSRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
             + +G++P  G    LPRLVG +KA+E+ +L + +T
Sbjct: 130 AFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 6/204 (2%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG--GFDINVF 70
           G+A I +  P   NA     V  L D F  A   + +  ++LTG G    G   F     
Sbjct: 19  GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78
Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           Q V G G   D    P ++V  +  LI    K +                + C   IAA 
Sbjct: 79  QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
               G     +G   G  G+  L R+VG  KA E+  L +  +++E  ++G+++ VV  +
Sbjct: 139 NAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVD 198
Query: 188 ELLKVSRLWALDIAARRKPWIRSL 211
            L +    WA +I ++    IR L
Sbjct: 199 RLEEEGIQWAKEILSKSPLAIRCL 222

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 5/205 (2%)
Query: 14  GVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G  +I  +N P   NAL+  ++  + + ++   +  D++  +LTG GG F  G D+    
Sbjct: 28  GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAAT 87
Query: 72  KVHGAGDVSLMPDVSVELVVNLIED--CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           K    GD           +  L++    KKP+                 G   R+AA   
Sbjct: 88  K-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA 146
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           + G+ E    + P  G   RL R +  + A +++L  + IT+ E  ++GL+  VV   + 
Sbjct: 147 KFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA 206
Query: 190 LKVSRLWALDIAARRKPWIRSLHRT 214
           L  +   A  IAA     ++++ RT
Sbjct: 207 LTKALEIAEIIAANGPLAVQAILRT 231

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           VA+IT+  P   NA+   +   + D  EEA    +V A+V+TG G + F  G D+     
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKAISR 84
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V+   D  KP                 +     IA
Sbjct: 85  GENLYHAEH--------PEWGFAGYVHHFID--KPTIAAVNGTALGGGSELALASDLVIA 134
Query: 126 APKTQLGLPELTLGVIPGFGG----TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
                 GLPE+  G+I G GG     ++LPR V    A+E++L  + +T+ +  + GLI+
Sbjct: 135 CESASFGLPEVKRGLIAGAGGVFRIVEQLPRKV----ALELVLTGEPMTASDALRWGLIN 190
Query: 182 AVV 184
            VV
Sbjct: 191 EVV 193

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA+  P  A L   F E  +  +    VL G+ G F  G D+       G     L P  
Sbjct: 33  NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGN---ELHPHG 89
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
              +  + +    KP+                + C  R+      LG+     GV    G
Sbjct: 90  PGPMGPSRLR-LSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDG 148
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205
           GT RLPRL+G S+A++++L  + + + E   +GL++ VV   +  + +   A +IAA  +
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQ 208
Query: 206 PWIRS 210
             +R+
Sbjct: 209 QCVRA 213

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   ++     GD+ L+  V
Sbjct: 29  NALSAELVEALIDGVD-AAHREQVPLLVFAGAGRNFSAGFDFTDYE-TQSEGDL-LLRMV 85
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
            +E+++  +                         C  R   P+    +P L  G++ G  
Sbjct: 86  RIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLG-- 143
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
            T+R   +VG  +A+ ++  +++  ++E  ++G +
Sbjct: 144 -TRRFRDIVGADQALSILGSARAFDADEARRIGFV 177

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVF-- 70
           GVA++   NPPVN+L++  +  L    E+  +    + ++LT +  G FS G D+     
Sbjct: 14  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG 73
Query: 71  -QKVHGAGDVSLMPDVSVELV-VNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA-- 126
               H AG    + ++ + L   NL+      +                + C  RI A  
Sbjct: 74  RSPAHYAGYWKAVQELWLRLYQSNLV------LVSAINGACPAGGCLVALTCDYRILADN 127
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
           P+  +GL E  LG+I  F     L   +G   A   + L       E  ++G++D VV  
Sbjct: 128 PRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE 187
Query: 187 EEL 189
           E++
Sbjct: 188 EQV 190

>pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 13/219 (5%)
Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+I+  +  VNAL       L    + A  RDDV A+V+TGNG  FSGGFD+    K
Sbjct: 13  DSIAVISXDDGKVNALGPAXQQALNAAIDNA-DRDDVGALVITGNGRVFSGGFDL----K 67
Query: 73  VHGAGDVSLMPDV---SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +  +G+V    D      EL   L+   K  +                 G H R+AA   
Sbjct: 68  ILTSGEVQPAIDXLRGGFELAYRLLSYPKPVVXACTGHAIAXGAFLLSCGDH-RVAAHAY 126
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
            +   E+ +G    +   +     +  S   +   L+K+   E     G ID +   E +
Sbjct: 127 NIQANEVAIGXTIPYAALEIXKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVV 186
Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228
           +  +   A + A   +      H   KL S ++A   ++
Sbjct: 187 VSRAEEAAREFAGLNQ----HAHAATKLRSRADALTAIR 221

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI+ VV 
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVE 188
Query: 186 S 186
           +
Sbjct: 189 A 189

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 6/203 (2%)
Query: 7   TMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ +  DG  ++  +N P   NA    ++  L     E  +  D++A VL G G  F+ G
Sbjct: 10  TLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAG 69
Query: 65  FDI-NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+ +V  ++ G    SL P+  +           KP+                +     
Sbjct: 70  LDLASVAAEIQGG--ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIV 127
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IA         E+  G+ P  G T R PR  G   A+  ML + +  + E  ++G++  +
Sbjct: 128 IADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEI 187
Query: 184 VTSEELLKVSRLWALDIAARRKP 206
           V   E +  +   A  I AR+ P
Sbjct: 188 VPVGEHVDTAIAIAQTI-ARQAP 209

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
             + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI+ VV 
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVE 188
Query: 186 S 186
           +
Sbjct: 189 A 189

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)
Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           VT+++ +D  V  +TL  P  +NA    +         +A     V  ++LTG+G  FS 
Sbjct: 6   VTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSA 65
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D+   Q      + S         ++  +    KP+                      
Sbjct: 66  GTDLAEMQARITDPNFS-EGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLA 124
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
             +   +L  P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL+  +
Sbjct: 125 FMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRI 184
Query: 184 VTSEELLKVSRLWALDIAAR 203
            + EELL  +R  A  +AA+
Sbjct: 185 CSPEELLPEARRHAEILAAK 204

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 11/157 (7%)
Query: 45  SRD-DVKAIVLTGNGGRFSGGFDI-----NVFQ-KVHGAGDVS-LMPDV--SVELVVNLI 94
           SRD D +A+V++G G  F+ G D+     ++ Q K      +S  + D+    +   N+I
Sbjct: 71  SRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVI 130
Query: 95  EDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154
           E C KP+                  C  R  A      + E+ +G+    G  QRLP+++
Sbjct: 131 ERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVI 190
Query: 155 GLSKAI-EMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           G    + E+   ++ + ++E    GL+  V   +E++
Sbjct: 191 GNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVM 227

>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 4/190 (2%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS G    + +++
Sbjct: 20  GVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEM 79
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             + +  L        +V    +  +P+                +     +    T+L  
Sbjct: 80  RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLD 139
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
             L LGV  G       P LVG++KA   +LL++ +T EE  +LGL+   V  E++ +  
Sbjct: 140 GHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEK- 198
Query: 194 RLWALDIAAR 203
              AL++A R
Sbjct: 199 ---ALEVAER 205

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           + C  RIA  + +       +G+ P  G +  LPR++G  + + ++L  K  TSEE  +L
Sbjct: 121 LACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRL 180
Query: 178 GLIDAVVTSEELLK 191
           GLI  +  +++ L+
Sbjct: 181 GLIQEICENKQELQ 194

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           EV ++GV  +TL   P + L+   +A L D    A   D V  +V+ G G  F  G D+ 
Sbjct: 11  EVLSEGVLTLTLGRAPAHPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAGHDLK 70
Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIE----------DCKKPIXXXXXXXXXXXXXXXXM 118
              + H A      PD     V +L E           C KP                  
Sbjct: 71  EIGR-HRAD-----PDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXA 124
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWK 176
            C    A+P  +  LP +  G   GF  T  +   R++G     E  L   +  ++    
Sbjct: 125 ACDLAYASPAARFCLPGVQNG---GFXTTPAVAVSRVIGRRAVTEXALTGATYDADWALA 181
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
            GLI+ ++    L       A  +AAR +  +R
Sbjct: 182 AGLINRILPEAALATHVADLAGALAARNQAPLR 214

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KA 369
           V ++G G++G   A         V L ++  + +   ++ I   ++ L   G L      
Sbjct: 6   VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 370 NNALKMLKGVLDYSEFKDVDMVI-EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428
              L ++ G  +  E  +  M I E V E + LK+KIF++L+       IL+++TS +  
Sbjct: 66  EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 429 NIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV---RTERTSAQVILDLMTXXXXXXXXXXX 485
           + +        + I AH  +P + +PL+E+V    T  T+      LM            
Sbjct: 126 SKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMK--KIGQCPMRV 183
Query: 486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP-----IGPFQLLDLAGY 540
                GF +NR  +     A  LV  G+        + S GL      IGP + + L   
Sbjct: 184 QKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNAE 243
Query: 541 GVAAATSK 548
           G+ +   +
Sbjct: 244 GMLSYCDR 251

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 22/244 (9%)
Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E  +D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS 
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D N  +++  + D+    D  ++L   ++ +  KP                 +    R
Sbjct: 61  GGDFNEVKQLSRSEDIEEWIDRVIDLYQAVL-NVNKPTIAAVDGYAIGMGFQFALMFDQR 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           + A      +PEL  G+    G    L    G S   E++   +S+ +       L++ V
Sbjct: 120 LMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV 178
Query: 184 VTSEELLKVSRLWALDIA------------ARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
           V S  LL  +   A  +A            A  KP+I  L +T       +A + +  A 
Sbjct: 179 VESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT------RDASKAVHKAA 232
Query: 232 LQAK 235
            QA+
Sbjct: 233 FQAR 236

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 12/176 (6%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   +V  L     +A      +AIVLTG G  F  G D++      G    +  PD 
Sbjct: 43  NALNSQLVEELTQAIRKAGD-GSARAIVLTGQGTAFCAGADLS------GDAFAADYPDR 95
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFG 145
            +EL    ++    P+                M C  R+ AP      P    G+     
Sbjct: 96  LIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNW 154
Query: 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
             +RL  LVG  +A  M+L ++ +T+E     G+ + + T    L  ++ WA +IA
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIA 206

>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From Mycobacterium Marinum Length = 233

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 7/217 (3%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGFD+ V  
Sbjct: 12  DDAIGVIRMDDGKVNVLGPTMQQALNEAID-AADRDNVGALVIAGNHRVFSGGFDLKVLT 70
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
                  + ++     EL   L+   K  +                 G H R+AA    +
Sbjct: 71  SGEAKPAIDMLRG-GFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDH-RVAAHAYNV 128
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
              E+ +G+   +   + L   +  S   +   L+K+   E     G ID +   E +L 
Sbjct: 129 QANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLS 188
Query: 192 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228
            +   A + A   +      H   KL + +EA + ++
Sbjct: 189 RAEEAAREFAGLNQ----QAHNATKLRARAEALKAIR 221

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG F  G D++   + 
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLS---EA 77
Query: 74  HGAGDVSLMPDVSVE------LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G  S   D++VE       ++  I + + P+                  C   +A P
Sbjct: 78  GSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGP 137
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
           ++   L E  +GV P       LP+L   + A    L  +   +    ++GLI   + +E
Sbjct: 138 RSSFALTEARIGVAPAIISLTLLPKLSARAAA-RYYLTGEKFDARRAEEIGLI--TMAAE 194
Query: 188 EL 189
           +L
Sbjct: 195 DL 196

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-- 83
           NA+       L + F++ +   D +A+V++G G  F+ G D+     +  A D+   P  
Sbjct: 26  NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDL-----MDMASDILQPPGD 80
Query: 84  DVS------------VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
           DV+             +    +IE C KP+                  C  R        
Sbjct: 81  DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFF 140
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAI-EMMLLSKSITSEEGWKLGLIDAVVTSEE-L 189
            + E+ +G+    G  QRLP+++G    + E+   ++ + ++E    GL+  V   ++ +
Sbjct: 141 QVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVM 200
Query: 190 LKVSRLWALDIAAR 203
           L  +   A DI+++
Sbjct: 201 LNAAFALAADISSK 214

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+      L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59
Query: 65  FDINVFQKVHGAG-DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+   ++V   G + +    +S+  + + +    KP                 + C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +   + +LG  E+ +G +        L R VG   A +++L  + + + E   LGL++ +
Sbjct: 120 VXDEEARLGYTEVKIGFVAALVSVI-LVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
Query: 184 VTSEELLKVSRLWALDIA 201
               + L+ ++  A ++A
Sbjct: 179 APPGKALEEAKALAEEVA 196

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A ITL  P   NA    ++  L   +  A   ++VK I+L  NG  FS G D+    
Sbjct: 31  DSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLR--- 87
Query: 72  KVHGAGDVSLMPDVSVELVVN-----------LIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
              G G+V     +S+E ++               +  KP                   C
Sbjct: 88  ---GGGEVP--EKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPC 142
Query: 121 HARIAAPKTQLGLPELTLGV--IPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
              +A+       P   +G+  +   G T  L    G  KA E++   +++T+EE  + G
Sbjct: 143 DLILASDDALFSDPVALMGIGGVEYHGHTWEL----GPRKAKEILFTGRALTAEEAERTG 198
Query: 179 LIDAVVTSEELLKVSRLWALDIA 201
           +++ VV  +EL   +R  A  IA
Sbjct: 199 MVNRVVARDELDAQTRELAEQIA 221

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 118 MGCHARIAAPKTQ-LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
           + C  R A+ +   LG PE+ +G  PG G  Q L RL+G  +A+E +L S    ++   +
Sbjct: 123 LACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAER 182
Query: 177 LGLIDAVVTSEEL 189
            G ++  V   EL
Sbjct: 183 YGWVNRAVPDAEL 195

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK--VHGAGDVSLMP 83
           NAL   ++  + +    A + DD K ++ +  G  F  G D   F K   +     SL  
Sbjct: 46  NALNTEVIKEIVNALNSAAA-DDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEM 104
Query: 84  DVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
             +++  VN     KKPI                  C    A  K     P  T G  P 
Sbjct: 105 VDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD 164
Query: 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV-----VTSEELLKVSRL 195
              +   P+++G + A EM++  + +T+ E    GL+  V      T E ++++  L
Sbjct: 165 GCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 6/181 (3%)
Query: 25  VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINVFQKVHGAGDVSLM 82
           +NAL+   +  L     +  +R +++ I+L    G   FS G DI+   ++   G   L 
Sbjct: 25  LNALSKVFIDDLMQALSD-LNRPEIRCIILRAPSGSKVFSAGHDIH---ELPSGGRDPLS 80
Query: 83  PDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
            D  +  +  +I+   KPI                M     IAA  +   +  + LGV  
Sbjct: 81  YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPY 140
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
              G   L R  G     E++  +  IT++    +G+++ VV  EEL   +   A  I+ 
Sbjct: 141 NLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISE 200
Query: 203 R 203
           +
Sbjct: 201 K 201

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINV 69
           G  G+A++   NPPVN+L++  +       E+  +   ++ ++LT    G FS G D+  
Sbjct: 12  GEAGIAVMKFKNPPVNSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLME 71
Query: 70  F---QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA 126
                  H A     + ++ + L ++ +      +                + C  RI A
Sbjct: 72  MYGRNPAHYAEYWKAVQELWLRLYLSNL-----TLISAINGASPAGGCLMALTCDYRIMA 126
Query: 127 --PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
              K  +GL E  LG++  F         +G   A   + L       E  K+GL+D VV
Sbjct: 127 DNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERALQLGTLFPPAEALKVGLVDEVV 186
Query: 185 TSEELLKVSR 194
             +++   +R
Sbjct: 187 PEDQVHSKAR 196

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 8/180 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA    ++  ++ + + A +  +V+ IVL  NG  FS G D+   Q +    +   + D 
Sbjct: 26  NAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDS 85
Query: 86  SVELVVNL---IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
            V  + NL   I    KP                   C   IA+   +    E+ LG+IP
Sbjct: 86  LV--LGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP 143
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSI-TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201
               +  + R +G  +A +M+ +S  +  +   + L L+   V  + LL+ +  +A  I+
Sbjct: 144 AV-ISPYVVRAIG-ERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQIS 201

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VSLM 82
           NAL   ++  + +    A + DD K ++ +  G  F  G D   F + H   D    SL 
Sbjct: 27  NALNTEVIKEMVNALNSAAA-DDSKLVLFSAAGSVFCCGLDFGYFVR-HLRNDRNTASLE 84
Query: 83  PDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
              +++  VN     KKPI                  C    A  K     P  T G  P
Sbjct: 85  MVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSP 144
Query: 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV-----VTSEELLKVSRL 195
               +   P+++G + A EM++  + +T+ E    GL+  V      T E ++++  L
Sbjct: 145 DGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 202

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 11/202 (5%)
Query: 10  VGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFD 66
           +G  G   +  +N P  +NAL +  +  +  + ++     +   I++ G GG+ F  G D
Sbjct: 10  LGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGD 69
Query: 67  INVFQKVHGAGDVSLMPDVSVE--LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARI 124
           I V  +   A    + P    E   + N +  C+KP                 +    R+
Sbjct: 70  IRVISEAEKAKQ-KIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRV 128
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
           A  K     PE  +G+ P  GG   LPRL G      + L    +   + ++ G+    V
Sbjct: 129 ATEKCLFAXPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFV 187
Query: 185 TSEELLKVSRLWALDIAARRKP 206
            SE+L  +      D+ A + P
Sbjct: 188 DSEKLAXLEE----DLLALKSP 205

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72  KVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           +   AG   L   +  E       L+    KP                 + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVS 193
           L +V+
Sbjct: 197 LREVT 201

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 5/194 (2%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS-GGFDINVFQK 72
           GVA I L NPPVN +   ++  L+           V+ IV +     F     D+ + +K
Sbjct: 18  GVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEK 77
Query: 73  VHGAGDV--SLMPDVSV-ELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +    ++  S   DV+V + V  LI    +                         AA +T
Sbjct: 78  MDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET 137
Query: 130 Q-LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
             LG  E  +G+IPG GGTQ L   VG ++A+E++L +    +E     G I+  + ++E
Sbjct: 138 AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE 197
Query: 189 LLKVSRLWALDIAA 202
           L +     A +IAA
Sbjct: 198 LDEYVDRVARNIAA 211

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 10/187 (5%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINVF 70
           GV ++TL  P  +N+L   +V  + ++     + D V+A++LTG G R   +GG  + ++
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 71  Q--KVHGAGDVSLMPDVSVELVVNL-IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              K  GA       D   E  +N  I    KP                    + R+   
Sbjct: 78  HSAKADGAEARRFWFD---EYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTD 134
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
            T++ +PE+ +G IP  GGT  L R  G    +   L     +  +   +G  D  V  +
Sbjct: 135 TTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHD 193
Query: 188 ELLKVSR 194
           ++ + +R
Sbjct: 194 KIDEFTR 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	724
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	0.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	0.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	0.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	0.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-171
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	8e-79
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	7e-24
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	6e-06
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-75
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	1e-66
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	3e-64
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	4e-64
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-63
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	9e-63
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	9e-63
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	2e-62
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-62
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	1e-60
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	4e-60
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	7e-60
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-59
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	3e-59
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	4e-59
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	5e-59
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	6e-59
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	6e-59
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	1e-58
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-58
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-58
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-58
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	3e-58
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	5e-58
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	5e-58
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	7e-58
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-57
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	1e-57
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-57
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-57
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-57
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-57
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	8e-57
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-56
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-56
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	4e-56
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-55
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	2e-55
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-55
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	4e-55
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	4e-55
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	4e-55
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	6e-55
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	6e-55
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	7e-55
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	3e-54
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-54
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	5e-54
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	7e-54
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-53
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	6e-53
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	6e-53
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	6e-53
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	7e-53
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	7e-53
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	1e-52
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	1e-52
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-51
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	1e-50
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-50
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	4e-50
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	2e-49
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	5e-49
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	9e-49
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	7e-48
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	7e-48
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	8e-46
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-45
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-09
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	4e-44
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-43
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-42
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	8e-22
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	3e-08
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	2e-07
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	1e-04

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  871 bits (2253), Expect = 0.0
 Identities = 423/725 (58%), Positives = 543/725 (74%), Gaps = 4/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
               +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GR
Sbjct: 4   RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR 63

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
           FSGGFDI+ F ++             S++++ +L+E  +KP VAA++GLALGGGLELAM 
Sbjct: 64  FSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           CHARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGL
Sbjct: 124 CHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGL 183

Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239
           IDAVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K AP
Sbjct: 184 IDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           NM     CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VT
Sbjct: 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVT 303

Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
           D GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V
Sbjct: 304 DRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRV 363

Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
            +G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCIL
Sbjct: 364 RKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCIL 423

Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
           A+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK I
Sbjct: 424 ASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483

Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
           KK PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G
Sbjct: 484 KKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVG 543

Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 599
           +GVA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   
Sbjct: 544 FGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKY 603

Query: 600 IEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 659
           IE+ R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM 
Sbjct: 604 IEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMG 663

Query: 660 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 719
           FP YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+ LSAPV     
Sbjct: 664 FPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQ--- 720

Query: 720 SRARL 724
           + +RL
Sbjct: 721 ASSRL 725

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  811 bits (2098), Expect = 0.0
 Identities = 209/715 (29%), Positives = 344/715 (48%), Gaps = 15/715 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
                +T+     G+  +        VN      +  L+   +   +   VK ++++   
Sbjct: 3   YEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK 62

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             F  G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ 
Sbjct: 63  DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           +    R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182

Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR---SLHRTDKLGSLSEAREVLKLARLQA 234
             +DAVVT+++L   +        +    +           KL ++ +           A
Sbjct: 183 SAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242

Query: 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294
            +  PN P     +  I++    G    +  EA  F +L     S  L+ +F   +   K
Sbjct: 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302

Query: 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 354
              V D     + V++ AV+G G+MG GIA         +++K++N   + +G+      
Sbjct: 303 KAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 360

Query: 355 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414
           + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E    
Sbjct: 361 LVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVR 420

Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
              ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   + 
Sbjct: 421 EDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480

Query: 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQL 534
             K + K P+VV +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L
Sbjct: 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL 540

Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
           +D+ G            + FPDR        +D L ++ R G+ NGKG Y YE   K K 
Sbjct: 541 MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQ 600

Query: 593 DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 652
              V   + E  +        +   VT+++I+  ++ P+  E+ R LE+GIV  A++ D 
Sbjct: 601 KKLVDSSVLEVLK----PIVYEQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADM 656

Query: 653 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
             V G+ FP +RGG + + D++G         ++++  G  + P+  L E A  G
Sbjct: 657 GLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE-LGALYHPTAKLREMAKNG 710

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  799 bits (2065), Expect = 0.0
 Identities = 236/729 (32%), Positives = 379/729 (51%), Gaps = 42/729 (5%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
             +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F  
Sbjct: 29  HSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
                     P +++  +V+ I+  +KP++AA++G+ALGGGLELA+GCH RIA  K ++G
Sbjct: 89  --------FTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVG 140

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
           LPE+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV   + ++ 
Sbjct: 141 LPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV-KSDPVEE 199

Query: 193 SRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
           +  +A  I  +     R       + SL     V   A  + +K  P +   + C+  I+
Sbjct: 200 AIKFAQKIIDKPIEPRRI--FNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQ 257

Query: 253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVR 309
             + H    G+ +E K+F  L     ++ L + FFA+++ +K    +         + V 
Sbjct: 258 ASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVS 317

Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
            V V+G G MG GIA +     I VV  E + + L    K I   +    +R       +
Sbjct: 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS 377

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
             A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS ++++
Sbjct: 378 --AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD 435

Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
            +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M++ K I K+ VVVGNC
Sbjct: 436 DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 495

Query: 490 TGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKE 549
            GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V     K 
Sbjct: 496 YGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKG 555

Query: 550 FDKAFPD-----------RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSV 596
                P             S  SPL D+L ++GR G+  GKG Y Y+K      KPDP +
Sbjct: 556 QGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWL 615

Query: 597 LPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVL 656
              + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D   + 
Sbjct: 616 STFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLH 671

Query: 657 GMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGI------ 708
           G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G       
Sbjct: 672 GYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEW 731

Query: 709 -PLSAPVSS 716
             L+ P  S
Sbjct: 732 QSLAGPHGS 740

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  523 bits (1350), Expect = 0.0
 Identities = 146/465 (31%), Positives = 228/465 (49%), Gaps = 31/465 (6%)

Query: 277 DTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVRKVAVIGGGLMGSGIATAHILNNIY 333
             ++ L + FFA+++ +K    +         + V  V V+G G MG GIA +     I 
Sbjct: 3   GQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS 62

Query: 334 VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 393
           VV  E + + L    K I   +    +R       +  A   L+      E   VD+V+E
Sbjct: 63  VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS--AKPKLRFSSSTKELSTVDLVVE 120

Query: 394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM 453
           AV E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM
Sbjct: 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM 180

Query: 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV 513
            LLE++ +  +S   I  +M++ K I K+ VVVGNC GF  NR   PY      L+  G 
Sbjct: 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGS 240

Query: 514 DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-----------RSFQSP 562
               +D  +  FG  +GPF++ DLAG  V     K      P             S  SP
Sbjct: 241 KPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSP 300

Query: 563 LVDLLLKSGRNGKANGKGLYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKPISVTE 620
           L D+L ++GR G+  GKG Y Y+K      KPDP +   + + R + +I    +  ++++
Sbjct: 301 LGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISK 356

Query: 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVY 680
           +EI+E  L+ ++NE+ R+LEEG+  R   +D   + G  +P ++GG +F+A +VG   V 
Sbjct: 357 EEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVL 416

Query: 681 TSLKKWSQLYGNF--FKPSRFLEERATKGI-------PLSAPVSS 716
             L+K+ +   +    +PS +L     +G         L+ P  S
Sbjct: 417 EKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHGS 461

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  499 bits (1286), Expect = e-171
 Identities = 114/443 (25%), Positives = 197/443 (44%), Gaps = 23/443 (5%)

Query: 275 MLDTSRGLVHVFFAQRATSKVPNV-----TDIGLKPRGVRKVAVIGGGLMGSGIATAHIL 329
           +      +        + +   ++          +   V  VA+IGGG MG  +A    L
Sbjct: 16  LYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGL 75

Query: 330 NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389
             I   L   N +   + ++ + A      +  +L   +       LK   D+ +  + D
Sbjct: 76  AGIETFLVVRNEQRCKQELEVMYAR---EKSFKRLNDKRIEKINANLKITSDFHKLSNCD 132

Query: 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP 449
           +++E+VIE + LK+++F+ LE  C   CI  TNTS++DLN +         ++G HFF+P
Sbjct: 133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNP 192

Query: 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLL 508
           A+V+ L+EI+    TS+Q I       + IKK+PV+VGNC  F  NR    Y  QS +L+
Sbjct: 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLM 252

Query: 509 VSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLL 568
              G    +ID  I +FG  +GP  + D+ G+ V     KE           +P+   + 
Sbjct: 253 YEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEP------NPIEKEMW 306

Query: 569 KSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMI 627
           +  R G+   KG Y Y+  + + + D  +  II    +            + +++++  +
Sbjct: 307 RLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQ----NAKSNIQIINDQDVINFM 362

Query: 628 LFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWS 687
           L+P VNE  R +EEG++   S +D   +LG  +P + GG + +    G + +   L  WS
Sbjct: 363 LYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWS 422

Query: 688 QLYGN---FFKPSRFLEERATKG 707
            L      +           + G
Sbjct: 423 SLEPKESAYIVADALKTANVSTG 445

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  259 bits (664), Expect = 8e-79
 Identities = 104/302 (34%), Positives = 154/302 (50%), Gaps = 4/302 (1%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L  +     K PV   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184

Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
           +  GF VNR   PY   A   +   V     ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244

Query: 546 TSKEFDKAFP-DRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 603
            +     AF  +R F  S +   L+  GR GK +G G+Y +    +       +      
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSP 304

Query: 604 RR 605
            +
Sbjct: 305 MK 306

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  104 bits (262), Expect = 7e-24
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 16/214 (7%)

Query: 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS 436
            GV D+   ++  + +EA +       K+  + +       +L   T       +  + +
Sbjct: 280 LGVYDWRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLA 338

Query: 437 SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 496
               +I            ++ I              +   +   K  + + +  G  + R
Sbjct: 339 RPVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR 392

Query: 497 AFFPYSQSARLLVSLGV-DVFRIDSAIRS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554
                   A   +  GV     ID+A+R     P GP       G+       +     +
Sbjct: 393 TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHY 452

Query: 555 PDRSFQ-SPLV--DLLLKSGRNGKANGKGLYTYE 585
            +  ++   L+    LL+SG       +G + + 
Sbjct: 453 GEERYRPCSLLRQRALLESGY----ESEGHHHHH 482

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
           ++   +  ++NE+   L++G V    D+D A  LG+++P    G + W   +G   +   
Sbjct: 389 LIWRTVAMIINEALDALQKG-VASEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRL 444

Query: 683 LKKWSQLYGNF-FKPSRFLEERA 704
           L+     YG   ++P   L +RA
Sbjct: 445 LENLQHHYGEERYRPCSLLRQRA 467

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  244 bits (626), Expect = 1e-75
 Identities = 94/292 (32%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG- 362
           K   V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +  
Sbjct: 11  KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70

Query: 363 ----KLTQDKANNALKMLKGVLDYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
               K   +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H 
Sbjct: 71  AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
           I A+NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190

Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLL 535
            + K PV   +  GF VNR   PY   A  L   G      ID+A++   G P+GPF+LL
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 250

Query: 536 DLAGYGVAAATSKE-FDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 585
           D  G            +    +   Q SP ++ L+   + GK  G+G Y Y+
Sbjct: 251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  220 bits (564), Expect = 1e-66
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 27/309 (8%)

Query: 299 TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL 358
           +D         KV VIG GLMG GIA A I +   VVL++V+ + L    + I   +   
Sbjct: 3   SDKIHHHHHHMKVFVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEEL--- 58

Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
                         L  ++      + KD D+V+EAV E +  K ++  E+E+    +  
Sbjct: 59  --------------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102

Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
           L +NTS I ++ + E+  S  R +G H+ +P HVMPL+EIV +  T ++ +  +    + 
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162

Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQL 534
           + K  VV        VNR        A  ++  GV    +D   +   GL     GP   
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220

Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD 593
           LD  G  VA   S    K F D  F+    +   +K G  G   GKG+Y Y   +  +  
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPKAYEERV 280

Query: 594 PSVLPIIEE 602
             +  ++  
Sbjct: 281 ERLKKLLRF 289

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  213 bits (545), Expect = 3e-64
 Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+ TL + P NA++  ++  + +  ++    D+++ +V+ G G  FS G DI  F  
Sbjct: 14  DHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
           V  A   + +  +        +E C KP++AA+ G ALGGGLE AM CH R A    +LG
Sbjct: 74  VTEAKQATELAQLGQV-TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLG 132

Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
           LPELTLG+IPGF GTQRLPR VG +KA EMML S  IT  E  K GL++ V   E  L  
Sbjct: 133 LPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDD 192

Query: 193 SRLWALDIAAR 203
           +   A  IA +
Sbjct: 193 TLKVAKQIAGK 203

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  212 bits (541), Expect = 4e-64
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 8/200 (4%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VT    +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGF
Sbjct: 7   VTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRVFSGGF 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           D+ V      +G+     D+      +   +    KP+V A  G A+  G  L      R
Sbjct: 65  DLKVLT----SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +AA    +   E+ +G+   +   + L   +  S   +   L+K+   E     G ID +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180

Query: 184 VTSEELLKVSRLWALDIAAR 203
              E +L  +   A + A  
Sbjct: 181 SLPEVVLSRAEEAAREFAGL 200

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  212 bits (542), Expect = 2e-63
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
             GVA I L NPPVN +   ++  L+           V+ IV +      F    D+ + 
Sbjct: 16  EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           +K+    +++      V +   V  LI    +  +  + G A GGG E         AA 
Sbjct: 76  EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135

Query: 128 -KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
               LG  E  +G+IPG GGTQ L   VG ++A+E++L +    +E     G I+  + +
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195

Query: 187 EELLKVSRLWALDIAAR 203
           +EL +     A +IAA 
Sbjct: 196 DELDEYVDRVARNIAAL 212

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  209 bits (535), Expect = 9e-63
 Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQ 71
           DG+A I L     N+  +          ++     D+K +++  +  + FS G DIN  +
Sbjct: 17  DGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
                   +       E  ++ I    +  +A +EG  +GGGLE+A+ C  R    +  +
Sbjct: 77  SA-DPRFKTQFCLFCNE-TLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           +GLPE++LGV+ G GGTQRL RL+G S+A++M +  ++IT +E  ++GL++ V    E  
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194

Query: 191 KVSRLWALDIAAR 203
           + +R +A  +A  
Sbjct: 195 ERTREYARKLANS 207

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  210 bits (537), Expect = 9e-63
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 5/196 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +  V   T   PP+N +   +V  L    EE       + ++        F    D+   
Sbjct: 15  DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV 74

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP- 127
            +   A            L  +   +       +A + G A G G E  + C  R A+  
Sbjct: 75  PEY-TAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
              LG PE+ +G  PG G  Q L RL+G  +A+E +L S    ++   + G ++  V   
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193

Query: 188 ELLKVSRLWALDIAAR 203
           EL +     A  ++  
Sbjct: 194 ELDEFVAGIAARMSGF 209

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  208 bits (532), Expect = 2e-62
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)

Query: 2   AAPRVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            + RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +   
Sbjct: 1   GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60

Query: 61  -FSGGFDINVFQK---VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+         H AG    + ++        +      +V+A+ G    GG  +
Sbjct: 61  VFSAGLDLTEMCGRSPAHYAGYWKAVQEL-----WLRLYQSNLVLVSAINGACPAGGCLV 115

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
           A+ C  RI A  P+  +GL E  LG+I  F     L   +G   A   + L       E 
Sbjct: 116 ALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEA 175

Query: 175 WKLGLIDAVVTSEELLKVSRLWALDIAAR 203
            ++G++D VV  E++   +        A 
Sbjct: 176 LQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  208 bits (533), Expect = 2e-62
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+   +
Sbjct: 31  DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR 90

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
            +  A +      V +E  ++ +    KP VAAV G ALG GL LA+    R++    + 
Sbjct: 91  TL-NAPEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
           G  E+  G+IPG GG  RL R+VG S+A E++   +   +EE   LGLID +V  +++  
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208

Query: 192 VSRLWALDIAAR 203
            +  WA      
Sbjct: 209 SAVAWARRYLEC 220

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  204 bits (521), Expect = 1e-60
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  I L  P   NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  +
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELR 81

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A +  +        V + I+ C+ P++AA++G  +GGGLELA   H R+A      
Sbjct: 82  ER-DATEGLVHSQTWHR-VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            LPE + G+  G GG+ RLPRL+G+++  +MML  +  ++ EG   G    ++ +     
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199

Query: 192 VSRLWALDIAAR 203
            +      +A  
Sbjct: 200 KALELGNRVAQN 211

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  202 bits (516), Expect = 4e-60
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    ++++     V  I+L      N+L++ ++  L++   +     + + ++LTG G 
Sbjct: 5   LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGE 64

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G D+     +     V     +     + ++E   +P++AA+ G+ALGGG EL++
Sbjct: 65  KAFCAGADLKERAGM-NEEQVRHAVSMIRT-TMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
            C  RIAA    LGL E TL +IPG GGTQRLPRL+G+ +A E++   + I+++E  + G
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
           L++ VV    L + +   A  IA+ 
Sbjct: 183 LVEFVVPVHLLEEKAIEIAEKIASN 207

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  199 bits (508), Expect = 2e-59
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 19/205 (9%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           V+  + +DGVA +TL N  VNA++  ++       ++A    D   +++TG  G  SGG+
Sbjct: 8   VSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQA--EKDRAIVIVTGQPGILSGGY 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMG 119
           D+ V              + ++ LV         +     PI+ A  G A+  G  L + 
Sbjct: 65  DLKVMTS---------SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLS 115

Query: 120 CHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
              RI       +GL E+ +G+     G +     +  S     ++ ++    E     G
Sbjct: 116 ADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAG 175

Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
            +D VV+ EEL   +   A  +   
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKI 200

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  200 bits (511), Expect = 3e-59
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 4/195 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +   AG   L   +  E        +    KP +A V G   GGG    + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
              GL E+  G+ PG   ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196

Query: 189 LLKVSRLWALDIAAR 203
           L +V+   A ++  +
Sbjct: 197 LREVTIELARNLLEK 211

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  199 bits (509), Expect = 4e-59
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI   
Sbjct: 12  EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K     D   +  ++     + +   K P++AAV GLALGGG ELA+ C   +A+   +
Sbjct: 72  AKD----DPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G PE+ LGV+PG GGTQRL +L+G  +A+E +     ++++E  +LG+++ VV+ E L+
Sbjct: 128 FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLM 187

Query: 191 KVSRLWALDIAAR 203
           + +   A  +A +
Sbjct: 188 EETMRLAGRLAEQ 200

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  199 bits (508), Expect = 5e-59
 Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +       GV +I L  P   NAL   + A + D   +  +  ++ AIV+TG+  
Sbjct: 6   TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +          + ++    + +   +KPIVAAV G ALGGG ELAM 
Sbjct: 66  AFAAGADIAEMVTL----TPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAML 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IAA   + G PE+TLG++PG GGTQRL R VG +KA+++ L  +S+T+EE  ++GL
Sbjct: 122 CDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  +V + +LL  +   A  IA  
Sbjct: 182 VSRIVPAADLLDEALAVAQRIARM 205

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  199 bits (509), Expect = 6e-59
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    + +E  +  V IITL  P   NAL   ++  +     E     D+ AI++TG+  
Sbjct: 22  MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK 80

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +      +             +   + P +AAV G ALGGG ELAM 
Sbjct: 81  AFAAGADIKEMADL----TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMM 136

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IAA   + G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL
Sbjct: 137 CDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGL 196

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV +++LL  +R  A  I+  
Sbjct: 197 VSRVVPADDLLTEARATATTISQM 220

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  198 bits (506), Expect = 6e-59
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +GV  IT+ +    N  +  IV GL+  F         K ++LTG G  FS G       
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLI 70

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +           +V V  +  LI DC+ PI+AA++G + GGGL L +     + + ++  
Sbjct: 71  R-------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
               +  G  P    +  L   +G   A EM+   ++   +E  + G+   VV+ +++L 
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183

Query: 192 VSRLWALDIAAR 203
            ++     IA  
Sbjct: 184 YAQQLGQKIAKS 195

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  198 bits (506), Expect = 1e-58
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                + +   +  V +I L  P   NA    ++  L     E  +  D++A VL G G 
Sbjct: 6   SDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+         G  SL P+  +           KP++ AV G  L  G+ELA+ 
Sbjct: 65  LFTAGLDLASVAA-EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IA         E+  G+ P  G T R PR  G   A+  ML + +  + E  ++G+
Sbjct: 124 ADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  +V   E +  +   A  IA 
Sbjct: 184 VQEIVPVGEHVDTAIAIAQTIAR 206

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  198 bits (507), Expect = 1e-58
 Identities = 49/198 (24%), Positives = 93/198 (46%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS G 
Sbjct: 15  LRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGG 74

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              +  +  G  +  +        +V  + +  KP+V+A+ G A+G GL +A+     +A
Sbjct: 75  SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           +   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+   V 
Sbjct: 135 SATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194

Query: 186 SEELLKVSRLWALDIAAR 203
            +E+L  +   A ++A  
Sbjct: 195 DDEVLPTATRLAENLAQG 212

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  198 bits (507), Expect = 2e-58
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+VA V G ++GGG  L M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           IAA     G     +G   G  G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208

Query: 184 VTSEELLKVSRLWALDIAAR 203
           V   +L K +  W  ++   
Sbjct: 209 VPLADLEKETVRWCREMLQN 228

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  197 bits (504), Expect = 2e-58
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             +P + ++   D V  +TL  P   NAL+  + +       +A + DDV  +++TG   
Sbjct: 6   ADSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+                   +  +     D  KP++ A+ G A+ GGLELA+ 
Sbjct: 65  VFCAGLDLKELG-----------DTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALY 113

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   IA+   +       +G++P +G + RLP+ VG+  A  M L    +++++  + GL
Sbjct: 114 CDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV  ++LL  +R  A  I   
Sbjct: 174 VTEVVAHDDLLTAARRVAASIVGN 197

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  197 bits (503), Expect = 3e-58
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            AA  + +E  +  V I+T+  P   NAL+  +V+     ++E    D ++A +LTG G 
Sbjct: 6   SAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            +  G D++    V   G    +   ++   + L     KP++AAV G  LGGG E+   
Sbjct: 65  AYCVGGDLSDGWMV-RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQ 123

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
              R++      GLPE+  G++PG G   RL R +  +KA+EM+L  + +T+ E +  GL
Sbjct: 124 TDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  VV +   L  +R  A  I  
Sbjct: 184 VGHVVPAGTALDKARSLADRIVR 206

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  196 bits (501), Expect = 5e-58
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  R--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
              FS G DI+        G   L  D  +  +  +I+   KPI++ VEG   GG  E+ 
Sbjct: 59  SKVFSAGHDIHELP---SGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMI 115

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
           M     IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +
Sbjct: 116 MSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAV 175

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           G+++ VV  EEL   +   A  I+ +
Sbjct: 176 GILNHVVEVEELEDFTLQMAHHISEK 201

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  196 bits (500), Expect = 5e-58
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS G D N  
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++  + D+    D  ++ +   + +  KP +AAV+G A+G G + A+    R+ A    
Sbjct: 68  KQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +PEL  G+    G    L    G S   E++   +S+ +       L++ VV S  LL
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185

Query: 191 KVSRLWALDIAAR 203
             +   A  +A+ 
Sbjct: 186 DAAITQAHVMASY 198

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  196 bits (500), Expect = 7e-58
 Identities = 73/193 (37%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q                    + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNR----TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +   E L+
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLV 189

Query: 191 KVSRLWALDIAAR 203
           + +   A  IA  
Sbjct: 190 EEAIQCAEKIANN 202

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  195 bits (499), Expect = 1e-57
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +       GV  IT       NA+   +  GL   + +  + + V+A++L G GG
Sbjct: 7   ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+ 
Sbjct: 66  VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 125

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +    T+L    L LGV  G       P LVG++KA   +LL++ +T EE  +LGL
Sbjct: 126 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +   V  E++ + +   A  +A  
Sbjct: 186 VALAVEDEKVYEKALEVAERLAQG 209

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  195 bits (498), Expect = 1e-57
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 6/208 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG- 58
           M+   V  E+  +    ITL  P   N L   +   L +      +   + +I+L     
Sbjct: 1   MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
             FS G  +              + +V   L   V  I    K  VA + G A GGG  +
Sbjct: 60  AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
            + C  RIA  + +       +G+ P  G +  LPR++G  + + ++L  K  TSEE  +
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALR 179

Query: 177 LGLIDAVV-TSEELLKVSRLWALDIAAR 203
           LGLI  +    +EL +  + +   ++  
Sbjct: 180 LGLIQEICENKQELQERVKNYLKAVSEG 207

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  195 bits (498), Expect = 1e-57
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 4/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +   +   GV  + +  P   NAL   +   +    +EA    DV+ +VL G   
Sbjct: 2   SLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH 60

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+  F       +      V   +++       KP++ AV+G+A+G G+ + + 
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
                A       +P ++LG+ P  G +Q L +  G  KA E++  +K   +E   + GL
Sbjct: 121 ADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           ++ +V  E+    ++  A  + A 
Sbjct: 181 VNEIV--EDAYATAQATAQHLTAL 202

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  195 bits (498), Expect = 2e-57
 Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       N+L   ++  ++     A + DD K ++L+  G  F  G D   F
Sbjct: 13  DGFTHILLSTKSSENNSLNPEVMREVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYF 71

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +            ++  +   VN     KKPI+ AV G A+G G  +   C    A  K
Sbjct: 72  IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P  T G  P    T   P+++G + A EM+L  + +T++E    GL+  V     
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191

Query: 189 LLKVSRLWALDIAAR 203
             +   +   ++A+ 
Sbjct: 192 FTQEVMVRIKELASC 206

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  195 bits (498), Expect = 2e-57
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           N G+ ++ +      N+L+  ++  L    +   S   V+ I++       F  G D+  
Sbjct: 19  NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             K+  + +V          V+N I +   P +AA++GLALGGGLELA+ C  R+AA   
Sbjct: 79  RAKM-SSSEVGPFVSKIRA-VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA 136

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
           ++GL E  L +IPG GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   + 
Sbjct: 137 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE 196

Query: 190 LKVSRLWALDIAAR 203
              +   ALD+A  
Sbjct: 197 GDAAYRKALDLARE 210

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  195 bits (497), Expect = 2e-57
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 3/193 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKR 80

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
               G      +P ++V  +  LI    KP++A V+G A+GGG  L + C   IAA    
Sbjct: 81  GH-GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI 139

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
            G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E++ 
Sbjct: 140 FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199

Query: 191 KVSRLWALDIAAR 203
             +  W  +I   
Sbjct: 200 DETVQWCKEIMKH 212

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  193 bits (493), Expect = 8e-57
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + V  I L  P   NAL   +V  L     +A      +AIVLTG G  F  G D++   
Sbjct: 29  EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGDA 87

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                 D        +  +   ++    P+V A+ G A+G GL+LAM C  R+ AP    
Sbjct: 88  FAADYPD-------RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
             P    G+       +RL  LVG  +A  M+L ++ +T+E     G+ + + T  +   
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQA 200

Query: 192 VSRLWALDIAAR 203
               WA +IA  
Sbjct: 201 ----WAAEIARL 208

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  192 bits (491), Expect = 1e-56
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAA 74

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                      PD S   V     + + P++AAV G A+G G+ LA+    RI A + + 
Sbjct: 75  ---ETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131

Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
            +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L 
Sbjct: 132 AIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLG 191

Query: 192 VSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQA 234
            +   A DIA    P      + L    ++  +S A    +      
Sbjct: 192 AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHL 238

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  192 bits (489), Expect = 2e-56
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               RVT E     + +I L      NA    ++A L     E    ++ +  VL  +G 
Sbjct: 9   SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+        A      PD  V+    +     KP+V AV+G     G+EL + 
Sbjct: 68  HFTAGLDLMELAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLN 126

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               +AA  T+    E+  G+ P  G T R PR  G + A+  +L      ++E  ++ L
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           +  VV   E L  +  +A  IA 
Sbjct: 187 LTEVVEPGEELARALEYAERIAR 209

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  192 bits (489), Expect = 4e-56
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 5/204 (2%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           + P   +E       I+T+  P   NAL+  ++  + + ++   +  D++  +LTG GG 
Sbjct: 18  SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAM 118
           F  G D+    K    GD           +  L      KKP++AAVEG A+ GG E+  
Sbjct: 77  FCAGMDLKAATK-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
           G   R+AA   + G+ E    + P  G   RL R +  + A +++L  + IT+ E  ++G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195

Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
           L+  VV   + L  +   A  IAA
Sbjct: 196 LVGHVVPDGQALTKALEIAEIIAA 219

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  189 bits (482), Expect = 2e-55
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + ++  ++ V  +TL  P   NA    +         +A     V  ++LTG+G 
Sbjct: 3   GSMVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+   Q                  ++  +    KP++ AV GL +G G  +   
Sbjct: 62  GFSAGTDLAEMQA-RITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
                 +   +L  P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  + + EELL  +R  A  +AA+
Sbjct: 181 VWRICSPEELLPEARRHAEILAAK 204

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  189 bits (483), Expect = 2e-55
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR- 60
           AP    E     V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + 
Sbjct: 8   APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+    +          P+      V       KP +AAV G ALGGG ELA+  
Sbjct: 67  FCAGADLKAIAR-RENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTELALAS 123

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              +A  + Q GLPE+  G+I   GG  R+   +    A+ ++L  + +++      GLI
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLI 183

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + VV +  +L  +   A  I  
Sbjct: 184 NEVVEAGSVLDAALALASAITV 205

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  190 bits (485), Expect = 2e-55
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D   F
Sbjct: 31  DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 89

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            K       +   ++   +   VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 90  VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P  T G  P    +   P+++G + A EM++  + +T+ E    GL+  V  +  
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209

Query: 189 LLKVSRLWALDIAAR 203
             +   +   ++A+ 
Sbjct: 210 FTQEVMIQIKELASY 224

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  190 bits (484), Expect = 4e-55
 Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 17/219 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITL-----INPPVNALAIPIVAGLKDKFEEA-----TSRDDVK 50
            +  R+  E     V  I +     INP     +  +V  +            T+     
Sbjct: 29  GSTLRIIEEP-QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP 87

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----IEDCKKPIVAAV 105
            +VL  +   F+ G D+ +F ++   GD + + D +   V  +         +   +A V
Sbjct: 88  HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALV 147

Query: 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165
           +G ALGGG E A+ CH  IA     +GLPE+   + PG G    + + +    A ++ML 
Sbjct: 148 QGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLE 207

Query: 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204
               ++E+   +GL+D VV   + +          + R 
Sbjct: 208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI-RESKRT 245

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  188 bits (480), Expect = 4e-55
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 7/193 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
                  TL  P   NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   +
Sbjct: 14  RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY 72

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +       +  M  +  E+++  +       +A   G   G G++L   C  R   P+  
Sbjct: 73  ETQSEGDLLLRMVRI--EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
             +P L  G++    GT+R   +VG  +A+ ++  +++  ++E  ++G +       +  
Sbjct: 131 FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWP 187

Query: 191 KVSRLWALDIAAR 203
            +    A    A 
Sbjct: 188 ALIDAAAEAATAL 200

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  189 bits (482), Expect = 4e-55
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +  + IITL  P   N++   +  GL   ++  T     +A V+TG G  FS G D    
Sbjct: 35  DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYL 94

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++    D+          +V  +  C+ P+VAAV G A+G G  L         A    
Sbjct: 95  KELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAY 154

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           L  P + +G++   GG    P  + L  A E  L    I+++   +LGL + V   ++ +
Sbjct: 155 LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212

Query: 191 KVSRLWALDIAA 202
             +   A  I  
Sbjct: 213 AEAIACAKKILE 224

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  189 bits (482), Expect = 6e-55
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V ++     +A++TL  P   NA+A  ++   K    + +  +DV+A+V+TG G  F  G
Sbjct: 25  VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            D      +         P +++        V+  +    +P++AA+ G A+GGGL LA+
Sbjct: 85  ADQKSAGPI-PHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLAL 143

Query: 119 GCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
            C  R+A+         +  G+     G +  LPR +G S+A ++ML  + + ++E  ++
Sbjct: 144 ACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERI 203

Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
           GL+   V SE LL+        IA  
Sbjct: 204 GLVSRKVASESLLEECYAIGERIAGF 229

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  188 bits (479), Expect = 6e-55
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 3/193 (1%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G D+   +
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66

Query: 72  KVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +V   G           + + + +    KP VAAV G A+ GG  LA+ C   +   + +
Sbjct: 67  RVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEAR 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
           LG  E+ +G +     +  L R VG   A +++L  + + + E   LGL++ +    + L
Sbjct: 127 LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKAL 185

Query: 191 KVSRLWALDIAAR 203
           + ++  A ++A  
Sbjct: 186 EEAKALAEEVAKN 198

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  188 bits (479), Expect = 7e-55
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
             P V +E   D + IIT+  P   N++   +   L D  +   +   +   +LTG GG 
Sbjct: 13  TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+  F      G+      V    +        KP++AAVEG AL GG ELA+  
Sbjct: 72  FCAGMDLKAFA----RGE---NVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
              +AA  +  G+PE+  G++ G GG  RLP  +  + A+E+ L   ++++E    LG++
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMV 184

Query: 181 DAVVTSEELLKVSRLWALDIAA 202
           + +      L  +   A  I A
Sbjct: 185 NVLAEPGAALDAAIALAEKITA 206

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  187 bits (476), Expect = 3e-54
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 8/198 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR------FSGGF 65
            G+A I +  P   NA     V  L D F  A   + +  ++LTG G        F  G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           D +V  +  G  D    P ++V  +  LI    K ++A V G A+GGG  L + C   IA
Sbjct: 78  DQSVRGE-GGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIA 136

Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
           A     G     +G   G  G+  L R+VG  KA E+  L +  +++E  ++G+++ VV 
Sbjct: 137 ADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVP 196

Query: 186 SEELLKVSRLWALDIAAR 203
            + L +    WA +I ++
Sbjct: 197 VDRLEEEGIQWAKEILSK 214

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  186 bits (475), Expect = 3e-54
 Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 4/200 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +      +G+  + +                  D F + +   D + ++LTG+G  +   
Sbjct: 25  LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            D      V    +         +++ N + D + P+++AV G AL    E  +     +
Sbjct: 85  IDFPSLGDVTNPREWDKTYWEGKKVLQN-LLDIEVPVISAVNGAALLHS-EYILTTDIIL 142

Query: 125 AAPKTQL-GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           A+  T    +P L  G++PG G     P  +GL +    +   + +T+++ ++L ++  V
Sbjct: 143 ASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV 202

Query: 184 VTSEELLKVSRLWALDIAAR 203
           +   +L++ +   A  +A +
Sbjct: 203 LPQSKLMERAWEIARTLAKQ 222

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  186 bits (474), Expect = 5e-54
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF +   
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
               G   V     ++      +++ I   K+P++AA+ G+A GGGL +++     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129

Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189

Query: 188 ELLKVSRLWALDIAA 202
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  185 bits (473), Expect = 7e-54
 Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 10/210 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +  EV +   A ITL  P   NAL+  ++  L+  + EA + D V  +V+TG G 
Sbjct: 8   DSFDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGR 66

Query: 60  RFSGGFDINVFQK-----VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
            F  G D+    +            +     + +          KP++ AV G+  G G+
Sbjct: 67  AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML--LSKSITSE 172
           +        IA+ +     P +++G++ G     R+ R++  S A+ M L    + ++++
Sbjct: 127 DWVTTTDIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185

Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
             ++LGLI  +V  + LL+ +   A  + +
Sbjct: 186 RAYELGLISEIVEHDRLLERAHEIADIVNS 215

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  183 bits (466), Expect = 4e-53
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 4/193 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA +TL  P   NA    + A +    ++A +  +V+ +V+TG G  F  G D++  
Sbjct: 10  KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV 69

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                  D   +       ++  +   +KP+VAAV G A G G+ LA+ C  R+ + K  
Sbjct: 70  T---EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
                + +G++P  G    LPRLVG +KA+E+ +L + +T+EE   LGL   V+   +  
Sbjct: 127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWE 186

Query: 191 KVSRLWALDIAAR 203
           +  + +A  ++A 
Sbjct: 187 EEVKQFAERLSAM 199

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  182 bits (465), Expect = 6e-53
 Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           ++   +  EV ++GV  +TL   P + L+  ++A L D    A   D V  +V+ G G  
Sbjct: 3   LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRI 62

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSV----ELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           F  G D+    +     D        +      ++  +  C KP +A VEG+A   GL+L
Sbjct: 63  FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQL 122

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C    A+P  +  LP +  G          + R++G     EM L   +  ++    
Sbjct: 123 MAACDLAYASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALA 181

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
            GLI+ ++    L       A  +AAR
Sbjct: 182 AGLINRILPEAALATHVADLAGALAAR 208

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  182 bits (465), Expect = 6e-53
 Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P V +E     V  + L  P   NA+  P  A L   F E  +  +    VL G+ G F
Sbjct: 10  QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTF 68

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G  ++       +           KP++AA+ G A+ GG+ELA+ C 
Sbjct: 69  CAGADLKAMGTDRGN-ELHPHGPGPMGPS---RLRLSKPVIAAISGHAVAGGIELALWCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
            R+      LG+     GV    GGT RLPRL+G S+A++++L  + + + E   +GL++
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVN 184

Query: 182 AVVTSEELLKVSRLWALDIAA 202
            VV   +  + +   A +IAA
Sbjct: 185 RVVARGQAREAAETLAAEIAA 205

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  182 bits (465), Expect = 6e-53
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 9/196 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GV ++T+                L   F +     + K ++LTG G  F    D   F
Sbjct: 23  DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF 82

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
                 G      ++  E   ++N +   + P++AAV G  +    E+ +     +AA  
Sbjct: 83  N----LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAES 137

Query: 129 TQLG-LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
                 P    G++PG G     P ++G ++    +L  + + +      G ++ V++ +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197

Query: 188 ELLKVSRLWALDIAAR 203
           ELL  +   A  IA +
Sbjct: 198 ELLPRAWELARGIAEK 213

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  183 bits (466), Expect = 7e-53
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 4/194 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA +TL  P   NAL     A L+D   E + R  V+A+VL G G  F  G D++   
Sbjct: 25  DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII 84

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               + D + + D +     VV  + +C  P++AA+ G+A G G  LA+    R+A P T
Sbjct: 85  GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST 144

Query: 130 QLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
           +       +G+  G  G    LPR+VGL  A  +++L  ++ + E  ++GLI  +     
Sbjct: 145 RFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGR 204

Query: 189 LLKVSRLWALDIAA 202
             + +R  A  +A 
Sbjct: 205 ADEAARTLARRLAD 218

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  182 bits (464), Expect = 7e-53
 Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  V +E   D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F
Sbjct: 6   ADEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+  F    G   +S        +        +KPI+AAVEG AL GG EL + C 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV------PPRKPIIAAVEGFALAGGTELVLSCD 116

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             +A    + G+PE+  G++ G GG  RLP  +    A+E+ L  +S T+E+  K G I+
Sbjct: 117 LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176

Query: 182 AVVTSEELLKVSRLWALDIAA 202
            +V   + L  +   A  I A
Sbjct: 177 RLVDDGQALDTALELAAKITA 197

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  183 bits (466), Expect = 1e-52
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 11/234 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V  E    GVAIIT       NA    + AG     + A +   ++ IVLTG G 
Sbjct: 26  DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVS------VELVVNLIEDCKKPIVAAVEGLALGGG 113
            F  G  +       G          +       E   + +   +KP++AA+ G  +G G
Sbjct: 86  GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
           L  A+ C  R AA   +        G+I  FG +  LPRL   + A++++L  ++  +EE
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----WIRSLHRTDKLGSLSEA 223
             +LGL+  VVT E+L+  +  +A DIA    P     I+     D    + EA
Sbjct: 206 AAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA 259

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  178 bits (454), Expect = 2e-51
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +++E  +  V  I L  P   NA+  P++  L     +A + + V+A++LTG G 
Sbjct: 3   GSMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+        A         +   VV  I    KP++A V G A+G G  LA+ 
Sbjct: 62  AFCSGGDLTGGDTAGAAD--------AANRVVRAITSLPKPVIAGVHGAAVGFGCSLALA 113

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +AAP +   L    +G++P  G +  LP L+G ++   M + ++ I++   ++ G+
Sbjct: 114 CDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           I  + +++E   V       ++  
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGG 197

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  177 bits (450), Expect = 1e-50
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 7/207 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +  +V +D +A ITL  P   NA    ++  L   +  A   +DV  IVL  NG 
Sbjct: 17  RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+     V     +  +        +       +  KP +AAV+G  + GGL L
Sbjct: 76  HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C   IAA       P + + +  G          +G  KA E++   +++T+EE  +
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQ 193

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
            G+++ VV  + L   +R  A +IA  
Sbjct: 194 TGMVNRVVPRDRLDAETRALAGEIAKM 220

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  177 bits (450), Expect = 2e-50
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F 
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFT 92

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ + 
Sbjct: 93  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152

Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
               P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V      
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212

Query: 190 LKVSRLWALDIAAR 203
            K         A  
Sbjct: 213 QKEVWTRLKAFAKL 226

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  175 bits (446), Expect = 4e-50
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   +  E+  D V ++T+      NA    ++  ++ + + A +  +V+ IVL  NG 
Sbjct: 1   MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELA 117
            FS G D+   Q +    +   + D S+ L  ++  I    KP +A V+G A GGG  LA
Sbjct: 60  HFSAGADLTWMQSMANFTEEENLED-SLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
             C   IA+   +    E+ LG+IP    +  + R +G   A  + + ++   +   + L
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPA-VISPYVVRAIGERAAKMLFMSAEVFDATRAYSL 177

Query: 178 GLIDAVVTSEELLKVSRLWALDIAA 202
            L+   V  + LL+ +  +A  I+ 
Sbjct: 178 NLVQHCVPDDTLLEFTLKYASQISN 202

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  178 bits (454), Expect = 2e-49
 Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-- 57
           +    V +E   DGVA +T+      NA     V  ++   + A     V+  +L G   
Sbjct: 164 VEMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVM 222

Query: 58  ------GGR-FSGGFDINVFQK--------------VHGAGDVSLMPDVSVELVVNLIED 96
                 G R FS G ++    +               +    V  +              
Sbjct: 223 SHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPR 282

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
            +KP VAAV+G A+GGG +L +     +A+      LP    G+IPG     RL R  G 
Sbjct: 283 IEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGP 341

Query: 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
             + +++L  + I ++E     L+D VV  +EL          +  
Sbjct: 342 RVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG 387

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  174 bits (443), Expect = 5e-49
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-------FSG 63
           +D    +    P V NA     V  L    + A    DV  ++LTGNG         F  
Sbjct: 64  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 123

Query: 64  GFDINVFQK---------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D  +  +              DV+    + +  V  LI    K ++  V G A GGG 
Sbjct: 124 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 183

Query: 115 ELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
            L + C   +A+ +  +    +  +G   G  G+  L R VG   A E+  L ++ T+E+
Sbjct: 184 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 243

Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
             ++G ++AV    EL  V   WA +I A+
Sbjct: 244 MHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  171 bits (437), Expect = 9e-49
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 12/203 (5%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+    
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMA 71

Query: 72  KVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
                     +  ++  L            +IE C KP++AA+ G  +GGG++L   C  
Sbjct: 72  SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLID 181
           R         + E+ +G+    G  QRLP+++G  S   E+   ++ + ++E    GL+ 
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVS 191

Query: 182 AVV-TSEELLKVSRLWALDIAAR 203
            V    + +L  +   A DI+++
Sbjct: 192 RVFPDKDVMLNAAFALAADISSK 214

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  169 bits (430), Expect = 7e-48
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               +++  +      II LINP   NAL       L +  E A    DV   ++  +G 
Sbjct: 6   RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLAL 110
            FS G D     K  G        + S  +         V +      K ++  + G A+
Sbjct: 65  FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124

Query: 111 GGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           G    L   C    +   K  L  P   LG+I   G T  LP   G +   E ++ +K  
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 184

Query: 170 TSEEGWKLGLIDAVVTSEELL------KVSRLWALDIAAR 203
             +   + G I                KV       +   
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  169 bits (431), Expect = 7e-48
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+ P +  +    GV  +TL  P   NAL+  ++A L + F      + V+A+VL  +G 
Sbjct: 22  MSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK 81

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+   +          +     +++   I+    P++A V G+A   G +L   
Sbjct: 82  AFCAGHDLKEMRAEPSREYYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAM 140

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +A    +  +  + +G+     G   L R VG   A EM++  + +++++   LGL
Sbjct: 141 CDLAVATRDARFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGL 199

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           ++ VV  + L          I A+
Sbjct: 200 VNRVVAPKALDDEIEAMVSKIVAK 223

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  164 bits (417), Expect = 8e-46
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 3/204 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            + PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G 
Sbjct: 29  ESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP 88

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+    +  G  D       +   V+  I +   P++A V GLA   G +L   
Sbjct: 89  VFSSGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVAS 147

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
           C   +A+ K+    P + +G+     G   L R V    A+EM+   + I+++E    GL
Sbjct: 148 CDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGL 206

Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
           +  VV   EL + +   A  IA+ 
Sbjct: 207 LSKVVPEAELQEETMRIARKIASL 230

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  170 bits (432), Expect = 1e-45
 Identities = 59/320 (18%), Positives = 110/320 (34%), Gaps = 30/320 (9%)

Query: 12  NDGVAIITL-----------INPPVNALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG 59
           N  VA + +               +N+  + +   L D  +       +V+ +VLT    
Sbjct: 28  NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD 87

Query: 60  R-FSGGFDINVFQK--VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           R F  G +I +          +     + +   + +         +AAV G   GGG EL
Sbjct: 88  RVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYEL 147

Query: 117 AMGCHARIAA--PKTQLGLPELT-LGVIPGFGGTQRL--PRLVGLSKAIEMMLLSKSITS 171
           A+ C          + + LPE+  LGV+PG GG  R+   R V   +A     + + +  
Sbjct: 148 ALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG 207

Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-------RKPWIRSLHRTDKLGSLSEAR 224
           E      L+D VV   +  +  +  AL++AA+       +   +  + RTD+   L+   
Sbjct: 208 ERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKT 267

Query: 225 ---EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281
               + +  R+          +  A +D I     +       +E       +  +    
Sbjct: 268 LDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAV 327

Query: 282 LVHVFFAQRATSKVPNVTDI 301
              VF  +     +      
Sbjct: 328 GTWVFRTEGDARHLLAADAS 347

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 90  VVNLIEDCKKPIVAAVE-GLALGGGL-ELAMGCHARI-------AAPKTQLGLPELTLGV 140
            +  I+   + + A +E G    G   ELA                 +  + L E+  G+
Sbjct: 367 TLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL 426

Query: 141 IPGFGGTQRLP-RLVGLSKAIEMML--LSKSITSEEGWKLGLIDAV 183
            P      RL  R    ++ ++ +   + ++I   E  +LGL+ A 
Sbjct: 427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTAS 472

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  158 bits (403), Expect = 4e-44
 Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 6/203 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    + +      V  IT   P   N +   ++        +      V  +VL G   
Sbjct: 4   VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQC-ETSTVTVVVLEGLPE 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D     +    G         +  +   ++      ++ V G    GGL     
Sbjct: 62  VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSA 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IA       L EL  G+ P       L R +G  KA  M L++K I+ +E  + GL
Sbjct: 122 TDIAIADQTASFSLSELLFGLYPA-CVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGL 180

Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
           IDA     ++L   R   L +  
Sbjct: 181 IDAFDAESDVL--LRKHLLRLRR 201

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  159 bits (403), Expect = 2e-43
 Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 32/219 (14%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D VA IT   P   NA+       L    E A    DV  I+++G G  F  GFD++ + 
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYA 102

Query: 72  KVHGAGDVSLMPDVSVEL----------------------------VVNLIEDCKKPIVA 103
           +   +       + +V                                  +  C KP V 
Sbjct: 103 EGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVV 162

Query: 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
            + G  + GG ++A+     IAA   ++G P + +  +P  G        +G  +A  ++
Sbjct: 163 KIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLL 219

Query: 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
                IT  +  + GL        +L   +      IAA
Sbjct: 220 FTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA 258

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  153 bits (390), Expect = 2e-42
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +         G   VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG
Sbjct: 8   LVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG 66

Query: 60  RFSGGFDINVFQKVHGAGD-VSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++             +  + + E+  ++  I + + P++AA++G    GG  L
Sbjct: 67  TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGL 126

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
              C   +A P++   L E  +GV P       LP+L     A    L  +   +    +
Sbjct: 127 VGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEE 185

Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
           +GLI      E+L         D+  
Sbjct: 186 IGLITMAA--EDLDAAIDQLVTDVGR 209

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 97.5 bits (243), Expect = 8e-22
 Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 1   MAAPRVTMEV----GNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLT 55
            A   V  +         V ++TL      NAL + +V  +  +         +  +VL 
Sbjct: 34  FATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93

Query: 56  GNGGR-FSGGFDINVFQKVHGAGDVSLMPDV----SVELVVN-LIEDCKKPIVAAVEGLA 109
           G+G + F  G D+        A    +          E  ++ L+    KP++   +G+ 
Sbjct: 94  GSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIV 153

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
           +GGGL L  G   ++    +++ +PE+T+G+ P  GG+  L R+ G    + + L +  +
Sbjct: 154 MGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHM 212

Query: 170 TSEEGWKLGLIDAVVTSEEL 189
            + +   +GL D  +  ++ 
Sbjct: 213 NAADACYVGLADHYLNRDDK 232

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           AA  V +        +ITL  P   NAL + ++  +  + ++     +   I++ G GG+
Sbjct: 4   AAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 61  -FSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G DI V  +   A           E ++N  +  C+KP VA + G+ +GGG+ L++
Sbjct: 63  AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
               R+A  K    +PE  +G+ P  GG   LPRL G      + L    +   + ++ G
Sbjct: 123 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAG 181

Query: 179 LIDAVVTSEEL 189
           +    V SE+L
Sbjct: 182 IATHFVDSEKL 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 88/603 (14%), Positives = 189/603 (31%), Gaps = 147/603 (24%)

Query: 36  LKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDI------NVFQKVHGAGDVSLMPDVS 86
           ++D  +   S++++  I+++ +   G      F         + QK     +V L  +  
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKF--VEEV-LRINYK 92

Query: 87  VELVVNLIEDCKKPIVAAVEGLA----LGGGLELAMGCHARIAAPKTQL--GLPELTLG- 139
             L+  +  + ++P +     +     L    ++    +     P  +L   L EL    
Sbjct: 93  F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 140 --VIPGFGGTQRLPRLVGLSK---AIEMMLLSKSITSEEG----W-KLGLIDAVVTSEEL 189
             +I G  G+       G  K   A+++  LS  +  +      W  L   +   + E +
Sbjct: 152 NVLIDGVLGS-------G--KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCN---SPETV 198

Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249
           L+   L  L          RS H ++    +   +  L+  RL   K       ++ CL 
Sbjct: 199 LE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSK------PYENCLL 248

Query: 250 VIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFAQRATSKVPNVTDIGLKPRGV 308
           V+            ++ AK +      + + + L+        T++   VTD  L     
Sbjct: 249 VLLN----------VQNAKAWN---AFNLSCKILL--------TTRFKQVTDF-LSAATT 286

Query: 309 RKVAVI--GGGLMGSGIAT--AHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTR-- 361
             +++      L    + +     L+     L +EV +    + +  I  ++R  +    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWD 345

Query: 362 --GKLTQDKANNALKMLKGVLDYSEFKD--VDMVIEAVIESVPLKQKIFSELEKACPPHC 417
               +  DK    ++    VL+ +E++     + +     S  +   +            
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL----------S 393

Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVRTERTSAQV---ILDL 472
           ++  +    D+ +V  K      ++          +P   LE+         +   I+D 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRA---FFPY----------SQSARLLVSLGVDVFR-I 518
                I K                    F+ +           +   L   + +D FR +
Sbjct: 453 Y---NIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFL 503

Query: 519 DSAIRSFGLPIGPFQ-----LLDLAGYGVAAATSKEF---DKAFPDRSFQSPLVDLLLKS 570
           +  IR               L  L  Y       K +   +    +R   + ++D L K 
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNA-ILDFLPKI 555

Query: 571 GRN 573
             N
Sbjct: 556 EEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 54/384 (14%), Positives = 99/384 (25%), Gaps = 134/384 (34%)

Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQ--KIFSELEKACPPHCILATNTSTID 427
            +   M K +L   E   +      ++    +    ++F  L                  
Sbjct: 36  KDVQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLL----------------- 72

Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMP---LLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
                   S Q+ ++   F      +    L+  ++TE+    ++  +      I++   
Sbjct: 73  --------SKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-----IEQRDR 118

Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD-LAGYG-- 541
           +      +  N+ F  Y+      VS      ++  A+    L      L+D + G G  
Sbjct: 119 L------YNDNQVFAKYN------VSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT 164

Query: 542 -VAAAT--SKEFDKAFPDRSF-------QSP------LVDLLLKSGRNGKANGKGLYTYE 585
            VA     S +       + F        SP      L  LL +   N  +        +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 586 KGSKPKPDPSVLPIIEECRRLSNIMPGGK-PIS------VTEKEIVEMILFPVVNESCRV 638
                      L I      L  ++              V   +      F   N SC++
Sbjct: 225 -----------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F---NLSCKI 268

Query: 639 LEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWS---------Q 688
           L   +  R        V                D + A    + SL   S          
Sbjct: 269 L---LTTR-----FKQV---------------TDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 689 LYGNFF--KPSRFLEERATKGIPL 710
           L   +   +P   L        P 
Sbjct: 306 LLLKYLDCRPQD-LPREVLTTNPR 328

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 36/289 (12%), Positives = 71/289 (24%), Gaps = 97/289 (33%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDV--KAIVLTGNG 58
            +  ++ +      +  +    P  N L +     L           +V           
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L----------LNVQNAKAW----- 259

Query: 59  GRFSGGFDINVFQKVHGAGDVSLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
                 F+++   K+       L+      V   ++        +      L       L
Sbjct: 260 ----NAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP----GFG-----GTQRLPRL--VG---LSKAIEM 162
                 +    + Q  LP   L   P            G         V    L+  IE 
Sbjct: 307 L----LKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 163 ML--LSKSITSEEGWKLGLI--DAVVTSEELLKVSRLWA-------LDIAA--------- 202
            L  L  +   +   +L +    A + +  L   S +W        + +           
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 203 -RRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ-HQACLD 249
            + K    S+       S+           L+ K    N    H++ +D
Sbjct: 419 KQPKESTISIP------SIY----------LELKVKLENEYALHRSIVD 451

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 613 GKPISVTEKE----IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIV 668
           G+P   + K           F  +NE+ +++E G V    D+D A  LG++ P    G  
Sbjct: 5   GRPQIDSSKATDKINPMDFTFVEINEAVKLVEMG-VATPQDIDTAIKLGLNRPF---GPF 60

Query: 669 FWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKG 707
             A   GA  +   L++ ++ +G   F+P++ L+E   + 
Sbjct: 61  ELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEE 100

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 476 GKIIKKVPVVVGNCTGFAVNRA--FFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGP 531
           G    + P +  +     +N     F     A  LV +GV     ID+AI+     P GP
Sbjct: 1   GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKG 580
           F+L    G    A   +E  K F  + F+ +  +              +G
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAGKAEG 109

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 56/202 (27%)

Query: 15  VAIITL---INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINV 69
           V +  +   I                     A  +D+ +AI++  +  GGR     +I  
Sbjct: 10  VYVAQIKGQITSYTYDQ-------FDRYITIA-EQDNAEAIIIELDTPGGRADAMMNI-- 59

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAA 126
                                V  I+  K P++  V      A   G  +A+G H    A
Sbjct: 60  ---------------------VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMA 98

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVG----------------LSKAIEMMLLSKSIT 170
           P T +G     LG        +  P +                   + A E +    S+T
Sbjct: 99  PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 158

Query: 171 SEEGWKLGLIDAVVTS-EELLK 191
            EE  K G+I+ V     ELLK
Sbjct: 159 PEEALKYGVIEVVARDINELLK 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	724
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.88
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.87
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.79
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.79
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.77
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.77
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.75
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.74
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.72
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.7
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.69
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.69
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.67
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.65
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.64
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.64
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.63
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.63
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.63
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.62
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.62
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.59
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.59
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.55
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.54
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.53
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.52
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.51
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.51
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.51
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.5
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.49
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.48
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.47
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.47
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.46
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.46
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.45
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.45
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.45
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.45
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.45
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.42
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.42
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.42
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.42
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.41
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.41
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.41
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.41
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.41
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.4
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.39
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.39
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.37
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.37
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.36
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.36
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.35
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.34
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.33
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.32
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.31
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.3
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.29
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.29
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.28
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.27
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.26
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.24
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.23
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.22
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.21
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.2
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.19
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.19
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.17
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.14
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.14
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.13
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.12
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.11
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.08
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.07
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.06
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.06
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.05
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.03
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.03
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.02
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.95
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.47
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.92
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.9
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.87
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.86
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.82
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.79
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.78
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.78
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.76
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.76
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.74
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.73
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.71
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.7
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.69
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.67
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.66
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.64
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.64
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.63
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.62
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.62
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.61
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.58
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.56
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.49
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.46
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.45
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.45
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.44
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.44
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.44
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.43
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.4
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.39
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.3
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.3
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.29
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.28
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.28
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.27
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.27
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.24
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.23
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.23
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.22
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.22
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.22
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.22
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.19
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.18
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.17
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.15
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.14
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.13
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.13
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.13
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.12
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.11
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.11
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.1
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.09
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.09
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.09
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.07
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.05
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.02
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.02
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.99
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.98
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	97.98
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.97
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.96
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.96
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.95
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.86
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.84
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.83
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.82
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.79
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.76
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.71
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.71
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.7
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.69
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.66
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.62
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.61
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.59
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.59
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.58
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.57
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.54
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.53
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.53
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.46
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.44
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.41
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.35
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.33
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.32
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.32
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.31
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.26
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.23
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.23
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.23
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.22
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.21
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.21
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.19
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.16
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.15
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.13
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.12
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.12
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.11
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.11
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.09
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.09
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.08
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.08
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.05
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.04
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.03
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.02
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.0
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.98
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.98
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.97
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.96
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.95
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.94
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.93
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.92
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.89
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.87
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.85
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.84
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.81
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.81
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.8
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.8
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.78
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.76
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.74
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.73
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.72
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.72
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.71
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.71
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.67
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.67
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.59
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.58
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.58
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.55
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.55
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.53
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.52
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.52
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.51
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.48
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.47
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.44
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.41
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.4
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.36
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.33
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.32
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.29
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.26
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.23
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	96.23
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.21
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.21
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.2
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.16
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.11
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.1
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.08
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.04
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.01
1ydw_A	362	AX110P-like protein; structural genomics, protein	95.97
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	95.92
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.87
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.84
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.83
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.83
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.82
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.78
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.77
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	95.76
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.73
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.72
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.67
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	95.63
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.61
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.57
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.55
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.54
4had_A	350	Probable oxidoreductase protein; structural genomi	95.54
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.53
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.53
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.51
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.47
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.47
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.47
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.45
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.43
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.39
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.34
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.14
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.13
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.08
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.06
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.04
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.03
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.02
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	94.99
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.98
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.98
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.94
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.89
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	94.8
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.78
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.76
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.74
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.66
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	94.65
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.63
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.56
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	94.56
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.51
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.47
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	94.45
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	94.37
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.36
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	94.35
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.35
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	94.3
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.29
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.28
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.27
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	94.27
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.18
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.15
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.15
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.03
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.02
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.0
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	94.0
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	93.98
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.98
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.98
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	93.92
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	93.91
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.83
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	93.8
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	93.73
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	93.7
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.7
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.67
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.63
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.61
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.55
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.53
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	93.49
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.49
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	93.48
4h3v_A	390	Oxidoreductase domain protein; structural genomics	93.46
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	93.46
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.42
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.41
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	93.37
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.36
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	93.31
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.25
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.24
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.2
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.17
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	93.14
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.13
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.09
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.09
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	93.08
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.07
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.03
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.01
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.97
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.96
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	92.96
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	92.94
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.93
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.93
1lnq_A	336	MTHK channels, potassium channel related protein;	92.92
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	92.91
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.91
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.91
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.87
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.87
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	92.83
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	92.82
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.8
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.73
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	92.63
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.62
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	92.61
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	92.61
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.61
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	92.6
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	92.59
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	92.54
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.48
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.48
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	92.48
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	92.48
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.47

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=5.5e-134  Score=1166.72  Aligned_cols=688  Identities=34%  Similarity=0.556  Sum_probs=613.0

Q ss_pred             EEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHH
Q 004918            8 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (724)
Q Consensus         8 ~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (724)
                      ++. +|+|++||||||+.|+||.+|+++|.++++++++|+++|+|||||.|+.||+|+||+++......       ....
T Consensus        25 ~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~-------~~~~   96 (742)
T 3zwc_A           25 LRL-PHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG-------LALG   96 (742)
T ss_dssp             EEC-STTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSC-------SHHH
T ss_pred             EEe-eCCEEEEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChh-------HHHH
Confidence            444 78999999999999999999999999999999999999999999999999999999998653221       1234


Q ss_pred             HHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCC
Q 004918           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (724)
Q Consensus        88 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~  167 (724)
                      +++ ++|.++||||||+|||+|+|||++|+|+||||||+++++|++||+++|++|++|++++|||++|..+|++|++||+
T Consensus        97 ~~~-~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~  175 (742)
T 3zwc_A           97 SLV-DEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGK  175 (742)
T ss_dssp             HHH-HHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             HHH-HHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCC
Confidence            566 7799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004918          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC  247 (724)
Q Consensus       168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  247 (724)
                      +++|+||+++||||+|+|++. .+++.++|++++.+++...+...+..  .........+.......+++.++++|+..+
T Consensus       176 ~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~  252 (742)
T 3zwc_A          176 YLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKPV--PSLPNMDSVFAEAIAKVRKQYPGVLAPETC  252 (742)
T ss_dssp             CEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSCC--CCCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhcccc--cccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence            999999999999999998775 57889999999999876544332221  222222334445555667788899999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCC---CCCCCCCCcceEEEEcCCCCcHHHH
Q 004918          248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT---DIGLKPRGVRKVAVIGGGLMGSGIA  324 (724)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~---~~~~~~~~~~kI~VIG~G~mG~~iA  324 (724)
                      +++++.+...+++++++.|++.|.+++.|+++++++++|+++|+++|.+...   ..+...++|+||+|||+|+||++||
T Consensus       253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA  332 (742)
T 3zwc_A          253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIA  332 (742)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHH
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999998865322   2244567899999999999999999


Q ss_pred             HHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcccCChHHHHH
Q 004918          325 TAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQK  404 (724)
Q Consensus       325 ~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~~k~~  404 (724)
                      ..++.+|++|+++|++++.++++.+.+.+.+++.+.++..+..  .....+++.+++++++++||+|||||+|++++|++
T Consensus       333 ~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~iK~~  410 (742)
T 3zwc_A          333 ISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKK  410 (742)
T ss_dssp             HHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHHHHHH
T ss_pred             HHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHHHHHH
Confidence            9999999999999999999999999999888887776654422  23446788899999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004918          405 IFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV  484 (724)
Q Consensus       405 v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v  484 (724)
                      +|+++++++++++||+||||++++++++..+.+|+||+|+|||||++.+++||||+++.|++++++.+.++.+.+||+||
T Consensus       411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV  490 (742)
T 3zwc_A          411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  490 (742)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC-------
Q 004918          485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-------  557 (724)
Q Consensus       485 ~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~-------  557 (724)
                      +++|+||||+||++.++++|+++++++|+++++||.++..+|||||||+++|++|||+.+++.+.++...++.       
T Consensus       491 ~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~  570 (742)
T 3zwc_A          491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVR  570 (742)
T ss_dssp             ECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTT
T ss_pred             ccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhh
Confidence            9999999999999999999999999999999999999988999999999999999999999999876543321       


Q ss_pred             ----CCCcHHHHHHHHcCCCCcccCccceeccCCC--CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHH
Q 004918          558 ----SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPV  631 (724)
Q Consensus       558 ----~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  631 (724)
                          ..+++++++|+++|++|+|||+|||+|++++  ...+++++..++...+......+    ..++.++|++|+++++
T Consensus       571 ~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ei~~R~l~~~  646 (742)
T 3zwc_A          571 KRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSL  646 (742)
T ss_dssp             EETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCC----CCCCHHHHHHHHHHHH
T ss_pred             hcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCc----CCCCHHHHHHHHHHHH
Confidence                1146799999999999999999999998643  34577777777665544333332    3578899999999999


Q ss_pred             HHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC--CCCCCHHHHHHHHcCC-
Q 004918          632 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGI-  708 (724)
Q Consensus       632 ~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~k~g~-  708 (724)
                      +||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.|+++++.+|+  +|+|+++|++|+++|+ 
T Consensus       647 ~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~  726 (742)
T 3zwc_A          647 INEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSP  726 (742)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCC
T ss_pred             HHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999985  8999999999999997 


Q ss_pred             CCCCC
Q 004918          709 PLSAP  713 (724)
Q Consensus       709 gfy~~  713 (724)
                      +||+|
T Consensus       727 ~f~~~  731 (742)
T 3zwc_A          727 PLKEW  731 (742)
T ss_dssp             CGGGH
T ss_pred             ccccc
Confidence            47777

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-125  Score=1105.35  Aligned_cols=706  Identities=58%  Similarity=0.958  Sum_probs=595.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccCCCCchhhhhccCC--C
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGA--G   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~--~   77 (724)
                      |+++.+.++..+++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++......  .
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   82 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK   82 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECTTTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence            56677889833789999999999889999999999999999999999999999999 76 99999999998542211  0


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ....+....++++ ++|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~  161 (725)
T 2wtb_A           83 EPKAGYISIDIIT-DLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT  161 (725)
T ss_dssp             CCSSSHHHHHCCC-CCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHH-HHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence            0112222333444 568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccC-ch--hhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR-KP--WIRSLHRTDKLGSLSEAREVLKLARLQA  234 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.+++++++..+ +.  ..+.  + .+.+........+..++...
T Consensus       162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~--~-~~~~~~~~~~~~~~~a~~~~  238 (725)
T 2wtb_A          162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSK--T-DKLPPLGEAREILTFAKAQT  238 (725)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGC--C-TTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhh--c-cccCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998872 22  1210  0 01111222233555566655


Q ss_pred             H-HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEE
Q 004918          235 K-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAV  313 (724)
Q Consensus       235 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~V  313 (724)
                      + ++++ |||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++....+..+++|+||+|
T Consensus       239 ~~~~~g-~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~V  317 (725)
T 2wtb_A          239 LKRAPN-MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAI  317 (725)
T ss_dssp             HHHCTT-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEE
T ss_pred             HHhccC-CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEE
Confidence            4 4555 9999999999999999999999999999999999999999999999999999998763211334567899999


Q ss_pred             EcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEE
Q 004918          314 IGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE  393 (724)
Q Consensus       314 IG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIe  393 (724)
                      ||+|.||++||.+++++|++|++||++++.++++.+.+++.++++++.|.++..+.....++++.+++++++++||+||+
T Consensus       318 IGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIe  397 (725)
T 2wtb_A          318 IGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIE  397 (725)
T ss_dssp             ECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEE
T ss_pred             EcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEE
Confidence            99999999999999999999999999999999998889999999999999988878888899999999988999999999


Q ss_pred             cccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHH
Q 004918          394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLM  473 (724)
Q Consensus       394 av~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~  473 (724)
                      ||||+.++|+++++++.+++++++||+||||++++++++..+.++++|+|+|||+|++.++++|+++|+.|++++++.+.
T Consensus       398 aVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~  477 (725)
T 2wtb_A          398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLL  477 (725)
T ss_dssp             CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHh
Q 004918          474 TVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKA  553 (724)
Q Consensus       474 ~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~  553 (724)
                      ++++.+||+|+++++.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++.
T Consensus       478 ~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~  557 (725)
T 2wtb_A          478 DVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIEN  557 (725)
T ss_dssp             HHHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999998


Q ss_pred             CCCC-CCCcHHHHHHHHcCCCCcccCccceeccCCCCCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHH
Q 004918          554 FPDR-SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVV  632 (724)
Q Consensus       554 ~~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  632 (724)
                      ++++ +.| +++++|+++|++|+|||+|||+|++.++..+|+++..++...+....+.+..+...+++++|++|++++++
T Consensus       558 ~~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~  636 (725)
T 2wtb_A          558 FSERTYKS-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVV  636 (725)
T ss_dssp             SGGGCCCC-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCccCCh-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHH
Confidence            8876 336 99999999999999999999999632222477888777654332111101111113678999999999999


Q ss_pred             HHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcCCCCCC
Q 004918          633 NESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  712 (724)
Q Consensus       633 ~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g~gfy~  712 (724)
                      ||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|++|.|+++|++|+++|++||+
T Consensus       637 nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~~  716 (725)
T 2wtb_A          637 NEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSA  716 (725)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 004918          713 P  713 (724)
Q Consensus       713 ~  713 (724)
                      .
T Consensus       717 ~  717 (725)
T 2wtb_A          717 P  717 (725)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=5.1e-125  Score=1099.79  Aligned_cols=696  Identities=30%  Similarity=0.525  Sum_probs=615.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccCCCCchhhhhccCCC--
Q 004918            3 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG--   77 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~--   77 (724)
                      .+.+.++..+++|++||||||  +.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++.......  
T Consensus         5 ~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   83 (715)
T 1wdk_A            5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDA   83 (715)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHH
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHH
Confidence            356888833789999999999  579999999999999999999999999999999 76 999999999986532111  


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ....+....++++ ++|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        84 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           84 ELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            1111223345566 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccC--CCC-CcHHHHHHHHHHHH-H
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD--KLG-SLSEAREVLKLARL-Q  233 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~  233 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.+++++++....++.... +..  +.. +.......+..++. .
T Consensus       163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~k~~~  241 (715)
T 1wdk_A          163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR-QPKLEKLKLNAIEQMMAFETAKGFV  241 (715)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH-GGGGSCCSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc-ccccCccccCchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988621111110 000  000 10111112333443 3


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEE
Q 004918          234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAV  313 (724)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~V  313 (724)
                      .|+++++||||..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++.+. + .+++++||+|
T Consensus       242 ~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~V  319 (715)
T 1wdk_A          242 AGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAV  319 (715)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEE
T ss_pred             HHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEE
Confidence            5688999999999999999999999999999999999999999999999999999999998764222 2 3467899999


Q ss_pred             EcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEE
Q 004918          314 IGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE  393 (724)
Q Consensus       314 IG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIe  393 (724)
                      ||+|.||++||..++++|++|++||++++.++++...+++.+++++++|.+++.+.....++++.+++++++++||+||+
T Consensus       320 IGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIe  399 (715)
T 1wdk_A          320 LGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVE  399 (715)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEE
T ss_pred             ECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEE
Confidence            99999999999999999999999999999999998889999999999999999888888888998888888999999999


Q ss_pred             cccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHH
Q 004918          394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLM  473 (724)
Q Consensus       394 av~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~  473 (724)
                      ||||+.++|+++++++.+++++++||+||||++++++++..+.++++|+|+|||+|++.++++|+++++.|++++++.+.
T Consensus       400 aV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~  479 (715)
T 1wdk_A          400 AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTV  479 (715)
T ss_dssp             CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHh
Q 004918          474 TVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKA  553 (724)
Q Consensus       474 ~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~  553 (724)
                      ++++.+||+|+++++.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++.
T Consensus       480 ~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~  559 (715)
T 1wdk_A          480 AYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEG  559 (715)
T ss_dssp             HHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999988


Q ss_pred             CCCCCCCc--HHHHHHHHcCCCCcccCccceecc-C--CC-CCCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHH
Q 004918          554 FPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYE-K--GS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMI  627 (724)
Q Consensus       554 ~~~~~~~~--~~l~~~v~~g~~G~k~g~Gfy~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~  627 (724)
                      +++++.|+  +++++||++|++|+|||+|||+|+ +  ++ .+.+|+++..++...+.     +   ...+++++|++|+
T Consensus       560 ~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i~~r~  631 (715)
T 1wdk_A          560 FPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-----E---QRDVTDEDIINWM  631 (715)
T ss_dssp             CHHHHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-----C---CCCCCHHHHHHHH
T ss_pred             cCCccCCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-----C---ccCCCHHHHHHHH
Confidence            87765577  899999999999999999999996 3  22 23467766666543211     1   1236789999999


Q ss_pred             HHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHcC
Q 004918          628 LFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG  707 (724)
Q Consensus       628 ~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~k~g  707 (724)
                      +++++||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+ +.+|++|.|+++|++|+++|
T Consensus       632 l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~l~~~~~~g  710 (715)
T 1wdk_A          632 MIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKLREMAKNG  710 (715)
T ss_dssp             HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999 88999999999999999999


Q ss_pred             CCCCC
Q 004918          708 IPLSA  712 (724)
Q Consensus       708 ~gfy~  712 (724)
                      ++||.
T Consensus       711 ~~f~~  715 (715)
T 1wdk_A          711 QSFFG  715 (715)
T ss_dssp             CCSCC
T ss_pred             CCCCC
Confidence            99984

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=3.6e-79  Score=670.42  Aligned_cols=395  Identities=28%  Similarity=0.493  Sum_probs=355.6

Q ss_pred             CCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       304 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      .+++|+||+|||+|+||++||..++++|++|++||++++   ++...+++.+++++++|.++.++.+..+++++++++++
T Consensus        50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~  126 (460)
T 3k6j_A           50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH  126 (460)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH
Confidence            456789999999999999999999999999999999998   45667888888999999999999999999999999999


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  463 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~  463 (724)
                      ++++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|++|+|+|||+|++.++++||++++.
T Consensus       127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~  206 (460)
T 3k6j_A          127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSH  206 (460)
T ss_dssp             GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSS
T ss_pred             HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHH-HcCCCHHHHHHHHHhcCCCccHHHHHHhhchHH
Q 004918          464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV  542 (724)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~-~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~  542 (724)
                      |++++++.+.++++.+||+||+++|.|||++||++.++++||+.++ ++|+++++||+++.++|+|||||+++|++|||+
T Consensus       207 Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~~~G~pmGPf~l~D~vGlD~  286 (460)
T 3k6j_A          207 TSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDV  286 (460)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTBSSCHHHHHHHHCTHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCHHHHHHHhchHH
Confidence            9999999999999999999999999999999999999999999999 779999999999988999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccceeccCCCC-CCCCCCchhHHHHHhhhccCCCCCCCcccCHH
Q 004918          543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVLPIIEECRRLSNIMPGGKPISVTEK  621 (724)
Q Consensus       543 ~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (724)
                      .+++.+.+    ..  .+++++++||++|++|+|||+|||+|+++++ +.+++++..++...+....+.    ...++++
T Consensus       287 ~~~i~~~~----~~--~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  356 (460)
T 3k6j_A          287 MEKLKKEN----GL--EPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSN----IQIINDQ  356 (460)
T ss_dssp             HHHHHHHS----CC--CCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHHHHHHHC---CCCS----SCCCSHH
T ss_pred             HHHHHHHh----cc--CchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHHHHHHHHHHhcCCC----cccCChH
Confidence            99998766    11  2568999999999999999999999987543 456666666654332211111    2347889


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCC--CCCCHH
Q 004918          622 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRF  699 (724)
Q Consensus       622 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~p~~~  699 (724)
                      +|++|++++++||+++||+|||+++++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.+|++  |+|+++
T Consensus       357 ~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~~~  436 (460)
T 3k6j_A          357 DVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVADA  436 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999999998999999999999999999999999999999999999999999999987  999999


Q ss_pred             HHHHHHcCCCCC
Q 004918          700 LEERATKGIPLS  711 (724)
Q Consensus       700 l~~~~k~g~gfy  711 (724)
                      |++|+++|+-|-
T Consensus       437 L~~~a~~g~~~~  448 (460)
T 3k6j_A          437 LKTANVSTGSSG  448 (460)
T ss_dssp             HHHHC-------
T ss_pred             HHHHHHcCCCcc
Confidence            999998887664

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=1e-74  Score=646.08  Aligned_cols=433  Identities=33%  Similarity=0.536  Sum_probs=372.7

Q ss_pred             CCHHHHHHHHHHHHhhhhcCCCCC--CC-CCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          275 MLDTSRGLVHVFFAQRATSKVPNV--TD-IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       275 ~s~~~~~~~~af~~~r~~~~~~~~--~~-~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      .|++++++++.|+.+|..+|.+..  +. .+..+++++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            489999999999999999885431  11 123456789999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          352 EANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      ++.+...++.|.++..+.+...  ...+++++++++||+||+||||+.++|+++++++.+++++++||+||||+++++++
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKPK--LRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC--EEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH--hhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            8777777666544322111111  22366778899999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHc
Q 004918          432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL  511 (724)
Q Consensus       432 ~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~  511 (724)
                      +..+.++++++|+|||+|++.++++|+++++.|++++++.+.++++.+|++++++++.|||++||++.++++|++.++++
T Consensus       159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~  238 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE  238 (463)
T ss_dssp             HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHH---HhCC-------CCC-CCcHHHHHHHHcCCCCcccCcc
Q 004918          512 GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFD---KAFP-------DRS-FQSPLVDLLLKSGRNGKANGKG  580 (724)
Q Consensus       512 Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~---~~~~-------~~~-~~~~~l~~~v~~g~~G~k~g~G  580 (724)
                      |+++++||.+++++|+|||||+++|.+|||+.+++++.+.   +.++       +.. ..++++++||++|++|+|||+|
T Consensus       239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G  318 (463)
T 1zcj_A          239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG  318 (463)
T ss_dssp             TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred             CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence            9999999999999999999999999999999999998872   2211       111 1368999999999999999999


Q ss_pred             ceeccCCCC--CCCCCCchhHHHHHhhhccCCCCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHcc
Q 004918          581 LYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGM  658 (724)
Q Consensus       581 fy~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~  658 (724)
                      ||+|+++++  ...++++..++........+.+    ..+++++|+||++.+++|||++|++|||+++++|||.+|++|+
T Consensus       319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~  394 (463)
T 1zcj_A          319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGY  394 (463)
T ss_dssp             SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC----CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHS
T ss_pred             eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence            999964222  2346666555554432222222    2367899999999999999999999999988999999999999


Q ss_pred             CCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC--CCCCCHHHHHHHHcCCCCC-CC
Q 004918          659 SFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIPLS-AP  713 (724)
Q Consensus       659 g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~k~g~gfy-~~  713 (724)
                      |||+|+||||+|+|.+|++++++.++.|++.+|+  +|+|+++|++|+++|++|. .|
T Consensus       395 G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~~~~~~~  452 (463)
T 1zcj_A          395 GWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEW  452 (463)
T ss_dssp             CCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGH
T ss_pred             CCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCCCcccch
Confidence            9999999999999999999999999999999998  8999999999999999996 45

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=3e-74  Score=641.80  Aligned_cols=404  Identities=32%  Similarity=0.497  Sum_probs=357.3

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ++++||+|||+|+||++||..++++|++|++||+++++++++.+.+++.+++++++|.++.++.+..+++++.+++++++
T Consensus         3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      ++||+||+||||+.++|+++++++.+.+++++||+||||++++++++..+.++++++|+|||+|++.++++|+++++.|+
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts  162 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATA  162 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004918          466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  543 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~  543 (724)
                      +++++.+.++++.+||+++++++.|||++||++.++++|++.++++|. ++++||+++ .++|||||||+++|++|+|+.
T Consensus       163 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~  242 (483)
T 3mog_A          163 AEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVN  242 (483)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999986 899999999 689999999999999999999


Q ss_pred             HHHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccceeccCCCCCCC-----CCCchhHHH---------------
Q 004918          544 AATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-----DPSVLPIIE---------------  601 (724)
Q Consensus       544 ~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~-----~~~~~~~~~---------------  601 (724)
                      +++++.+++.+ ++++| |++++++|+++|++|+|||+|||+|++++....     ++....++.               
T Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  322 (483)
T 3mog_A          243 FAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLL  322 (483)
T ss_dssp             HHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEE
T ss_pred             HHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhh
Confidence            99999998886 44444 778999999999999999999999976322111     111000000               


Q ss_pred             -----------HHhh-----hccC--------C------------------CCCC-Cc--ccCHHHHHHHHHHHHHHHHH
Q 004918          602 -----------ECRR-----LSNI--------M------------------PGGK-PI--SVTEKEIVEMILFPVVNESC  636 (724)
Q Consensus       602 -----------~~~~-----~~~~--------~------------------~~~~-~~--~~~~~~i~~r~~~~~~~ea~  636 (724)
                                 ....     ..++        .                  ..++ +.  .-++++|+||++++++|||+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~~nEA~  402 (483)
T 3mog_A          323 IETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEAL  402 (483)
T ss_dssp             EECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHHHHHHH
Confidence                       0000     0000        0                  0001 01  12578999999999999999


Q ss_pred             HHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCCHHHHHHHHcCCCCCCC
Q 004918          637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKGIPLSAP  713 (724)
Q Consensus       637 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~~~~k~g~gfy~~  713 (724)
                      +|+++||+ |++|||.+|++|+|||+   |||+|+|.+|+|+++++++.|++.+|+ +|+|+++|++|++.|+.||+-
T Consensus       403 ~~l~eGva-s~~diD~a~~~G~G~P~---GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~  476 (483)
T 3mog_A          403 DALQKGVA-SEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESE  476 (483)
T ss_dssp             HHHHTTSS-CHHHHHHHHHHHSCCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC---
T ss_pred             HHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCC
Confidence            99999998 99999999999999999   999999999999999999999999985 999999999999999999975

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-53  Score=437.28  Aligned_cols=250  Identities=29%  Similarity=0.379  Sum_probs=228.6

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccch
Q 004918            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      |.+|+ +|+|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....  .......
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~~~   78 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKP--DYEAHLR   78 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCC--CHHHHTH
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccch--hhHHHHH
Confidence            66788 889999999999 5899999999999999999999999999999999999999999999865322  1222334


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l  164 (724)
                      ..+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|||++|..+|++|++
T Consensus        79 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lll  157 (254)
T 3hrx_A           79 RYNRVV-EALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLL  157 (254)
T ss_dssp             HHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhh
Confidence            455566 6799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  244 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  244 (724)
                      ||++|+|+||+++||||+|||++++++++.++++++++.++.+++                                   
T Consensus       158 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------------  202 (254)
T 3hrx_A          158 LSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYA-----------------------------------  202 (254)
T ss_dssp             HCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------------
T ss_pred             cCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHH-----------------------------------
Confidence            999999999999999999999999999999999999998875433                                   


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                       .+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|+.+
T Consensus       203 -~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  252 (254)
T 3hrx_A          203 -LTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ  252 (254)
T ss_dssp             -HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence             45778889999999999999999999999999999999999999998753

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5.2e-53  Score=438.29  Aligned_cols=254  Identities=25%  Similarity=0.326  Sum_probs=223.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---c
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---~   79 (724)
                      +.|.+++ ++||++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........   .
T Consensus        15 e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   93 (274)
T 4fzw_C           15 EFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLG   93 (274)
T ss_dssp             -CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHH
T ss_pred             ccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHH
Confidence            5688999 8999999999996 799999999999999999999999999999999999999999998764322211   1


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+.+..+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        94 ~~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  172 (274)
T 4fzw_C           94 MSVERFYNPLV-RRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA  172 (274)
T ss_dssp             HHHHHTHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHH-HHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHH
Confidence            12222334455 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++|+|+||+++||||+|||++++.+++.++|++++..|+.+++                              
T Consensus       173 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  222 (274)
T 4fzw_C          173 MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLG------------------------------  222 (274)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                            .+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|+.+
T Consensus       223 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~  272 (274)
T 4fzw_C          223 ------LIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT  272 (274)
T ss_dssp             ------HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred             ------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence                  46788888899999999999999999999999999999999999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=3.9e-53  Score=444.20  Aligned_cols=240  Identities=23%  Similarity=0.364  Sum_probs=226.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHhhcCcccccCc-cC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE  384 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~  384 (724)
                      .++||+|||+|+||++||..++.+|++|+++|++++.++++.+.+++.+..++++|.++.. ..+..+++++.++++ ++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4789999999999999999999999999999999999999999999999999999988744 556678899999998 57


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (724)
                      +++||+|||||||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||||++.+|+||||+++.|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004918          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  538 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~---~Gp~~~~D~~  538 (724)
                      ++++++++..|++.+||+||++ +|+||||+||++.++++||++++++|+ +++|||.++ .++|+|   ||||+++|++
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999866 899999999999999999999999997 999999999 788886   8999999999


Q ss_pred             chHHHHHH
Q 004918          539 GYGVAAAT  546 (724)
Q Consensus       539 Gld~~~~~  546 (724)
                      |+|+...+
T Consensus       245 G~~~~~~~  252 (319)
T 3ado_A          245 AEGMLSYC  252 (319)
T ss_dssp             TTSHHHHH
T ss_pred             CccHHHHH
Confidence            99876544

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=8.3e-53  Score=433.27  Aligned_cols=250  Identities=30%  Similarity=0.453  Sum_probs=228.1

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccc
Q 004918            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      .|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......   ...
T Consensus         6 ~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~---~~~   81 (258)
T 4fzw_A            6 ELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAA---TLN   81 (258)
T ss_dssp             EEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHH---HHT
T ss_pred             cEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhh---HHH
Confidence            588999 8999999999996 79999999999999999999999999999999999999999999886432111   112


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~  163 (724)
                      .....++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ll  160 (258)
T 4fzw_A           82 DTRPQLW-ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMV  160 (258)
T ss_dssp             CSHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHH-HHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHH
Confidence            2234555 679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (724)
                      +||++++|+||+++||||+|||++++++++.++++++++.++.+++                                  
T Consensus       161 ltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------------  206 (258)
T 4fzw_A          161 LSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQ----------------------------------  206 (258)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred             HcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999875443                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                        .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+.+
T Consensus       207 --~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  256 (258)
T 4fzw_A          207 --AAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK  256 (258)
T ss_dssp             --HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence              45778888889999999999999999999999999999999999998753

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1e-52  Score=437.92  Aligned_cols=257  Identities=32%  Similarity=0.440  Sum_probs=239.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      -+||+|||+|+||++||.+++ +|++|++||++++.++++.+.+                 .+..+++++.+++++++++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l-----------------~~~~~~~i~~~~~~~~~~~   73 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI-----------------PEELLSKIEFTTTLEKVKD   73 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS-----------------CGGGGGGEEEESSCTTGGG
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH-----------------HHHHhCCeEEeCCHHHHcC
Confidence            479999999999999999999 9999999999999988875430                 2334567877888877999


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHH
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ  467 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e  467 (724)
                      ||+|||||||+.++|+.+|+++++.  +++|++||||++++++++..+.++.+++|+|||+|++.++++|+++++.|+++
T Consensus        74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~  151 (293)
T 1zej_A           74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK  151 (293)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence            9999999999999999999999887  89999999999999999998889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCc---cHHHHHHhhchHHH
Q 004918          468 VILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVA  543 (724)
Q Consensus       468 ~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~g~~~---Gp~~~~D~~Gld~~  543 (724)
                      ++++++++++.+|++|+++++.  |++||++.++++||+.++++|+++++||.++ .++|+|+   |||+++|++|+|++
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~  229 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA  229 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence            9999999999999999999986  9999999999999999999999999999999 7999999   99999999999999


Q ss_pred             HHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceeccC
Q 004918          544 AATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEK  586 (724)
Q Consensus       544 ~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~  586 (724)
                      +++++.+++.++++.| |++++++||++|++|+|||+|||+|++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            9999999999887444 889999999999999999999999964

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=2.8e-52  Score=437.38  Aligned_cols=275  Identities=28%  Similarity=0.410  Sum_probs=255.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcC-CCCHHHHHHhhcCcccccCcc-C
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDYS-E  384 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~-~  384 (724)
                      .++||+|||+|.||++||..++++|++|++||++++.++++.+.+.+.+..+++.+ .++..+.+....++..+++++ +
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            47899999999999999999999999999999999999999999999998888888 788777777778888888884 6


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  464 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t  464 (724)
                      +++||+||+|||++.+.++.+++++.+.+++++||+||||++++++++..+.++.+++|+|||+|++.++++|++++..|
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t  162 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT  162 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004918          465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  541 (724)
Q Consensus       465 ~~e~~~~~~~l~~~lGk~~v~v-~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld  541 (724)
                      ++++++.++++++.+|+.++++ ++.|||++||++.++++||++++++|+ ++++||+++ .++|+|||||+++|++|||
T Consensus       163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld  242 (283)
T 4e12_A          163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT  242 (283)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence            9999999999999999999999 799999999999999999999999985 999999999 7999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccceec
Q 004918          542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  584 (724)
Q Consensus       542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y  584 (724)
                      +++++.++   ..+++.+ |++++++||++|++|+|||+|||+|
T Consensus       243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            99999883   2222223 6789999999999999999999998

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.1e-51  Score=426.09  Aligned_cols=254  Identities=38%  Similarity=0.624  Sum_probs=229.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +++|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATEL   83 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHH
T ss_pred             ccceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHH
Confidence            46799999 89999999999966999999999999999999999999999999999999999999998653221111222


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      ....+.++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l  162 (261)
T 3pea_A           84 AQLGQVTF-ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM  162 (261)
T ss_dssp             HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            23334455 67999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      ++||++++|+||+++||||+|||++++.+++.++|+++++.++.+++                                 
T Consensus       163 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  209 (261)
T 3pea_A          163 MLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATAR---------------------------------  209 (261)
T ss_dssp             HHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred             HHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|..
T Consensus       210 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f  258 (261)
T 3pea_A          210 ---AVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSF  258 (261)
T ss_dssp             ---HHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCC
T ss_pred             ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               5677888888888999999999999999999999999999999998875

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.3e-51  Score=426.40  Aligned_cols=256  Identities=27%  Similarity=0.466  Sum_probs=231.0

Q ss_pred             CCCCcEEEE-EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTME-VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~-~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |++++|.++ . +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus         5 m~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~   82 (265)
T 3kqf_A            5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMN-EE   82 (265)
T ss_dssp             --CCSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCC-HH
T ss_pred             ccCCeEEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccC-HH
Confidence            678899999 7 8999999999996 6999999999999999999999999999999999 8999999999986531 11


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ....+....+.++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  161 (265)
T 3kqf_A           83 QVRHAVSMIRTTM-EMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  161 (265)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            1222333444556 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|+++++.++.+++                            
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  213 (265)
T 3kqf_A          162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVR----------------------------  213 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                              .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       214 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3kqf_A          214 --------LAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK  263 (265)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                    56788888888999999999999999999999999999999999988753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=9.2e-51  Score=430.30  Aligned_cols=283  Identities=33%  Similarity=0.527  Sum_probs=261.1

Q ss_pred             CCCCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHH-----HHHHhhcCcc
Q 004918          303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-----KANNALKMLK  377 (724)
Q Consensus       303 ~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-----~~~~~~~~i~  377 (724)
                      .|..+|+||+|||+|.||.+||..|+++|++|++||+++++++++.+.+++.++..++.|.++..     +......++.
T Consensus        10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~   89 (302)
T 1f0y_A           10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA   89 (302)
T ss_dssp             --CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence            34556889999999999999999999999999999999999999888888888888888887654     4445566788


Q ss_pred             cccCcc-CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCee
Q 004918          378 GVLDYS-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL  456 (724)
Q Consensus       378 ~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv  456 (724)
                      .+++++ ++++||+||+|||++.++++++++++.+.+++++||+||+|++++++++..+.++++++++||++|++.++++
T Consensus        90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~  169 (302)
T 1f0y_A           90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLV  169 (302)
T ss_dssp             EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred             EecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceE
Confidence            888885 7899999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQL  534 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~g~~~Gp~~~  534 (724)
                      |+++++.+++++++.+.++++.+|+.++++++.|||++||++.++++|+++++++| +++++||.++ .++|||+|||++
T Consensus       170 ~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~  249 (302)
T 1f0y_A          170 EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFEL  249 (302)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999997 5999999999 799999999999


Q ss_pred             HHhhchHHHHHHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccceecc
Q 004918          535 LDLAGYGVAAATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYE  585 (724)
Q Consensus       535 ~D~~Gld~~~~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~  585 (724)
                      +|.+|+|+++++++.+++.+ +++.| |++++++|+++|++|+|||+|||+|+
T Consensus       250 ~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          250 LDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            99999999999999999988 77544 88999999999999999999999994

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=2.1e-51  Score=424.92  Aligned_cols=257  Identities=21%  Similarity=0.310  Sum_probs=229.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-   78 (724)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........ 
T Consensus         1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (268)
T 3i47_A            1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEE   79 (268)
T ss_dssp             -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHH
T ss_pred             CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHH
Confidence            8999999999 8999999999996 699999999999999999999999999999999999999999999875322111 


Q ss_pred             -ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       .........+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~  157 (268)
T 3i47_A           80 ENLEDSLVLGNLM-YSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER  157 (268)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence             111122344555 67999999999999999999999999999999999999999999999999999987 799999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.|+.+++                            
T Consensus       158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  209 (268)
T 3i47_A          158 AAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVK----------------------------  209 (268)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~-~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                              .+|++++.....++++ .++.|.+.+..++.|+|++|++++|++||+|....
T Consensus       210 --------~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  261 (268)
T 3i47_A          210 --------NSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE  261 (268)
T ss_dssp             --------HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred             --------HHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                    4577888888888887 78999999999999999999999999999998654

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1e-51  Score=428.07  Aligned_cols=255  Identities=24%  Similarity=0.383  Sum_probs=228.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.++++++  |+++|+|||||.|++||+|+|++++..... ...
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~   88 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDA-TEG   88 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCH-HHH
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccCh-hhH
Confidence            6678899999 7999999999995 8999999999999999999  679999999999999999999999864211 111


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .......++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        89 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  167 (275)
T 3hin_A           89 LVHSQTWHRVF-DKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM  167 (275)
T ss_dssp             HHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence            12223344556 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++|+|+||+++||||+|||++++.+++.++|++|++.++.+++                              
T Consensus       168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~------------------------------  217 (275)
T 3hin_A          168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNF------------------------------  217 (275)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                            .+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|+...
T Consensus       218 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  268 (275)
T 3hin_A          218 ------AVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE  268 (275)
T ss_dssp             ------HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC--
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                  457788888888999999999999999999999999999999999998754

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.3e-51  Score=423.69  Aligned_cols=254  Identities=32%  Similarity=0.450  Sum_probs=230.4

Q ss_pred             CCCCcEEEEEecCc-EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MAAPRVTMEVGNDG-VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~-v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+++.|.++. +++ |++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   83 (263)
T 3moy_A            6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQ-   83 (263)
T ss_dssp             CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHH-
T ss_pred             CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchh-
Confidence            6788899999 566 9999999996 69999999999999999999999999999999999999999999986532111 


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                        ........++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        84 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (263)
T 3moy_A           84 --ARERNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK  160 (263)
T ss_dssp             --HHHTTTTHHH-HHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence              1122233455 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|++||++++|+||+++||||+|||++++.+++.++|++++..++.+++                             
T Consensus       161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  211 (263)
T 3moy_A          161 AMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGR-----------------------------  211 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                             .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       212 -------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  261 (263)
T 3moy_A          212 -------AVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT  261 (263)
T ss_dssp             -------HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence                   56788888888999999999999999999999999999999999988753

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=3.5e-51  Score=424.73  Aligned_cols=254  Identities=30%  Similarity=0.490  Sum_probs=228.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......  
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--   98 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFAD--   98 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHH--
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhh--
Confidence            7788899999 7899999999996 69999999999999999999999999999999999999999999986532111  


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ....... ..+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus        99 ~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A  176 (278)
T 3h81_A           99 AFTADFF-ATW-GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA  176 (278)
T ss_dssp             HHHHTTT-GGG-HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHH-HHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence            0011111 124 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.++.+++                              
T Consensus       177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------  226 (278)
T 3h81_A          177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAAR------------------------------  226 (278)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                            .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       227 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  276 (278)
T 3h81_A          227 ------MAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT  276 (278)
T ss_dssp             ------HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                  56788888888999999999999999999999999999999999988753

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=1.9e-50  Score=417.62  Aligned_cols=253  Identities=22%  Similarity=0.345  Sum_probs=218.0

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhh---hccC
Q 004918            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ---KVHG   75 (724)
Q Consensus         1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~---~~~~   75 (724)
                      || ++.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.   ....
T Consensus         1 Ms~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T 3fdu_A            1 MSLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN   79 (266)
T ss_dssp             -CCCTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCC
T ss_pred             CCCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccc
Confidence            65 56899999 8999999999995 89999999999999999999999999999999999999999999987   3222


Q ss_pred             CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      ..  .........++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        80 ~~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  156 (266)
T 3fdu_A           80 AG--PAGQVPPFVLL-KSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG  156 (266)
T ss_dssp             CS--CGGGSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred             hh--hHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhC
Confidence            11  12233445666 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|++|++||++++|+||+++||||+|||  ++.+++.++|++|++.|+.+++                          
T Consensus       157 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~--------------------------  208 (266)
T 3fdu_A          157 YHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLK--------------------------  208 (266)
T ss_dssp             HHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999998  8999999999999999876543                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                                .+|++++... .+++++++.|.+.+..++.|+|++|++++|++||+|...+
T Consensus       209 ----------~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~  258 (266)
T 3fdu_A          209 ----------QTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ  258 (266)
T ss_dssp             ----------HHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred             ----------HHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                      3455665554 4688999999999999999999999999999999998765

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=8e-51  Score=420.72  Aligned_cols=256  Identities=24%  Similarity=0.333  Sum_probs=227.0

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+ ++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+.||+|+|++++........
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   83 (265)
T 3swx_A            5 MSDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA   83 (265)
T ss_dssp             --CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--C
T ss_pred             CCCCceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchh
Confidence            55 57899999 7999999999995 799999999999999999999999999999999999999999999875432211


Q ss_pred             ccccchhHHHHHHHHH-hcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           79 VSLMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l-~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       ..+.....+.+ ..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        84 -~~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  161 (265)
T 3swx_A           84 -SLTPEGGINPW-QVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG  161 (265)
T ss_dssp             -CCCCTTCCCTT-CCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred             -HHHHHHHHHHH-HHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence             11112222334 457 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|+|++++.+++.++|+++++.++.+++                            
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  213 (265)
T 3swx_A          162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQ----------------------------  213 (265)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       214 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3swx_A          214 --------ATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV  263 (265)
T ss_dssp             --------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                    45677888777889999999999999999999999999999999988753

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=6.1e-51  Score=420.88  Aligned_cols=256  Identities=21%  Similarity=0.305  Sum_probs=223.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCc-cCCCCchhhhh--c-cC
Q 004918            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQK--V-HG   75 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F-~aG~Dl~~~~~--~-~~   75 (724)
                      ||++.|.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|+.| |+|+|++++..  . ..
T Consensus         1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred             CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCC
Confidence            8999999999 899999999999 58999999999999999999999999999999999999 99999999875  2 11


Q ss_pred             CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      ......+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG  158 (263)
T 3lke_A           80 DVRLREVLHVLNHCV-LEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG  158 (263)
T ss_dssp             SHHHHHHHHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence            111222333445566 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecC-cchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (724)
                      ..+|++|++||++++|+||+++||||+||| ++++.+++.++|+++++.|+.+++                         
T Consensus       159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  213 (263)
T 3lke_A          159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIA-------------------------  213 (263)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            999999999999999999999999999999 999999999999999999875443                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                 .+|++++.....+++++++.|.+.+..++.|+|++|++++|++++++.+
T Consensus       214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~  262 (263)
T 3lke_A          214 -----------ATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH  262 (263)
T ss_dssp             -----------HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred             -----------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence                       4567788777778999999999999999999999999999999998764

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.5e-50  Score=420.45  Aligned_cols=256  Identities=21%  Similarity=0.306  Sum_probs=228.2

Q ss_pred             CCCCcEEEEEec--CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTMEVGN--DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~~~~--~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |+++ |.++. +  ++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus        22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~   99 (286)
T 3myb_A           22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSRE   99 (286)
T ss_dssp             --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHH
T ss_pred             Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHH
Confidence            6665 88888 6  899999999996 69999999999999999999999999999999999999999999987521111


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|..
T Consensus       100 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~  177 (286)
T 3myb_A          100 YYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK  177 (286)
T ss_dssp             HHHHHHHHHHHHH-HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH
Confidence            1122333345556 67999999999999999999999999999999999999999999999999 788899999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|+++++.++.+++                            
T Consensus       178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  229 (286)
T 3myb_A          178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA----------------------------  229 (286)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+...
T Consensus       230 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g  280 (286)
T 3myb_A          230 --------MGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHT  280 (286)
T ss_dssp             --------HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCC
Confidence                    457788888888999999999999999999999999999999999988654

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=3.2e-50  Score=413.60  Aligned_cols=246  Identities=23%  Similarity=0.323  Sum_probs=224.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...       .+
T Consensus         6 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-------~~   77 (255)
T 3p5m_A            6 NGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA-------GA   77 (255)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH-------HH
T ss_pred             ceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch-------HH
Confidence            4688998 8899999999996 6999999999999999999999999999999999999999999987621       22


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      ....+.++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l  156 (255)
T 3p5m_A           78 ADAANRVV-RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRM  156 (255)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            33444566 67999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      ++||++++|+||+++||||+|+|++++.+++.+++++++..|+.+++                                 
T Consensus       157 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  203 (255)
T 3p5m_A          157 AMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFG---------------------------------  203 (255)
T ss_dssp             HHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred             HHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875443                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+.
T Consensus       204 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  252 (255)
T 3p5m_A          204 ---WTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNF  252 (255)
T ss_dssp             ---HHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               4677888888889999999999999999999999999999999998775

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=4.7e-50  Score=418.11  Aligned_cols=255  Identities=25%  Similarity=0.361  Sum_probs=230.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc--
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~--   79 (724)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++.........  
T Consensus        16 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   94 (279)
T 3g64_A           16 WRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR   94 (279)
T ss_dssp             CSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhH
Confidence            45799999 7899999999996 7999999999999999999999999999999999999999999998764332211  


Q ss_pred             -cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCcc-CCcchhhhhcccccHH
Q 004918           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI-PGFGGTQRLPRLVGLS  157 (724)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~-P~~g~~~~l~r~~G~~  157 (724)
                       ..+....+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|++|..
T Consensus        95 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           95 LLDFNRMTGQVV-RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence             11222334555 67999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++                            
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  225 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHA----------------------------  225 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                              .+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|+..
T Consensus       226 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  275 (279)
T 3g64_A          226 --------QTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQ  275 (279)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                    45778888888899999999999999999999999999999999988764

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=2.4e-50  Score=418.38  Aligned_cols=257  Identities=24%  Similarity=0.321  Sum_probs=228.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC---C
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A   76 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~---~   76 (724)
                      |+ +.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T 1nzy_A            1 MY-EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CC-SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccCh
Confidence            65 5688988 7899999999995 899999999999999999999999999999999999999999998754210   0


Q ss_pred             Ccc-cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           77 GDV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      .+. ..+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (269)
T 1nzy_A           79 RDHFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG  157 (269)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhh
Confidence            000 11222244555 6689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|++|++||++++|+||+++||||+|+|++++.+++.++++++++.++.+++                          
T Consensus       158 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------  211 (269)
T 1nzy_A          158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV--------------------------  211 (269)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999998875432                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                                .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+...
T Consensus       212 ----------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~  262 (269)
T 1nzy_A          212 ----------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             ----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             ----------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence                      456778888888999999999999999999999999999999999988654

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=4.5e-50  Score=419.67  Aligned_cols=254  Identities=24%  Similarity=0.349  Sum_probs=222.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc----
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD----   78 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~----   78 (724)
                      ..|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........    
T Consensus        24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            4577888 8999999999996 899999999999999999999999999999999999999999999865432211    


Q ss_pred             --ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCC-cchhhhhccccc
Q 004918           79 --VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVG  155 (724)
Q Consensus        79 --~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~-~g~~~~l~r~~G  155 (724)
                        ...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+|++|
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG  181 (290)
T 3sll_A          103 TIALRSMELLDEVI-LTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG  181 (290)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence              111223344555 6799999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.|+.+++                          
T Consensus       182 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------  235 (290)
T 3sll_A          182 TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIE--------------------------  235 (290)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999875443                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhhhcCC
Q 004918          236 KTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELV-MLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~-~s~~~~~~~~af~~~r~~~~~  295 (724)
                                .+|++++.... .+++++++.|...+..++ .|+|++|++++|++||+|+..
T Consensus       236 ----------~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~  287 (290)
T 3sll_A          236 ----------LTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFR  287 (290)
T ss_dssp             ----------HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCC
T ss_pred             ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                      45778888888 899999999999999999 999999999999999988754

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1e-50  Score=418.03  Aligned_cols=251  Identities=24%  Similarity=0.297  Sum_probs=189.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      +..|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (256)
T 3qmj_A            5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE   83 (256)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred             cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence            35688998 8999999999996 699999999999999999999999999999999999999999999875432222223


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      .....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus        84 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  162 (256)
T 3qmj_A           84 GKFGFRGLI-KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW  162 (256)
T ss_dssp             CSSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            344455666 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |++||++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++                                
T Consensus       163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  210 (256)
T 3qmj_A          163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM--------------------------------  210 (256)
T ss_dssp             HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875433                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                          .+|++++.....+++++++.|...+..++.|+|++|++++|++||+
T Consensus       211 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          211 ----AVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             ----HHHHHHHCC-------------------------------------
T ss_pred             ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence                4577888888888999999999999999999999999999999985

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=8.6e-50  Score=413.01  Aligned_cols=253  Identities=26%  Similarity=0.376  Sum_probs=220.4

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+ ++.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++ ...  . ..
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~-~~   79 (265)
T 3rsi_A            5 MSAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--M-VR   79 (265)
T ss_dssp             ----CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-------------
T ss_pred             CCCCCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--c-cc
Confidence            54 56799999 7899999999995 79999999999999999999999999999999999999999998 221  1 11


Q ss_pred             ccccchhHHH-HHHHHH-h--cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccc
Q 004918           79 VSLMPDVSVE-LVVNLI-E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (724)
Q Consensus        79 ~~~~~~~~~~-~~~~~l-~--~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~  154 (724)
                      ...+...... ++ ..+ .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 3rsi_A           80 DGSAPPLDPATIG-KGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI  158 (265)
T ss_dssp             -----CCCHHHHH-HHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS
T ss_pred             hHHHHHHhHHHHH-HHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh
Confidence            1122222334 55 668 8  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004918          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (724)
Q Consensus       155 G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (724)
                      |..+|++|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                         
T Consensus       159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  213 (265)
T 3rsi_A          159 PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVR-------------------------  213 (265)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999999875443                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                                 .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3rsi_A          214 -----------NAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT  263 (265)
T ss_dssp             -----------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred             -----------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                       45778888888899999999999999999999999999999999988753

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=9.7e-50  Score=412.88  Aligned_cols=252  Identities=25%  Similarity=0.387  Sum_probs=227.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++.+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+||||| .|++||+|+|++++.. . ..+...
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~-~~~~~~   84 (265)
T 2ppy_A            8 KQYLTVFK-EDGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-A-DPRFKT   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-S-CHHHHH
T ss_pred             CCeEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-c-chhHHH
Confidence            45788888 789999999999779999999999999999999999999999999 9999999999998864 1 111111


Q ss_pred             cchhH-HHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCc-eeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           82 MPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        82 ~~~~~-~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a-~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      +.... ++++ .+|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|..+|
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  163 (265)
T 2ppy_A           85 QFCLFCNETL-DKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA  163 (265)
T ss_dssp             HHHHHHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence            22233 4556 67999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|+|++++.+++.++++++++.++.+++                              
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  213 (265)
T 2ppy_A          164 LDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVS------------------------------  213 (265)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875432                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                            .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|..
T Consensus       214 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  262 (265)
T 2ppy_A          214 ------NIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW  262 (265)
T ss_dssp             ------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                  4577888888889999999999999999999999999999999988775

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1.4e-50  Score=418.59  Aligned_cols=253  Identities=23%  Similarity=0.325  Sum_probs=226.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......... 
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~-   83 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNP-   83 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSS-
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHH-
Confidence            46788998 7899999999996 69999999999999999999999999999999999999999999987643222111 


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      .... +.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~~~~-~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  161 (265)
T 3qxz_A           84 DFSA-SPVQ-PAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE  161 (265)
T ss_dssp             CCCS-CCSS-SCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred             HHHH-HHHH-HHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            1112 3444 5689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      |++||++++|+||+++||||+|||++++.+++.++|+++++. |+.+++                               
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~-------------------------------  210 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAA-------------------------------  210 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHH-------------------------------
Confidence            999999999999999999999999999999999999999998 875443                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSG--VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~--l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                           .+|++++.....+++++  ++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       211 -----~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~  262 (265)
T 3qxz_A          211 -----LTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWA  262 (265)
T ss_dssp             -----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCC
T ss_pred             -----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCC
Confidence                 45677777777788888  999999999999999999999999999998764

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=7.2e-50  Score=411.95  Aligned_cols=250  Identities=26%  Similarity=0.379  Sum_probs=221.3

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +.+.++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   .+
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~   78 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHG---DV   78 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHH---HH
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchh---HH
Confidence            5788998 789999999999 589999999999999999999999999999999999999999999876422111   11


Q ss_pred             ch-hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           83 PD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        83 ~~-~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      .. ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        79 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           79 LRSRYAPMM-KALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HHHTHHHHH-HHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11 234555 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |++||++++|+||+++||||+|+|++++.+++.+++++++..++.+++                                
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  205 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIG--------------------------------  205 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875432                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                          .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       206 ----~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  254 (257)
T 2ej5_A          206 ----LIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLF  254 (257)
T ss_dssp             ----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCC
T ss_pred             ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence                4567788888889999999999999999999999999999999988765

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=4.1e-50  Score=418.68  Aligned_cols=248  Identities=25%  Similarity=0.334  Sum_probs=220.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccC----CC
Q 004918            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG----AG   77 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~----~~   77 (724)
                      ++.|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.....    ..
T Consensus         8 ~~~i~~~~-~~~va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~   86 (287)
T 3gkb_A            8 YSTLRVSS-EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAA   86 (287)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence            67899999 79999999999999999999999999999999999999999999998 78999999998864210    00


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeC-CceeeCcccccCccCCcchhhhhcccccH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                      ..........+++ ..|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|++|.
T Consensus        87 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  165 (287)
T 3gkb_A           87 SAPADVNVFQAVG-ELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR  165 (287)
T ss_dssp             TSCTTCCTTHHHH-HHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence            1112223344566 679999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.|+.+++                           
T Consensus       166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~---------------------------  218 (287)
T 3gkb_A          166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIE---------------------------  218 (287)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHH---------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999876543                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                               .+|++++..   ...++++.|...+..++.|+|++|++++|++||+
T Consensus       219 ---------~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~  261 (287)
T 3gkb_A          219 ---------AAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA  261 (287)
T ss_dssp             ---------HHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred             ---------HHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence                     344555542   3468899999999999999999999999999987

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.1e-49  Score=410.87  Aligned_cols=253  Identities=30%  Similarity=0.466  Sum_probs=225.3

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      |+ +..+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......  
T Consensus         1 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--   77 (258)
T 2pbp_A            1 MSEFVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI--   77 (258)
T ss_dssp             ---CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH--
T ss_pred             CCCcceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--
Confidence            55 45788888 7899999999995 7999999999999999999999999999999999999999999987642210  


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+.... +.+ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        78 ~~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  155 (258)
T 2pbp_A           78 RLEWLNQF-ADW-DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKR  155 (258)
T ss_dssp             HHHHHCTT-HHH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hHHHHHHH-HHH-HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHH
Confidence            01111112 445 5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|++||++++|+||+++||||+|+|++++.+++.+++++++..++.+++                             
T Consensus       156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  206 (258)
T 2pbp_A          156 ALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALR-----------------------------  206 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+.
T Consensus       207 -------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  255 (258)
T 2pbp_A          207 -------LIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF  255 (258)
T ss_dssp             -------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence                   4577888888889999999999999999999999999999999988764

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.3e-49  Score=426.10  Aligned_cols=291  Identities=20%  Similarity=0.272  Sum_probs=229.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCC--c
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--D   78 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~--~   78 (724)
                      +++|.+++ +++|++||||||+ +|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.......  .
T Consensus         8 ~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~   86 (353)
T 4hdt_A            8 NEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAE   86 (353)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHH
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHH
Confidence            57899999 8999999999996 7999999999999999999999999999999998 6999999999986532211  1


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        87 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~  164 (353)
T 4hdt_A           87 ARRFWFDEYRLN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KL  164 (353)
T ss_dssp             HHHHHHHHHHHH-HHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-TH
T ss_pred             HHHHHHHHHHHH-HHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HH
Confidence            222233344555 6699999999999999999999999999999999999999999999999999999999999999 69


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhh---------hh----hhccCCCCCcHHHHH
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI---------RS----LHRTDKLGSLSEARE  225 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~---------~~----~~~~~~~~~~~~~~~  225 (724)
                      |++|++||++|+|+||+++||||+|||+++|++.+.+++.+.........         ..    +.+.-...++.....
T Consensus       165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~  244 (353)
T 4hdt_A          165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIA  244 (353)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999999999999999999998876432110000         00    000000011111111


Q ss_pred             HHH-----HHHHHHHHhCCCC-hhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HhhhhcCCC
Q 004918          226 VLK-----LARLQAKKTAPNM-PQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELVMLDTSRGLVHVFF--AQRATSKVP  296 (724)
Q Consensus       226 ~~~-----~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~~s~~~~~~~~af~--~~r~~~~~~  296 (724)
                      .+.     .+....++...+- .+...+|+.++.+... +++++++.|.+.+..++.|+|++|++++|+  +||+|++++
T Consensus       245 ~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p  324 (353)
T 4hdt_A          245 ALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRP  324 (353)
T ss_dssp             HHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSS
T ss_pred             HHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCC
Confidence            111     1112223333333 4677789999988875 799999999999999999999999999999  999999875

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.1e-50  Score=425.29  Aligned_cols=256  Identities=25%  Similarity=0.333  Sum_probs=183.0

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhh---ccCCC
Q 004918            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK---VHGAG   77 (724)
Q Consensus         3 ~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~---~~~~~   77 (724)
                      ++.|.++. ++ +|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..   .....
T Consensus        28 ~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           28 QDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            46799999 77 99999999995 799999999999999999999999999999999999999999999864   11110


Q ss_pred             ----cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccc
Q 004918           78 ----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL  153 (724)
Q Consensus        78 ----~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~  153 (724)
                          ....+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus       107 ~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~  185 (298)
T 3qre_A          107 AKAKDANLADLVGERPP-HFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRL  185 (298)
T ss_dssp             --------------CCT-TGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHh
Confidence                1111111122334 56889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004918          154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARL  232 (724)
Q Consensus       154 ~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (724)
                      +|..+|++|++||++++|+||+++||||+|||++++.+++.++|++|+.. |+.+++                       
T Consensus       186 vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~-----------------------  242 (298)
T 3qre_A          186 TSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMA-----------------------  242 (298)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHH-----------------------
T ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHH-----------------------
Confidence            99999999999999999999999999999999999999999999999998 765433                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                                   .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|+..+
T Consensus       243 -------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~  293 (298)
T 3qre_A          243 -------------VIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPS  293 (298)
T ss_dssp             -------------HHHHHHHGGGGC---------------------------------------
T ss_pred             -------------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                         567888888888999999999999999999999999999999999998654

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=1.3e-49  Score=411.11  Aligned_cols=253  Identities=21%  Similarity=0.277  Sum_probs=226.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CC-CCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NG-GRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g-~g-~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |+|+.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+||||| .| ++||+|+|++++...... 
T Consensus         1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~-   77 (261)
T 1ef8_A            1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRD-   77 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred             CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCch-
Confidence            8899999999 7899999999996 89999999999999999999999 99999999 98 899999999987643211 


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      .. ......++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        78 ~~-~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  155 (261)
T 1ef8_A           78 PL-SYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             TT-CTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             hH-HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHH
Confidence            11 1222345666 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|+|++++.+++.+++++++..++.+++                            
T Consensus       156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  207 (261)
T 1ef8_A          156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875432                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHhhhhcC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFK--ELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~--~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                              .+|++++.+...+++++++.|.+.+.  .++.|+|++|++++|++||+|..
T Consensus       208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~  258 (261)
T 1ef8_A          208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF  258 (261)
T ss_dssp             --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCC
Confidence                    45677777777788999999999999  99999999999999999988765

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-49  Score=409.37  Aligned_cols=249  Identities=28%  Similarity=0.433  Sum_probs=224.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+ +.|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         5 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   82 (256)
T 3trr_A            5 MA-DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE   82 (256)
T ss_dssp             CC-CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET
T ss_pred             CC-CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh
Confidence            44 4688999 7999999999996 7999999999999999999999999999999999999999999998753221111


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..    . . + ..+ ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        83 ~~----~-~-~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           83 RG----L-G-F-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             TE----E-T-T-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hh----h-h-H-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            11    1 1 2 224 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|||++++.+++.++++++++.++.+++                              
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  204 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVA------------------------------  204 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                            .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       205 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  254 (256)
T 3trr_A          205 ------ATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ  254 (256)
T ss_dssp             ------HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                  46788888888999999999999999999999999999999999988753

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=7.6e-50  Score=415.72  Aligned_cols=253  Identities=21%  Similarity=0.292  Sum_probs=220.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC-----C-
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-----A-   76 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-----~-   76 (724)
                      +.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....     . 
T Consensus        11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (274)
T 3tlf_A           11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPY   89 (274)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CT
T ss_pred             CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence            4789999 7899999999996 799999999999999999999999999999999999999999999865332     0 


Q ss_pred             CcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                      ..........+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|.
T Consensus        90 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~  167 (274)
T 3tlf_A           90 LSTYDQWEAPQEGT-PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPR  167 (274)
T ss_dssp             TCSGGGGSCCCTTC-CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCH
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCH
Confidence            11111111222344 568899999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHcCC--CCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSK--SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  234 (724)
Q Consensus       157 ~~a~~l~ltg~--~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (724)
                      .+|++|++||+  +++|+||+++||||+|+|++++.+++.++|++|++.|+.+++                         
T Consensus       168 ~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------  222 (274)
T 3tlf_A          168 SIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVR-------------------------  222 (274)
T ss_dssp             HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred             HHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence            99999999999  999999999999999999999999999999999999875443                         


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                                 .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       223 -----------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  272 (274)
T 3tlf_A          223 -----------GTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ  272 (274)
T ss_dssp             -----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                       56778888888899999999999999999999999999999999988753

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.9e-49  Score=414.04  Aligned_cols=252  Identities=21%  Similarity=0.340  Sum_probs=224.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      ..+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++...........+
T Consensus        33 ~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~  111 (287)
T 2vx2_A           33 RPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEV  111 (287)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHH
T ss_pred             cceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHH
Confidence            4688888 7899999999996 7999999999999999999999999999999999999999999987543211111112


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      .....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|..+|++|
T Consensus       112 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~l  189 (287)
T 2vx2_A          112 FQTCSKVM-MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEM  189 (287)
T ss_dssp             HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHH
Confidence            22344555 679999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      ++||++++|+||+++||||+|||++++.+++.++|++|++.++.+++                                 
T Consensus       190 lltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------------  236 (287)
T 2vx2_A          190 LFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS---------------------------------  236 (287)
T ss_dssp             HHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred             HHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875432                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+.
T Consensus       237 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f  285 (287)
T 2vx2_A          237 ---LGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW  285 (287)
T ss_dssp             ---HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               4567788777888999999999999999999999999999999988764

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=7.9e-50  Score=411.71  Aligned_cols=247  Identities=27%  Similarity=0.330  Sum_probs=206.2

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccc
Q 004918            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      .|.++. +++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... ...  
T Consensus        12 ~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~--   87 (262)
T 3r9q_A           12 AVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE-LHP--   87 (262)
T ss_dssp             SEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC-CCT--
T ss_pred             EEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh-HHH--
Confidence            588998 7899999999995 79999999999999999999999999999999999999999999986543211 110  


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~  163 (724)
                      .....++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus        88 ~~~~~~~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~  166 (262)
T 3r9q_A           88 HGPGPMG-PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLI  166 (262)
T ss_dssp             TSSCTTS-STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred             hhhhHHH-HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            0011122 346789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (724)
                      +||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++                                  
T Consensus       167 ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------  212 (262)
T 3r9q_A          167 LTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVR----------------------------------  212 (262)
T ss_dssp             HHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH----------------------------------
T ss_pred             HcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999875443                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                        .+|++++.....+++++++.|.+ +..++.| |++|++++|++||+|.+
T Consensus       213 --~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~  259 (262)
T 3r9q_A          213 --ADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHG  259 (262)
T ss_dssp             --HHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC------------------
T ss_pred             --HHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCC
Confidence              45778888888999999999999 9999999 99999999999998875

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=5.2e-49  Score=409.90  Aligned_cols=256  Identities=21%  Similarity=0.316  Sum_probs=226.5

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC---
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (724)
                      +|++|.++.++++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......   
T Consensus         1 ~~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   80 (275)
T 1dci_A            1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence            36788898755789999999995 89999999999999999999999999999999999999999999886531110   


Q ss_pred             cc-------cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhh
Q 004918           78 DV-------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (724)
Q Consensus        78 ~~-------~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l  150 (724)
                      +.       ..+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l  159 (275)
T 1dci_A           81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             hhhhhhHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence            00       01112233455 66899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccH-HHHHHHHHcCCCCCHHHHHHCCCcceecCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHH
Q 004918          151 PRLVGL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  228 (724)
Q Consensus       151 ~r~~G~-~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (724)
                      ++++|. .+|++|++||++++|+||+++||||+|||+ +++.+++.++|++|++.++.+++                   
T Consensus       160 ~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~-------------------  220 (275)
T 1dci_A          160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ-------------------  220 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred             HHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHH-------------------
Confidence            999999 999999999999999999999999999999 99999999999999999875443                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---hhhcC
Q 004918          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ---RATSK  294 (724)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~---r~~~~  294 (724)
                                       .+|++++.+...+++++++.|...+..++.|+|++|++++|++|   |+|+.
T Consensus       221 -----------------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f  272 (275)
T 1dci_A          221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF  272 (275)
T ss_dssp             -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred             -----------------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                             45677888888889999999999999999999999999999999   77764

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.5e-49  Score=410.91  Aligned_cols=253  Identities=23%  Similarity=0.241  Sum_probs=223.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhc-c-CCCccc
Q 004918            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV-H-GAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~-~-~~~~~~   80 (724)
                      ++.+.++.++++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++ +... . ......
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~~   87 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEALL   87 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHHH
Confidence            456888773578999999999999999999999999999999999999999999999999999999 7542 1 101011


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  166 (264)
T 1wz8_A           88 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  166 (264)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            1223344556 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|++||++++|+||+++||||+|||++++.+++.++++++++.++.+++                               
T Consensus       167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  215 (264)
T 1wz8_A          167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH-------------------------------  215 (264)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998865432                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                           .+|++++.+... ++++++.|.+.+..++.|+|++|++++|++||+|..
T Consensus       216 -----~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  263 (264)
T 1wz8_A          216 -----HTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  263 (264)
T ss_dssp             -----HHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence                 446677777777 899999999999999999999999999999988763

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.3e-49  Score=411.60  Aligned_cols=253  Identities=27%  Similarity=0.412  Sum_probs=223.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++......... 
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~-   85 (267)
T 3r9t_A            8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHP-   85 (267)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCT-
T ss_pred             CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhH-
Confidence            46799999 7899999999995 7999999999999999999999999999999999 599999999998754322211 


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .........+ . ..++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        86 ~~~~~~~~~~-~-~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  163 (267)
T 3r9t_A           86 DHPEWGFAGY-V-RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAM  163 (267)
T ss_dssp             TCGGGCGGGT-T-TCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHH
T ss_pred             HHHhHHHHHH-H-HHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHH
Confidence            1011100112 1 3489999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++                               
T Consensus       164 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------  212 (267)
T 3r9t_A          164 RLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQ-------------------------------  212 (267)
T ss_dssp             HHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999875443                               


Q ss_pred             ChhHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          241 MPQHQACLDV---IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       241 ~~a~~~~~~~---~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                           .+|++   ++.+...+++++++.|...+..++.|+|++|++++|++||+|+..
T Consensus       213 -----~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  265 (267)
T 3r9t_A          213 -----ASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ  265 (267)
T ss_dssp             -----HHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                 45667   777777889999999999999999999999999999999988753

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=1.3e-49  Score=414.60  Aligned_cols=253  Identities=25%  Similarity=0.346  Sum_probs=214.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +.|.++. +++|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++........... 
T Consensus        20 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~-   97 (278)
T 4f47_A           20 PDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD-   97 (278)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC--------------------
T ss_pred             CceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH-
Confidence            5688898 7899999999995 799999999999999999999999999999999999999999999865432211110 


Q ss_pred             chhHHHHHHHHHh---cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           83 PDVSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        83 ~~~~~~~~~~~l~---~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ......++ +.+.   ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        98 ~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a  176 (278)
T 4f47_A           98 GSYDPSRI-DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVA  176 (278)
T ss_dssp             ---CTTCB-TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHH
T ss_pred             HHHHHHHH-HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence            00111222 3455   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|+|++++.+++.++|+++++.++.+++                              
T Consensus       177 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  226 (278)
T 4f47_A          177 CDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQ------------------------------  226 (278)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                            .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       227 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~  276 (278)
T 4f47_A          227 ------AILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ  276 (278)
T ss_dssp             ------HHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                  56788888888899999999999999999999999999999999988753

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=3.8e-49  Score=407.38  Aligned_cols=253  Identities=18%  Similarity=0.179  Sum_probs=217.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC-CCc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-AGD   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~   78 (724)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.| ++|+|||||.|++||+|+|++++..... ...
T Consensus         4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (267)
T 3hp0_A            4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK   81 (267)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred             CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence            6788999999 8999999999996 7999999999999999999986 6999999999999999999999876421 122


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      .........+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~  159 (267)
T 3hp0_A           82 QASSQEPLYDLW-MKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK  159 (267)
T ss_dssp             SCCCCHHHHHHH-HHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence            233444555666 679999999999999999999999999999999999999999999999999885 778999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|++||++++|+||+++||||+|||+.+  +.+.++++++++.|+.+++                             
T Consensus       160 A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~-----------------------------  208 (267)
T 3hp0_A          160 AHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIA-----------------------------  208 (267)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999998654  3467889999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                             .+|++++... ...+++++.|.+.+..++.|+|++|++++|++||+|.+.+
T Consensus       209 -------~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~  258 (267)
T 3hp0_A          209 -------HYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED  258 (267)
T ss_dssp             -------HHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred             -------HHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence                   3456666643 3467788899999999999999999999999999999765

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=3.4e-49  Score=409.87  Aligned_cols=254  Identities=24%  Similarity=0.299  Sum_probs=214.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-----CC-CCccCCCCchhhhhccC
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-----NG-GRFSGGFDINVFQKVHG   75 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g-----~g-~~F~aG~Dl~~~~~~~~   75 (724)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||     .| ++||+|+|++++.....
T Consensus         9 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~   87 (275)
T 4eml_A            9 YDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY   87 (275)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccc
Confidence            67799999 7999999999996 79999999999999999999999999999999     88 59999999998864211


Q ss_pred             CCcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      .............++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|++|
T Consensus        88 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG  166 (275)
T 4eml_A           88 IDDQGTPRLNVLDLQ-RLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG  166 (275)
T ss_dssp             -------CCCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred             cchhhHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhH
Confidence            111111111234555 6789999999999999999999999999999999999999999999999998888999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.|+.+++                          
T Consensus       167 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------  220 (275)
T 4eml_A          167 QKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIR--------------------------  220 (275)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999875543                          


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                                .+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|...
T Consensus       221 ----------~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  269 (275)
T 4eml_A          221 ----------CLKAAFNADCD-GQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFS  269 (275)
T ss_dssp             ----------HHHHHHHHTTS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCT
T ss_pred             ----------HHHHHHHhhhc-cchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                      34556665442 23344457778888999999999999999999998754

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.3e-49  Score=407.20  Aligned_cols=250  Identities=25%  Similarity=0.379  Sum_probs=217.3

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      +++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus        13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   91 (265)
T 3qxi_A           13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEG   91 (265)
T ss_dssp             --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETT
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhh
Confidence            356799999 7999999999996 79999999999999999999999999999999999999999999986532211111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                         ... . + ..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        92 ---~~~-~-~-~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  164 (265)
T 3qxi_A           92 ---RGL-G-F-TERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAM  164 (265)
T ss_dssp             ---TEE-T-T-TTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHH
T ss_pred             ---hhh-h-H-HHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHH
Confidence               111 1 2 22444 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|++||++++|+||+++||||+|||++++.+++.++|++|++.++.+++                               
T Consensus       165 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------  213 (265)
T 3qxi_A          165 ELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVA-------------------------------  213 (265)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999875433                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                           .+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       214 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3qxi_A          214 -----ATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT  263 (265)
T ss_dssp             -----HHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                 45778888888899999999999999999999999999999999988753

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=3.7e-49  Score=410.95  Aligned_cols=252  Identities=23%  Similarity=0.290  Sum_probs=209.4

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc--
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~--   78 (724)
                      .++.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++ +|||||.|+.||+|+|++++........  
T Consensus        24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  101 (280)
T 2f6q_A           24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE  101 (280)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhH
Confidence            466788998 7899999999995 8999999999999999999999999 9999999999999999998864321110  


Q ss_pred             -ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       ...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus       102 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  180 (280)
T 2f6q_A          102 KAKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  180 (280)
T ss_dssp             HHHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence             001112234555 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.++++++++.++.+++                            
T Consensus       181 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  232 (280)
T 2f6q_A          181 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR----------------------------  232 (280)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999988764332                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~  292 (724)
                              .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|
T Consensus       233 --------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          233 --------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             --------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             --------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence                    34667777666678899999999999999999999999999999876

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1.4e-49  Score=412.47  Aligned_cols=252  Identities=22%  Similarity=0.266  Sum_probs=215.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-cccc
Q 004918            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (724)
                      +++|.++.++++|++||||||+.|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... ....
T Consensus        12 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   91 (272)
T 3qk8_A           12 FPSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIR   91 (272)
T ss_dssp             CTTEEEEECSTTEEEEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHH
Confidence            567999994458999999999999999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      +....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (272)
T 3qk8_A           92 IMREARDLV-LNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKY  170 (272)
T ss_dssp             HHHHHHHHH-HHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence            223344556 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |++||++++|+||+++||||+|||++++.+++.++|++|++.++.+++                                
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  218 (272)
T 3qk8_A          171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIR--------------------------------  218 (272)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999876544                                


Q ss_pred             hhHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          242 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~---~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                          .+|++++....   .+++..++.|    ..++.|+|++|++++|++||+|...
T Consensus       219 ----~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~  267 (272)
T 3qk8_A          219 ----WTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFT  267 (272)
T ss_dssp             ----HHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC-
T ss_pred             ----HHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                23344443322   2344555555    4688999999999999999998764

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.3e-49  Score=410.40  Aligned_cols=250  Identities=21%  Similarity=0.308  Sum_probs=212.3

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccCCCCchhhhhccCCCcccccch
Q 004918            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      +.++. +++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++.... ......+..
T Consensus         7 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~-~~~~~~~~~   84 (260)
T 1sg4_A            7 VEPDA-GAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAGYWK   84 (260)
T ss_dssp             EEEET-TTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHHHHH
T ss_pred             EEEEe-cCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccC-HHHHHHHHH
Confidence            34444 6889999999998899999999999999999999999999999999 78999999999875321 111112223


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe--CCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~--~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      ..++++ .+|.++||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        85 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  163 (260)
T 1sg4_A           85 AVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA  163 (260)
T ss_dssp             HHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHH
Confidence            344556 67999999999999999999999999999999999  899999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      +++|++++|+||+++||||+|+|++++.+++.+++++++..|+.+++                                 
T Consensus       164 lltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  210 (260)
T 1sg4_A          164 LQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ---------------------------------  210 (260)
T ss_dssp             HHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred             HHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875433                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                         .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+++|
T Consensus       211 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          211 ---LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             ---HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             ---HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence               3456666666667788899999999999999999999999999999876

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.4e-48  Score=405.35  Aligned_cols=252  Identities=26%  Similarity=0.336  Sum_probs=217.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccCCCCchhhhhccCCCccc
Q 004918            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      ++.+.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|+ +||+|+|++++..... ....
T Consensus        12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~-~~~~   89 (273)
T 2uzf_A           12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGY-VGED   89 (273)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CCS
T ss_pred             CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhcccc-chhh
Confidence            45688888 789999999999 589999999999999999999999999999999998 9999999998854211 1111


Q ss_pred             cc-chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           81 LM-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~-~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .+ ......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  168 (273)
T 2uzf_A           90 QIPRLNVLDLQ-RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA  168 (273)
T ss_dssp             SSCCCTHHHHH-HHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHH
T ss_pred             hHHHhhHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            11 11133555 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|||++++.+++.++|+++++.++.+++                              
T Consensus       169 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  218 (273)
T 2uzf_A          169 REIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR------------------------------  218 (273)
T ss_dssp             HHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred             HHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEA-KVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~-~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                            .+|++++  ...+++++++.|. +.+..++.|+|++|++++|++||+|...
T Consensus       219 ------~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~  267 (273)
T 2uzf_A          219 ------FLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD  267 (273)
T ss_dssp             ------HHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCS
T ss_pred             ------HHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCC
Confidence                  3345555  2346889999999 9999999999999999999999888753

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=5.9e-49  Score=407.93  Aligned_cols=247  Identities=21%  Similarity=0.280  Sum_probs=221.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-cccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (724)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~  106 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK  106 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence            4688888 7999999999996 89999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      +......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus       107 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e  185 (276)
T 3rrv_A          107 TIRDGREIV-LGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE  185 (276)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            223344556 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |++||++++|+||+++||||+||  +++.+++.++|+++++.|+.+++                                
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~--------------------------------  231 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVE--------------------------------  231 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            99999999999999999999999  89999999999999999875443                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r  290 (724)
                          .+|++++.....+++++++.|...+..++.|+|++|++++|++||
T Consensus       232 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          232 ----STKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             ----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence                456677777777789999999999999999999999999999986

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=7.3e-49  Score=408.20  Aligned_cols=251  Identities=19%  Similarity=0.293  Sum_probs=205.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC--CCc-
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD-   78 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~~~-   78 (724)
                      ++.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....  ... 
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   86 (276)
T 2j5i_A            8 WKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL   86 (276)
T ss_dssp             CSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred             CceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence            45788888 7899999999995 899999999999999999999999999999999999999999998753211  110 


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+.......+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  166 (276)
T 2j5i_A           87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ  166 (276)
T ss_dssp             HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence            01111111222125588999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|++||++++|+||+++||||+|||++++.+++.++++++++.|+.+++                             
T Consensus       167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-----------------------------  217 (276)
T 2j5i_A          167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLR-----------------------------  217 (276)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hCCH-HHHHHHHHHHHhh
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL--VMLD-TSRGLVHVFFAQR  290 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~--~~s~-~~~~~~~af~~~r  290 (724)
                             .+|++++.+...+++++++.|.+.+..+  +.|+ |++|++++|++||
T Consensus       218 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          218 -------AAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK  265 (276)
T ss_dssp             -------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence                   4577888888888999999998887766  6799 9999999999998

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.5e-48  Score=404.34  Aligned_cols=252  Identities=22%  Similarity=0.323  Sum_probs=218.1

Q ss_pred             CCCCcEEEE----EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC
Q 004918            1 MAAPRVTME----VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (724)
Q Consensus         1 M~~~~v~~~----~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~   75 (724)
                      |+ +.+.++    . +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus         5 m~-~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   82 (267)
T 3oc7_A            5 MD-ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGS   82 (267)
T ss_dssp             CC-SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC---------
T ss_pred             cc-cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccC
Confidence            44 568888    6 7899999999996 799999999999999999999999999999999999999999999862111


Q ss_pred             CCcc----cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhc
Q 004918           76 AGDV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP  151 (724)
Q Consensus        76 ~~~~----~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~  151 (724)
                      ....    ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (267)
T 3oc7_A           83 PSSAYDMAVERAREMAALM-RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP  161 (267)
T ss_dssp             --CHHHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred             chhhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence            1111    01233444556 679999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHH
Q 004918          152 RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR  231 (724)
Q Consensus       152 r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (724)
                       ++|..+|++|++||++++|+||+++||||+|  ++++.+++.+++++|++.++.+++                      
T Consensus       162 -~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~----------------------  216 (267)
T 3oc7_A          162 -KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLA----------------------  216 (267)
T ss_dssp             -TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHH----------------------
T ss_pred             -HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHH----------------------
Confidence             8999999999999999999999999999999  789999999999999998875443                      


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          232 LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                                    .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       217 --------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  265 (267)
T 3oc7_A          217 --------------ASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW  265 (267)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred             --------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                          4567777777778999999999999999999999999999999998775

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.3e-49  Score=408.13  Aligned_cols=247  Identities=25%  Similarity=0.316  Sum_probs=192.2

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      +++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++....... ..
T Consensus        10 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~   87 (258)
T 3lao_A           10 GPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAAS-GF   87 (258)
T ss_dssp             SSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTT-BC
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchh-hH
Confidence            356799999 8999999999995 79999999999999999999999999999999999999999999987643222 11


Q ss_pred             ccchhHHHHHHHHH-hcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           81 LMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~~~~~~~~~~l-~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .+.....+.+ .++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        88 ~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  166 (258)
T 3lao_A           88 RYPDGGVDPW-GVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDA  166 (258)
T ss_dssp             CCCTTCCCTT-SCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            1222222334 557 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++                              
T Consensus       167 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  216 (258)
T 3lao_A          167 MRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVR------------------------------  216 (258)
T ss_dssp             HHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875433                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~  287 (724)
                            .+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       217 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          217 ------AALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             ------HHHHHHHHHTC-------------------------------
T ss_pred             ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence                  467788888888999999999999999999999999999995

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.2e-48  Score=407.89  Aligned_cols=257  Identities=25%  Similarity=0.341  Sum_probs=215.7

Q ss_pred             CCCCcEEEEEec-CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTMEVGN-DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~~~~-~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |++++|.++. + ++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus        24 ~~~~~v~~~~-~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  102 (289)
T 3t89_A           24 EGFEDIRYEK-STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK  102 (289)
T ss_dssp             TTCSSEEEEE-ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCeEEEEE-ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence            4567899999 6 899999999996 7999999999999999999999999999999999 4999999999885422111


Q ss_pred             c-ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           78 D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        78 ~-~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                      + ..........++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|++|.
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~  181 (289)
T 3t89_A          103 DDSGVHHLNVLDFQ-RQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ  181 (289)
T ss_dssp             -------CTHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence            1 111112234555 67999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .+|++|++||++|+|+||+++||||+|||++++.+++.++|++|+..++.+++                           
T Consensus       182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~---------------------------  234 (289)
T 3t89_A          182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR---------------------------  234 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------
T ss_pred             HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999875443                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                               .+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|....
T Consensus       235 ---------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~  284 (289)
T 3t89_A          235 ---------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSK  284 (289)
T ss_dssp             ---------HHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTT
T ss_pred             ---------HHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence                     34556665543 233444577888889999999999999999999988643

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=5.9e-49  Score=403.69  Aligned_cols=247  Identities=24%  Similarity=0.312  Sum_probs=200.0

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCccCCCCchhhhhccCCCcccccc
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      |.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+||||| .|++||+|+|++++...........+.
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence            66777 7899999999995 89999999999999999999999999999999 999999999999886432111001122


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~  163 (724)
                      ...++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++|+
T Consensus        81 ~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~  158 (250)
T 2a7k_A           81 DRVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII  158 (250)
T ss_dssp             HHHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH
Confidence            2344556 67999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (724)
                      +||++++|+||+++||||+|+|++++.+++.++++++++.|+.+++                                  
T Consensus       159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------  204 (250)
T 2a7k_A          159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI----------------------------------  204 (250)
T ss_dssp             HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH----------------------------------
T ss_pred             HcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998875432                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                        .+|+.++.+...+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       205 --~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          205 --NTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             --HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence              4566777766677899999999999999999999999999999874

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=5.7e-49  Score=410.86  Aligned_cols=256  Identities=21%  Similarity=0.289  Sum_probs=217.3

Q ss_pred             CCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC--
Q 004918            2 AAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--   77 (724)
                      .|+.|.++. +++|++|||| ||+ .|+||.+|+++|.++++.++.|+. |+|||||.|+.||+|+|++++.......  
T Consensus        21 ~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~   98 (291)
T 2fbm_A           21 TYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN   98 (291)
T ss_dssp             CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred             CcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence            466788998 8899999999 684 799999999999999999998875 9999999999999999999885421100  


Q ss_pred             -cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                       ....+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        99 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  177 (291)
T 2fbm_A           99 TASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  177 (291)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence             0111222334555 66899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++                           
T Consensus       178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------  230 (291)
T 2fbm_A          178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLE---------------------------  230 (291)
T ss_dssp             HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHH---------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999998875433                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhhhhcCCC
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF-FAQRATSKVP  296 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af-~~~r~~~~~~  296 (724)
                               .+|++++.....+++++++.|.+.+..++.|+|++|++.+| ++||+|....
T Consensus       231 ---------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~  282 (291)
T 2fbm_A          231 ---------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP  282 (291)
T ss_dssp             ---------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred             ---------HHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                     45677777766778999999999999999999999999999 9999987543

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=6.6e-49  Score=405.73  Aligned_cols=252  Identities=20%  Similarity=0.274  Sum_probs=222.5

Q ss_pred             CCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC---
Q 004918            3 APRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~---   77 (724)
                      |+++.++. +++|++|||| || +.|+||.+|+++|.++++.++.|+ +|+|||||.|++||+|+|++++.......   
T Consensus         4 ~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            4 YRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             cceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            56788998 7899999999 58 479999999999999999999887 49999999999999999999875421111   


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                      ....+.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        82 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  160 (261)
T 2gtr_A           82 ESTKMAEAIRNFV-NTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA  160 (261)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHH
Confidence            0111222334555 668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|++|++||++++|+||+++||||+|||++++.+++.++++++++.|+.+++                            
T Consensus       161 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------  212 (261)
T 2gtr_A          161 SANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLE----------------------------  212 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                              .+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       213 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  260 (261)
T 2gtr_A          213 --------ESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE  260 (261)
T ss_dssp             --------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence                    456677777666789999999999999999999999999999999886

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=2.2e-48  Score=405.98  Aligned_cols=247  Identities=21%  Similarity=0.287  Sum_probs=221.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCC-ccCCCCchhhhhccCCCcc--
Q 004918            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDV--   79 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~-F~aG~Dl~~~~~~~~~~~~--   79 (724)
                      ++.|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|+. ||+|+|++++.........  
T Consensus         7 ~~~v~~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~   85 (289)
T 3h0u_A            7 YETIKARL-DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAG   85 (289)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTS
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhH
Confidence            67899999 7999999999999999999999999999999999999999999999965 5667799988653211100  


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ........+++ .+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+
T Consensus        86 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~  164 (289)
T 3h0u_A           86 GPGDASLGMLF-RKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGR  164 (289)
T ss_dssp             STTCCSHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHH
Confidence            12333455666 6799999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|++||++|+|+||+++||||+|||++++.+++.++|++|++.||.+++                             
T Consensus       165 A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~-----------------------------  215 (289)
T 3h0u_A          165 ALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALI-----------------------------  215 (289)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA  288 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~  288 (724)
                             .+|++++.... +++++++.|.+.+..++.|+|++|++++|++
T Consensus       216 -------~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          216 -------AAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             -------HHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence                   45677887777 8999999999999999999999999999999

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=2e-48  Score=401.67  Aligned_cols=253  Identities=33%  Similarity=0.430  Sum_probs=223.3

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         2 ~~~~v~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      +|+.+.++..  .++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   81 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDC   81 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHH
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHH
Confidence            4667777762  5689999999995 799999999999999999999999999999999999999999998753211000


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                         ........+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        82 ---~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  157 (260)
T 1mj3_A           82 ---YSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             ---HHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             ---HHHHHHHHH-HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence               000011123 4588999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|++||++++|+||+++||||+|+|++++.+++.+++++++..++.+++                             
T Consensus       158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  208 (260)
T 1mj3_A          158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA-----------------------------  208 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                             .+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|..
T Consensus       209 -------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  257 (260)
T 1mj3_A          209 -------MAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             -------HHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                   4677888888889999999999999999999999999999999988764

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-48  Score=401.64  Aligned_cols=248  Identities=25%  Similarity=0.358  Sum_probs=220.0

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhcc--CCCccccc
Q 004918            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH--GAGDVSLM   82 (724)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~~~~~~~   82 (724)
                      +.++  +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....  ...+....
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence            4555  5789999999996 89999999999999999999999999999999999999999999886531  11100000


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      ....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+|++|
T Consensus        80 ~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l  157 (253)
T 1uiy_A           80 SLSLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDL  157 (253)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHH
Confidence            01134555 679999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      ++||++++|+||+++||||+|+|++++.+++.++++++++.++.+++                                 
T Consensus       158 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  204 (253)
T 1uiy_A          158 LLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR---------------------------------  204 (253)
T ss_dssp             HHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred             HHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998864432                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                         .+|+.++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       205 ---~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          205 ---LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             ---HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence               457788888888999999999999999999999999999999988765

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=1.1e-48  Score=414.40  Aligned_cols=256  Identities=24%  Similarity=0.268  Sum_probs=187.2

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-------CccCCCCchhhhhc
Q 004918            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-------RFSGGFDINVFQKV   73 (724)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-------~F~aG~Dl~~~~~~   73 (724)
                      +++|.++.+ +++|++||||||+ +|+||.+|+++|.++++.++.|+++|+|||||.|+       .||+|+|++++...
T Consensus        54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            567999983 4899999999996 69999999999999999999999999999999996       89999999987432


Q ss_pred             cCC----------CcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCccC
Q 004918           74 HGA----------GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIP  142 (724)
Q Consensus        74 ~~~----------~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~P  142 (724)
                      ...          ............++ +.|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             --------------------CCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             cccccccccchhhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            110          00001111233455 67899999999999999999999999999999999 9999999999999999


Q ss_pred             CcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHH
Q 004918          143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSE  222 (724)
Q Consensus       143 ~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~  222 (724)
                      ++|++++|+|++|..+|++|++||++|+|+||+++||||+|||++++++++.++|++|++.++.+++             
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~-------------  279 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR-------------  279 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999876543             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                                             .+|++++.... .+...+..|.+.+..++.|+|++|++.+|++||+|...+
T Consensus       280 -----------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~  329 (334)
T 3t8b_A          280 -----------------------MLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  329 (334)
T ss_dssp             -----------------------HHHHHHHHTCC-CC-------------------------------------
T ss_pred             -----------------------HHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                                   34566666543 455566778888899999999999999999999988643

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=2.5e-48  Score=401.34  Aligned_cols=250  Identities=24%  Similarity=0.314  Sum_probs=206.5

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccC--CC--
Q 004918            2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AG--   77 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~~--   77 (724)
                      +++.+.++..+++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....  ..  
T Consensus         4 ~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (263)
T 3l3s_A            4 SQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGR   83 (263)
T ss_dssp             ----CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSH
T ss_pred             CccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccH
Confidence            46677777768899999999995599999999999999999999999999999999999999999998865311  11  


Q ss_pred             -cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccH
Q 004918           78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL  156 (724)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~  156 (724)
                       ....+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|.
T Consensus        84 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~-~g~~~~l~r~vG~  161 (263)
T 3l3s_A           84 AFVTDLFEACSALM-LDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFC-TTPAVAVSRVIGR  161 (263)
T ss_dssp             HHHHHHHHHHHHHH-HHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCC-HHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCC-ccHHHHHHHHcCH
Confidence             1112223344555 679999999999999999999999999999999999999999999999995 6789999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004918          157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  236 (724)
Q Consensus       157 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (724)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                           
T Consensus       162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------  214 (263)
T 3l3s_A          162 RAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLR---------------------------  214 (263)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHH---------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999875443                           


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004918          237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  289 (724)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~  289 (724)
                               .+|++++.....+++++++.|.+.+..++.|+|++|++++|.+.
T Consensus       215 ---------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~  258 (263)
T 3l3s_A          215 ---------RGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH  258 (263)
T ss_dssp             ---------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred             ---------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence                     46778888888999999999999999999999999999999864

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=1.2e-48  Score=401.20  Aligned_cols=244  Identities=25%  Similarity=0.382  Sum_probs=200.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....       
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~-------   79 (256)
T 3pe8_A            8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTT-------   79 (256)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhH-------
Confidence            45788998 8999999999996 79999999999999999999999999999999999999999999886431       


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                         ...... ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus        80 ---~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  155 (256)
T 3pe8_A           80 ---ELPDIS-PKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR  155 (256)
T ss_dssp             --------C-CCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             ---HHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence               011222 4578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |+++|++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++                                
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  203 (256)
T 3pe8_A          156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVR--------------------------------  203 (256)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875443                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhhhcC
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL---VMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~---~~s~~~~~~~~af~~~r~~~~  294 (724)
                          .+|++++.+...+++++++.|.+.+...   ..++|+++++.+|++|+++.+
T Consensus       204 ----~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~  255 (256)
T 3pe8_A          204 ----ALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV  255 (256)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence                4567788877888999999999997654   677788999999999999864

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=5.6e-48  Score=400.11  Aligned_cols=243  Identities=28%  Similarity=0.448  Sum_probs=215.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      |+ +.|.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ....
T Consensus        22 m~-~~v~~~~-~~~Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~   98 (277)
T 4di1_A           22 MN-EFVSVVA-DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNA-PEAD   98 (277)
T ss_dssp             -C-CSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCH-HHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccCh-HHHH
Confidence            44 5688999 7999999999996699999999999999999999999999999999999999999999875321 1122


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+.....+++ .+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        99 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (277)
T 4di1_A           99 TAARVRLEAI-DAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK  177 (277)
T ss_dssp             HHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence            2233444556 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                               
T Consensus       178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  226 (277)
T 4di1_A          178 ELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALA-------------------------------  226 (277)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHH-------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998875433                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                           .+|++++.+...+++++++.|.+.+..++.|+          +||+|+
T Consensus       227 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~  264 (277)
T 4di1_A          227 -----AAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG  264 (277)
T ss_dssp             -----HHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred             -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence                 56788899889999999999999999999998          888877

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.3e-48  Score=396.59  Aligned_cols=241  Identities=26%  Similarity=0.358  Sum_probs=209.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccc
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      ++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.| ++|+|||||.|++||+|+|++...      ....
T Consensus        20 ~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~------~~~~   91 (264)
T 3he2_A           20 GSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA------FAAD   91 (264)
T ss_dssp             --CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT------TGGG
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch------hhHH
Confidence            35688888 8899999999995 7999999999999999999988 999999999999999999998311      1122


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      +.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (264)
T 3he2_A           92 YPDRLIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA  170 (264)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHH
Confidence            233445566 6799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |++||++++|+||+++||||+|++    .+++.++|+++++.|+.+++                                
T Consensus       171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~--------------------------------  214 (264)
T 3he2_A          171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQ--------------------------------  214 (264)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999996    36789999999998875443                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                          .+|++++..  .+++++++.|.+.+..++.|+|++|++.+|++||+|..
T Consensus       215 ----~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f  261 (264)
T 3he2_A          215 ----HAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKF  261 (264)
T ss_dssp             ----HHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ----HHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence                345666665  34667788899999999999999999999999999875

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.5e-47  Score=397.50  Aligned_cols=252  Identities=26%  Similarity=0.418  Sum_probs=218.0

Q ss_pred             cEEEEE---ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcc
Q 004918            5 RVTMEV---GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         5 ~v~~~~---~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      .+.++.   .+++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.| ++||+|+|++++..... .+.
T Consensus         9 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~   87 (272)
T 1hzd_A            9 ELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS-SEV   87 (272)
T ss_dssp             SEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH-HHH
T ss_pred             cEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh-HHH
Confidence            455543   26789999999996 7999999999999999999999999999999998 69999999998754211 111


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      ..+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        88 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  166 (272)
T 1hzd_A           88 GPFVSKIRAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA  166 (272)
T ss_dssp             HHHHHHHHHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHH
Confidence            11222344555 67999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchH----HHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEEL----LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  235 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l----~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (724)
                      ++|++||++++|+||+++||||+|+|++++    .+.+.+++++++..+|.++                           
T Consensus       167 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~---------------------------  219 (272)
T 1hzd_A          167 KELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAM---------------------------  219 (272)
T ss_dssp             HHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHH---------------------------
T ss_pred             HHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence            999999999999999999999999998875    4567777777777665432                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                               ..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|..
T Consensus       220 ---------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  269 (272)
T 1hzd_A          220 ---------RVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY  269 (272)
T ss_dssp             ---------HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred             ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence                     24577888888889999999999999999999999999999999998775

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=406.07  Aligned_cols=289  Identities=23%  Similarity=0.310  Sum_probs=224.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCc--
Q 004918            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD--   78 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~--   78 (724)
                      .+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........  
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~   83 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI   83 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence            35688888 7899999999995 7999999999999999999999999999999998 89999999998864321111  


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ...+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +
T Consensus        84 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~  161 (363)
T 3bpt_A           84 APVFFREEYMLN-NAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L  161 (363)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence            111112223445 67899999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhcc------------CCC---------
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT------------DKL---------  217 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~------------~~~---------  217 (724)
                      |++|++||++|+|+||+++||||+|||++++.+.+.++++ +...++..+....+.            ..+         
T Consensus       162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~  240 (363)
T 3bpt_A          162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINS  240 (363)
T ss_dssp             HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHH
Confidence            9999999999999999999999999999998776554432 111111111110000            000         


Q ss_pred             ----CCcHHHHHHH-----HHHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004918          218 ----GSLSEAREVL-----KLARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (724)
Q Consensus       218 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~  287 (724)
                          +........+     ..+....++...+-| +...+|++++.+...+++++++.|.+.+..++.|+|++|++++|+
T Consensus       241 ~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl  320 (363)
T 3bpt_A          241 CFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVL  320 (363)
T ss_dssp             HTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhhee
Confidence                0000000001     011123344444455 566789999999999999999999999999999999999999999


Q ss_pred             -Hh-hhhcCC
Q 004918          288 -AQ-RATSKV  295 (724)
Q Consensus       288 -~~-r~~~~~  295 (724)
                       +| |+|++.
T Consensus       321 ~eK~r~P~~~  330 (363)
T 3bpt_A          321 IDKDQSPKWK  330 (363)
T ss_dssp             TSCCCCCCCS
T ss_pred             eCCCCCCCCC
Confidence             77 777654

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=4.7e-47  Score=389.74  Aligned_cols=242  Identities=19%  Similarity=0.299  Sum_probs=203.7

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccc
Q 004918            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      .|.++. +++|++||||||+ .|++|.+|+++|.++++.+++ +++|+|||||.|++||+|+|++++....... .....
T Consensus         8 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~   84 (254)
T 3isa_A            8 PLAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGD-LLLRM   84 (254)
T ss_dssp             SEEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHH-HHHHH
T ss_pred             eEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchh-HHHHH
Confidence            388998 8999999999995 899999999999999999987 5899999999999999999999986432111 11111


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM  163 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~  163 (724)
                      ...+.++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|..+|++|+
T Consensus        85 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~  160 (254)
T 3isa_A           85 VRIEMLL-QRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL  160 (254)
T ss_dssp             HHHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence            2234455 679999999999999999999999999999999999999999999999998   479999999999999999


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (724)
                      +||++++|+||+++||||+|||++++.+++.++++++++.++.+++                                  
T Consensus       161 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------  206 (254)
T 3isa_A          161 GSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA----------------------------------  206 (254)
T ss_dssp             TTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred             HhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence            9999999999999999999999999999999999999998875443                                  


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                        .+|+.+.       .+.++.|.+.+..++.|+|++|++.+|++||+|.+.+
T Consensus       207 --~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~  250 (254)
T 3isa_A          207 --TLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHH  250 (254)
T ss_dssp             --HHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC-------
T ss_pred             --HHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence              2333442       1234567888999999999999999999999999865

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=4e-47  Score=387.66  Aligned_cols=237  Identities=23%  Similarity=0.300  Sum_probs=212.1

Q ss_pred             EEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchh
Q 004918            7 TMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (724)
Q Consensus         7 ~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (724)
                      .++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... . ..   
T Consensus         6 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-~~---   79 (243)
T 2q35_A            6 LTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGE-V-EV---   79 (243)
T ss_dssp             EEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTC-C-CC---
T ss_pred             EEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchh-h-HH---
Confidence            3555 7899999999995 89999999999999999999999999999999999999999999886532111 1 11   


Q ss_pred             HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHc
Q 004918           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (724)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~lt  165 (724)
                       ++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++|
T Consensus        80 -~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~lt  157 (243)
T 2q35_A           80 -LDLS-GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYT  157 (243)
T ss_dssp             -CCCH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHH
T ss_pred             -HHHH-HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHc
Confidence             2344 56889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004918          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (724)
                      |++++|+||+++||||+|+|++++.+++.++++++++.++.+++                                    
T Consensus       158 g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------  201 (243)
T 2q35_A          158 GENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLV------------------------------------  201 (243)
T ss_dssp             CCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHH------------------------------------
T ss_pred             CCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence            99999999999999999999999999999999999998875433                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004918          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  287 (724)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~  287 (724)
                      .+|+.++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       202 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          202 ALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence            346677776666788999999999999999999999999874

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=6.2e-47  Score=411.59  Aligned_cols=286  Identities=17%  Similarity=0.232  Sum_probs=222.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCC-----
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-----   76 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~-----   76 (724)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus        42 ~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           42 QTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             ceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            3466666 7899999999996 7999999999999999999999999999999999 799999999998653210     


Q ss_pred             -CcccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        77 -~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                       .....+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus       121 ~~~~~~~~~~~~~l~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g  199 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLD-YLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG  199 (407)
T ss_dssp             CHHHHHHHHHHHHHH-HHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred             HHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence             11112222233455 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHH---H----------------HHHHHHHHHccCc-----------
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK---V----------------SRLWALDIAARRK-----------  205 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~---~----------------a~~~a~~la~~~~-----------  205 (724)
                       .+|++|++||++|+|+||+++||||+|||++++.+   +                +.++++++.....           
T Consensus       200 -~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~  278 (407)
T 3ju1_A          200 -KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES  278 (407)
T ss_dssp             -THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred             -HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence             99999999999999999999999999999999887   3                3333333322110           


Q ss_pred             -hhhhhhhccCCCCCcHHHHHHH-------HHHHHHHHHh-CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Q 004918          206 -PWIRSLHRTDKLGSLSEAREVL-------KLARLQAKKT-APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML  276 (724)
Q Consensus       206 -~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s  276 (724)
                       .++.....    .++......+       ..+....++. .+.-.+...+|+.++.+...+++++++.|.+.+..++.+
T Consensus       279 ~~~I~~~f~----~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s  354 (407)
T 3ju1_A          279 QEMIDRLMA----GSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK  354 (407)
T ss_dssp             HHHHHHHTC----SCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----CCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC
Confidence             00111100    1111110000       0111111211 122346777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-Hh-hhhcCCC
Q 004918          277 DTSRGLVHVFF-AQ-RATSKVP  296 (724)
Q Consensus       277 ~~~~~~~~af~-~~-r~~~~~~  296 (724)
                      +|++|++++|+ +| |+|++.+
T Consensus       355 ~D~~EGvrAflidKdr~P~w~~  376 (407)
T 3ju1_A          355 GDFCEGVRALLIDKDKQPKWQF  376 (407)
T ss_dssp             SSHHHHHHHHTTSCCCCCCCSS
T ss_pred             HHHHHHHHHHHhcCCcCCCCCC
Confidence            99999999999 87 8877755

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.8e-46  Score=391.36  Aligned_cols=243  Identities=19%  Similarity=0.180  Sum_probs=203.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc-
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-   78 (724)
                      |+|+.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........ 
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN   84 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccccccc
Confidence            5677899999 7899999999995 899999999999999999999999999999999999999999998754211110 


Q ss_pred             --cc---ccc----hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCccCCcchhh
Q 004918           79 --VS---LMP----DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQ  148 (724)
Q Consensus        79 --~~---~~~----~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~P~~g~~~  148 (724)
                        ..   .+.    ...+.++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           85 KYPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence              00   011    1113455 66899999999999999999999999999999999 9999999999999999999999


Q ss_pred             hhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcc-----hHHHHHH-HHHHHHHccCchhhhhhhccCCCCCcHH
Q 004918          149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-----ELLKVSR-LWALDIAARRKPWIRSLHRTDKLGSLSE  222 (724)
Q Consensus       149 ~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~-----~l~~~a~-~~a~~la~~~~~~~~~~~~~~~~~~~~~  222 (724)
                      +|+|++|..+|++|++||++++|+||+++||||+|||++     ++.+++. ++++++++.|+.+++             
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~-------------  230 (280)
T 1pjh_A          164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCL-------------  230 (280)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHH-------------
T ss_pred             HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence            999999999999999999999999999999999999985     7888885 999999998875443             


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                                             .+|++++...    ...++        ...++|+++++.+|+++|++.
T Consensus       231 -----------------------~~K~~l~~~~----~~~l~--------~~~~~d~~e~~~af~~kr~~e  266 (280)
T 1pjh_A          231 -----------------------GMKKLLKSNH----IDAFN--------KANSVEVNESLKYWVDGEPLK  266 (280)
T ss_dssp             -----------------------HHHHHHHTTT----HHHHH--------HHHHHHHHHHHHHHHHTHHHH
T ss_pred             -----------------------HHHHHHHHhH----HHHHH--------HhhhHHHHHHHHHHhCCccHH
Confidence                                   3445555433    22222        124889999999999999884

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=6.5e-46  Score=376.31  Aligned_cols=230  Identities=23%  Similarity=0.256  Sum_probs=201.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      |+ +.|.++. +++|++||||||+.|++|.+|+++|.++++++++| ++|+|||||.|++||+|+|++++.... .....
T Consensus         3 M~-~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~-~~~~~   78 (233)
T 3r6h_A            3 MS-GPVTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGE-AKPAI   78 (233)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCSSSCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC----CHHHH
T ss_pred             CC-CceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccC-hHHHH
Confidence            55 5688999 78999999999989999999999999999999987 699999999999999999999986532 11122


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        79 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~  157 (233)
T 3r6h_A           79 DMLRGGFELS-YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQ  157 (233)
T ss_dssp             HHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            2333444556 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                               
T Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  206 (233)
T 3r6h_A          158 QAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHN-------------------------------  206 (233)
T ss_dssp             HHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             HHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999875443                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFK  271 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~  271 (724)
                           .+|++++.....+++++++.|.+.|.
T Consensus       207 -----~~K~~l~~~~~~~l~~~l~~e~~~f~  232 (233)
T 3r6h_A          207 -----ATKLRARAEALKAIRAGIDGIEAEFG  232 (233)
T ss_dssp             -----HHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred             -----HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence                 45667777777788999999888764

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=8.7e-46  Score=381.12  Aligned_cols=238  Identities=16%  Similarity=0.214  Sum_probs=204.2

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      ++.|.++. ++ +|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus        22 ~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  100 (263)
T 2j5g_A           22 YENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWD  100 (263)
T ss_dssp             CTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHH
T ss_pred             CCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHH
Confidence            55688998 67 99999999995 79999999999999999999999999999999999999999999875421111111


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeC-cccccCccCCcchhhhhcccccHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~-pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      .+.....+++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++|..+|
T Consensus       101 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A  178 (263)
T 2j5g_A          101 KTYWEGKKVL-QNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRG  178 (263)
T ss_dssp             HHHHHHHHHH-HHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            1222234555 6689999999999999999 5999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|++||++++|+||+++||||+|||++++.+++.++++++++.++.+++                              
T Consensus       179 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------  228 (263)
T 2j5g_A          179 RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLR------------------------------  228 (263)
T ss_dssp             HHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875443                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  290 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r  290 (724)
                            .+|++++.....+++++++.|           ...|++++|++||
T Consensus       229 ------~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~  262 (263)
T 2j5g_A          229 ------YTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRN  262 (263)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC
T ss_pred             ------HHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhcc
Confidence                  345666665555566666554           4559999999987

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.4e-45  Score=373.63  Aligned_cols=225  Identities=21%  Similarity=0.288  Sum_probs=199.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      +.|.++. +++|++||||||+.|++|.+|+++|.+++++++.|  +|+|||||.|++||+|+|++++...  ......+.
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~--~~~~~~~~   80 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSS--AEAAINLV   80 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHC--HHHHHHHH
T ss_pred             cceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhC--hHHHHHHH
Confidence            3588888 79999999999989999999999999999999976  4999999999999999999998652  11122233


Q ss_pred             hhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHH
Q 004918           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM  162 (724)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l  162 (724)
                      ...++++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..+|++|
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l  159 (232)
T 3ot6_A           81 AQGSTLA-RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS  159 (232)
T ss_dssp             HHHHHHH-HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence            3445566 6799999999999999999999999999999999998 8999999999999888889999999999999999


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  242 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (724)
                      ++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                                 
T Consensus       160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------  206 (232)
T 3ot6_A          160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHK---------------------------------  206 (232)
T ss_dssp             HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred             HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence            99999999999999999999999999999999999999998875443                                 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004918          243 QHQACLDVIEEGIVHGGYSGVLKEAKVF  270 (724)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~  270 (724)
                         .+|++++.....+++++++.|.+.|
T Consensus       207 ---~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          207 ---KTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHhHhHHHHHHHHHHHhc
Confidence               4567788887788999999998764

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=2.4e-44  Score=378.66  Aligned_cols=255  Identities=18%  Similarity=0.188  Sum_probs=215.1

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcCCCCccCCCCchhhh
Q 004918            3 APRVTMEVG-NDGVAIITLINPP-----VNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGNGGRFSGGFDINVFQ   71 (724)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-----~Nal~~~~~~~l~~~l~~~~~-----d~~v~~vVl~g~g~~F~aG~Dl~~~~   71 (724)
                      |+++.+..+ +++|++||||||+     +|+||.+|+++|.++++.++.     |+++|+|||||.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            456666443 7899999999984     459999999999999999987     58999999999999999999999986


Q ss_pred             hccCCCccc---ccchhHHHHHHHHH---hcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcc
Q 004918           72 KVHGAGDVS---LMPDVSVELVVNLI---EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG  145 (724)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~~~~~~l---~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g  145 (724)
                      .........   .+.......+ ..+   ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  187 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGV-HAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG  187 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH-HHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred             hccccccHHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence            532111111   1111222223 223   468999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHH
Q 004918          146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEARE  225 (724)
Q Consensus       146 ~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~  225 (724)
                      ++++|+|++|..+|++|++||++|+|+||+++||||+|||++++++++.++|++|++ +|.++                 
T Consensus       188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a~-----------------  249 (305)
T 3m6n_A          188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHAW-----------------  249 (305)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHHH-----------------
T ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHHH-----------------
Confidence            999999999999999999999999999999999999999999999999999999985 54322                 


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          226 VLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       226 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                                         ..+|++++.....+++++++.|.+.+..++.|+|....+..++.+++.++.
T Consensus       250 -------------------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~~  300 (305)
T 3m6n_A          250 -------------------AAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRS  300 (305)
T ss_dssp             -------------------HHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred             -------------------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhcc
Confidence                               256788899999999999999999999999999998888877776665543

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=1.4e-43  Score=377.52  Aligned_cols=204  Identities=25%  Similarity=0.334  Sum_probs=174.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |.|++|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~  110 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG  110 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence            3567899999 8999999999995 7999999999999999999999999999999999999999999998653211100


Q ss_pred             -----------------------------cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCce
Q 004918           80 -----------------------------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ  130 (724)
Q Consensus        80 -----------------------------~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~  130 (724)
                                                   ..+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGF-ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHH-THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence                                         00112223344 568899999999999999999999999999999999999


Q ss_pred             eeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004918          131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (724)
Q Consensus       131 f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (724)
                      |++||+++|++|++|   +|++++|..+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.|+.+++
T Consensus       190 f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~  265 (333)
T 3njd_A          190 IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLI  265 (333)
T ss_dssp             EECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999876   5899999999999999999999999999999999999999999999999999999886554

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=4.2e-44  Score=367.94  Aligned_cols=237  Identities=18%  Similarity=0.235  Sum_probs=200.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccccc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (724)
                      +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... .......+
T Consensus        16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~~~~~~~   93 (257)
T 1szo_A           16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG-TPHDWDEI   93 (257)
T ss_dssp             TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS-SHHHHHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC-CHHHHHHH
Confidence            5689998 7899999999995 7999999999999999999999999999999999999999999987531 11111112


Q ss_pred             chhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeC-cccccCccCCcchhhhhcccccHHHHHH
Q 004918           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKAIE  161 (724)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~-pe~~~G~~P~~g~~~~l~r~~G~~~a~~  161 (724)
                      .....+++ .+|.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|..+|++
T Consensus        94 ~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~  171 (257)
T 1szo_A           94 IFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY  171 (257)
T ss_dssp             HHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHH-HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence            22234555 6689999999999999999 5999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  241 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (724)
                      |+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++                                
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  219 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR--------------------------------  219 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875443                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004918          242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  291 (724)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~  291 (724)
                          .+|++++.....+++++++.|..           .+++++|-.+.+
T Consensus       220 ----~~K~~l~~~~~~~l~~~l~~~~~-----------~eg~~a~~~~~~  254 (257)
T 1szo_A          220 ----YARKVLTRQLRRVMEADLSLGLA-----------HEALAAIDLGME  254 (257)
T ss_dssp             ----HHHHHHSHHHHHHHHHHHHHHHH-----------HHHHHHHHHC--
T ss_pred             ----HHHHHHHhhhhccHHHHHHHHHH-----------Hhhhhhhhcccc
Confidence                34556666555566666666543           367888877654

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=6.3e-44  Score=386.89  Aligned_cols=246  Identities=23%  Similarity=0.208  Sum_probs=200.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--------C-CCccCCCCchhhhhc
Q 004918            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--------G-GRFSGGFDINVFQKV   73 (724)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~--------g-~~F~aG~Dl~~~~~~   73 (724)
                      +.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.        | ++||+|+|++++...
T Consensus       167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4688888 7899999999995 799999999999999999999999999999994        6 799999999998643


Q ss_pred             cCCCccc---ccchhHHHHHHHHH------------hcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccccc
Q 004918           74 HGAGDVS---LMPDVSVELVVNLI------------EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (724)
Q Consensus        74 ~~~~~~~---~~~~~~~~~~~~~l------------~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~  138 (724)
                      .......   ........++ ..+            .++||||||+|||+|+|||++|+++||||||+++++|++||+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLV-RGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHH-HCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             CcchhhhhhHHHHHHHHHHH-HHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            2111000   0001122333 333            47999999999999999999999999999999999999999999


Q ss_pred             CccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC
Q 004918          139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG  218 (724)
Q Consensus       139 G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~  218 (724)
                      |++|++| +++|+|++|..+|++|++||++|+|+||+++||||+|||++++.+++.+++.+++.   .+           
T Consensus       325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~A-----------  389 (440)
T 2np9_A          325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---DA-----------  389 (440)
T ss_dssp             CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---HH-----------
T ss_pred             CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---HH-----------
Confidence            9999887 68999999999999999999999999999999999999999999999988877632   11           


Q ss_pred             CcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004918          219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGG---YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  292 (724)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~  292 (724)
                                               ...+|++++.... +.   .+.++.|...+..++.|+|++|++.+|++||+.
T Consensus       390 -------------------------v~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~a  440 (440)
T 2np9_A          390 -------------------------VLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPPA  440 (440)
T ss_dssp             -------------------------HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC-----
T ss_pred             -------------------------HHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence                                     1234556665543 33   356677788889999999999999999999863

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.7e-43  Score=366.59  Aligned_cols=205  Identities=27%  Similarity=0.348  Sum_probs=173.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |+++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus        17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   95 (279)
T 3t3w_A           17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL   95 (279)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred             ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence            4567899999 7899999999995 8999999999999999999999999999999999999999999988653221111


Q ss_pred             c-c---cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhccccc
Q 004918           80 S-L---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG  155 (724)
Q Consensus        80 ~-~---~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G  155 (724)
                      . .   .......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+++++.+ ++++|
T Consensus        96 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG  172 (279)
T 3t3w_A           96 EFIYAHESRRYLEYS-LRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELG  172 (279)
T ss_dssp             HHHHHHHHHHTHHHH-HHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcC
Confidence            0 1   111223445 6689999999999999999999999999999999999999999999999 55555544 99999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004918          156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (724)
Q Consensus       156 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (724)
                      ..+|++|++||++++|+||+++||||+|||++++.+++.++|+++++.|+.+++
T Consensus       173 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  226 (279)
T 3t3w_A          173 PRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALR  226 (279)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999998875443

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.9e-39  Score=353.37  Aligned_cols=275  Identities=20%  Similarity=0.247  Sum_probs=212.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-----------CCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEc-CCCCccCCCCchh
Q 004918            3 APRVTMEVGNDGVAIITLINPP-----------VNALAIPIVAGLKDKFEEATSR-DDVKAIVLTG-NGGRFSGGFDINV   69 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-----------~Nal~~~~~~~l~~~l~~~~~d-~~v~~vVl~g-~g~~F~aG~Dl~~   69 (724)
                      +++|.++. +++|++||||||+           .|++|.+|+.+|.+++++++.| +++|+||||| .|++||+|+|+++
T Consensus        20 ~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e   98 (556)
T 2w3p_A           20 YKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM   98 (556)
T ss_dssp             CSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred             CceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence            35688888 7899999999995           6999999999999999999999 9999999999 8999999999999


Q ss_pred             hhhccCCCcccccchhHHHHHHHHH----hcCCCcEEEEECccccchhHHHHhhcCEEEEeCC--ceeeCcccc-cCccC
Q 004918           70 FQKVHGAGDVSLMPDVSVELVVNLI----EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP  142 (724)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~G~~P  142 (724)
                      +...... ....+....++++ ..|    .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|++|
T Consensus        99 l~~~~~~-~~~~~~~~~~~l~-~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P  176 (556)
T 2w3p_A           99 LGLSTHA-WKVNFCKFTNETR-NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP  176 (556)
T ss_dssp             HHHSCHH-HHHHHHHHHHHHH-HHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred             HhhcccH-HHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence            8653211 1111222334555 567    8999999999999999999999999999999999  999999999 99999


Q ss_pred             Ccchhhhhc--ccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCC--CC
Q 004918          143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDK--LG  218 (724)
Q Consensus       143 ~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~--~~  218 (724)
                      ++|++++|+  |++|..+|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.++.+++. ++..+  +.
T Consensus       177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~~-K~l~~~~l~  255 (556)
T 2w3p_A          177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHA-QGVPLTRIE  255 (556)
T ss_dssp             TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTTC-CCCCCCCCC
T ss_pred             CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHhh-hhhhcchhh
Confidence            999999999  99999999999999999999999999999999999999999999999999998876542 11111  00


Q ss_pred             C-c-------HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHH
Q 004918          219 S-L-------SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTS-RGLVHVFFA  288 (724)
Q Consensus       219 ~-~-------~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~-~~~~~af~~  288 (724)
                      . +       ......+..++.. ..+.++..|++.+.++++.....            .|..+..+++. ...++.|+.
T Consensus       256 r~~~~~gl~y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~------------~~~~l~~~~el~~All~l~~n  323 (556)
T 2w3p_A          256 RTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGA------------NWWPLKFAREFDDAILSMRTN  323 (556)
T ss_dssp             CEEETTEEEETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGG------------GSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhh------------cchhhhhhhHHHHHHHhhhhc
Confidence            0 0       0000000011111 11344566777777777776543            33333344444 557788887


Q ss_pred             hhhhc
Q 004918          289 QRATS  293 (724)
Q Consensus       289 ~r~~~  293 (724)
                      .....
T Consensus       324 e~~~~  328 (556)
T 2w3p_A          324 ELAVG  328 (556)
T ss_dssp             CSSCC
T ss_pred             cHHHh
Confidence            65543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.88  E-value=1.9e-22  Score=224.51  Aligned_cols=148  Identities=11%  Similarity=0.095  Sum_probs=136.4

Q ss_pred             cCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHH
Q 004918          422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY  501 (724)
Q Consensus       422 ~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~  501 (724)
                      .+++.+.++.  ...+|.++++.|+++    ++++|+++++.|++++++.+..+++.+||+|++++|.||||+||++.++
T Consensus       324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~  397 (483)
T 3mog_A          324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI  397 (483)
T ss_dssp             ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred             ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence            5677777766  345688999999988    7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCc
Q 004918          502 SQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGK  575 (724)
Q Consensus       502 ~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~  575 (724)
                      +|||++++++|+ +++|||.++ .|+|||+|||+++|.+|+|++.++++.+++.+++++| |+++|++|+++|++|.
T Consensus       398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~  474 (483)
T 3mog_A          398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYE  474 (483)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCC
Confidence            999999999998 999999999 9999999999999999999999999999999987545 9999999999988654

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.87  E-value=1.8e-23  Score=185.59  Aligned_cols=103  Identities=20%  Similarity=0.153  Sum_probs=85.2

Q ss_pred             HcCCeeE-EEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004918          478 IIKKVPV-VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (724)
Q Consensus       478 ~lGk~~v-~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~  554 (724)
                      .++|.+| +++|.||||+||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999 88999999999999999999999999997 999999999 89999999999999999999999999999988


Q ss_pred             CC-CCCCcHHHHHHHHcCCCCcccCcc
Q 004918          555 PD-RSFQSPLVDLLLKSGRNGKANGKG  580 (724)
Q Consensus       555 ~~-~~~~~~~l~~~v~~g~~G~k~g~G  580 (724)
                      ++ ++.|++++++|+++|++|+|||+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            87 444889999999999999999998

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.79  E-value=3.1e-20  Score=212.08  Aligned_cols=168  Identities=20%  Similarity=0.212  Sum_probs=142.8

Q ss_pred             cCcEEEEEeCCCC-CCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHH
Q 004918           12 NDGVAIITLINPP-VNA--LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (724)
Q Consensus        12 ~~~v~~i~l~~p~-~Na--l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (724)
                      +++|++|++|+|. .|+  ++..+.++|.++|+.++.|+++|+|||++.+    .|+|+....             ...+
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~~-------------~i~~  362 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTASE-------------VIRA  362 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHHH-------------HHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHHH-------------HHHH
Confidence            5789999999994 677  6889999999999999999999999999874    477775421             1234


Q ss_pred             HHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCccc------------ccCccCCc------------
Q 004918           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGF------------  144 (724)
Q Consensus        89 ~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~P~~------------  144 (724)
                      .+ +++..++|||||+|+|.|.|||+.|+++||+++|++++.|+.+++            ++|+.|..            
T Consensus       363 ~i-~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~  441 (593)
T 3bf0_A          363 EL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  441 (593)
T ss_dssp             HH-HHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred             HH-HHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence            45 557889999999999999999999999999999999999999985            68987643            


Q ss_pred             -chh---------------hhhcccccHHH-----HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHH
Q 004918          145 -GGT---------------QRLPRLVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA  197 (724)
Q Consensus       145 -g~~---------------~~l~r~~G~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a  197 (724)
                       +.+               .++++.++..+     +.+++++|+.++|+||+++||||+|++.+++.+.+.+++
T Consensus       442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a  515 (593)
T 3bf0_A          442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA  515 (593)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHc
Confidence             233               56778888888     999999999999999999999999999888888777654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.79  E-value=7.3e-20  Score=194.24  Aligned_cols=204  Identities=17%  Similarity=0.205  Sum_probs=161.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.||.++|..|+.+|+ +|++||++++.++.....+.....            ......++..+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhCC
Confidence            589999999999999999999999 999999999887753222211100            0111245666678888999


Q ss_pred             CCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEE--EecCCCCCHHHHhcccCC-CCCEEEEecCCCC
Q 004918          388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPA  450 (724)
Q Consensus       388 aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~~-~~r~ig~h~~~p~  450 (724)
                      ||+||+++              +++.++++++++++.++++ ++++  +||++.+....+...... |+|++|+      
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------  145 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------  145 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence            99999999              7888999999999999975 7766  577776666666666654 6788874      


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhh---hhhHHHHHH-------HHHHHcCC-CHHHHH
Q 004918          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR---AFFPYSQSA-------RLLVSLGV-DVFRID  519 (724)
Q Consensus       451 ~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nR---l~~~~~~Ea-------~~l~~~Gv-~~~~ID  519 (724)
                                  .|+.++......+.+.+|+.+   ++.+||++||   .++++++++       ..++++|+ +++++|
T Consensus       146 ------------~t~ld~~r~~~~la~~lg~~~---~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id  210 (317)
T 2ewd_A          146 ------------AGVLDSSRFRTFIAQHFGVNA---SDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID  210 (317)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTSCG---GGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcCh---hhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence                        367888888889999999874   8999999999   889999998       88999985 999999


Q ss_pred             HHHHhcCCCccHHHHHHhhch-HHHHHHHH
Q 004918          520 SAIRSFGLPIGPFQLLDLAGY-GVAAATSK  548 (724)
Q Consensus       520 ~a~~~~g~~~Gp~~~~D~~Gl-d~~~~~~~  548 (724)
                      .++...  ++||++++|..|. ++.+.+..
T Consensus       211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a~  238 (317)
T 2ewd_A          211 EIVCHT--RIAWKEVADNLKTGTAYFAPAA  238 (317)
T ss_dssp             HHHHHH--HHHHHHHHHHHSSSCCCHHHHH
T ss_pred             HHHHHH--HhhHHHHHHhhcCCchHHHHHH
Confidence            998433  7899999998887 55544433

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.77  E-value=1.8e-18  Score=175.30  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=129.1

Q ss_pred             cCcEEEEEeCCC-CCC-----CCC--HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccc
Q 004918           12 NDGVAIITLINP-PVN-----ALA--IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (724)
Q Consensus        12 ~~~v~~i~l~~p-~~N-----al~--~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (724)
                      +++|++|+++.+ ..+     .++  .-.+++|.++|+.+..|+++|+|||++.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            568999999877 222     111  0136899999999999999999999986    5788886532            


Q ss_pred             hhHHHHHHHHHhc-CCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCc---------------------ccccCcc
Q 004918           84 DVSVELVVNLIED-CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP---------------------ELTLGVI  141 (724)
Q Consensus        84 ~~~~~~~~~~l~~-~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~p---------------------e~~~G~~  141 (724)
                       ...+.+ +.+.. ++|||||+++|.|.|||++|+++||+++|++++.|+.+                     +++.|..
T Consensus        66 -~i~~~l-~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~  143 (240)
T 3rst_A           66 -EIHKKL-EEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH  143 (240)
T ss_dssp             -HHHHHH-HHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred             -HHHHHH-HHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence             122444 44666 89999999999999999999999999999999999999                     6677777


Q ss_pred             CCcchhh--------------------------hhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHH
Q 004918          142 PGFGGTQ--------------------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  195 (724)
Q Consensus       142 P~~g~~~--------------------------~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (724)
                      ++.+..+                          .-.|.+......+ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus       144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~  222 (240)
T 3rst_A          144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK  222 (240)
T ss_dssp             TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            7665322                          2234455554444 789999999999999999999998887777666


Q ss_pred             HH
Q 004918          196 WA  197 (724)
Q Consensus       196 ~a  197 (724)
                      ++
T Consensus       223 ~~  224 (240)
T 3rst_A          223 DH  224 (240)
T ss_dssp             HC
T ss_pred             Hh
Confidence            54

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.77  E-value=3.9e-18  Score=177.55  Aligned_cols=189  Identities=15%  Similarity=0.086  Sum_probs=145.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      .+||+|||+|.||.+|+..|+++|+   +|++||++++++++..+.          .             .+..+++. +
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~-------------gi~~~~~~~~   59 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------C-------------GVHTTQDNRQ   59 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------T-------------CCEEESCHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------c-------------CCEEeCChHH
Confidence            4689999999999999999999999   999999999987765321          0             13334444 6


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeE-ecC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRT  461 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-i~~  461 (724)
                      .+++||+||+|||  ++...++++++.+. ++++++|+|++++++++.+...+..+.+++++||+.|...+..+++ +++
T Consensus        60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence            7899999999998  68889999999998 8899899999999999999998888889999999999999887775 568


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCC--chh-----hhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCT--GFA-----VNRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~p--G~i-----~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  522 (724)
                      +.++++.++.++++++.+|+.+++..+..  .+.     ..-+++ ++.|++.  .++.|+++++.-+++
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~~-~~~eal~~a~v~~Gl~~~~a~~l~  206 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIF-LIMEALQEAAEQLGLTKETAELLT  206 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            88999999999999999998554323210  000     011222 2233332  346788887766655

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.75  E-value=7.9e-19  Score=155.58  Aligned_cols=84  Identities=27%  Similarity=0.445  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  697 (724)
                      ++++|+||++.+++|||++|+++||+ |++|||.+|++|+|||+   |||+++|.+|+|+++++++.+++.+++ +|.|+
T Consensus        15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~   90 (110)
T 3ctv_A           15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLEELAKQFGKKIFEPA   90 (110)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence            57899999999999999999999999 99999999999999999   999999999999999999999999988 89999


Q ss_pred             HHHHHHHHc
Q 004918          698 RFLEERATK  706 (724)
Q Consensus       698 ~~l~~~~k~  706 (724)
                      ++|++|+++
T Consensus        91 ~~L~~~v~~   99 (110)
T 3ctv_A           91 KTLKEGKLE   99 (110)
T ss_dssp             HHHHTTTHH
T ss_pred             HHHHHHHHc
Confidence            999999843

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.74  E-value=1e-17  Score=166.94  Aligned_cols=148  Identities=23%  Similarity=0.302  Sum_probs=125.4

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004918           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (724)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (724)
                      .+.|++|++++    ++++.+.+.|.++|+.++++ ++++|||+..    |.|+|+...                ..++ 
T Consensus         7 ~~~V~vI~i~g----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~----------------~~i~-   60 (230)
T 3viv_A            7 KNIVYVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM----------------MNIV-   60 (230)
T ss_dssp             CCEEEEEEEES----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH----------------HHHH-
T ss_pred             CCeEEEEEEeC----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH----------------HHHH-
Confidence            56799999985    69999999999999999864 6999999865    677776432                2455 


Q ss_pred             HHHhcCCCcEEEEE---CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhh---------------hhccc
Q 004918           92 NLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------RLPRL  153 (724)
Q Consensus        92 ~~l~~~~kp~Iaav---~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~---------------~l~r~  153 (724)
                      +.|..+++|||++|   +|.|.|+|+.|+++||+++|+++++|+.+++..+. |+.|.+.               .+++.
T Consensus        61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~  139 (230)
T 3viv_A           61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE  139 (230)
T ss_dssp             HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            66889999999999   99999999999999999999999999999997533 5555431               36677


Q ss_pred             ccH--HHHHHHHHcCCCCCHHHHHHCCCcceecCc
Q 004918          154 VGL--SKAIEMMLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       154 ~G~--~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      .|.  ..+.+++.++..++|+||+++||||+|++.
T Consensus       140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            785  789999999999999999999999999964

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.72  E-value=2.3e-17  Score=170.71  Aligned_cols=211  Identities=10%  Similarity=0.026  Sum_probs=154.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      +||+|||+|.||..+|..|++.|++ |++||++++++++..+.+                       .+..++++ +.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence            4899999999999999999999999 999999999876643210                       12334455 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC-----CCCCeeeEecC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA-----HVMPLLEIVRT  461 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~-----~~~~lveii~~  461 (724)
                      +||+||+|+|++  ...++++++.+.++++++|++++++.+.+.+...+..   .-..|+++|.     ..++.+.++- 
T Consensus        68 ~~Dvvi~av~~~--~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~v-  141 (266)
T 3d1l_A           68 YAKLYIVSLKDS--AFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPH---YGVFYPMQTFSKQREVDFKEIPFFI-  141 (266)
T ss_dssp             CCSEEEECCCHH--HHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSS---EEEEEECCCC---CCCCCTTCCEEE-
T ss_pred             CCCEEEEecCHH--HHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHh---ccCcCCceecCCCchhhcCCCeEEE-
Confidence            999999999944  4488889998888899999999999988776555433   2236776652     1223333332 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--Cch-----hhhhhh--hHHHHHHHHHHHcCCCHHHHHHHH-Hh------c
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TGF-----AVNRAF--FPYSQSARLLVSLGVDVFRIDSAI-RS------F  525 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--pG~-----i~nRl~--~~~~~Ea~~l~~~Gv~~~~ID~a~-~~------~  525 (724)
                      ..++++.++.++++++.+|+.++++++.  +++     ++|++.  ...+.|++. .+.|++++++..++ ..      .
T Consensus       142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~  220 (266)
T 3d1l_A          142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL  220 (266)
T ss_dssp             EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            2458999999999999999999999754  456     677775  344456633 46699888875544 21      1


Q ss_pred             ---CCCccHHHHHHhhchHHHHHHHHH
Q 004918          526 ---GLPIGPFQLLDLAGYGVAAATSKE  549 (724)
Q Consensus       526 ---g~~~Gp~~~~D~~Gld~~~~~~~~  549 (724)
                         +.++||+...|..|++.....++.
T Consensus       221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          221 EPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence               346799999999999987776643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.70  E-value=1.1e-16  Score=163.77  Aligned_cols=188  Identities=16%  Similarity=0.175  Sum_probs=143.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      +||+|||+|.||.+++..|+++|+    +|++|||+++++++..+..                       .+..+++. +
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChHH
Confidence            689999999999999999999998    9999999999877653211                       12334444 5


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCC-eeeEecCC
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTE  462 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveii~~~  462 (724)
                      .+++||+||+|||  ++..+++++++.+.++++++|+|.++++++..+...+....++++.||+.|..... ...+++++
T Consensus        60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~  137 (247)
T 3gt0_A           60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE  137 (247)
T ss_dssp             HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred             HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence            6788999999997  77788999999998999999999999999998888877777899999999998887 56777888


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhhh-hhhhHHHHHHHHH--HHcCCCHHHHHHHH
Q 004918          463 RTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN-RAFFPYSQSARLL--VSLGVDVFRIDSAI  522 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d~p-----G~i~n-Rl~~~~~~Ea~~l--~~~Gv~~~~ID~a~  522 (724)
                      .++++.++.++++++.+|+ ++++.+..     +.... ..+..++.|++..  .+.|+++++..+++
T Consensus       138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~  204 (247)
T 3gt0_A          138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFA  204 (247)
T ss_dssp             TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            8999999999999999998 55554311     11100 1122233455543  46699998888777

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.69  E-value=4.3e-16  Score=164.62  Aligned_cols=166  Identities=15%  Similarity=0.165  Sum_probs=129.7

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      +.++||+|||+|.||.++|..|.++|+  +|++||++++.++.+.           +.|.++           ..+++. 
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~   88 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIA   88 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHH
Confidence            346899999999999999999999999  9999999998876643           223211           224455 


Q ss_pred             c-CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCC--------
Q 004918          383 S-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------  451 (724)
Q Consensus       383 ~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~--------  451 (724)
                      + .+++||+||+|||  .....++++++.+.++++++|++.+|+..  +..+...+.  .+|++.||+.++.        
T Consensus        89 ~~~~~~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~  164 (314)
T 3ggo_A           89 KVEDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSL  164 (314)
T ss_dssp             GGGGGCCSEEEECSC--GGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCC
T ss_pred             HHhhccCCEEEEeCC--HHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhh
Confidence            4 6899999999999  55577899999999999999988776643  345555443  2899999987653        


Q ss_pred             ----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhh
Q 004918          452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRA  497 (724)
Q Consensus       452 ----~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~pG~i~nRl  497 (724)
                          .+..+.+++++.++++.++.++++++.+|+.+++++ +....++..+
T Consensus       165 ~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~  215 (314)
T 3ggo_A          165 DNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVV  215 (314)
T ss_dssp             TTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence                356788888989999999999999999999999884 4455555443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.67  E-value=1.2e-16  Score=167.41  Aligned_cols=187  Identities=17%  Similarity=0.173  Sum_probs=132.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |+||+|||+|.||.+||.+|+++||+|++|||++++++...           +.|             ....++. +.++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~a~s~~e~~~   58 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAG-------------ASAARSARDAVQ   58 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEECSSHHHHHT
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcC-------------CEEcCCHHHHHh
Confidence            68999999999999999999999999999999999877643           222             2233444 6678


Q ss_pred             CCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCC--------
Q 004918          387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM--------  453 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~--------  453 (724)
                      +||+||.|+|.+.++...++.  .+.+.++++++|+. +|+.+++   ++++.+...    |.+|.+.|..+        
T Consensus        59 ~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~G  133 (300)
T 3obb_A           59 GADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAAG  133 (300)
T ss_dssp             TCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHHT
T ss_pred             cCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHhC
Confidence            999999999976666554443  26677788888875 4444443   344444322    56776555322        


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cc---hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R  523 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG---~i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-~  523 (724)
                      .+.-++.|   +++++++++++++.+|+.++++++. .|   .++|.++.    ..+.|++.+.+. |++++.+-+++ .
T Consensus       134 ~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~  210 (300)
T 3obb_A          134 TLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRR  210 (300)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred             CEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            34445555   6999999999999999999999863 12   24455432    334599988876 89999998888 4


Q ss_pred             hcC
Q 004918          524 SFG  526 (724)
Q Consensus       524 ~~g  526 (724)
                      +.+
T Consensus       211 ~~~  213 (300)
T 3obb_A          211 SSG  213 (300)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.65  E-value=1.7e-16  Score=167.81  Aligned_cols=191  Identities=12%  Similarity=0.096  Sum_probs=133.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      ..|+||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..+++. +.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~~~~~~   74 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------HG-------------ASVCESPAEV   74 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TT-------------CEECSSHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeEcCCHHHH
Confidence            45789999999999999999999999999999999998766431           12             2334454 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC----CCCCe
Q 004918          385 FKDVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPL  455 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~----~~~~l  455 (724)
                      +++||+||+|||++..++..++  .++.+.++++++|++.++..+.+  .+...+. ...+|+. |+....    ..+++
T Consensus        75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l  153 (310)
T 3doj_A           75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQL  153 (310)
T ss_dssp             HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCE
T ss_pred             HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCe
Confidence            7899999999997666654443  66778888998887644433322  2333322 2223333 222110    12234


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS  524 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~  524 (724)
                      +.++.+   ++++++.++++++.+|+.++++++ +|      ++.|.++   ...++|++.+.+. |++++++..++ .+
T Consensus       154 ~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~  229 (310)
T 3doj_A          154 IILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLG  229 (310)
T ss_dssp             EEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             EEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            455555   589999999999999999999986 55      4455553   3557899998876 89999999998 54


Q ss_pred             c
Q 004918          525 F  525 (724)
Q Consensus       525 ~  525 (724)
                      .
T Consensus       230 ~  230 (310)
T 3doj_A          230 A  230 (310)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.64  E-value=1.1e-16  Score=167.79  Aligned_cols=185  Identities=14%  Similarity=0.093  Sum_probs=126.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.+||.+|+++||+|++|||++++++..           .+.|             ....++. +.+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLG-------------ATVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTT-------------CEECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcC-------------CeEeCCHHHHHhc
Confidence            589999999999999999999999999999999876542           2222             2233444 67899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCC--------Cee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM--------PLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~--------~lv  456 (724)
                      ||+||.|+|.+..+...+...+.+.+.++.+++.. |+..+.   +++..+...    |.+|.+.|..+        .+.
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~-sT~~p~~~~~~~~~~~~~----g~~~ldapVsGg~~~a~~g~l~  136 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSM-STISPETSRQLAQVHEWY----GAHYVGAPIFARPEAVRAKVGN  136 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEEC-SCCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTCCE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEEC-CCCChHHHHHHHHHHHhc----CCceecCCcCCCccccccccce
Confidence            99999999977777666667788888888888754 344443   333333221    45555444222        223


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG-----~i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  525 (724)
                      -++.|   +++++++++++++.+|+.++++++.+|     .++|.++    ...+.|++.+.+. |++++++-.++ .+.
T Consensus       137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~  213 (297)
T 4gbj_A          137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTL  213 (297)
T ss_dssp             EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred             eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence            33333   689999999999999999999987665     2445443    2445699988866 99999988888 444

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.64  E-value=6e-16  Score=163.13  Aligned_cols=191  Identities=12%  Similarity=0.122  Sum_probs=132.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+           .|            ....+++. +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------~~~~~~~~~e~~~   63 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG------------ACGAAASAREFAG   63 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT------------CSEEESSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC------------CccccCCHHHHHh
Confidence            468999999999999999999999999999999998776432           12            11213444 6679


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH--HHhcccCC-CCCEEEEecCCCC----CCCCeee
Q 004918          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFSPA----HVMPLLE  457 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~-~~r~ig~h~~~p~----~~~~lve  457 (724)
                      +||+||+|||++..++..++  +++.+.++++++|++.++..+.+  .+...+.. ...|+. |+....    ..+.+..
T Consensus        64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  142 (303)
T 3g0o_A           64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTV  142 (303)
T ss_dssp             TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEE
Confidence            99999999996655554443  66778888999887544433322  33333322 223444 332111    1123444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  525 (724)
                      ++.+   ++++++.++++++.+|+.++++++.+|      ++.|.+.   ...++|++.+.+. |++++++..++ .+.
T Consensus       143 ~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~  218 (303)
T 3g0o_A          143 MASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAA  218 (303)
T ss_dssp             EEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             EeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            5544   689999999999999999999987555      2334432   3557899988876 89999999998 543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=2.7e-16  Score=166.38  Aligned_cols=188  Identities=14%  Similarity=0.086  Sum_probs=125.7

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC--HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      +.++||+|||+|.||.+||..|+++|+ +|++||++  ++..+.+.           +.|             +..+++.
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~g-------------~~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------ELG-------------VSCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HTT-------------CEECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HCC-------------CEEeCCH
Confidence            346799999999999999999999999 99999997  45544321           112             3334454


Q ss_pred             -cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-C--CCCEEEEecCCCC--CCCC
Q 004918          383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-S--QDRIIGAHFFSPA--HVMP  454 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~--~~r~ig~h~~~p~--~~~~  454 (724)
                       +.+++||+||+|||++...  +++.++.+.++++++|++.+|..+.+  .+...+. .  ..+|+....+.|+  ..+.
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~  155 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR  155 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence             5678999999999976654  46788999999999988766554443  2222221 1  2233332112111  1225


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch-----hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R  523 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~-----i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-~  523 (724)
                      +..++.++.+     +.++++++.+|+.++++++.+|.     ++|..+.    ..++|++.+.+. |++++-++ ++ .
T Consensus       156 l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~~  229 (312)
T 3qsg_A          156 VPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLDA  229 (312)
T ss_dssp             SEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHH
T ss_pred             EEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHh
Confidence            6667777532     88999999999999999875663     3344433    667899988876 89885444 45 4


Q ss_pred             hc
Q 004918          524 SF  525 (724)
Q Consensus       524 ~~  525 (724)
                      ++
T Consensus       230 ~~  231 (312)
T 3qsg_A          230 SF  231 (312)
T ss_dssp             HS
T ss_pred             cC
Confidence            43

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.63  E-value=6.5e-16  Score=162.25  Aligned_cols=184  Identities=18%  Similarity=0.169  Sum_probs=130.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .             .+..++++ +.++ 
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~-   70 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A-------------GATLADSVADVAA-   70 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T-------------TCEECSSHHHHTT-
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCEEcCCHHHHHh-
Confidence            58999999999999999999999999999999998766432           1             23445565 4466 


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccCC-CCCEEEEecCCCC---CCCCeeeEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFSPA---HVMPLLEIVRT  461 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~-~~r~ig~h~~~p~---~~~~lveii~~  461 (724)
                      ||+||+|||++..+ +++++++.+.++++++|++.++..+.+  .+...+.. ..+|+....+.++   ..+.+..++.+
T Consensus        71 aDvvi~~vp~~~~~-~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg  149 (296)
T 3qha_A           71 ADLIHITVLDDAQV-REVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGA  149 (296)
T ss_dssp             SSEEEECCSSHHHH-HHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEEC
T ss_pred             CCEEEEECCChHHH-HHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecC
Confidence            99999999965554 456688888899999887654443332  33333322 2233332111111   12344555555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHH------HHHH
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRI------DSAI  522 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl~---~~~~~Ea~~l~~~-Gv~~~~I------D~a~  522 (724)
                         +++++++++++++.+|+.++++++ +|      ++.|.+.   ...++|++.+.+. |++++++      ..++
T Consensus       150 ---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i  222 (296)
T 3qha_A          150 ---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL  222 (296)
T ss_dssp             ---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence               689999999999999999999976 55      4445443   3457899998876 8999999      7777

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.63  E-value=5.4e-16  Score=162.21  Aligned_cols=187  Identities=14%  Similarity=0.080  Sum_probs=131.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L-------------GAERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhc
Confidence            58999999999999999999999999999999998776432           1             23344555 55788


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCC----CCCCeee
Q 004918          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLE  457 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~----~~~~lve  457 (724)
                      ||+||+|||++..++..++  +++.+.++++++|++. |+.++.   .+...+. ...+|+. |+..+.    ....++.
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  135 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII  135 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence            9999999997666655444  7788889999888765 444433   2333322 2223444 332211    1123444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc--h---hhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG--F---AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI-RSF  525 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG--~---i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  525 (724)
                      ++.+   ++++++.++++++.+|+.++++++ +|  .   ++|.++    ...++|++.+.+. |++++++..++ .+.
T Consensus       136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~  210 (287)
T 3pef_A          136 LAAG---DRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA  210 (287)
T ss_dssp             EEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EEeC---CHHHHHHHHHHHHHhCCCeEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            5554   689999999999999999999876 44  2   233333    3467899998876 89999999998 543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.62  E-value=1.8e-16  Score=165.88  Aligned_cols=186  Identities=13%  Similarity=0.125  Sum_probs=129.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |+||+|||+|.||.++|..|+++|++|++||+++++++...+.                        .+..+++. +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL------------------------GARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH------------------------TCEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC------------------------CCeecCCHHHHHH
Confidence            4689999999999999999999999999999999987764321                        13334455 5578


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCCCCC--------C
Q 004918          387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM--------P  454 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~--------~  454 (724)
                      +||+||+|||++..++..++  +++.+.++++++|++.++..+.+  .+...+...    |.||+++|..+        .
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~  132 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTAR----GGRFLEAPVSGTKKPAEDGT  132 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTC
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEECCccCCHHHHhcCC
Confidence            99999999996656554443  66778888888887544433322  233332211    23443333221        2


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-R  523 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~  523 (724)
                      +..++.+   ++++++.++++++.+|+.++++++ +|      ++.|.+.   ...++|++.+.+. |++++++..++ .
T Consensus       133 l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  208 (287)
T 3pdu_A          133 LIILAAG---DQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA  208 (287)
T ss_dssp             EEEEEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             EEEEEeC---CHHHHHHHHHHHHHhCCCEEEcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            3334443   689999999999999999999976 44      2335443   3456899988866 89999999998 5


Q ss_pred             hc
Q 004918          524 SF  525 (724)
Q Consensus       524 ~~  525 (724)
                      +.
T Consensus       209 ~~  210 (287)
T 3pdu_A          209 GA  210 (287)
T ss_dssp             ST
T ss_pred             cc
Confidence            43

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.62  E-value=9.6e-16  Score=159.30  Aligned_cols=210  Identities=10%  Similarity=-0.035  Sum_probs=138.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      .||+|||+|.||.+++..|+++ ++| .+||++++.+++..+.                      .+.  .++++ +.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------------------~g~--~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------------------YGG--KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------------------TCC--CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------------------cCC--ccCCHHHHHh
Confidence            4799999999999999999988 999 5999999887664321                      011  23444 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEec----CCCCCC-CCeeeEecC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF----FSPAHV-MPLLEIVRT  461 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~----~~p~~~-~~lveii~~  461 (724)
                      +||+||+|+|++.  ..+++.++.   .++++|++.+++.+.+.+...     .+.+.|+    .+++.. ....++...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            9999999999554  567776654   577888766656677655433     4567774    332221 112222222


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--C------chhhhhhhhHHHHHHHHHHH-cCCCH----------HHHHHHH
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--T------GFAVNRAFFPYSQSARLLVS-LGVDV----------FRIDSAI  522 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--p------G~i~nRl~~~~~~Ea~~l~~-~Gv~~----------~~ID~a~  522 (724)
                      -..+++.++.++++++.+|+.++++++.  +      ++..| ++..++.++..+.. .|++.          ..++.++
T Consensus       128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~  206 (276)
T 2i76_A          128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIK  206 (276)
T ss_dssp             ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            2235667999999999999999888642  2      34444 55667788877777 58854          3566666


Q ss_pred             -Hh-cCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004918          523 -RS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF  554 (724)
Q Consensus       523 -~~-~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~  554 (724)
                       .+ .+.++||++..|..+++.....++.+++++
T Consensus       207 ~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          207 KMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             HSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             hcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence             33 556789999999999999999998875544

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.60  E-value=2.4e-15  Score=159.68  Aligned_cols=185  Identities=15%  Similarity=0.150  Sum_probs=129.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .++||+|||+|.||.++|..|+++|++|++||+++++++...+           .|             +..++++ +.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~~~~e~~   85 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------LG-------------ATIHEQARAAA   85 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CEEESSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------CC-------------CEeeCCHHHHH
Confidence            3569999999999999999999999999999999998766421           12             3344555 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH--HHhcccCCCCCEEEEecCCCCC--------CC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAH--------VM  453 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~--------~~  453 (724)
                      ++||+||+|||++..++ .++.  ++.+.++++++|++.+++.+.+  .+...+...    |.||++.|.        .+
T Consensus        86 ~~aDvVi~~vp~~~~~~-~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g  160 (320)
T 4dll_A           86 RDADIVVSMLENGAVVQ-DVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL----GIAHLDTPVSGGTVGAEQG  160 (320)
T ss_dssp             TTCSEEEECCSSHHHHH-HHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEECHHHHHHHT
T ss_pred             hcCCEEEEECCCHHHHH-HHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc----CCEEEeCCCcCCHhHHhcC
Confidence            89999999999665554 4444  6777788888887554443322  233333211    234433221        22


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-  522 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-  522 (724)
                      ++..++.+   ++++++.++++++.+ +.++++++ +|      ++.|-+.   ...++|++.+.+. |++++++..++ 
T Consensus       161 ~l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~  235 (320)
T 4dll_A          161 TLVIMAGG---KPADFERSLPLLKVF-GRATHVGP-HGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAIT  235 (320)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHH-EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHT
T ss_pred             CeeEEeCC---CHHHHHHHHHHHHhc-CCEEEeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            34555555   689999999999999 88888876 34      2334332   3467899998876 89999999998 


Q ss_pred             Hhc
Q 004918          523 RSF  525 (724)
Q Consensus       523 ~~~  525 (724)
                      .+.
T Consensus       236 ~~~  238 (320)
T 4dll_A          236 GGF  238 (320)
T ss_dssp             TST
T ss_pred             ccc
Confidence            544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.59  E-value=1.2e-14  Score=151.95  Aligned_cols=189  Identities=13%  Similarity=0.040  Sum_probs=134.4

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      .|+||+|||+ |.||.++|..|+++|++|++||++++.++.+.+           .|             +..++..+.+
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~   65 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWI   65 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGG
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHh
Confidence            3579999999 999999999999999999999999988765421           12             1223333667


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCC--------CCCe--
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL--  455 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~--------~~~l--  455 (724)
                      ++||+||+|+|  .....++++++.+.++++++|++.+++.+++.+.. .....++++.||+.|..        ....  
T Consensus        66 ~~aDvVi~av~--~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l  142 (286)
T 3c24_A           66 DEADVVVLALP--DNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYH  142 (286)
T ss_dssp             GTCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSS
T ss_pred             cCCCEEEEcCC--chHHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCcc
Confidence            89999999999  45578899999999999999988666666665554 33335799999988765        2222  


Q ss_pred             ------eeEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCchh----hhhhhhHHH---HHHHHHH-Hc-CCCHH
Q 004918          456 ------LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFA----VNRAFFPYS---QSARLLV-SL-GVDVF  516 (724)
Q Consensus       456 ------veii~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~pG~i----~nRl~~~~~---~Ea~~l~-~~-Gv~~~  516 (724)
                            ..++.+..++++.++.++++++.+|+   .++++++ ..+.+    .|-...+++   .|++... .. |++++
T Consensus       143 ~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~  222 (286)
T 3c24_A          143 GGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQ  222 (286)
T ss_dssp             SSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             cccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence                  23333334688999999999999999   7888853 22222    343433333   3544333 33 88887


Q ss_pred             HHHHHH
Q 004918          517 RIDSAI  522 (724)
Q Consensus       517 ~ID~a~  522 (724)
                      ++-.++
T Consensus       223 ~~~~~~  228 (286)
T 3c24_A          223 AALDFM  228 (286)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776665

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.59  E-value=2.2e-15  Score=150.19  Aligned_cols=159  Identities=9%  Similarity=0.014  Sum_probs=124.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +.+||+|||+|.||+++|..|.++|++|++||+.                                          ++++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~   42 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIR   42 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhc
Confidence            3468999999999999999999999999999983                                          1245


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCCH
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  466 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~~  466 (724)
                      +||  |.|||.+  ...+++.++.+.++++++|++.+++.+...+........+|++.||....     ..++...  ++
T Consensus        43 ~aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a~--d~  111 (232)
T 3dfu_A           43 DFE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASAL--DE  111 (232)
T ss_dssp             GCS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEES--SH
T ss_pred             cCC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeCC--CH
Confidence            788  8899955  56788899999999999998766566655454444556789999986432     2233322  78


Q ss_pred             HHHHHHHHHHHHcCCeeEEEc--CCCch----hhhhhhhHHHHHHHHHH---HcCC-CHHHH
Q 004918          467 QVILDLMTVGKIIKKVPVVVG--NCTGF----AVNRAFFPYSQSARLLV---SLGV-DVFRI  518 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~--d~pG~----i~nRl~~~~~~Ea~~l~---~~Gv-~~~~I  518 (724)
                      +.++.++++++.+|.+++.+.  +.++|    ..++.+.++.++|..++   ++|+ +++|+
T Consensus       112 ~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d~  173 (232)
T 3dfu_A          112 LGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSDI  173 (232)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Confidence            899999999999999999984  45666    44677788999999999   8897 88883

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.56  E-value=2.6e-14  Score=151.88  Aligned_cols=188  Identities=13%  Similarity=0.064  Sum_probs=135.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      ++||+|||+|.||.+||..|+++|    ++|++|||+++  +++.+.+           .|             +..+++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~-----------~G-------------~~~~~~   77 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK-----------MG-------------VKLTPH   77 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH-----------HT-------------CEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH-----------cC-------------CEEeCC
Confidence            458999999999999999999999    89999999986  5554321           12             223334


Q ss_pred             c-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCC---CCCEEEEecCCCCCCCCeee
Q 004918          382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS---QDRIIGAHFFSPAHVMPLLE  457 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~---~~r~ig~h~~~p~~~~~lve  457 (724)
                      . +.+++||+||+|||  ++...+++.++.+.++++++|++.++++++..+...+..   ..++++.|+..|........
T Consensus        78 ~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~  155 (322)
T 2izz_A           78 NKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGAT  155 (322)
T ss_dssp             HHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEE
T ss_pred             hHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeE
Confidence            3 56788999999999  677888999999989889999998888888776665532   45799999988887766555


Q ss_pred             Ee-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc----h--hhhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004918          458 IV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----F--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI  522 (724)
Q Consensus       458 ii-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG----~--i~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  522 (724)
                      ++ .++.++++.++.++++++.+|..+++..+.-.    .  ..+.+++ .+.|++.  ..+.|+++++.-.++
T Consensus       156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~  228 (322)
T 2izz_A          156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLG  228 (322)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            55 57777899999999999999986554322110    0  1122222 2234333  345588887766655

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.55  E-value=1.5e-15  Score=157.92  Aligned_cols=93  Identities=24%  Similarity=0.314  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC-CCCCCHHH
Q 004918          622 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFL  700 (724)
Q Consensus       622 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l  700 (724)
                      +++||++.++++||+.++++|+  ++++||.++..|+|+|++..|||+++|.+|+|+++++++.+++.+++ +|.|+++|
T Consensus       174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~l  251 (293)
T 1zej_A          174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWL  251 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence            8999999999999999999998  79999999999999988788999999999999999999999999887 89999999


Q ss_pred             HHHH-------HcCCCCCCCCCC
Q 004918          701 EERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       701 ~~~~-------k~g~gfy~~~~~  716 (724)
                      ++|+       |+|+|||+|++.
T Consensus       252 ~~~v~~G~lG~Ktg~Gfy~y~~~  274 (293)
T 1zej_A          252 QEKIKKGEVGVKAGKGIYEYGPK  274 (293)
T ss_dssp             HHHHHTTCCBGGGTBSSSBCCTT
T ss_pred             HHHHHCCCCccccCCEeeecCcc
Confidence            9999       789999999553

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.54  E-value=8.7e-15  Score=154.14  Aligned_cols=90  Identities=27%  Similarity=0.372  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhh-CC-CCCCC
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLY-GN-FFKPS  697 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~-~~-~~~p~  697 (724)
                      ++++.||++.+++||+++++++|++ ++++||.++..|+|||+   |||+++|.+|+|+++++++.+++.+ ++ +|.|+
T Consensus       203 ~g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~---GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  278 (302)
T 1f0y_A          203 PGFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPS  278 (302)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcC
Confidence            4689999999999999999999999 99999999999999996   9999999999999999999999888 76 59999


Q ss_pred             HHHHHHH-------HcCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAP  713 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~  713 (724)
                      ++|++|+       |+|+|||+|
T Consensus       279 ~~l~~~~~~g~~G~k~g~Gfy~y  301 (302)
T 1f0y_A          279 PSLNKLVAENKFGKKTGEGFYKY  301 (302)
T ss_dssp             HHHHHHHHTTCCBTTTTBSSSBC
T ss_pred             HHHHHHHHcCCCccccCcEeeeC
Confidence            9999999       789999999

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.53  E-value=2.7e-14  Score=159.19  Aligned_cols=205  Identities=13%  Similarity=0.079  Sum_probs=143.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH--hhcCcccccCc-cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~  384 (724)
                      -.||+|||+|.||.++|..|+++|++|++||+++++++...+....    ....| + .+....  ..+++.+++++ ++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~----i~e~g-l-~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVP----IHEPG-L-KEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS----SCCTT-H-HHHHHHHHHTTCEEEECCHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCC----cCCCC-H-HHHHHHhcccCCEEEECCHHHH
Confidence            3689999999999999999999999999999999988875431000    00000 0 000110  12467888888 57


Q ss_pred             cCCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccC----CC---CCEEEEec
Q 004918          385 FKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQ---DRIIGAHF  446 (724)
Q Consensus       385 ~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~----~~---~r~ig~h~  446 (724)
                      +++||+||+|||.        |.....++++++.++++++++|++ .|++++.   .+...+.    .+   ..+  .+.
T Consensus        82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~  158 (478)
T 2y0c_A           82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF--SVV  158 (478)
T ss_dssp             HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE--EEE
Confidence            8999999999997        448889999999999999998864 4566542   2222111    11   222  245


Q ss_pred             CCCCCCCCee---------eEecCCCCCH----HHHHHHHHHHHHcCC--eeEEEcC-----CCchhhhhhh---hHHHH
Q 004918          447 FSPAHVMPLL---------EIVRTERTSA----QVILDLMTVGKIIKK--VPVVVGN-----CTGFAVNRAF---FPYSQ  503 (724)
Q Consensus       447 ~~p~~~~~lv---------eii~~~~t~~----e~~~~~~~l~~~lGk--~~v~v~d-----~pG~i~nRl~---~~~~~  503 (724)
                      ++|....+..         .++.|.. ++    ++.+.+.++++.+++  .++++.+     ..+++.|.++   .+++|
T Consensus       159 ~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~n  237 (478)
T 2y0c_A          159 SNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMN  237 (478)
T ss_dssp             ECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5676665544         3555543 34    789999999998875  5677654     4457778765   57889


Q ss_pred             HHHHHHHc-CCCHHHHHHHH
Q 004918          504 SARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       504 Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      |+..+.+. |++++++..++
T Consensus       238 E~~~la~~~Gid~~~v~~~i  257 (478)
T 2y0c_A          238 ELANLADRFGADIEAVRRGI  257 (478)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHH
Confidence            99999877 89999999887

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.52  E-value=1.7e-13  Score=145.02  Aligned_cols=193  Identities=12%  Similarity=0.065  Sum_probs=127.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  385 (724)
                      ++||+|||+|.||.++|..|+++| ++|++||++++..++..+..+    ...+.|             + .+ +..+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~----~~~~~g-------------~-~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRA----RAAELG-------------V-EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHH----HHHHTT-------------C-EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHH----HHHHCC-------------C-CCCCHHHHH
Confidence            468999999999999999999999 999999999842211111111    111222             1 23 334678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCC--CCCCCeeeEec
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP--AHVMPLLEIVR  460 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p--~~~~~lveii~  460 (724)
                      ++||+||+|||.+...  +.+.++.+.++++++|++.++..+.+  .+...+. ...+|+....+.|  ...+.+..++.
T Consensus        86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg  163 (317)
T 4ezb_A           86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA  163 (317)
T ss_dssp             GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred             hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence            9999999999965544  45588888899999887655443332  3333332 2234544322332  23445566666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch-----hhhhh----hhHHHHHHHHHHHc-CCCHHHHHHHHHhc
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRA----FFPYSQSARLLVSL-GVDVFRIDSAIRSF  525 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~-----i~nRl----~~~~~~Ea~~l~~~-Gv~~~~ID~a~~~~  525 (724)
                      ++.   +  +.++++++.+|+.++++++.+|.     ++|.+    ..+.++|++.+.+. |++++.++.+..+.
T Consensus       164 g~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~  233 (317)
T 4ezb_A          164 GRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF  233 (317)
T ss_dssp             STT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             CCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            653   2  88999999999999999876662     33332    35677899998876 89986666655443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.51  E-value=3.2e-14  Score=151.14  Aligned_cols=160  Identities=14%  Similarity=0.153  Sum_probs=118.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .++||+|||+|.||++||..|.++|++|++||++++.++.+.+           .|             +..+++. +.+
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~   62 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATL   62 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHH
Confidence            4678999999999999999999999999999999988776431           22             1223343 233


Q ss_pred             ----CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCC-C------
Q 004918          386 ----KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------  452 (724)
Q Consensus       386 ----~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~-~------  452 (724)
                          ++||+||+|||  +....++++++.+. +++++|++.+|+..  +..+..... ..+|++.||...+. .      
T Consensus        63 ~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~  138 (341)
T 3ktd_A           63 QRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM  138 (341)
T ss_dssp             HHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred             HhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence                35799999999  67788999999887 78888876555432  234444332 46899999987653 1      


Q ss_pred             -----CCeeeEecCCCCCHH--------HHHHHHHHHHHcCCeeEEEc-CCCchhh
Q 004918          453 -----MPLLEIVRTERTSAQ--------VILDLMTVGKIIKKVPVVVG-NCTGFAV  494 (724)
Q Consensus       453 -----~~lveii~~~~t~~e--------~~~~~~~l~~~lGk~~v~v~-d~pG~i~  494 (724)
                           +..+.+++++.++++        .++.++++++.+|..++++. +....++
T Consensus       139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~  194 (341)
T 3ktd_A          139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAA  194 (341)
T ss_dssp             SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred             hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence                 234667788888888        99999999999999999884 3344333

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.51  E-value=2.3e-13  Score=140.18  Aligned_cols=148  Identities=12%  Similarity=0.093  Sum_probs=115.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ||+|||+|.||.++|..|+++| ++|++||+++++++...+.          .|             +..+++. +.+ +
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-~   57 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-S   57 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-T
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-c
Confidence            7999999999999999999999 9999999999887764321          01             2233444 567 9


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCC-eeeEecCCCCCH
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTSA  466 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveii~~~~t~~  466 (724)
                      ||+||+|+|  .....+++.++.+  + +++|++.++++++..+...+....+++..++..|..... ...++++..+++
T Consensus        58 ~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~  132 (263)
T 1yqg_A           58 DDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (263)
T ss_dssp             TSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             CCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCH
Confidence            999999999  6666777776654  4 888989889999888877776555788886555555544 345677777899


Q ss_pred             HHHHHHHHHHHHcCCeeEEEc
Q 004918          467 QVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      +.++.+.++++.+|+.+ +++
T Consensus       133 ~~~~~~~~l~~~~g~~~-~~~  152 (263)
T 1yqg_A          133 TDRRIADRIMKSVGLTV-WLD  152 (263)
T ss_dssp             HHHHHHHHHHHTTEEEE-ECS
T ss_pred             HHHHHHHHHHHhCCCEE-EeC
Confidence            99999999999999876 666

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.51  E-value=4e-14  Score=149.28  Aligned_cols=187  Identities=11%  Similarity=0.038  Sum_probs=128.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .++||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .|             +...++. +.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~   63 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAAL   63 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHH
Confidence            3578999999999999999999999999999999998776432           12             2233444 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCC-CCC--CCeee
Q 004918          386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP-AHV--MPLLE  457 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p-~~~--~~lve  457 (724)
                      ++||+||+|+|++..++ .++.  .+... .++++|++.++..+..  .+...+. ...+|+....+.+ +..  ..+..
T Consensus        64 ~~aDvVi~~vp~~~~~~-~v~~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i  141 (306)
T 3l6d_A           64 SASPATIFVLLDNHATH-EVLGMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS  141 (306)
T ss_dssp             HHSSEEEECCSSHHHHH-HHHTSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred             hcCCEEEEEeCCHHHHH-HHhcccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence            88999999999665554 4444  56554 5777776544433322  3333332 2334555432221 111  12343


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEE--cC--CCchhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVV--GN--CTGFAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v--~d--~pG~i~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      ++.+   +++++++++++++.+|++++++  ++  ..|..++-++   ...++|++.+.+. |++++++..++
T Consensus       142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~  211 (306)
T 3l6d_A          142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLL  211 (306)
T ss_dssp             EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4444   6999999999999998899999  75  4567776332   3556799988866 89999998888

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.51  E-value=5.7e-14  Score=155.30  Aligned_cols=203  Identities=16%  Similarity=0.156  Sum_probs=135.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCCHH----HHHHHHHHH------HHHHHhhHhcCCCCHHHHHHhhc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSE----YLLKGIKTI------EANVRGLVTRGKLTQDKANNALK  374 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~----~~~~~~~~i------~~~~~~~~~~g~~~~~~~~~~~~  374 (724)
                      +++||+|||+|.||.++|.+|+++ |+ +|++||++++    +++...+..      +..++.++++        ....+
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence            467999999999999999999999 99 9999999999    777643210      0000000000        00136


Q ss_pred             CcccccCccCcCCCCEEEEcccCCh----------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhc-----ccC
Q 004918          375 MLKGVLDYSEFKDVDMVIEAVIESV----------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-----KTS  436 (724)
Q Consensus       375 ~i~~~~~~~~~~~aDlVIeav~e~~----------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~-----~~~  436 (724)
                      ++.++++.+++++||+||+|||++.          .......+.+.++++++++|+ +.||+++.   ++..     ...
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcC
Confidence            7888888888999999999998753          345666788999999999876 44555543   2221     111


Q ss_pred             C--CCCEEEEecCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcCCCc----hhhhhhh--
Q 004918          437 S--QDRIIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKII-KKVPVVVGNCTG----FAVNRAF--  498 (724)
Q Consensus       437 ~--~~r~ig~h~~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d~pG----~i~nRl~--  498 (724)
                      .  ...|.-+  ++|....+.-         -|+.|.  +++..+.++++++.+ ++.++++++...    .++|.++  
T Consensus       168 ~~~~~d~~v~--~~Pe~~~~G~a~~~~~~~~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a  243 (478)
T 3g79_A          168 LKAGEDFALA--HAPERVMVGRLLKNIREHDRIVGGI--DEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD  243 (478)
T ss_dssp             CCBTTTBEEE--ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHH
T ss_pred             CCcCCceeEE--eCCccCCccchhhhhcCCcEEEEeC--CHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHH
Confidence            1  1112111  2444333211         245443  688889999999999 888888865221    2333332  


Q ss_pred             --hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          499 --FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       499 --~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                        .+++||+..+.+. |+++.++-.++
T Consensus       244 ~~Ia~~nE~~~l~e~~GiD~~~v~~~~  270 (478)
T 3g79_A          244 LQIAAINQLALYCEAMGINVYDVRTGV  270 (478)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence              4778999988876 99999988888

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.50  E-value=2.7e-14  Score=151.42  Aligned_cols=187  Identities=16%  Similarity=0.143  Sum_probs=133.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .++||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +...++. +.+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   84 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVV   84 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHH
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHH
Confidence            3578999999999999999999999999999999987665321           12             1223344 557


Q ss_pred             CCCCEEEEcccCChHHHHHHHHH---HHhhCCCCcEEEecCCCCC--HHHHhcccC-CCCCEEEEecCCCC---CCCCee
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (724)
                      +++|+||+|+|++..++. ++.+   +.+.+.++++|++.++..+  ..++.+.+. ...++++.++++.+   ..+.++
T Consensus        85 ~~~DvVi~av~~~~~~~~-v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~  163 (316)
T 2uyy_A           85 STCDITFACVSDPKAAKD-LVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLV  163 (316)
T ss_dssp             HHCSEEEECCSSHHHHHH-HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEE
T ss_pred             hcCCEEEEeCCCHHHHHH-HHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEE
Confidence            889999999996665544 4443   3366778888775444332  334555442 45578887765432   334556


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG------~i~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      .++.+   +++.++.+.++++.+|+.++++++ +|      ++.|.+   +..++.|++.+.+. |+++++++.++
T Consensus       164 ~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~-~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~  235 (316)
T 2uyy_A          164 ILAAG---DRGLYEDCSSCFQAMGKTSFFLGE-VGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL  235 (316)
T ss_dssp             EEEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEeCC---CHHHHHHHHHHHHHhcCCEEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            66666   588999999999999999988866 33      455665   45677899988765 89999999888

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.49  E-value=1.4e-13  Score=144.02  Aligned_cols=159  Identities=14%  Similarity=0.104  Sum_probs=119.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      |+++||+|||+|.||.++|..|+++  |++|++||++++.++.+.+           .|...           ..++++ 
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~~-----------~~~~~~~   61 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-----------RGIVD-----------EATADFK   61 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-----------TTSCS-----------EEESCTT
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-----------cCCcc-----------cccCCHH
Confidence            3467999999999999999999988  6899999999988765421           22110           223444 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEEecCCCCC--HHHHhcccCC-CCCEEEEecC------CCCC-
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF------SPAH-  451 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~------~p~~-  451 (724)
                      +.+++||+||+|||  .....+++.++.+. ++++++|++.+++..  ...+...+.. ..++++.||+      .|.. 
T Consensus        62 ~~~~~aDvVilavp--~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a  139 (290)
T 3b1f_A           62 VFAALADVIILAVP--IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA  139 (290)
T ss_dssp             TTGGGCSEEEECSC--HHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred             HhhcCCCEEEEcCC--HHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence            56789999999999  55568899999888 888988875444322  2455555544 5689999987      4432 


Q ss_pred             -----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          452 -----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       452 -----~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                           .+..+.+++...++++.++.+.++++.+|..++++.+
T Consensus       140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                 3455778888888899999999999999999888753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.48  E-value=5.1e-14  Score=150.94  Aligned_cols=174  Identities=10%  Similarity=0.043  Sum_probs=119.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .|             +..++++ +.++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------EG-------------IAGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CEEeCCHHHHHh
Confidence            468999999999999999999999999999999998776431           12             2334444 4456


Q ss_pred             CC---CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeee
Q 004918          387 DV---DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (724)
Q Consensus       387 ~a---DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (724)
                      ++   |+||.|||.+  ...+++.++.+.++++++|++.+++.+.+  .+...+. ...+|+....+.++   ..++  .
T Consensus        78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--~  153 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--C  153 (358)
T ss_dssp             HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--E
T ss_pred             cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--e
Confidence            67   9999999966  56678899999999999998766665443  3333332 22334443222111   1122  2


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcC--------------------CeeEEEcC-CCchhh---hh-hh---hHHHHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIK--------------------KVPVVVGN-CTGFAV---NR-AF---FPYSQSARLLV  509 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lG--------------------k~~v~v~d-~pG~i~---nR-l~---~~~~~Ea~~l~  509 (724)
                      ++.+.  ++++++.++++++.+|                    +.++++++ ..|..+   |. ++   ...+.|++.++
T Consensus       154 im~GG--~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la  231 (358)
T 4e21_A          154 LMIGG--EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL  231 (358)
T ss_dssp             EEEES--CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecC--CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34432  6899999999999999                    56788875 344443   22 22   24456999888


Q ss_pred             Hc
Q 004918          510 SL  511 (724)
Q Consensus       510 ~~  511 (724)
                      +.
T Consensus       232 ~~  233 (358)
T 4e21_A          232 HH  233 (358)
T ss_dssp             HT
T ss_pred             Hh
Confidence            76

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.47  E-value=9.3e-14  Score=144.38  Aligned_cols=156  Identities=17%  Similarity=0.154  Sum_probs=124.0

Q ss_pred             EEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004918           16 AIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (724)
Q Consensus        16 ~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (724)
                      +++..+.. ..|+++..+.+.+.++++.+.++ .+++|+|++.|     |+|+.+....        + .....++ ..+
T Consensus       121 ~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l-~~~~~i~-~al  184 (304)
T 2f9y_B          121 VAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L-MQMAKTS-AAL  184 (304)
T ss_dssp             BEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H-HHHHHHH-HHH
T ss_pred             EEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H-HHHHHHH-HHH
Confidence            33334333 35999999999999999999988 89999999876     8888654310        1 1222333 334


Q ss_pred             ---hcCCCcEEEEECccccchh-HHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCC
Q 004918           95 ---EDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT  170 (724)
Q Consensus        95 ---~~~~kp~Iaav~G~a~GgG-~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~  170 (724)
                         ...++|+|++|+|.|+||| +.++++||++||.++|+|++.           +...+++.+|..      ++++..+
T Consensus       185 ~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~~  247 (304)
T 2f9y_B          185 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQR  247 (304)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTTB
T ss_pred             HHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccCC
Confidence               3459999999999999999 778999999999999999987           345566667743      5789999


Q ss_pred             HHHHHHCCCcceecCcchHHHHHHHHHHHHHccC
Q 004918          171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (724)
Q Consensus       171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (724)
                      |+++.++|+||.|++++++.+.+.+++..++..+
T Consensus       248 Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          248 SEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             HHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999987653

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.47  E-value=1.7e-13  Score=136.23  Aligned_cols=140  Identities=16%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~  106 (724)
                      .++..+.+++.+.|..++++++++.|+|.    ..|.|+++..                ...++ +.|..+++||++.++
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~----InSPGG~v~a----------------g~~I~-~~i~~~~~pV~t~v~  111 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLY----VNTPGGSVSA----------------GLAIV-DTMNFIKADVQTIVM  111 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEE----EEECCBCHHH----------------HHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEE----EECcCCCHHH----------------HHHHH-HHHHhcCCCEEEEEc
Confidence            48899999999999999988777887775    2334444321                22344 668889999999999


Q ss_pred             ccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchh------------------hhhcccccH--HHHHHHHH
Q 004918          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVGL--SKAIEMML  164 (724)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~------------------~~l~r~~G~--~~a~~l~l  164 (724)
                      |.|.++|+.|+++||.  |+|.++++|++++.. |.+|..|..                  ..+++..|.  .++.+++.
T Consensus       112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~  190 (218)
T 1y7o_A          112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE  190 (218)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            9999999999999999  999999999999987 444433332                  446666666  58889999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcch
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEE  188 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~  188 (724)
                      +|+.++|+||+++||||+|+++++
T Consensus       191 ~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          191 RDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             SCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             CCCEEcHHHHHHCCCCcEEcCcCC
Confidence            999999999999999999998765

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.46  E-value=1.4e-13  Score=144.66  Aligned_cols=186  Identities=17%  Similarity=0.134  Sum_probs=128.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +...++. +.+++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   60 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAAA   60 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            58999999999999999999999999999999988765321           12             2223444 45678


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCC--HHHHhcccCC-CCCEEEEecCCCCC----CCCeeeE
Q 004918          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH----VMPLLEI  458 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~~p~~----~~~lvei  458 (724)
                      +|+||+|+|.+..++..+.  .++.+.++++++|++.+++.+  ...+...+.. ..+++.. +..+..    .+.+..+
T Consensus        61 ~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~  139 (301)
T 3cky_A           61 SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTIM  139 (301)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEE
Confidence            9999999986665554443  278888899999988777663  3455554432 2234331 211110    0122334


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchh----hhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA----VNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~i----~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      +.+   +++.++.+.++++.+|..++++++ ..|..    .|.+   +...+.|++.+.+. |+++++++.++
T Consensus       140 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  209 (301)
T 3cky_A          140 VGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII  209 (301)
T ss_dssp             EES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            443   689999999999999999888754 34433    4554   34567899888765 89999988887

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.46  E-value=6.1e-13  Score=136.74  Aligned_cols=185  Identities=11%  Similarity=0.086  Sum_probs=129.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++||+|||+|.||..++..|.+.|++|++||+++++++...+..          |             +..+++. +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------g-------------~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------A-------------LPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------T-------------CCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------C-------------CEeeCCHHHHHh
Confidence            35899999999999999999999999999999998876643210          1             2223444 4567


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCC-eeeEecCCCCC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS  465 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveii~~~~t~  465 (724)
                      ++|+||+|+|  .....+++.++    .++++|++.+++++++.+........+++..|+..|..... ...++++..++
T Consensus        60 ~~D~Vi~~v~--~~~~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIK--PQLFETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSC--GGGHHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeC--cHhHHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            9999999999  44555565543    47778888888888888877776555788888877776655 35566777789


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCC-ch------hhhhhhhHHHHHHH-HHHHcCCCHHHHHHHH
Q 004918          466 AQVILDLMTVGKIIKKVPVVVGNCT-GF------AVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI  522 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~p-G~------i~nRl~~~~~~Ea~-~l~~~Gv~~~~ID~a~  522 (724)
                      ++.++.++++++.+| .++++++.. ..      ..|.++..+..... .....|++++++-.++
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~  197 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIV  197 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999 567776421 00      01222233332211 2445577777666655

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.45  E-value=3.3e-13  Score=141.78  Aligned_cols=184  Identities=18%  Similarity=0.223  Sum_probs=126.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||..+|..|++.|++|++||+++++++...+           .|             +..+++. +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            48999999999999999999999999999999988765432           12             2233444 45678


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCH--HHHhcccCCCCCEEEEecCCCCCC-------CCee
Q 004918          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHV-------MPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~p~~~-------~~lv  456 (724)
                      +|+||+|+|.+..++..++  +++.+.++++++|++.+++.+.  ..+...+...    +.||+..|..       ...+
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~pv~~~~~~~~~~~~  137 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK----GVEMLDAPVSGGEPKAIDGTL  137 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT----TCEEEECCEESHHHHHHHTCE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEecCCCCHhHHhcCCE
Confidence            9999999996555544443  5677888899988766555442  3455544321    2233222111       1113


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchhh---hhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~i~---nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      .++.+.  +++.++.+.++++.+|+.++++++ ..|...   |+.+    ...++|++.+.+. |+++++++.++
T Consensus       138 ~~~~~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  210 (299)
T 1vpd_A          138 SVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI  210 (299)
T ss_dssp             EEEEES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEeCC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            444443  689999999999999999888854 444432   3333    3577899887765 89999998887

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.45  E-value=2.2e-14  Score=149.61  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhC-CCCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG-NFFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~-~~~~p~  697 (724)
                      .+++++||++.++++||+.++++|++ ++++||.++..|+|+|+   |||+++|.+|+|++++++++   ..+ +++.|+
T Consensus       188 ~~g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~---~~~~~~~~~~  260 (283)
T 4e12_A          188 KAGYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPK---GPFEIFDIVGLTTAYNISSV---SGPKQREFAA  260 (283)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHT---SCHHHHHHHH
T ss_pred             CCCEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---CHHHHHHhccHHHHHHHHhc---cccCcccCch
Confidence            46789999999999999999999999 99999999999999999   99999999999999999884   222 256788


Q ss_pred             HHHHHHH-------HcCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAP  713 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~  713 (724)
                      +++++|+       |+|+|||+|
T Consensus       261 ~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          261 YLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHHHCCCCceeCCeEeecC
Confidence            8999998       899999998

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.45  E-value=1.6e-12  Score=135.10  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=118.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||.++|..|.+.|++|++||++++.++.+.+           .|..           ...+++++.+++||
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g~~-----------~~~~~~~~~~~~~D   59 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLV-----------DEAGQDLSLLQTAK   59 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSC-----------SEEESCGGGGTTCS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-----------CCCC-----------ccccCCHHHhCCCC
Confidence            7999999999999999999999999999999988765421           1211           01234553338999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCC------------CCCeee
Q 004918          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE  457 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~------------~~~lve  457 (724)
                      +||+|+|  .+...+++.++.+.++++++|++. ++.....+........++++.||.....            .++.+.
T Consensus        60 ~vi~av~--~~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~  136 (279)
T 2f1k_A           60 IIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYV  136 (279)
T ss_dssp             EEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEE
T ss_pred             EEEEECC--HHHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEE
Confidence            9999999  677888999999999999988764 5555443332222223899999875221            233667


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchhhhh
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAVNR  496 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG~i~nR  496 (724)
                      ++++..++++..+.++++++.+|..++++.+ ....+...
T Consensus       137 ~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~  176 (279)
T 2f1k_A          137 LTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAW  176 (279)
T ss_dssp             EEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence            7777778999999999999999999888864 33444433

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.45  E-value=1.2e-12  Score=136.30  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=116.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      |+||+|||+|.||.++|..|++.|+  +|++||++++.++.+.           +.|..           ...+++. +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGII-----------DEGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCc-----------ccccCCHHHH
Confidence            4689999999999999999999999  9999999998876532           12211           0123445 56


Q ss_pred             cC-CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCC----------
Q 004918          385 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----------  451 (724)
Q Consensus       385 ~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~----------  451 (724)
                      ++ +||+||+|||  .....+++.++.+.++++++|++.+++..  ...+...+..  ++++.||+..+.          
T Consensus        59 ~~~~aDvVilavp--~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~  134 (281)
T 2g5c_A           59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN  134 (281)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred             hcCCCCEEEEcCC--HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence            78 9999999999  56667888899888999988775444333  2334444432  488888865321          


Q ss_pred             --CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       452 --~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                        .+..+.++++..++++.++.++++++.+|..++++++
T Consensus       135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  173 (281)
T 2g5c_A          135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  173 (281)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence              3455777888788999999999999999999888764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.45  E-value=1.8e-12  Score=136.90  Aligned_cols=168  Identities=14%  Similarity=0.173  Sum_probs=113.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc---cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~  384 (724)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++...+.   .+. ....+       .....++..+++.   ++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---g~~-~~~~~-------~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN---GLI-ADFNG-------EEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH---CEE-EEETT-------EEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC---CEE-EEeCC-------CeeEecceeecchhhccc
Confidence            4689999999999999999999999999999999887764321   000 00000       0001123323322   23


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhcccCCCCCEE-EEecCCCCCCCC--------
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP--------  454 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~i-g~h~~~p~~~~~--------  454 (724)
                      ++++|+||.|+|  .....++++++.+.++++++|++.++++.. ..+.+.+. +.+++ |.+++..+..+|        
T Consensus        72 ~~~~d~vi~~v~--~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTK--AQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSC--HHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEec--cccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence            459999999999  556788999999999999999988888776 44555554 33677 444433222221        


Q ss_pred             -eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004918          455 -LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC  489 (724)
Q Consensus       455 -lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  489 (724)
                       .+.+.....++++..+.+.++++.+|..+++.++.
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~  184 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV  184 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence             12344444567899999999999999987777664

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.42  E-value=3e-13  Score=150.36  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHH
Q 004918          463 RTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLD  536 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~g~~~---Gp~~~~D  536 (724)
                      .+++++.+.+..+.+.+|+.++.+  .+|+|+||++.+++|||++++++|+  +++|||.++ .|+|||+   |||+++|
T Consensus       331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D  408 (463)
T 1zcj_A          331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA  408 (463)
T ss_dssp             EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence            468999999998888888766543  3799999999999999999999998  599999999 9999998   9999999


Q ss_pred             hhchHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHcCC
Q 004918          537 LAGYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGR  572 (724)
Q Consensus       537 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~g~  572 (724)
                      .+|+|.+.++++.+++.+++  ++.|+++|++|+++|+
T Consensus       409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~  446 (463)
T 1zcj_A          409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS  446 (463)
T ss_dssp             HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred             HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence            99999999999999999998  4459999999999886

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.42  E-value=1.2e-13  Score=144.79  Aligned_cols=181  Identities=19%  Similarity=0.150  Sum_probs=124.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (724)
                      ||+|||+|.||..+|..|+++|++|++||+++++++...+           .|             +..+++. +.++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~~   57 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------AG-------------EQVVSSPADVAEKA   57 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------TT-------------CEECSSHHHHHHHC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcC
Confidence            7999999999999999999999999999999988765421           11             2334444 457889


Q ss_pred             CEEEEcccCChHHHHHHHHH---HHhhCCCCcEEEecCCCCCHHHHhc---ccCCCCCEEEEecCCCCCCC-------Ce
Q 004918          389 DMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHVM-------PL  455 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~~~~~~~---~~~~~~r~ig~h~~~p~~~~-------~l  455 (724)
                      |+||+|+|.+..++ .++.+   +.+.++++++|++ ++++.+.....   .....    +.+|.+.|...       ..
T Consensus        58 Dvvi~~vp~~~~~~-~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~~  131 (296)
T 2gf2_A           58 DRIITMLPTSINAI-EAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSGN  131 (296)
T ss_dssp             SEEEECCSSHHHHH-HHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHTC
T ss_pred             CEEEEeCCCHHHHH-HHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcCc
Confidence            99999998555544 45554   3446678888888 88888765442   22211    22333322111       11


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cch---hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG~---i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      ..++.+  .+++.++.++++++.+|+.++.+++. .|.   ++|+.+.    .+++|++.+.+. |+++++++.++
T Consensus       132 ~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~  205 (296)
T 2gf2_A          132 LTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKIL  205 (296)
T ss_dssp             EEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            334444  36888999999999999998887652 222   2344432    577899988765 89999999988

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.42  E-value=5.2e-13  Score=148.90  Aligned_cols=202  Identities=16%  Similarity=0.174  Sum_probs=137.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCC--CHHHHHHhh-----cCccc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--TQDKANNAL-----KMLKG  378 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~-----~~i~~  378 (724)
                      |+||+|||+|.||.++|..|+++  |++|++||+++++++...+            +..  ........+     .++.+
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~------------g~~~i~e~~l~~~~~~~~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS------------PTLPIYEPGLKEVVESCRGKNLFF   72 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC------------CCCCcCCCCHHHHHHHhhcCCEEE
Confidence            56999999999999999999998  8999999999998776421            110  000000111     24666


Q ss_pred             ccCc-cCcCCCCEEEEcccCChHH-------------HHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCC-CC
Q 004918          379 VLDY-SEFKDVDMVIEAVIESVPL-------------KQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQ-DR  440 (724)
Q Consensus       379 ~~~~-~~~~~aDlVIeav~e~~~~-------------k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~-~r  440 (724)
                      ++++ +++++||+||+|||.+...             ..++.+++.+.++++++|+. +|+.++.   .+...+... ..
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~g~~~~l~~~l~~~~~~  151 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE-KSTVPVRAAESIRRIFDANTKP  151 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE-CSCCCTTHHHHHHHHHHHTCCT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE-CCcCCchHHHHHHHHHHHhCCC
Confidence            7776 5678999999999865532             45777888888899988754 4444432   233332211 11


Q ss_pred             EEEEe-cCCCCCCCCeee---------E-ecCCC--CCHHHHHHHHHHHHHc-CCeeEEEcC-----CCchhhhhh---h
Q 004918          441 IIGAH-FFSPAHVMPLLE---------I-VRTER--TSAQVILDLMTVGKII-KKVPVVVGN-----CTGFAVNRA---F  498 (724)
Q Consensus       441 ~ig~h-~~~p~~~~~lve---------i-i~~~~--t~~e~~~~~~~l~~~l-Gk~~v~v~d-----~pG~i~nRl---~  498 (724)
                      .+..+ .++|....+...         + +.++.  +++++.+.++++++.+ |+.++++++     ...++.|.+   .
T Consensus       152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~  231 (467)
T 2q3e_A          152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR  231 (467)
T ss_dssp             TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence            11111 245555544432         3 34433  3788999999999998 777888764     345777875   3


Q ss_pred             hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          499 FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       499 ~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      .++++|+..+.+. |++++++..++
T Consensus       232 ia~~nE~~~l~~~~Gid~~~v~~~~  256 (467)
T 2q3e_A          232 ISSINSISALCEATGADVEEVATAI  256 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5788999999877 89999999998

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.42  E-value=1.4e-12  Score=143.40  Aligned_cols=203  Identities=16%  Similarity=0.126  Sum_probs=133.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH--hhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~~  385 (724)
                      -+|+|||+|.||.++|.+|+++||+|++||+++++++...+...    ...+.| + .+-...  ..+++.+++++ +++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~----~~~epg-l-~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVM----PIYEPG-L-DALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCC----SSCCTT-H-HHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCC----CccCCC-H-HHHHHhhcccCCEEEECCHHHHH
Confidence            47999999999999999999999999999999998887543100    000000 0 000000  12568888888 678


Q ss_pred             CCCCEEEEcccCChH---------HHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccC----CCCCEEEEecCCC
Q 004918          386 KDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQDRIIGAHFFSP  449 (724)
Q Consensus       386 ~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~----~~~r~ig~h~~~p  449 (724)
                      ++||+||.|||...+         ..+++++.+.+.++++++|++. |++++.   .+...+.    ...-.+.   ++|
T Consensus        83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgtt~~l~~~l~e~~~~~d~~v~---~~P  158 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVPVGTGDEVERIIAEVAPNSGAKVV---SNP  158 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCCTTHHHHHHHHHHHHSTTSCCEEE---ECC
T ss_pred             hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCCchHHHHHHHHHHHhCCCCCceEE---eCc
Confidence            999999999987653         5788889999999999988764 455543   2222211    1111122   133


Q ss_pred             CCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCe---eEEEcCCC-----chhhhhh---hhHHHHHHHHHH
Q 004918          450 AHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKV---PVVVGNCT-----GFAVNRA---FFPYSQSARLLV  509 (724)
Q Consensus       450 ~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk~---~v~v~d~p-----G~i~nRl---~~~~~~Ea~~l~  509 (724)
                      ....+.-         -++.|. .++++.+.+++++..+++.   ++++++..     .++.|-+   ..+++||+..+.
T Consensus       159 e~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~  237 (446)
T 4a7p_A          159 EFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC  237 (446)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222221         233332 3689999999999999875   57766532     2333433   347789999888


Q ss_pred             Hc-CCCHHHHHHHH
Q 004918          510 SL-GVDVFRIDSAI  522 (724)
Q Consensus       510 ~~-Gv~~~~ID~a~  522 (724)
                      +. |++++++-.++
T Consensus       238 ~~~GiD~~~v~~~~  251 (446)
T 4a7p_A          238 EQVGADVQEVSRGI  251 (446)
T ss_dssp             HHTTCCHHHHHHHH
T ss_pred             HHcCCCHHHHHHHH
Confidence            76 99999988888

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.41  E-value=2.8e-12  Score=141.72  Aligned_cols=203  Identities=15%  Similarity=0.102  Sum_probs=135.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHH--hhcCcccccCcc-C
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANN--ALKMLKGVLDYS-E  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~--~~~~i~~~~~~~-~  384 (724)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+....    ....+   -.+ ...  ..+++.++++++ +
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~----i~e~g---l~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIP----IYEPG---LEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSC----CCSTT---HHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCc----ccCCC---HHHHHHhhcccCcEEEECCHHHH
Confidence            589999999999999999999999999999999988775431000    00000   000 000  124677788884 5


Q ss_pred             cCCCCEEEEcccCChH--------HHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCC----C---CCEEEEec
Q 004918          385 FKDVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS----Q---DRIIGAHF  446 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~----~---~r~ig~h~  446 (724)
                      +++||+||.|||.+.+        ...++++++.++++++++|++.+ ++++.   .+...+..    .   ..+.-.  
T Consensus        76 ~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~--  152 (450)
T 3gg2_A           76 VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIA--  152 (450)
T ss_dssp             GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEE--
T ss_pred             HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEE--
Confidence            8999999999986642        77888899999999999887544 44432   22222210    0   112111  


Q ss_pred             CCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCC--eeEEEcCCC-----chhhhhh---hhHHHHHHHH
Q 004918          447 FSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKK--VPVVVGNCT-----GFAVNRA---FFPYSQSARL  507 (724)
Q Consensus       447 ~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk--~~v~v~d~p-----G~i~nRl---~~~~~~Ea~~  507 (724)
                      ++|....+..         -++-|. .++++.+.++++++.+++  .++++.+..     .++.|-+   ..+++||+..
T Consensus       153 ~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~  231 (450)
T 3gg2_A          153 SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN  231 (450)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2444333321         133332 368999999999999987  366665532     2444543   3577899998


Q ss_pred             HHHc-CCCHHHHHHHH
Q 004918          508 LVSL-GVDVFRIDSAI  522 (724)
Q Consensus       508 l~~~-Gv~~~~ID~a~  522 (724)
                      +.+. |++++++-.++
T Consensus       232 l~~~~Gid~~~v~~~~  247 (450)
T 3gg2_A          232 LCERVGADVSMVRLGI  247 (450)
T ss_dssp             HHHHHTCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHH
Confidence            8877 99999999888

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.41  E-value=9e-13  Score=143.87  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=131.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHH--hhcCcccccCccC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANN--ALKMLKGVLDYSE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~--~~~~i~~~~~~~~  384 (724)
                      -.|..|||+|.||.++|.+|+++||+|++||+++++++...+....    ..+.|   -++ ...  ..+++.++++   
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~p----i~epg---l~~ll~~~~~~g~l~~ttd---   80 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQIS----IEEPG---LQEVYEEVLSSGKLKVSTT---   80 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS----SCCTT---HHHHHHHHHHTTCEEEESS---
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCC----cCCCC---HHHHHHhhcccCceEEeCc---
Confidence            4689999999999999999999999999999999998876431000    00000   000 000  1246777776   


Q ss_pred             cCCCCEEEEcccCChH----------HHHHHHHHHHhhCCCCcEEEecCCCCCHHH---Hhccc-C-CC----CCEEEEe
Q 004918          385 FKDVDMVIEAVIESVP----------LKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKT-S-SQ----DRIIGAH  445 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~----------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~-~-~~----~r~ig~h  445 (724)
                      +++||+||.|||.+..          ......+.+.+.++++++|+. .||.++..   +...+ . ..    ..|.-+ 
T Consensus        81 ~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~-~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~-  158 (431)
T 3ojo_A           81 PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV-ESTIAPKTMDDFVKPVIENLGFTIGEDIYLV-  158 (431)
T ss_dssp             CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE-CSCCCTTHHHHTHHHHHHTTTCCBTTTEEEE-
T ss_pred             hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE-ecCCChhHHHHHHHHHHHHcCCCcCCCeEEE-
Confidence            4589999999997652          356667889999999998764 45555432   22211 1 11    112111 


Q ss_pred             cCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cc---hhhhhhh----hHHHHHHHHH
Q 004918          446 FFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAF----FPYSQSARLL  508 (724)
Q Consensus       446 ~~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG---~i~nRl~----~~~~~Ea~~l  508 (724)
                       ++|....+.-         -++.|.  ++++.+.++++++.+++.++++++. .+   .++|.++    .+++||+..+
T Consensus       159 -~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l  235 (431)
T 3ojo_A          159 -HCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKI  235 (431)
T ss_dssp             -ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2443332221         355553  6899999999999999888777542 12   2334332    4778999988


Q ss_pred             HHc-CCCHHHHHHHH
Q 004918          509 VSL-GVDVFRIDSAI  522 (724)
Q Consensus       509 ~~~-Gv~~~~ID~a~  522 (724)
                      .+. |+++.++-+++
T Consensus       236 ~e~~GiD~~~v~~~~  250 (431)
T 3ojo_A          236 CNNLNINVLDVIEMA  250 (431)
T ss_dssp             HHHTTCCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHH
Confidence            876 99999988888

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.41  E-value=2.3e-13  Score=142.70  Aligned_cols=182  Identities=17%  Similarity=0.148  Sum_probs=125.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++||+|||+|.||..+|..|++.|++|++|| ++++++...+           .|             +...++. +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            3589999999999999999999999999999 8877655321           12             2223444 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHH---HHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCCC--------C
Q 004918          387 DVDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV--------M  453 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~~--------~  453 (724)
                      ++|+||+|+|.+..++ .++.   ++.+.++++++|++.+++.+  ...+...+...    +.||++.|..        +
T Consensus        58 ~~D~vi~~vp~~~~~~-~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g  132 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVE-DVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREG  132 (295)
T ss_dssp             TCSEEEECCSSHHHHH-HHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHT
T ss_pred             cCCEEEEECCCHHHHH-HHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcC
Confidence            9999999999655544 4444   67777888998886655533  23455544331    3455433321        2


Q ss_pred             CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc----hhhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       454 ~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~pG----~i~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      .+..++.+   +++.++.+.++++.+|..++++++ ..+    ++.|.+   +...++|++.+.+. |++++++..++
T Consensus       133 ~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~  207 (295)
T 1yb4_A          133 TLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL  207 (295)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            33444444   689999999999999999888865 333    234443   23577899888866 89999998888

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.41  E-value=9.1e-13  Score=135.61  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=110.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      ++||+|||+|.||+++|..|+++|    ++|++||+++++                 .|             +..+++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            358999999999999999999999    799999999764                 01             2223344 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeee-EecC
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT  461 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~  461 (724)
                      +.+++||+||+|+|  .....+++.++.+.+ ++++|++.+++++...+...+....+++...+..|......+. ++++
T Consensus        54 ~~~~~~D~vi~~v~--~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVK--PDIAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSC--TTTHHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeC--HHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            55678999999999  456778888888888 5677788899999887777665433444333334444434344 4567


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          462 ERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       462 ~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      +.++++.++.++++++.+|+ ++++++
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~  156 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKE  156 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            77899999999999999997 777764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.41  E-value=1.1e-12  Score=140.72  Aligned_cols=169  Identities=13%  Similarity=0.066  Sum_probs=116.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      +.++||+|||+|.||+++|..|+++|++|++||++++.++...+...+  ..+...-.        ...++.+++++ ++
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~--~~~l~g~~--------l~~~i~~t~d~~ea   96 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN--NRYLPNYP--------FPETLKAYCDLKAS   96 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB--TTTBTTCC--------CCTTEEEESCHHHH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC--cccCCCCc--------cCCCeEEECCHHHH
Confidence            345689999999999999999999999999999999987765432100  00011000        12356677777 57


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH------HHhcccCCCCCEEEEecCCCCC------C
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVGEKTSSQDRIIGAHFFSPAH------V  452 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~------~~~~~~~~~~r~ig~h~~~p~~------~  452 (724)
                      +++||+||+|||  .+..+++++++.++++++++|++.++++...      .+.+.+.. ..+..+  ..|.+      .
T Consensus        97 ~~~aDvVilaVp--~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vl--sgP~~a~ev~~g  171 (356)
T 3k96_A           97 LEGVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVI--SGPSLATEVAAN  171 (356)
T ss_dssp             HTTCCEEEECCC--HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEE--ESSCCHHHHHTT
T ss_pred             HhcCCEEEECCC--HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEE--ECccHHHHHHcC
Confidence            899999999999  7788999999999999999999888877654      23333331 122111  12221      1


Q ss_pred             CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       453 ~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      .+...++.+  .+++..+.+++++...+..+++..|..|
T Consensus       172 ~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g  208 (356)
T 3k96_A          172 LPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG  208 (356)
T ss_dssp             CCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred             CCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence            112122222  3788999999999999988888777554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.40  E-value=3.1e-13  Score=135.44  Aligned_cols=154  Identities=18%  Similarity=0.236  Sum_probs=112.3

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+||+|||+|.||.++|..|+++|++|++ |||+++++++..+..          |            .....++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g------------~~~~~~~~~~   78 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G------------ASVKAVELKD   78 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T------------TTEEECCHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C------------CCcccChHHH
Confidence            4567999999999999999999999999999 999999877643211          1            0112334466


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--------------CHHHHhcccCCCCCEEEEecCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--------------DLNIVGEKTSSQDRIIGAHFFSPA  450 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--------------~~~~~~~~~~~~~r~ig~h~~~p~  450 (724)
                      ++++|+||+|+|  .+...+++.++.+ + ++++|++.++++              ....+++.++ ..+++..+++.|.
T Consensus        79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~  153 (220)
T 4huj_A           79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA  153 (220)
T ss_dssp             HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred             HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence            889999999998  7778888888766 4 577888887776              3455666554 4566666554333


Q ss_pred             CCC---------CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          451 HVM---------PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       451 ~~~---------~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      ...         +...++.+  .++++.+.++++++.+|+.++.+++
T Consensus       154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            221         12233344  3699999999999999999999876

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.39  E-value=2.8e-12  Score=139.75  Aligned_cols=195  Identities=16%  Similarity=0.195  Sum_probs=131.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh----hcCcccccCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY  382 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~~  382 (724)
                      .++||+|||+|.||.++|..|++ |++|++||+++++++...+..          ..+.....+..    ..++.+++++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd~  103 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTDK  103 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcCH
Confidence            45699999999999999999998 999999999999988754311          01111111111    2367888887


Q ss_pred             -cCcCCCCEEEEcccCCh---------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCC
Q 004918          383 -SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSP  449 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p  449 (724)
                       +++++||+||+|||++.         ....++.+.+.+ ++++++|+. .|+.++.   ++...+..  .  ++.| +|
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~--~v~~-sP  176 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--D--NVIF-SP  176 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--C--CEEE-CC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--c--cEee-cC
Confidence             67899999999999864         356777788888 888888864 5555543   34443322  2  2222 66


Q ss_pred             CCCCCee---------eEecCCCCCHHHHHHHHHHHHH--cCC-eeEEEcCCCc------hhhhhh---hhHHHHHHHHH
Q 004918          450 AHVMPLL---------EIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGNCTG------FAVNRA---FFPYSQSARLL  508 (724)
Q Consensus       450 ~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~--lGk-~~v~v~d~pG------~i~nRl---~~~~~~Ea~~l  508 (724)
                      ....+.-         .++.|.  +++..+.+.+++..  +++ .++++.+ ++      ++.|-+   ..+++||+..+
T Consensus       177 e~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~-~~~AE~~Kl~~N~~~a~~Ia~~nEl~~l  253 (432)
T 3pid_A          177 EFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTD-STEAEAIKLFANTYLALRVAYFNELDSY  253 (432)
T ss_dssp             CCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecC-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544331         244443  35677888999886  554 3555544 22      333433   24778999988


Q ss_pred             HHc-CCCHHHHHHHH
Q 004918          509 VSL-GVDVFRIDSAI  522 (724)
Q Consensus       509 ~~~-Gv~~~~ID~a~  522 (724)
                      .+. |+++.++-+++
T Consensus       254 ae~~GiD~~~v~~~~  268 (432)
T 3pid_A          254 AESQGLNSKQIIEGV  268 (432)
T ss_dssp             HHHTTCCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHH
Confidence            876 99999988887

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.39  E-value=9.6e-13  Score=145.58  Aligned_cols=200  Identities=14%  Similarity=0.080  Sum_probs=131.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh------hcCcccccCc-
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA------LKMLKGVLDY-  382 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~-  382 (724)
                      ||+|||+|.||.++|..|+++|++|++||+++++++...+..          -.+........      .+++.+++++ 
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~g~l~~t~~~~   71 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK----------SPIVEPGLEALLQQGRQTGRLSGTTDFK   71 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHhhcccCceEEeCCHH
Confidence            799999999999999999999999999999999887653210          00000000111      2457777787 


Q ss_pred             cCcCCCCEEEEcccCChH--------HHHHHHHHHHhhCCC---CcEEEecCCCCCHHH----HhcccCC--CCCE-EEE
Q 004918          383 SEFKDVDMVIEAVIESVP--------LKQKIFSELEKACPP---HCILATNTSTIDLNI----VGEKTSS--QDRI-IGA  444 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~---~~ii~s~ts~~~~~~----~~~~~~~--~~r~-ig~  444 (724)
                      +++++||+||+|||.+..        ...++++++.+.+++   +++|+. .|+.++..    +...+..  ..++ +..
T Consensus        72 ~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~~  150 (436)
T 1mv8_A           72 KAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVDF  150 (436)
T ss_dssp             HHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred             HHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCcE
Confidence            468999999999986553        245677889888888   888764 33443322    2222211  1111 000


Q ss_pred             e-cCCCCCCCCee---------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----CCchhhhhhh---hHHHHHHH
Q 004918          445 H-FFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYSQSAR  506 (724)
Q Consensus       445 h-~~~p~~~~~lv---------eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-----~pG~i~nRl~---~~~~~Ea~  506 (724)
                      + .++|....+..         .++.|. +++++.+.+.++++.+|+. +++.+     ...++.|.+.   .++++|+.
T Consensus       151 ~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~  228 (436)
T 1mv8_A          151 GVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANEIG  228 (436)
T ss_dssp             EEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 12444444332         244443 3688999999999999984 44444     2345667543   57889999


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 004918          507 LLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       507 ~l~~~-Gv~~~~ID~a~  522 (724)
                      .+.+. |++++++..++
T Consensus       229 ~l~~~~Gid~~~v~~~~  245 (436)
T 1mv8_A          229 NIAKAVGVDGREVMDVI  245 (436)
T ss_dssp             HHHHHTTSCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHh
Confidence            88877 89999999988

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.38  E-value=4e-13  Score=148.75  Aligned_cols=192  Identities=13%  Similarity=0.040  Sum_probs=129.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc---
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---  383 (724)
                      .++||+|||+|.||.+||..|+++|++|++||+++++++...+           .+..        -.++..+++++   
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------g~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAK--------GTKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTT--------TSSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccC--------CCceeccCCHHHHH
Confidence            4578999999999999999999999999999999998776532           1100        01233344442   


Q ss_pred             -CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCee
Q 004918          384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  456 (724)
Q Consensus       384 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lv  456 (724)
                       .++++|+||.|||.+.. .++++.++.+.++++.+|++.+++.+.+  .+...+. ...+|++......+   ..++  
T Consensus        64 ~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~--  140 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQA-VDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP--  140 (484)
T ss_dssp             HTBCSSCEEEECSCSSHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--
T ss_pred             hhccCCCEEEEecCChHH-HHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC--
Confidence             23469999999996544 4567789999999999998766665533  2333332 22345543211111   1122  


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCee-------EEEcCC-Cch----hhhhhh---hHHHHHHHHHHHc--CCCHHHHH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAF---FPYSQSARLLVSL--GVDVFRID  519 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d~-pG~----i~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID  519 (724)
                      -++.+.  ++++++.++++++.+|..+       +++++. .|.    +-|-+.   ...++|++.+++.  |++++++-
T Consensus       141 ~im~GG--~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~  218 (484)
T 4gwg_A          141 SLMPGG--NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA  218 (484)
T ss_dssp             EEEEEE--CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eeecCC--CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            234443  5899999999999999877       666652 222    224332   3556799999976  88999998


Q ss_pred             HHH
Q 004918          520 SAI  522 (724)
Q Consensus       520 ~a~  522 (724)
                      .++
T Consensus       219 ~v~  221 (484)
T 4gwg_A          219 QAF  221 (484)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.37  E-value=2.6e-12  Score=143.49  Aligned_cols=201  Identities=14%  Similarity=0.165  Sum_probs=134.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCC--HHHHHHh-----hcCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNA-----LKML  376 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~-----~~~i  376 (724)
                      ++++||+|||+|.||.++|..|+++  |++|++||+++++++...+            +...  .......     ..++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~~~~~~~~~l   74 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS------------DKLPIYEPGLDEIVFAARGRNL   74 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHHhhcCCE
Confidence            3457999999999999999999998  7999999999998876432            1110  0000111     1356


Q ss_pred             ccccCc-cCcCCCCEEEEcccCCh-------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCC--
Q 004918          377 KGVLDY-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--  437 (724)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeav~e~~-------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~--  437 (724)
                      .+++++ +++++||+||+|||...             ....++++.+.++++++++|+. .|+.++.   .+...+..  
T Consensus        75 ~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~  153 (481)
T 2o3j_A           75 FFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQ  153 (481)
T ss_dssp             EEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHT
T ss_pred             EEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhh
Confidence            777776 67889999999998643             2467888899999999998874 3344432   23222211  


Q ss_pred             C----CC-EEEEecCCCCCCCCee---------eEecCCCCC---HHHHHHHHHHHHHcCC-eeEEEcC-----CCchhh
Q 004918          438 Q----DR-IIGAHFFSPAHVMPLL---------EIVRTERTS---AQVILDLMTVGKIIKK-VPVVVGN-----CTGFAV  494 (724)
Q Consensus       438 ~----~r-~ig~h~~~p~~~~~lv---------eii~~~~t~---~e~~~~~~~l~~~lGk-~~v~v~d-----~pG~i~  494 (724)
                      .    .. ++..   +|....+..         .++-|..++   +++.+.++++++.+++ .++++.+     ...++.
T Consensus       154 ~~~~~~d~~v~~---~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~  230 (481)
T 2o3j_A          154 KNNENLKFQVLS---NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA  230 (481)
T ss_dssp             C----CCEEEEE---CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH
T ss_pred             CcCcCCceEEEe---CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH
Confidence            1    11 2333   333322221         244332222   3688999999999996 6777654     233555


Q ss_pred             hhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          495 NRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       495 nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      |.+   ..+++||+..+.+. |++++++..++
T Consensus       231 N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~  262 (481)
T 2o3j_A          231 NAFLAQRISSINSISAVCEATGAEISEVAHAV  262 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            653   45788999998877 99999999888

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.37  E-value=7.7e-13  Score=145.10  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHh-hcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCC
Q 004918          619 TEKEIVEMILFPVVNESCRVL-EEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS  697 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l-~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~  697 (724)
                      .+++++||++.++++||+.++ ++| + ++++||.++. ++|||+   |||+++|.+|+|+.+++++.+      .+.|+
T Consensus       232 ~pGfi~Nril~~~~~EA~~l~~~~G-a-~~e~ID~a~~-~~G~pm---GPf~l~D~vGlD~~~~i~~~~------~~~~~  299 (460)
T 3k6j_A          232 CKSFVFNRLLHVYFDQSQKLMYEYG-Y-LPHQIDKIIT-NFGFLM---GPMTVADMNGFDVMEKLKKEN------GLEPN  299 (460)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSC-C-CHHHHHHHHH-HHTBSS---CHHHHHHHHCTHHHHHHHHHS------CCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHh------ccCch
Confidence            479999999999999999999 777 6 8999999998 999999   999999999999999988765      24567


Q ss_pred             HHHHHHH-------HcCCCCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAPVSS  716 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~~~~  716 (724)
                      ++|++|+       |+|+|||+|++.
T Consensus       300 ~~l~~~v~~G~lG~KtG~GFY~y~~~  325 (460)
T 3k6j_A          300 PIEKEMWRLKRYGRKTNKGFYKYDDK  325 (460)
T ss_dssp             HHHHHHHHTTCCBGGGTBSSSEECTT
T ss_pred             HHHHHHHHCCCCeeecCCEEEECCCC
Confidence            8999999       889999999653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.36  E-value=2e-12  Score=135.64  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=106.6

Q ss_pred             CcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       307 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      .++||+||| +|.||+++|..|++.|++|++||++++.                                    +..+.+
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~   63 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESIL   63 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHh
Confidence            357899999 9999999999999999999999998752                                    001346


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCCCCEEEEecCCCCC----CCCeeeEe
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----VMPLLEIV  459 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~~r~ig~h~~~p~~----~~~lveii  459 (724)
                      ++||+||.|||  .....+++.++.+.++++++|++.+|...  +..+....  +.++++.||..++.    .+..+.++
T Consensus        64 ~~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~  139 (298)
T 2pv7_A           64 ANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRC  139 (298)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEE
T ss_pred             cCCCEEEEeCC--HHHHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEe
Confidence            78999999999  55688999999998999998765544322  23333332  46899999965442    33345555


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      ++.  +++.++.+.++++.+|..++++.+
T Consensus       140 ~~~--~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          140 DGR--FPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             EEE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             cCC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence            554  788899999999999999888753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.36  E-value=2.5e-12  Score=143.32  Aligned_cols=193  Identities=14%  Similarity=0.055  Sum_probs=131.0

Q ss_pred             CCCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       305 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      ++.-++|+|||+|.||.+||..|+++|++|++|||++++++...+...         +           ..+..++++ +
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e   71 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENP---------G-----------KKLVPYYTVKE   71 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHST---------T-----------SCEEECSSHHH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCC---------C-----------CCeEEeCCHHH
Confidence            345578999999999999999999999999999999998776543110         0           124445555 3


Q ss_pred             CcCC---CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecCCCC---CCCC
Q 004918          384 EFKD---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMP  454 (724)
Q Consensus       384 ~~~~---aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~  454 (724)
                      .+++   ||+||.|||.+.. .++++.++.+.++++++|++.+++.+.  ..+.+.+. ...+++++.....+   ..++
T Consensus        72 ~v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~  150 (480)
T 2zyd_A           72 FVESLETPRRILLMVKAGAG-TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP  150 (480)
T ss_dssp             HHHTBCSSCEEEECSCSSSH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC
T ss_pred             HHhCCCCCCEEEEECCCHHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC
Confidence            3444   9999999995444 456778899999999998876666644  23444332 23345544221111   1223


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCc----hhhhhhh---hHHHHHHHHHHHc--CCCHHH
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFR  517 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~pG----~i~nRl~---~~~~~Ea~~l~~~--Gv~~~~  517 (724)
                        .++.+.  +++.++.++++++.+|..       ++++++ ..|    ++.|.+.   ...+.|++.+.+.  |+++++
T Consensus       151 --~i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~  226 (480)
T 2zyd_A          151 --SIMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEE  226 (480)
T ss_dssp             --EEEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             --eEEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence              244443  589999999999999987       566654 222    2345543   4566799998876  999999


Q ss_pred             HHHHH
Q 004918          518 IDSAI  522 (724)
Q Consensus       518 ID~a~  522 (724)
                      +..++
T Consensus       227 ~~~l~  231 (480)
T 2zyd_A          227 LAQTF  231 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88776

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.7e-12  Score=145.03  Aligned_cols=191  Identities=13%  Similarity=0.073  Sum_probs=131.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -.+|+|||+|.||.+||..|+++|++|++|||++++++...+..       .. +           ..+..++++ +.++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~-~-----------~gi~~~~s~~e~v~   70 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANE-------AK-G-----------KSIIGATSIEDFIS   70 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT-------TT-T-----------SSEECCSSHHHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc-------cc-C-----------CCeEEeCCHHHHHh
Confidence            35899999999999999999999999999999999877653200       00 0           124445555 3344


Q ss_pred             C---CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecCCCC---CCCCeee
Q 004918          387 D---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (724)
Q Consensus       387 ~---aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (724)
                      +   ||+||.|||.+..+ +++++++.+.++++++|++.+++.+.  ..+.+.+. ...+|+++.....+   ..++  .
T Consensus        71 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~  147 (497)
T 2p4q_A           71 KLKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--S  147 (497)
T ss_dssp             TSCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--E
T ss_pred             cCCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--e
Confidence            4   99999999965544 56678899999999998876665543  23444332 22345544322211   1122  2


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe------eEEEc-CCCch----hhhhhh---hHHHHHHHHHHHc--CCCHHHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKV------PVVVG-NCTGF----AVNRAF---FPYSQSARLLVSL--GVDVFRIDSA  521 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~------~v~v~-d~pG~----i~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~a  521 (724)
                      ++.+.  ++++++.++++++.+|+.      +++++ ...|.    +.|.+.   ...+.|++.+.+.  |++++++..+
T Consensus       148 im~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~  225 (497)
T 2p4q_A          148 LMPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDV  225 (497)
T ss_dssp             EEEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence            44443  688999999999999988      66665 33443    346654   4667899998876  8999999988


Q ss_pred             H
Q 004918          522 I  522 (724)
Q Consensus       522 ~  522 (724)
                      +
T Consensus       226 ~  226 (497)
T 2p4q_A          226 F  226 (497)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.34  E-value=6.1e-12  Score=131.92  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      ++++++..+....+++.++... +-+|.|.-.++.+. |.+..+.          .......+.+ ..+..+++|+|++|
T Consensus       139 G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~~----------g~~~~~a~~l-~al~~~~vPvIavV  205 (327)
T 2f9i_A          139 GMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEER----------GQSESIATNL-IEMASLKVPVIAIV  205 (327)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhhh----------hhHHHHHHHH-HHHHhCCCCEEEEE
Confidence            6899999999999999988764 55666643333222 2221111          1122334455 56899999999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      +|.|.|||+.++++||+++|+++++|++      +.|.++++.++.+..+...+.++    ..++|++|+++|+||+|+|
T Consensus       206 ~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~  275 (327)
T 2f9i_A          206 IGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVIS  275 (327)
T ss_dssp             EEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred             ECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEec
Confidence            9999999999999999999999999996      34666666655555555777777    7899999999999999998


Q ss_pred             c
Q 004918          186 S  186 (724)
Q Consensus       186 ~  186 (724)
                      .
T Consensus       276 e  276 (327)
T 2f9i_A          276 E  276 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.33  E-value=7.5e-12  Score=139.63  Aligned_cols=190  Identities=13%  Similarity=0.029  Sum_probs=130.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      .+||+|||+|.||..+|..|+++|++|++|||++++++...+...         +           ..+..++++ +.++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ---------D-----------KNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------T-----------SCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------C-----------CCeEEeCCHHHHHh
Confidence            468999999999999999999999999999999998776543110         0           124444555 3344


Q ss_pred             ---CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCC-CCCEEEEecCCCC---CCCCeee
Q 004918          387 ---DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLE  457 (724)
Q Consensus       387 ---~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~~p~---~~~~lve  457 (724)
                         ++|+||+|||.+..+ ..+++++.+.++++++|++.+++.+.  ..+.+.+.. ..+++++....++   ..++  .
T Consensus        65 ~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~  141 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S  141 (474)
T ss_dssp             TBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred             hccCCCEEEEEccCchHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence               499999999955444 46678898999999988876666543  345544432 2345544222111   1122  1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe--------eEEEcC-CCc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHHH
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKV--------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  519 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~--------~v~v~d-~pG----~i~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID  519 (724)
                      ++++.  +++.++.++++++.+|..        +.++++ ..|    ++.|.+.   ...+.|++.+.+.  |++++++.
T Consensus       142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~  219 (474)
T 2iz1_A          142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ  219 (474)
T ss_dssp             EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34443  789999999999999987        455554 223    3446553   4567799998875  89999998


Q ss_pred             HHH
Q 004918          520 SAI  522 (724)
Q Consensus       520 ~a~  522 (724)
                      .++
T Consensus       220 ~l~  222 (474)
T 2iz1_A          220 AIF  222 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.32  E-value=2.9e-12  Score=133.74  Aligned_cols=184  Identities=15%  Similarity=0.070  Sum_probs=122.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      |+||+|||+|.||..+|..|++ |++|++||+++++++...+.           |             +..++..+.+++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~   55 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAE   55 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGG
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhC
Confidence            3589999999999999999999 99999999999887664321           1             111222255789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccCCC-CCEEEEecCCC-C---CCCCeeeEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFFSP-A---HVMPLLEIVR  460 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~-~r~ig~h~~~p-~---~~~~lveii~  460 (724)
                      +|+||+|+|.+..+ ..+++++.+.++++++|++.++..+  ...+.+.+... .+++.. +..+ +   ..+.+..++.
T Consensus        56 ~D~vi~~v~~~~~~-~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            99999999955444 4567888888888988874433322  23455544322 233332 2111 1   0112233333


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCC-Cch----hhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF----AVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-pG~----i~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                         .+++.++.+.+++ .+|+.++++++. .+.    +.|.+   +...++|++.+.+. |++++++..++
T Consensus       134 ---~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  200 (289)
T 2cvz_A          134 ---GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVI  200 (289)
T ss_dssp             ---SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence               2789999999999 999988888653 222    23543   34667899888865 89999988887

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.31  E-value=4.3e-12  Score=135.44  Aligned_cols=182  Identities=16%  Similarity=0.088  Sum_probs=122.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .+||+|||+|.||.++|..|...|++|+++|++++. .+.+.           +.|             +..+ +. +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHH
Confidence            358999999999999999999999999999999765 22221           112             1222 44 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH-HHHhhCCCCcEEEecCCCCCHHHHhccc-CCCCCEEEEecCCCCCC---------CC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIGAHFFSPAHV---------MP  454 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~~~~~~~~-~~~~r~ig~h~~~p~~~---------~~  454 (724)
                      ++||+||+|+|  ......++. ++.+.++++++|++. +++.+ .+.... .....+++.||..|.+.         +.
T Consensus        71 ~~aDvVilavp--~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCC--cHHHHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            89999999999  555688888 898899999988865 44443 332222 11235899999766531         33


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCC-e--eEEEc----C-CCchhhhhhhh----HHHHHHH-HHHHcCCCHHHH
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKK-V--PVVVG----N-CTGFAVNRAFF----PYSQSAR-LLVSLGVDVFRI  518 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk-~--~v~v~----d-~pG~i~nRl~~----~~~~Ea~-~l~~~Gv~~~~I  518 (724)
                      .+-++++..++++..+.+..+++.+|. .  ++.+.    + ...++.+..+.    +++..++ .+++.|+++++.
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence            344566667788999999999999998 4  55552    1 22344343332    2333333 335678877644

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.30  E-value=8.2e-12  Score=124.13  Aligned_cols=156  Identities=15%  Similarity=0.167  Sum_probs=113.3

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       310 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ||+||| +|.||..++..|++.|++|+++||++++.+...+.+..    .+..            ..+.. ++. +.+++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~~   64 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAEA   64 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHhc
Confidence            799999 99999999999999999999999999887665432211    1110            11222 233 45788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--------------HHHHhcccCCCCCEEEEecCCCC---
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPA---  450 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--------------~~~~~~~~~~~~r~ig~h~~~p~---  450 (724)
                      +|+||.|+|  ....++++.++.+.++ ++++++.++++.              ..++++.+. ..+++..|+..|.   
T Consensus        65 ~D~Vi~~~~--~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~~  140 (212)
T 1jay_A           65 CDIAVLTIP--WEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAARF  140 (212)
T ss_dssp             CSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHHH
T ss_pred             CCEEEEeCC--hhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHHh
Confidence            999999999  5556688888877664 888888888665              566776665 3677776543322   


Q ss_pred             ----CCCCeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004918          451 ----HVMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  488 (724)
Q Consensus       451 ----~~~~lveii~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d  488 (724)
                          ....+..+++++  +++.++.+.++++.+ |+.++++++
T Consensus       141 ~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          141 ANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                122345566665  689999999999999 999999876

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.29  E-value=1.1e-11  Score=130.41  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=107.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      +++++...+...++++.++.. .+-+|.|.-.++.+. |....+.          .........+ ..+..+++|+|++|
T Consensus       153 G~~~~~~~~Ka~r~~~~A~~~-~lPlI~lvDt~Ga~~-g~~aE~~----------g~~~~~a~~l-~al~~~~vPvIavV  219 (339)
T 2f9y_A          153 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV  219 (339)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCcc-chHHHHH----------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            689999999999999988866 455666643333322 2221111          1122334455 56889999999999


Q ss_pred             CccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      +|.|.|||+.++++||++||.++++|++      +.|.++++.++++..+...|.++    ..++|++|+++|+||+|+|
T Consensus       220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~  289 (339)
T 2f9y_A          220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  289 (339)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence            9999999999999999999999999997      46777888888888788888888    6799999999999999998


Q ss_pred             c
Q 004918          186 S  186 (724)
Q Consensus       186 ~  186 (724)
                      .
T Consensus       290 e  290 (339)
T 2f9y_A          290 E  290 (339)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.29  E-value=1.7e-11  Score=126.20  Aligned_cols=173  Identities=14%  Similarity=0.092  Sum_probs=113.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ||+|||+|.||.++|..|+++|++|++||+  +++.++...+           .|             +.  ++. +.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~~   55 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDVY   55 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHHh
Confidence            799999999999999999999999999999  6666554321           12             11  233 5568


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH---HHHhcccCCCCCEEEEecCCCCC---CCCeeeEec
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAH---VMPLLEIVR  460 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~~~~~~~~~~r~ig~h~~~p~~---~~~lveii~  460 (724)
                      +||+||+|||.+...+.  +.++.+.+++  +|++. |+..+   ..+.+.+.... ++..+++.++.   .+.. .++.
T Consensus        56 ~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~~  128 (264)
T 1i36_A           56 SCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIAS  128 (264)
T ss_dssp             TSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEEE
T ss_pred             cCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEec
Confidence            99999999996544432  3567776766  55443 45443   35555555443 66666655442   2233 3444


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch-----hhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  522 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~-----i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~  522 (724)
                      ++.  .   +.+++ ++.+|+.++++++.+|.     +++..+    ...++|++.+.+. |++++.+ ..+
T Consensus       129 g~~--~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~  193 (264)
T 1i36_A          129 GRD--A---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EML  193 (264)
T ss_dssp             STT--H---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             CCc--H---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHH
Confidence            432  2   67788 99999998888765554     333332    4566798887755 8987644 444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.28  E-value=2.8e-12  Score=149.71  Aligned_cols=89  Identities=15%  Similarity=0.165  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCC-CCCCH
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSR  698 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~  698 (724)
                      +++++||++.++++|++.++++| + ++++||.++ .++|||+   |||+++|.+|+|+.+++++.+++.++++ |.| +
T Consensus       494 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~e~id~~~-~~~g~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~-~  566 (725)
T 2wtb_A          494 TGFAVNRMFFPYTQAAMFLVECG-A-DPYLIDRAI-SKFGMPM---GPFRLCDLVGFGVAIATATQFIENFSERTYKS-M  566 (725)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHSGGGCCCC-T
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhchHHHHHHHHHHHHhcCCccCCh-H
Confidence            68999999999999999999999 5 799999999 8999999   9999999999999999999999888776 888 8


Q ss_pred             HHHHHH-------HcCCCCCCCCC
Q 004918          699 FLEERA-------TKGIPLSAPVS  715 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~~  715 (724)
                      ++++|+       |+|+|||+|++
T Consensus       567 ~l~~~v~~g~lG~k~g~GfY~y~g  590 (725)
T 2wtb_A          567 IIPLMQEDKRAGEATRKGFYLYDD  590 (725)
T ss_dssp             HHHHHHTTC---------------
T ss_pred             HHHHHHHCCCceecCCceeEeCCC
Confidence            999999       89999999953

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.27  E-value=2e-12  Score=150.95  Aligned_cols=89  Identities=17%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCC--
Q 004918          620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS--  697 (724)
Q Consensus       620 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~--  697 (724)
                      +++++||++.++++|++.++++| + ++++||.++ .++|||+   |||+++|.+|+|+.+++++.+++.++++|.|+  
T Consensus       496 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~~~id~~~-~~~G~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~~~  569 (715)
T 1wdk_A          496 PGFLVNRVLFPYFGGFAKLVSAG-V-DFVRIDKVM-EKFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRR  569 (715)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSC
T ss_pred             CChhhhHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCCccCCChH
Confidence            68899999999999999999999 5 799999999 8999998   99999999999999999999998887788888  


Q ss_pred             HHHHHHH-------HcCCCCCCCC
Q 004918          698 RFLEERA-------TKGIPLSAPV  714 (724)
Q Consensus       698 ~~l~~~~-------k~g~gfy~~~  714 (724)
                      ++|++|+       |+|+|||+|+
T Consensus       570 ~~l~~~v~~g~lG~k~g~GfY~y~  593 (715)
T 1wdk_A          570 SAIDALYEAKRLGQKNGKGFYAYE  593 (715)
T ss_dssp             CHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred             HHHHHHHhCchhhhcCCcEEEecc
Confidence            8999999       8899999995

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.26  E-value=3.1e-11  Score=122.91  Aligned_cols=165  Identities=13%  Similarity=0.092  Sum_probs=101.6

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHH-HHHHHHHH-HHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLK-GIKTIEAN-VRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~-~~~~i~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      ..+||+|||+|.||.+||..|+++|++|++|||+++. +.+ ......+. +..+.+           ..+.+..++..+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~e   86 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-----------EHPHVHLAAFAD   86 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-----------GSTTCEEEEHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-----------hcCceeccCHHH
Confidence            4579999999999999999999999999999999986 111 00000000 000111           111223333336


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHH-HhhCCCCcEEEecCCCC----------------CHH-HHhcccCCCCCEE-EE
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTSTI----------------DLN-IVGEKTSSQDRII-GA  444 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~ii~s~ts~~----------------~~~-~~~~~~~~~~r~i-g~  444 (724)
                      .+++||+||.|||  .+...+++.++ .+.+ ++++|++.+.++                .+. .+++.++ ..+++ ++
T Consensus        87 ~~~~aDvVilavp--~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~  162 (245)
T 3dtt_A           87 VAAGAELVVNATE--GASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTL  162 (245)
T ss_dssp             HHHHCSEEEECSC--GGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECS
T ss_pred             HHhcCCEEEEccC--cHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEee
Confidence            6789999999999  44444666677 6666 777887666321                232 3444443 24555 34


Q ss_pred             ecCCCC--------CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCee-EEEcC
Q 004918          445 HFFSPA--------HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVP-VVVGN  488 (724)
Q Consensus       445 h~~~p~--------~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~-v~v~d  488 (724)
                      ++...+        ..+++..++.+.  ++++.+.++++++.+|+.+ +.+++
T Consensus       163 ~~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          163 NTMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             TTSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             cccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence            443211        122333344453  7999999999999999764 77776

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.24  E-value=8.5e-12  Score=132.32  Aligned_cols=122  Identities=17%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.||.++|..++.+|+ +|++||++++.++.....+.+.....            ....++..+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence            589999999999999999999999 99999999998886444443332211            01246777788899999


Q ss_pred             CCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCcEE--EecCCCCCHHHHhcccC--CCCCEEEE
Q 004918          388 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIGA  444 (724)
Q Consensus       388 aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~--~~~r~ig~  444 (724)
                      ||+||+++  |+            +..+++++++++.+++ +++++  +||++... +.+.....  +|+|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            4577999999999998 55655  46655543 34443333  56788775

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.23  E-value=2.1e-11  Score=120.98  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .++||+|||+|.||+++|..|+++|++|++||++++                                         .++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~   56 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT   56 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence            356899999999999999999999999999998864                                         356


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC---------------HHHHhcccCCCCCEEE-EecCCCC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---------------LNIVGEKTSSQDRIIG-AHFFSPA  450 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~---------------~~~~~~~~~~~~r~ig-~h~~~p~  450 (724)
                      +||+||+|+|  ....+++++++.+.++ +++|++.+++++               ...+++.++ ..+++. .|+...|
T Consensus        57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p  132 (209)
T 2raf_A           57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA  132 (209)
T ss_dssp             CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred             cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence            8999999999  6667788888888887 888888777654               234444443 356777 5654322


Q ss_pred             C------C--CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          451 H------V--MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       451 ~------~--~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      .      .  .+...++.+  .+++..+.++++++.+|..++.+++
T Consensus       133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            1      1  122222333  3689999999999999999988877

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.22  E-value=4.5e-11  Score=133.28  Aligned_cols=193  Identities=12%  Similarity=0.053  Sum_probs=128.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-CcC--
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK--  386 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~--  386 (724)
                      ||+|||+|.||..+|..|+++|++|++|||++++++...+..          |... .     ...+..+++++ .++  
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------g~~~-~-----~~~i~~~~~~~e~v~~l   66 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN----------ASAP-F-----AGNLKAFETMEAFAASL   66 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------TTST-T-----GGGEEECSCHHHHHHHB
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------CCCC-C-----CCCeEEECCHHHHHhcc
Confidence            799999999999999999999999999999999877654311          1000 0     01244455653 333  


Q ss_pred             -CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCC-CCCEEEEecCCCC---CCCCeeeEe
Q 004918          387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLEIV  459 (724)
Q Consensus       387 -~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~~p~---~~~~lveii  459 (724)
                       ++|+||+|||....+ .++++++.+.++++++|++.+++.+.  ..+.+.+.. ...++++....++   ..++  .++
T Consensus        67 ~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i~  143 (478)
T 1pgj_A           67 KKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AFF  143 (478)
T ss_dssp             CSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EEE
T ss_pred             cCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eEe
Confidence             599999999965444 56678898999999988876655543  244444432 2345544322211   1122  234


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCch----hhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHHH
Q 004918          460 RTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTGF----AVNRAF---FPYSQSARLLVSL-GVDVFRIDSAIR  523 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~pG~----i~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~~  523 (724)
                      .+.  +++..+.++++++.+|..       ++++++ ..|.    +.|.+.   ..++.|++.+.+. |++++++..++.
T Consensus       144 ~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          144 PGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             EEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             ccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            433  689999999999999987       555554 2222    335443   4567899888866 899999888873

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.21  E-value=3e-11  Score=135.07  Aligned_cols=191  Identities=13%  Similarity=0.069  Sum_probs=128.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c--
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F--  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~--  385 (724)
                      +||+|||+|.||..+|..|+++|++|++|||++++++...+.      ..  .|           ..+..++++++ +  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~------~~--~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN------EA--KG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT------TT--TT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc------cc--cC-----------CCeEEeCCHHHHHhh
Confidence            479999999999999999999999999999999987765321      00  01           12344555533 3  


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeeeE
Q 004918          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  458 (724)
Q Consensus       386 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lvei  458 (724)
                       +++|+||+|||.... ...++.++.+.++++++|++.+++.+..  .+.+.+. ....++++....++   ..++  .+
T Consensus        64 l~~aDvVilaVp~~~~-v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i  140 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQA-VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL  140 (482)
T ss_dssp             BCSSCEEEECSCTTHH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEeCCChHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence             589999999995544 4466788989999999888766665532  3443332 22345554322211   1122  23


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCee-------EEEcC-CCc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHHHHH
Q 004918          459 VRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSA  521 (724)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d-~pG----~i~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~a  521 (724)
                      +.+.  +++.++.++++++.+|..+       +++++ ..|    ++.|.+.   ...+.|++.+.+.  |++++++..+
T Consensus       141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~  218 (482)
T 2pgd_A          141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA  218 (482)
T ss_dssp             EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence            4443  4778999999999999876       44432 223    3446553   4567899988864  8899999888


Q ss_pred             HH
Q 004918          522 IR  523 (724)
Q Consensus       522 ~~  523 (724)
                      +.
T Consensus       219 ~~  220 (482)
T 2pgd_A          219 FE  220 (482)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.20  E-value=1.5e-10  Score=126.14  Aligned_cols=204  Identities=17%  Similarity=0.141  Sum_probs=130.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      .|.+|+|||+|.+|..+|.+|++.||+|+++|+|+++++...+.        ++..+.+.++            -+++.+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCeeE
Confidence            57899999999999999999999999999999999998875431        1111111122            246788


Q ss_pred             ccCc-cCcCCCCEEEEcccC--------ChHHHHHHHHHHHhhCC---CCcEEEecCCCCCHH---HHh-----cccCCC
Q 004918          379 VLDY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACP---PHCILATNTSTIDLN---IVG-----EKTSSQ  438 (724)
Q Consensus       379 ~~~~-~~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~---~~~ii~s~ts~~~~~---~~~-----~~~~~~  438 (724)
                      +++. +++++||++|.|||.        |+.......+.+.++++   ++.+|+. .||.++.   ++.     +.....
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~~~~  166 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEAGGV  166 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhCCCC
Confidence            8887 568999999999974        44556667777776664   4555543 3443332   111     111111


Q ss_pred             CCEEEEecCCCCCCCCe---------eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC----CCchhhhhh---hhHHH
Q 004918          439 DRIIGAHFFSPAHVMPL---------LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN----CTGFAVNRA---FFPYS  502 (724)
Q Consensus       439 ~r~ig~h~~~p~~~~~l---------veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d----~pG~i~nRl---~~~~~  502 (724)
                      .-.++.   +|-...+.         --++-| .+++++.+.+..+++.+....+++..    ..-++.|-+   -.+++
T Consensus       167 ~f~v~~---~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~  242 (444)
T 3vtf_A          167 KFSVAS---NPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA  242 (444)
T ss_dssp             CCEEEE---CCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceeec---CcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence            112221   33333222         012323 24678888999999988776655532    222444533   25889


Q ss_pred             HHHHHHHHc-CCCHHHHHHHH-H--hcCC
Q 004918          503 QSARLLVSL-GVDVFRIDSAI-R--SFGL  527 (724)
Q Consensus       503 ~Ea~~l~~~-Gv~~~~ID~a~-~--~~g~  527 (724)
                      ||...+.+. |+++.+|-+++ .  .+|+
T Consensus       243 NEla~ice~~GiDv~eV~~a~~~d~rig~  271 (444)
T 3vtf_A          243 NEVGLLAKRLGVDTYRVFEAVGLDKRIGR  271 (444)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHTSTTSCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHhccCCCCCC
Confidence            998877766 99999988887 3  4553

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.19  E-value=1.4e-11  Score=122.92  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=100.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .++||+|||+|.||..++..|++.|++|+++|++++.++...           +.|             +..++..+.++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~   82 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVTFQEEAVS   82 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEEEHHHHTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CceecHHHHHh
Confidence            456899999999999999999999999999999998765431           111             22222225578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh----------cccCCCCCEEEEecCCCCC-----
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----------EKTSSQDRIIGAHFFSPAH-----  451 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~----------~~~~~~~r~ig~h~~~p~~-----  451 (724)
                      ++|+||.|+|.  .....+++ +.+.. ++++|++.+++.+.+.+.          ..+. ..+++.. + ++..     
T Consensus        83 ~~DvVi~av~~--~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~-~-n~~~~~~~~  155 (215)
T 2vns_A           83 SPEVIFVAVFR--EHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKA-F-NVISAWTLQ  155 (215)
T ss_dssp             SCSEEEECSCG--GGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEE-C-TTBCHHHHH
T ss_pred             CCCEEEECCCh--HHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEec-c-ccccHhHhc
Confidence            99999999994  33445554 55555 788898888888765542          2232 2345442 1 2211     


Q ss_pred             ----CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       452 ----~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                          .++...++.+  .+++.++.++++++.+|+.++++++
T Consensus       156 ~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          156 AGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             TCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence                1111122332  2799999999999999999999876

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.19  E-value=3.3e-11  Score=130.32  Aligned_cols=168  Identities=13%  Similarity=0.067  Sum_probs=105.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      |+||+|||+|.||.++|..|+++|++|++||+++++++...+...       ....+..   ......+..+++. ++++
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~   84 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRE-------NVLFLKG---VQLASNITFTSDVEKAYN   84 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTB-------CTTTSTT---CBCCTTEEEESCHHHHHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCc-------ccccccc---cccccceeeeCCHHHHHc
Confidence            459999999999999999999999999999999988776533100       0000000   0001234555565 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHH----HHhhCCC-CcEEEecCCCCCHHH---HhcccCC--CC-CEEEEecCCCCCC---
Q 004918          387 DVDMVIEAVIESVPLKQKIFSE----LEKACPP-HCILATNTSTIDLNI---VGEKTSS--QD-RIIGAHFFSPAHV---  452 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~----l~~~~~~-~~ii~s~ts~~~~~~---~~~~~~~--~~-r~ig~h~~~p~~~---  452 (724)
                      +||+||+|||  .....+++.+    +.+.+++ +++|++.++++.+..   +...+..  +. .+.  ....|...   
T Consensus        85 ~aDvVilav~--~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~--v~~gp~~~~~~  160 (366)
T 1evy_A           85 GAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLS--VLAGPSFAIEV  160 (366)
T ss_dssp             TCSSEEECCC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEE--EEESSCCHHHH
T ss_pred             CCCEEEECCC--hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEE--EEeCCChHHHH
Confidence            9999999999  5777888888    8888888 888887776665431   1111111  11 111  01122211   


Q ss_pred             --CCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCC
Q 004918          453 --MPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT  490 (724)
Q Consensus       453 --~~lveii~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~p  490 (724)
                        +....++.+ ..+++..+.+.+++...  |..+++..+..
T Consensus       161 ~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~  201 (366)
T 1evy_A          161 ATGVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDTV  201 (366)
T ss_dssp             HTTCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHH
T ss_pred             HhCCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCch
Confidence              111112222 23678899999999999  77766666643

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.17  E-value=2.7e-11  Score=128.03  Aligned_cols=123  Identities=20%  Similarity=0.302  Sum_probs=90.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      ++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.+...            ....++..++++++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~   71 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA------------YSNCKVSGSNTYDDLA   71 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH------------TCCCCEEEECCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhc------------CCCcEEEECCCHHHhC
Confidence            4699999999999999999999999 99999999998876544444332211            1124577778889999


Q ss_pred             CCCEEEEcc--cCCh-----------------HHHHHHHHHHHhhCCCCcEE--EecCCCCCHHHHhcccC--CCCCEEE
Q 004918          387 DVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIG  443 (724)
Q Consensus       387 ~aDlVIeav--~e~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~--~~~r~ig  443 (724)
                      +||+||+++  |++.                 .+++++++++.+++ +++++  +||++... +.+.....  +|.|++|
T Consensus        72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG  149 (322)
T 1t2d_A           72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG  149 (322)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred             CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence            999999998  6532                 47899999999998 56654  46655543 34443333  5677777


Q ss_pred             E
Q 004918          444 A  444 (724)
Q Consensus       444 ~  444 (724)
                      +
T Consensus       150 ~  150 (322)
T 1t2d_A          150 L  150 (322)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.14  E-value=6.7e-11  Score=137.38  Aligned_cols=95  Identities=17%  Similarity=0.220  Sum_probs=88.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHHHHHHHHHhCCC--CCCCcHH
Q 004918          492 FAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPD--RSFQSPL  563 (724)
Q Consensus       492 ~i~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~g~~~---Gp~~~~D~~Gld~~~~~~~~l~~~~~~--~~~~~~~  563 (724)
                      -+..|++.+++||+.+++++|+  ++.|||.++ .|+|||.   |||+++|.+|++.+...++.+...+++  ++.|+++
T Consensus       637 ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~  716 (742)
T 3zwc_A          637 EILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDY  716 (742)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHH
Confidence            4788999999999999999997  899999999 9999998   999999999999999999999999997  3449999


Q ss_pred             HHHHHHcCCCCcccCccceeccC
Q 004918          564 VDLLLKSGRNGKANGKGLYTYEK  586 (724)
Q Consensus       564 l~~~v~~g~~G~k~g~Gfy~y~~  586 (724)
                      |++|+++|....+.++|||.+.+
T Consensus       717 L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          717 LRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             HHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHcCCCcccccccccCCCC
Confidence            99999999998889999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.14  E-value=3.9e-11  Score=127.35  Aligned_cols=123  Identities=21%  Similarity=0.263  Sum_probs=90.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  385 (724)
                      .+||+|||+|.||.++|..|+..|+ +|++||++++.++.....+.+.+...   +         ...++..+++++ ++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~   76 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAAL   76 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHh
Confidence            3589999999999999999999998 99999999998887544444433211   1         124677778885 89


Q ss_pred             CCCCEEEEcc--cCCh-----------------HHHHHHHHHHHhhCCCCcEE--EecCCCCCHHHHhcccC--CCCCEE
Q 004918          386 KDVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRII  442 (724)
Q Consensus       386 ~~aDlVIeav--~e~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~--~~~r~i  442 (724)
                      ++||+||+++  |++.                 .+++++++++.+++ |++++  +||++... +.+.....  +|.|++
T Consensus        77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi  154 (331)
T 1pzg_A           77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC  154 (331)
T ss_dssp             TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence            9999999999  7543                 35889999999998 56665  46665543 34433332  567887


Q ss_pred             EE
Q 004918          443 GA  444 (724)
Q Consensus       443 g~  444 (724)
                      |+
T Consensus       155 G~  156 (331)
T 1pzg_A          155 GM  156 (331)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.13  E-value=5.4e-11  Score=127.96  Aligned_cols=171  Identities=16%  Similarity=0.045  Sum_probs=108.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALK  374 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~  374 (724)
                      .++||+|||+|.||+++|..|+++|       ++|++||++++     ..+...+...+  ..+. .+.       ....
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~--~~~~-~~~-------~~~~   76 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN--VKYL-PGH-------KLPP   76 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCC--TTTS-TTC-------CCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcc--cccC-Ccc-------cCcc
Confidence            3468999999999999999999999       99999999988     65543211000  0000 000       0012


Q ss_pred             CcccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--------HH-HhcccCCCCCEEEE
Q 004918          375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NI-VGEKTSSQDRIIGA  444 (724)
Q Consensus       375 ~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--------~~-~~~~~~~~~r~ig~  444 (724)
                      ++..+++. +++++||+||+|||  .....++++++.+.++++++|++.++++.+        .+ +...+..+ ..+-.
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~--~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVP--HQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLM  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCC--GGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEE
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCC--HHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEE
Confidence            35555666 45789999999999  467889999999999999999988877653        11 12222211 11111


Q ss_pred             ecCCCCC--CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          445 HFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       445 h~~~p~~--~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      .+..+..  .+....++.+ ..+++..+.+.+++...|..+.+..|..+
T Consensus       154 gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~  201 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDT  201 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHH
T ss_pred             CCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchH
Confidence            1211111  1111112222 24688899999999999988877777544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.12  E-value=5.2e-11  Score=124.17  Aligned_cols=168  Identities=10%  Similarity=-0.052  Sum_probs=108.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||+.+|..|+++|++|++||++++.++..           ...+...    ......+. .++.+.++++|
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~----~~~~~~~~-~~~~~~~~~~d   65 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG----SIFNESLT-ANDPDFLATSD   65 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS----CEEEEEEE-ESCHHHHHTCS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCC----ceeeeeee-ecCccccCCCC
Confidence            79999999999999999999999999999998653321           1111000    00000111 23345678999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEE-EEecCCCCCCCC-e-------eeEe
Q 004918          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFFSPAHVMP-L-------LEIV  459 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~i-g~h~~~p~~~~~-l-------veii  459 (724)
                      +||.|+|..  ...++++++.+.++++++|++.++++... .+.+.+.  . ++ |.+++.....+| .       +.+.
T Consensus        66 ~vi~~v~~~--~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p~~~~~~~g~~~i~  140 (291)
T 1ks9_A           66 LLLVTLKAW--QVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGNVIIHVANGITHIG  140 (291)
T ss_dssp             EEEECSCGG--GHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETTEEEEEECCCEEEE
T ss_pred             EEEEEecHH--hHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCCEEEEecccceEEc
Confidence            999999954  46788899999999999888877776553 3444332  2 44 444321111111 1       1122


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhh
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF  499 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~  499 (724)
                      ... .+++.++.+.++++.+|..+++.++..+...+.+..
T Consensus       141 ~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~  179 (291)
T 1ks9_A          141 PAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAV  179 (291)
T ss_dssp             ESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHH
T ss_pred             cCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHee
Confidence            212 245678889999999999888888766666665543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.11  E-value=6.6e-10  Score=121.29  Aligned_cols=196  Identities=18%  Similarity=0.187  Sum_probs=122.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh----hcCcccccCc-cC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY-SE  384 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~~-~~  384 (724)
                      ||+|||+|.||.++|..|++ |++|++||+++++++...+..          ..+........    ..++.++++. ++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~l~~t~~~~~~   70 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGL----------SPIQDEYIEYYLKSKQLSIKATLDSKAA   70 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCC----------CCcCCCCHHHHHHhccCcEEEeCCHHHH
Confidence            79999999999999999999 999999999999877643210          01111111111    1245666776 56


Q ss_pred             cCCCCEEEEcccCCh---------HHHHHHHHHHHhhCCCCcEEEe-cCCCCCH-HHHhcccCCCCCEEEEecCCCCCCC
Q 004918          385 FKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILAT-NTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHVM  453 (724)
Q Consensus       385 ~~~aDlVIeav~e~~---------~~k~~v~~~l~~~~~~~~ii~s-~ts~~~~-~~~~~~~~~~~r~ig~h~~~p~~~~  453 (724)
                      +++||+||.|||...         ....++++.+.+ ++++++|+. +|.+... ..+...+...  .+...   |....
T Consensus        71 ~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~---Pe~~~  144 (402)
T 1dlj_A           71 YKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFS---PEFLR  144 (402)
T ss_dssp             HHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEEC---CCCCC
T ss_pred             hcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEEC---Ccccc
Confidence            889999999999753         156778888888 788888775 3433333 2444444322  22222   22221


Q ss_pred             Ce------e---eEecCCCCC-----HHHHHHHHHHHHH-cCC-e-eEEEcCCC-----chhhhhh---hhHHHHHHHHH
Q 004918          454 PL------L---EIVRTERTS-----AQVILDLMTVGKI-IKK-V-PVVVGNCT-----GFAVNRA---FFPYSQSARLL  508 (724)
Q Consensus       454 ~l------v---eii~~~~t~-----~e~~~~~~~l~~~-lGk-~-~v~v~d~p-----G~i~nRl---~~~~~~Ea~~l  508 (724)
                      +.      .   .++-|....     .+..+.+.+++.. ..+ . ++++++..     .++.|-+   ..+++||+..+
T Consensus       145 ~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l  224 (402)
T 1dlj_A          145 ESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTY  224 (402)
T ss_dssp             TTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11      1   133333221     1556777777765 332 2 56665522     2344543   24778999888


Q ss_pred             HHc-CCCHHHHHHHH
Q 004918          509 VSL-GVDVFRIDSAI  522 (724)
Q Consensus       509 ~~~-Gv~~~~ID~a~  522 (724)
                      .+. |+++.++-.++
T Consensus       225 ~~~~Gid~~~v~~~~  239 (402)
T 1dlj_A          225 AESRKLNSHMIIQGI  239 (402)
T ss_dssp             HHHTTCCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHh
Confidence            876 99999998888

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.08  E-value=5.4e-10  Score=119.19  Aligned_cols=159  Identities=13%  Similarity=0.042  Sum_probs=94.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      .||+|||+|.||+.+|..|+++|++|++|||++++++...+...+   .+. .+. .       + .+..+++.++++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~---~~~-~~~-~-------~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTS---PYV-EES-K-------I-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCB---TTB-TTC-C-------C-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCc---ccC-CCC-e-------e-eEEEeCCHHHhcCC
Confidence            589999999999999999999999999999999887664321000   000 000 0       0 34455666448899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH---HhcccC--CCCC-EEEEecCCCCC--CCCeeeEec
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--SQDR-IIGAHFFSPAH--VMPLLEIVR  460 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~~--~~~r-~ig~h~~~p~~--~~~lveii~  460 (724)
                      |+||.|||  .....+++.++.+   ++++|++.+.++...+   +++.+.  .+.. .+-.-+..+..  .+....++.
T Consensus        82 DvVil~vk--~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~  156 (335)
T 1z82_A           82 DILVIAIP--VQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL  156 (335)
T ss_dssp             EEEEECSC--GGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEE
T ss_pred             CEEEEECC--HHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEE
Confidence            99999999  4566667666544   6777777665544321   111111  0111 11111211110  121112222


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNC  489 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  489 (724)
                      +.. +   .+.+.+++...|..+.+..|.
T Consensus       157 g~~-~---~~~~~~ll~~~g~~~~~~~di  181 (335)
T 1z82_A          157 AGE-N---SKELQKRISTEYFRVYTCEDV  181 (335)
T ss_dssp             EET-T---HHHHHHHHCCSSEEEEEESCH
T ss_pred             Eeh-h---HHHHHHHhCCCCEEEEecCch
Confidence            221 2   678899999999887776664

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.07  E-value=1.1e-10  Score=123.43  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=105.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+.+.+. ..  .          ..++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~--~----------~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT--R----------RANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS--C----------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc--C----------CcEEEe-CCHHHhC
Confidence            389999999999999999999999  999999999887765433332221 00  0          123333 3577899


Q ss_pred             CCCEEEEcccCC--------------hHHHHHHHHHHHhhCCCCcEEE--ecCCCCCHHHHhccc-C-CCCCEEEEecCC
Q 004918          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKT-S-SQDRIIGAHFFS  448 (724)
Q Consensus       387 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~-~-~~~r~ig~h~~~  448 (724)
                      +||+||++++..              ..+++++++++.+++ ++++++  ||++... +.+.... . .+.|++|+    
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence            999999999852              246788999999987 455443  4444332 3333222 2 56677776    


Q ss_pred             CCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhh---hhhhHHHH
Q 004918          449 PAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN---RAFFPYSQ  503 (724)
Q Consensus       449 p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~n---Rl~~~~~~  503 (724)
                                    .|.-++......+.+.+|..+   ++.++++.+   ..++++++
T Consensus       141 --------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v~G~hg~~~~p~~s  181 (319)
T 1a5z_A          141 --------------GTVLDTARLRTLIAQHCGFSP---RSVHVYVIGEHGDSEVPVWS  181 (319)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHTCCG---GGEECCEEBCSSTTCEECGG
T ss_pred             --------------CccHHHHHHHHHHHHHhCcCH---HHceEEEEeCCCCCcccchh
Confidence                          355666777777778888554   455566665   44444444

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.06  E-value=2.1e-10  Score=124.32  Aligned_cols=170  Identities=11%  Similarity=-0.033  Sum_probs=108.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  375 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~  375 (724)
                      |+||+|||+|.||+++|..|+++|       ++|++||++++     .++...+..       .....+..   .....+
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~~~~~~---~~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKH-------ENTKYLKG---VPLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHC-------BCTTTSTT---CBCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcC-------cccccCCc---ccCcCC
Confidence            468999999999999999999999       99999999987     554432210       00000000   001124


Q ss_pred             cccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHh----hCCCCcEEEecCCCCCH--------HHH-hcccCCCCCE
Q 004918          376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK----ACPPHCILATNTSTIDL--------NIV-GEKTSSQDRI  441 (724)
Q Consensus       376 i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~----~~~~~~ii~s~ts~~~~--------~~~-~~~~~~~~r~  441 (724)
                      +..+++. +++++||+||+|||  .....+++.++.+    .++++++|++.++++.+        ++. ......+ ..
T Consensus        91 i~~~~~~~ea~~~aDvVilav~--~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~  167 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVP--CQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CS  167 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCC--HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EE
T ss_pred             eEEECCHHHHHcCCCEEEEcCC--HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EE
Confidence            5556666 55789999999999  6788899999988    88899999988877654        111 1222111 11


Q ss_pred             EEEecCCCC--CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004918          442 IGAHFFSPA--HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  491 (724)
Q Consensus       442 ig~h~~~p~--~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG  491 (724)
                      +-..+..+.  ..+....++.+ ..+++..+.+++++...|..+.+..|..|
T Consensus       168 v~~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~  218 (375)
T 1yj8_A          168 ALSGANIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIE  218 (375)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred             EEeCCchHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            111111110  01111122222 23678899999999999988888787654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.06  E-value=2.5e-10  Score=123.47  Aligned_cols=155  Identities=10%  Similarity=0.021  Sum_probs=109.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC------CCcEEEEeCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN------NIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      ++||+|||+|.||.++|..|.++      |++|++.+++.+ ..+.+           .+.|....        .-...+
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~--------d~ta~s  114 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE--------SGTLGD  114 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT--------TTCEEE
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe--------cCCCCC
Confidence            47999999999999999999999      999988776543 22222           12221100        000112


Q ss_pred             CccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhc---ccCCCCCEEEEecCCCCCC-----
Q 004918          381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHV-----  452 (724)
Q Consensus       381 ~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~---~~~~~~r~ig~h~~~p~~~-----  452 (724)
                      ..+++++||+||.++|  .....+++.++.+.++++++| +...++.+..+..   .......++.+||..|.+.     
T Consensus       115 ~aEAa~~ADVVILaVP--~~~~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y  191 (525)
T 3fr7_A          115 IWETVSGSDLVLLLIS--DAAQADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY  191 (525)
T ss_dssp             HHHHHHHCSEEEECSC--HHHHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHH
T ss_pred             HHHHHhcCCEEEECCC--hHHHHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHH
Confidence            2267889999999999  454557889999999999985 7788888877664   3333457999999988875     


Q ss_pred             --C-----Ceee--EecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004918          453 --M-----PLLE--IVRTERTSAQVILDLMTVGKIIKKVPV  484 (724)
Q Consensus       453 --~-----~lve--ii~~~~t~~e~~~~~~~l~~~lGk~~v  484 (724)
                        +     ..+.  +..+...+.+..+.+..++..+|...+
T Consensus       192 ~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          192 VQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             hcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence              1     1222  233445677889999999999998754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.05  E-value=3.9e-10  Score=119.15  Aligned_cols=169  Identities=11%  Similarity=-0.013  Sum_probs=104.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHhhcCccccc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-----N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVL  380 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-----G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~  380 (724)
                      .+||+|||+|.||+.+|..|+++     | ++|++|+| +++++...+.          .|..... .-......+..++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~   76 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVTD   76 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEec
Confidence            35899999999999999999999     9 99999999 7665553220          1100000 0000001123334


Q ss_pred             CccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEEEEecCCCCCC-------
Q 004918          381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHV-------  452 (724)
Q Consensus       381 ~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~h~~~p~~~-------  452 (724)
                      +.+.+.++|+||.||+...  ..++++++.+.++++++|++.+.++... .+.+.+....-+.|+.+...+..       
T Consensus        77 ~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~  154 (317)
T 2qyt_A           77 NPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITL  154 (317)
T ss_dssp             CHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEE
T ss_pred             CccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEE
Confidence            5556789999999998543  4788889988888888888877777763 45555543221223332211111       


Q ss_pred             -CCeeeE-ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004918          453 -MPLLEI-VRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (724)
Q Consensus       453 -~~lvei-i~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d~p  490 (724)
                       .....+ +..  ...+++.+ .+.+++...|..+.+.++.-
T Consensus       155 ~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~  195 (317)
T 2qyt_A          155 EADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDID  195 (317)
T ss_dssp             EEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHH
T ss_pred             cCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHH
Confidence             111112 322  33457777 89999999998877666643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.03  E-value=1.4e-09  Score=115.13  Aligned_cols=174  Identities=14%  Similarity=0.079  Sum_probs=115.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .++||+|||+|.||+.+|..|+++|++|++| ++++.++...+.-   +  .......      .....+..+++.+.++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g---~--~~~~~~~------~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATG---L--RLETQSF------DEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHC---E--EEECSSC------EEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCC---e--EEEcCCC------cEEEeeeeeCCHHHcC
Confidence            3579999999999999999999999999999 9988877654310   0  0000000      0112455566777788


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEEEEe------cCCCCCC---CCee
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH------FFSPAHV---MPLL  456 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~h------~~~p~~~---~~lv  456 (724)
                      ++|+||.|||  ....+++++++.+.++++++|++.++++... .+.+.++  .++++..      ...|-..   ... 
T Consensus        86 ~~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g-  160 (318)
T 3hwr_A           86 GADLVLFCVK--STDTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRG-  160 (318)
T ss_dssp             TCSEEEECCC--GGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEE-
T ss_pred             CCCEEEEEcc--cccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCc-
Confidence            9999999999  4466889999999999999999999999884 4555554  4454321      1112111   111 


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~  500 (724)
                      .+.-+.   .+..+.+.+++...|..+.+..|.-+.....++..
T Consensus       161 ~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N  201 (318)
T 3hwr_A          161 ELVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILN  201 (318)
T ss_dssp             EEEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             eEEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHH
Confidence            111122   23456788888888888777778777666655443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.03  E-value=1.6e-10  Score=120.79  Aligned_cols=122  Identities=22%  Similarity=0.292  Sum_probs=83.0

Q ss_pred             CCCCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          304 KPRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       304 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      ..++++||+|||+|.||.++|..++..|+  +|+++|++++....+.+ +..     .            ...++..+++
T Consensus        10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~d-l~~-----~------------~~~~i~~t~d   71 (303)
T 2i6t_A           10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMD-LEI-----F------------NLPNVEISKD   71 (303)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHH-HHH-----H------------TCTTEEEESC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHH-Hhh-----h------------cCCCeEEeCC
Confidence            34567899999999999999999999999  99999999863222221 111     0            0125666778


Q ss_pred             ccCcCCCCEEEEcc-------------cCChHHHHHHHHHHHhhCCCCcEE--EecCCCCCHHHHhcccC-CCCCEEEE
Q 004918          382 YSEFKDVDMVIEAV-------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       382 ~~~~~~aDlVIeav-------------~e~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      ++++++||+||+++             .++..+++++++++.+++ ++++|  +||++......+..... .+.|++|+
T Consensus        72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            89999999999997             889999999999999998 56655  46644322222222222 35677776

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.02  E-value=4.5e-10  Score=119.65  Aligned_cols=162  Identities=14%  Similarity=0.056  Sum_probs=103.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHhhcCccccc--Cc-c
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL--DY-S  383 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~--~~-~  383 (724)
                      ||+|||+|.||+.+|..|+++|++|++||+  +++.++...+           .+. +... . . ...+..++  +. +
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~g-~-~-~~~~~~~~~~~~~~   67 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-----------GREHPRLG-V-K-LNGVEIFWPEQLEK   67 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-----------TCCBTTTT-B-C-CCSEEEECGGGHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH-----------hCcCcccC-c-c-ccceEEecHHhHHH
Confidence            799999999999999999999999999999  8887665422           111 0000 0 0 01233344  44 4


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC---C---HHHHhcccCC--CCCEEEEecCCCCCC---
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---D---LNIVGEKTSS--QDRIIGAHFFSPAHV---  452 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~---~---~~~~~~~~~~--~~r~ig~h~~~p~~~---  452 (724)
                      .++++|+||.|||  .....+++.++.+ ++++++|++.+.++   +   ...+.+.+..  +..........|...   
T Consensus        68 ~~~~~D~vi~~v~--~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~  144 (335)
T 1txg_A           68 CLENAEVVLLGVS--TDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV  144 (335)
T ss_dssp             HHTTCSEEEECSC--GGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred             HHhcCCEEEEcCC--hHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence            5789999999999  4467788899988 88899888776565   2   2344443332  110001111223221   


Q ss_pred             --CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004918          453 --MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC  489 (724)
Q Consensus       453 --~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  489 (724)
                        +....++.+. .+++..+.+.++++..|..+.+..|.
T Consensus       145 ~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di  182 (335)
T 1txg_A          145 AKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDI  182 (335)
T ss_dssp             HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred             HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCch
Confidence              1111233332 36888999999999999887777764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.95  E-value=5.9e-10  Score=117.20  Aligned_cols=99  Identities=14%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...            ......++..+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            589999999999999999999997 999999999877643222211110            0111235666778899999


Q ss_pred             CCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       388 aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      ||+||+++              .++..+++++++++.+++ ++++++
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi  116 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVII  116 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEE
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence            99999997              344578889999999987 666553

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.47  E-value=9.6e-11  Score=115.31  Aligned_cols=148  Identities=14%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||+|.||..+|..|.+.|++|++|||+++ .+...           ..+             +...+..+.++++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~a   74 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASRS   74 (201)
Confidence            5799999999999999999999999999999876 32211           111             1122223567899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--------HHHhcccCCCCCEEEEecCCCCCCCC-ee---
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIVGEKTSSQDRIIGAHFFSPAHVMP-LL---  456 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--------~~~~~~~~~~~r~ig~h~~~p~~~~~-lv---  456 (724)
                      |+||.|+|..  ....++ ++.. ..++++|++.+++.+.        ..+.+.+.. .+++...++.|..... ..   
T Consensus        75 DvVilav~~~--~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g  149 (201)
T 2yjz_A           75 DVIVLAVHRE--HYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDA  149 (201)
Confidence            9999999943  344555 4544 3467788777777653        333333322 3444444444433322 11   


Q ss_pred             ---eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          457 ---EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       457 ---eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                         .++.+.  +++..+.+.++++.+|+.++.+++
T Consensus       150 ~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          150 SRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence               233443  578899999999999999998876

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.92  E-value=4.2e-09  Score=112.26  Aligned_cols=170  Identities=12%  Similarity=0.140  Sum_probs=106.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++||+|||+|.||+.+|..|+++|++|++|+|+ +..+...           +.|......-......+..+++.+++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            468999999999999999999999999999996 4444322           1111000000001123444566666789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC-------------------HH-HHhcccCCCCCEEE-Eec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-------------------LN-IVGEKTSSQDRIIG-AHF  446 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-------------------~~-~~~~~~~~~~r~ig-~h~  446 (724)
                      +|+||.|||  .....++++++.+.++++++|++.+.+++                   .. .+.+.++ ..++++ +-+
T Consensus        71 ~D~Vilavk--~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVK--APALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCC--HHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEEC
T ss_pred             CCEEEEeCC--chhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEE
Confidence            999999999  56667888899999999999988777753                   11 2333332 234443 222


Q ss_pred             C-----CCCCC---CCe-eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch
Q 004918          447 F-----SPAHV---MPL-LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  492 (724)
Q Consensus       447 ~-----~p~~~---~~l-veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~  492 (724)
                      +     .|-..   ... +.+-.....+.+..+.+.+++...|....+..|.-+.
T Consensus       148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~  202 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRD  202 (335)
T ss_dssp             CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHH
T ss_pred             EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHH
Confidence            1     11110   000 1111112234577788889999988887776776553

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.90  E-value=1.2e-08  Score=107.53  Aligned_cols=176  Identities=13%  Similarity=0.060  Sum_probs=111.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.||+.+|..|+++|++|++|+|++  .+...           +.|.. ....-...+..+..+++.+.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            589999999999999999999999999999986  23321           11110 00000000012344556666789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhcccCCCCCEEEEe-c-----CCCC---CCCCe-e
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH-F-----FSPA---HVMPL-L  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h-~-----~~p~---~~~~l-v  456 (724)
                      +|+||.||+  .....++++++.+.+.++++|++...++.. +.+.+.++. .++++.- +     ..|-   +..+. +
T Consensus        70 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLK--TFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCC--GGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecC--CCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            999999998  666678999999999999999998999874 445555432 3444322 1     1121   11111 1


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhH
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~  500 (724)
                      .+-..+..+.+..+.+.+++...|....+..|.-+.....++..
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N  190 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWN  190 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHH
Confidence            12222334567788889999998887776677655555544433

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.87  E-value=8e-09  Score=101.83  Aligned_cols=141  Identities=17%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++..+.+.+.+.|..++.++.++.|+|.  +-|      +++.                ....++ +.|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG------G~v~----------------a~~~I~-~~i~~~~~pV~~~   91 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPG------GSIS----------------AGMAIY-DTMVLAPCDIATY   91 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHCSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            48889999999999999877767766662  333      2221                122445 6688899999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchh------------------hhhcccc--cHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLV--GLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~------------------~~l~r~~--G~~~a~~l  162 (724)
                      +.|.|..+|..++++||.  |++.+++.+++....-|.   .|-.                  ..+.+..  ......++
T Consensus        92 v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  168 (208)
T 2cby_A           92 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD  168 (208)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             ECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999998  999999999987654221   1110                  1122222  33446678


Q ss_pred             HHcCCCCCHHHHHHCCCcceecC-cchHHHHH
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVT-SEELLKVS  193 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~-~~~l~~~a  193 (724)
                      +..|..++++||+++||||++.+ .+++++..
T Consensus       169 ~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~  200 (208)
T 2cby_A          169 SDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ  200 (208)
T ss_dssp             HHTTCEEEHHHHHHHTSCSEECSCC-------
T ss_pred             HhCCcEEcHHHHHHcCCCcEecCchHHHHHHH
Confidence            88999999999999999999985 45555443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.86  E-value=1.8e-09  Score=113.24  Aligned_cols=120  Identities=20%  Similarity=0.295  Sum_probs=80.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.||.++|..++.+|+  +|+++|+++++++.....+        .... .   .. ...++.. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l--------~~~~-~---~~-~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDI--------AHAA-P---VS-HGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------TTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhh--------hhhh-h---hc-CCeEEEE-CCHHHhC
Confidence            489999999999999999999999  9999999988665322111        1110 0   00 0012332 5678899


Q ss_pred             CCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCcEEE--ecCCCCCHHHHhcccCCCCCEEEE
Q 004918          387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSSQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~~~~~r~ig~  444 (724)
                      +||+||+++  |.            +..+++++++++.+++ ++++++  ||++......+.... .++|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  32            4457789999999986 666553  555444333333433 67787775

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.82  E-value=7.7e-09  Score=108.50  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             CCCCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC--HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          304 KPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       304 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      |.++.+||+|||+|.||.++|..++..|+ +|+++|++  ++.++.....+....            .......++..++
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~   71 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTS   71 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEES
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcC
Confidence            44456799999999999999999999999 99999999  444433222222110            0111124577778


Q ss_pred             CccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          381 DYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       381 ~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +++++++||+||+++.-              +..+.+++.+.+.++++ +++++..|
T Consensus        72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvvs  127 (315)
T 3tl2_A           72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIVVLT  127 (315)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECC
T ss_pred             CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEECC
Confidence            89999999999999721              33466777788888874 55554333

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.79  E-value=2e-08  Score=106.16  Aligned_cols=174  Identities=16%  Similarity=0.096  Sum_probs=107.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhH-hcCCCCHHHHHHhhcCcccccCccCcC-
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV-TRGKLTQDKANNALKMLKGVLDYSEFK-  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~-  386 (724)
                      +||+|||+|.||+.+|..|+++|++|++|+|++.  +...+.   .+.-.. ..|..+       +..+..+++.+.+. 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~---Gl~~~~~~~g~~~-------~~~~~~~~~~~~~~~   70 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAK---GIRIRSATLGDYT-------FRPAAVVRSAAELET   70 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHH---CEEEEETTTCCEE-------ECCSCEESCGGGCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhC---CcEEeecCCCcEE-------EeeeeeECCHHHcCC
Confidence            5899999999999999999999999999999862  332110   000000 011100       01234456665554 


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhcccCCCCCEEEE-ecC-----CCCCC---CCe-
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGA-HFF-----SPAHV---MPL-  455 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~-h~~-----~p~~~---~~l-  455 (724)
                      ++|+||.|||.  ....++++++.+.++++++|++...++.. ..+.+.++.. ++++. -++     .|-.+   .+. 
T Consensus        71 ~~DlVilavK~--~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~~  147 (320)
T 3i83_A           71 KPDCTLLCIKV--VEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYGR  147 (320)
T ss_dssp             CCSEEEECCCC--CTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEecCC--CChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCCE
Confidence            89999999984  33457888999999999998888888764 5565555432 44432 221     12111   111 


Q ss_pred             eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhh
Q 004918          456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  497 (724)
Q Consensus       456 veii~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl  497 (724)
                      +.+-.....+.+..+.+.+++..-|....+..|.-+.....+
T Consensus       148 ~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  189 (320)
T 3i83_A          148 LMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKC  189 (320)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHH
T ss_pred             EEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHH
Confidence            112122233456788889999998888777677555444444

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.78  E-value=9.5e-09  Score=107.78  Aligned_cols=120  Identities=13%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ||+|||+|.||.++|..++..|+ +|+++|+++++++....++.+....   .+         ...++..+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE---LG---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH---HT---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh---cC---------CCeEEEECCCHHHhCCC
Confidence            79999999999999999999888 7999999998876433322221100   00         01346666788999999


Q ss_pred             CEEEEc--------------ccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhccc----C-CCCCEEEE
Q 004918          389 DMVIEA--------------VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  444 (724)
Q Consensus       389 DlVIea--------------v~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~----~-~~~r~ig~  444 (724)
                      |+||++              +..+..+++++.+++.+++ |+++++..  +.|+..+....    . .+.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVIT--TNPVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC--CSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--CCchHHHHHHHHHhcCCChhhEEEe
Confidence            999999              4456678899999999997 55544322  22554444332    1 24566664

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.78  E-value=1e-08  Score=107.83  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=74.1

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+... ...           ...++..++++++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~~-----------~~~~v~~t~d~~a   72 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VDG-----------FDAKFTGANDYAA   72 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HHT-----------CCCCEEEESSGGG
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hcC-----------CCCEEEEeCCHHH
Confidence            456799999999999999999999999 999999999887643333332211 000           0134666778899


Q ss_pred             cCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       385 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++||+||.++.-              +..+.+++.+.+.+++ |+++++.
T Consensus        73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iiv  122 (324)
T 3gvi_A           73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVIC  122 (324)
T ss_dssp             GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEe
Confidence            9999999999731              3456667777888887 5665543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.76  E-value=6.3e-09  Score=108.89  Aligned_cols=92  Identities=18%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHH------HHHHHHhhhCC
Q 004918          619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYT------SLKKWSQLYGN  692 (724)
Q Consensus       619 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~------~~~~~~~~~~~  692 (724)
                      +++||.||++.++++||++++++|++ |++|||.++..|+|+|...-|||+++|+.|.+....      .++.+...++.
T Consensus       190 ~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
T 3ado_A          190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYCDRYSEGMKRVLKSFGS  268 (319)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHHHHHHhhHhHHHHHHHcCc
Confidence            68999999999999999999999999 999999999999998733349999999999765432      23333343332


Q ss_pred             CCCCCHHHHHHH-HcCCCCCCCC
Q 004918          693 FFKPSRFLEERA-TKGIPLSAPV  714 (724)
Q Consensus       693 ~~~p~~~l~~~~-k~g~gfy~~~  714 (724)
                         .+++-.++. |.++|||.+.
T Consensus       269 ---~p~~~~~~~~k~~~g~~~~~  288 (319)
T 3ado_A          269 ---IPEFSGATVEKVNQAMCKKV  288 (319)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHS
T ss_pred             ---ccccchHHHHHHHHHHhhcC
Confidence               222222333 4568888773

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.76  E-value=7.6e-09  Score=108.56  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=76.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      +.+||+|||+|.||.++|..++..|+  +|+++|++++.++.....+.+....    .         ...++..++++++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~----~---------~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLF----L---------HTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGG----S---------CCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhc----c---------cCCeEEEcCCHHH
Confidence            56899999999999999999999998  9999999998876654444332110    0         1235666788988


Q ss_pred             cCCCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          385 FKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       385 ~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++||+||++.              .++..+++++.+++.+++ |+++++.
T Consensus        87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilv  136 (330)
T 3ldh_A           87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKEL  136 (330)
T ss_dssp             CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEe
Confidence            99999999874              345678888999999995 5565543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.74  E-value=1.3e-08  Score=107.11  Aligned_cols=126  Identities=17%  Similarity=0.339  Sum_probs=81.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      |+++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...   .         .....++..++++++
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~---~---------~~~~~~v~~t~d~~a   70 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP---I---------EGVDFKVRGTNDYKD   70 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH---H---------HTCCCCEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh---h---------cCCCcEEEEcCCHHH
Confidence            345799999999999999999999998 999999999876543322221110   0         000124555677899


Q ss_pred             cCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCC--CCCHHHHhcccC-CCCCEEEE
Q 004918          385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS--TIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       385 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      +++||+||.+..-              +..+.+++.+.+.+++ |+++++..|.  ......+..... .+.|++|+
T Consensus        71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~  146 (321)
T 3p7m_A           71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGM  146 (321)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEee
Confidence            9999999999631              3456777778888888 5555543322  221122222223 33677775

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.73  E-value=2.6e-08  Score=104.74  Aligned_cols=122  Identities=18%  Similarity=0.259  Sum_probs=79.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (724)
                      |+||+|||+|.||.++|..|+++|  ++|++||+++++++.....+.+...   ..+           ..+.. ++++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~   66 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAA   66 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHH
Confidence            368999999999999999999999  7999999999887765433321110   000           11222 456688


Q ss_pred             cCCCCEEEEcccCCh------------------HHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHhccc--CCCCCEEE
Q 004918          385 FKDVDMVIEAVIESV------------------PLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT--SSQDRIIG  443 (724)
Q Consensus       385 ~~~aDlVIeav~e~~------------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~--~~~~r~ig  443 (724)
                      +++||+||++++...                  .+++++++++.++++ +++|+..|.+..+ +.+....  -.+.|++|
T Consensus        67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig  145 (309)
T 1hyh_A           67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (309)
T ss_dssp             GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEee
Confidence            999999999998533                  246788888988875 5555432222221 2222221  23557776


Q ss_pred             E
Q 004918          444 A  444 (724)
Q Consensus       444 ~  444 (724)
                      +
T Consensus       146 ~  146 (309)
T 1hyh_A          146 T  146 (309)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.71  E-value=5.5e-09  Score=110.81  Aligned_cols=117  Identities=12%  Similarity=0.050  Sum_probs=81.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|++||++++..+...           +.|             +... ++ +.+++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~~  210 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAAQ  210 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence            5899999999999999999999999999999876443321           111             2222 44 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEecCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFSPA  450 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~~~p~  450 (724)
                      ||+||+++|.+.+.+.-+.+++.+.++++++|++.+++  .....+.+.+. ..-...++++|.|.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            99999999977665444435566778999988744444  33355655553 23345788887654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.70  E-value=7.8e-09  Score=110.36  Aligned_cols=117  Identities=15%  Similarity=0.028  Sum_probs=82.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||..+|..+. ..|++|++||++++..+...+           .|             +...+++ +.++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------LG-------------AERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------HT-------------CEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------cC-------------cEEeCCHHHHhc
Confidence            58999999999999999999 999999999998765443210           01             1223344 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCCC-CCEEEEecCCC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFSP  449 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~-~r~ig~h~~~p  449 (724)
                      +||+|++++|.+.+.+.-+.+++.+.++++++|++.+++  .....+.+.+... -...++++|.+
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999987776655545666778999988744444  3334566655432 22367888873

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.69  E-value=5.3e-09  Score=112.21  Aligned_cols=109  Identities=22%  Similarity=0.173  Sum_probs=81.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--------cEEEEeCCHHHHHH-HHHHHHHH--HHhhHhcCCCCHHHHHHhhcCcc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--------YVVLKEVNSEYLLK-GIKTIEAN--VRGLVTRGKLTQDKANNALKMLK  377 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--------~V~l~d~~~~~~~~-~~~~i~~~--~~~~~~~g~~~~~~~~~~~~~i~  377 (724)
                      .||+|||+|.||+++|..|+++|+        +|++|.|+++...+ ..+.++..  -.+++..-.+        ..++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~L--------p~~i~  106 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITL--------PDNLV  106 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCC--------CSSEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcC--------CCCcE
Confidence            489999999999999999999875        49999998763211 11111110  0011111122        25688


Q ss_pred             cccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004918          378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (724)
Q Consensus       378 ~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (724)
                      +++|+ +++++||+||.+||  .+..+++++++.+++++++++++.+.++.
T Consensus       107 ~t~dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          107 ANPDLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             EESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             EeCCHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEeccccc
Confidence            88888 67899999999999  99999999999999999999988887764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.67  E-value=7e-08  Score=101.45  Aligned_cols=99  Identities=18%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.||.++|..|+.+  |++|++||+++++++.....+.+...   .         .....++..++++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~---~---------~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP---V---------GLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH---H---------HTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh---c---------ccCCcEEEECCCHHHHC
Confidence            3899999999999999999985  79999999999877743211111100   0         00123466677887799


Q ss_pred             CCCEEEEcccCC--------------hHHHHHHHHHHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      +||+||++++..              ..+.+++.+.+.+++ ++++++
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~vi  115 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIII  115 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEE
Confidence            999999999632              245567778888886 445443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.66  E-value=1.7e-08  Score=106.37  Aligned_cols=122  Identities=21%  Similarity=0.293  Sum_probs=78.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      +++||+|||+|.||.++|..++..|.  +|+++|++++.++.....+.+..   ...+.         ..++. ++++++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~---~~~~~---------~~~i~-~~~~~a   71 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK---VFAPK---------PVDIW-HGDYDD   71 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT---TSSSS---------CCEEE-ECCGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHh---hhcCC---------CeEEE-cCcHHH
Confidence            45799999999999999999998875  89999999885553222222110   00000         01222 345688


Q ss_pred             cCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccC-----CCCCEEEE
Q 004918          385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-----SQDRIIGA  444 (724)
Q Consensus       385 ~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-----~~~r~ig~  444 (724)
                      +++||+||++++              ++..+++++.+.+.++++ +++++..  +-|+..+.....     .+.|++|+
T Consensus        72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv~--tNPv~~~~~~~~~~s~~p~~rviG~  147 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVA--TNPVDILTYATWKFSGLPHERVIGS  147 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEEC--SSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEEEEe--CCchHHHHHHHHHHhCCCHHHEEec
Confidence            999999999953              344788899999999974 5544322  225544433321     24466664

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.64  E-value=7.4e-08  Score=101.78  Aligned_cols=107  Identities=26%  Similarity=0.356  Sum_probs=74.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ++||+|||+|.||..+|..|+.+|+  +|+++|+++++++.....+.+.+. .  .+          ..++..+++.+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~-~--~~----------~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-F--YP----------TVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-G--ST----------TCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhh-h--cC----------CeEEEeCCCHHHh
Confidence            4689999999999999999999999  999999998776521111111110 0  00          1234444567888


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       386 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      ++||+||.++..              +.+++++++.++.++ .++++|++.+.+...
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~  129 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI  129 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence            999999999931              235677888888887 577777665555444

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.64  E-value=6.4e-09  Score=110.49  Aligned_cols=115  Identities=16%  Similarity=0.059  Sum_probs=80.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -++|+|||+|.||..+|..++..|++|++||++++. +...           +.|             +.. .++ +.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence            368999999999999999999999999999999876 3221           011             112 244 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFS  448 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~  448 (724)
                      +||+|++++|.+.+.+.-+.+++.+.++++++|++.+.+..++  .+...+. ..-...++++|.
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~  268 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFE  268 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCC
Confidence            9999999999877654433356667789999886544443333  4555443 233457789887

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.63  E-value=9.4e-08  Score=105.38  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=56.7

Q ss_pred             cceEEEEcCCCC--cHHHHHHHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGLM--GSGIATAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~m--G~~iA~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      .+||+|||+|.|  |.++|..++..    |++|++||++++.++........    ......        ...++..++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~----~l~~~~--------~~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK----YVEEVG--------ADLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH----HHHHTT--------CCCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHH----HhccCC--------CCcEEEEECC
Confidence            359999999997  56667788754    89999999999998875443322    222111        1246777888


Q ss_pred             c-cCcCCCCEEEEccc
Q 004918          382 Y-SEFKDVDMVIEAVI  396 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~  396 (724)
                      + +++++||+||++++
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            7 78999999999995

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.62  E-value=7.9e-08  Score=99.76  Aligned_cols=102  Identities=18%  Similarity=0.273  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.||.++|..|+..|+  +|++||++++.++....++.+....+   .         ...++..++++++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~---~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc---C---------CCCEEEEeCCHHHhC
Confidence            389999999999999999999998  99999999988763222222221111   0         012466666788999


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +||+||.+..-              +..+.+++.+.+.+++ |+++++..|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence            99999998732              2245556667788875 556655433

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.62  E-value=6.7e-09  Score=109.91  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=79.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|++||++++...                +             ....+++ +.+++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            5799999999999999999999999999999876311                1             1123344 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS  448 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~  448 (724)
                      ||+|+.++|.+.+.+.-+-++..+.++++++|++.+++..+  ..+...+. ...+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999977655443334455667889988654444333  45555554 335677888886

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.61  E-value=4.1e-08  Score=107.35  Aligned_cols=107  Identities=16%  Similarity=0.119  Sum_probs=76.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCCcEEEEe---CCHHHHHHHHHHHHHHHHhhHhcC------CCCHHHHHHhhcCcc-
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRG------KLTQDKANNALKMLK-  377 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~~V~l~d---~~~~~~~~~~~~i~~~~~~~~~~g------~~~~~~~~~~~~~i~-  377 (724)
                      +||+|||+|.||+.+|..|++ +|++|++||   ++++.++.+.+          +.+      ... .+......++. 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~-~~~~~~~~~~~~   71 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKD-GTQTEVKSRPKV   71 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSS-SCEEEEEECCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCC-CccceeeccceE
Confidence            589999999999999999998 599999999   87777665321          111      000 00000112343 


Q ss_pred             cccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       378 ~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      .+++. +++++||+||+|||  ....+++++++.++++++++|++++++..+
T Consensus        72 ~~~~~~~a~~~aD~Vilav~--~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~  121 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVP--AFAHEGYFQAMAPYVQDSALIVGLPSQAGF  121 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTCCTTCEEEETTCCTTH
T ss_pred             EeCCHHHHhCCCCEEEEeCc--hHHHHHHHHHHHhhCCCCcEEEEcCCCccH
Confidence            55666 45789999999999  555789999999999999999986655553

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.58  E-value=1.6e-08  Score=107.17  Aligned_cols=113  Identities=18%  Similarity=0.114  Sum_probs=77.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.           +.|             +... ++ +.+++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-----------ELK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------ceec-CHHHHHhh
Confidence            58999999999999999999999999999999875 2211           001             1122 34 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccCC-CCCEEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS  448 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~-~~r~ig~h~~~  448 (724)
                      ||+|++++|.+.+.+.-+-+++.+.++++ +|++.+.+..++  .+...+.. .....|+++|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999987665544444556678888 775443333332  34444432 34568899987

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.56  E-value=1.3e-07  Score=101.46  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc-ccccCc-cCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY-SEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~-~~~  385 (724)
                      ++||+|||+|.||..+|..|+++|++|++||++++.++...+..    ...+......      ...++ ..++++ +.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG----AIIAEGPGLA------GTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT----SEEEESSSCC------EEECCSEEESCHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC----CeEEeccccc------cccccceecCCHHHHH
Confidence            46899999999999999999999999999999998877643210    0000000000      00122 234555 447


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      +++|+||.|+|...  ..++++++.+.++++++|++.
T Consensus        74 ~~~D~vi~~v~~~~--~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 KDADVILIVVPAIH--HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEES
T ss_pred             hcCCEEEEeCCchH--HHHHHHHHHHhCCCCCEEEEc
Confidence            89999999999544  478889999999999977765

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.49  E-value=2.8e-07  Score=101.71  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      +||+|||+|.+ |.++|..|+..     +.+|++||+++++++...+.....+.   ..+         ...++..++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~---~~~---------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIR---EKA---------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHH---HHC---------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhc---cCC---------CCCEEEEECCH
Confidence            49999999998 55578788887     67999999999988775322221111   101         12357777887


Q ss_pred             -cCcCCCCEEEEcccCCh----------------------------------HHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004918          383 -SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILATNTSTID  427 (724)
Q Consensus       383 -~~~~~aDlVIeav~e~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (724)
                       +++++||+||.+++-..                                  .+.+++.+++.+++ |+++|+..|....
T Consensus        97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd  175 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  175 (472)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence             78999999999997411                                  24667778888887 4566653333322


Q ss_pred             H-HHHhcccCCCCCEEEE
Q 004918          428 L-NIVGEKTSSQDRIIGA  444 (724)
Q Consensus       428 ~-~~~~~~~~~~~r~ig~  444 (724)
                      + +........+.|++|+
T Consensus       176 i~T~~~~k~~p~~rViG~  193 (472)
T 1u8x_X          176 IVAEATRRLRPNSKILNI  193 (472)
T ss_dssp             HHHHHHHHHSTTCCEEEC
T ss_pred             HHHHHHHHhCCCCCEEEe
Confidence            2 2222222334477774

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.46  E-value=4.8e-07  Score=94.93  Aligned_cols=115  Identities=20%  Similarity=0.119  Sum_probs=76.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||+|.||+.+|..|+ +|++|++|+|+++.++...+.   .+. ....+.       .....+.  .+.+.+.++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~---G~~-~~~~~~-------~~~~~~~--~~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE---GIR-LYKGGE-------EFRADCS--ADTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH---CEE-EEETTE-------EEEECCE--EESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC---Cce-EecCCC-------eeccccc--ccccccCCC
Confidence            58999999999999999999 999999999999876654321   000 000000       0001111  112456789


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHhcccCCCCCEE
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII  442 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~i  442 (724)
                      |+||.||+  .....+++..+.+. .+++ |++...++... .+...++ ..+++
T Consensus        69 D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~-~~~vl  118 (307)
T 3ego_A           69 DLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV-GHSIY  118 (307)
T ss_dssp             SEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC-SCEEE
T ss_pred             CEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC-CCcEE
Confidence            99999998  66677888888764 6777 77888888875 4444433 23444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.45  E-value=8.3e-08  Score=99.28  Aligned_cols=124  Identities=10%  Similarity=-0.035  Sum_probs=85.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++..+.                             ....+++ +.+++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence            68999999999999999999999999999998754211                             1123344 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC-CCCCEEEEecC-----CCCCCCCeeeEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF-----SPAHVMPLLEIV  459 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~-----~p~~~~~lveii  459 (724)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+.+..  ...+.+.+. ..-...++-.|     +|.+..+-+.++
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT  253 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS  253 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence            9999999997666554444667788899998875444433  344555443 33344555544     334445556677


Q ss_pred             cC
Q 004918          460 RT  461 (724)
Q Consensus       460 ~~  461 (724)
                      |+
T Consensus       254 PH  255 (290)
T 3gvx_A          254 PH  255 (290)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.45  E-value=2.7e-07  Score=96.61  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.||.++|..++..|+  +|+++|+++++++....++.+..... ..           -.++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~-~~-----------~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH-GF-----------DTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH-TC-----------CCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc-CC-----------CcEEEECCCHHHhC
Confidence            489999999999999999999987  99999999987664333333221100 00           01244456789999


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +||+||.+..-              +..+.+++.+.+.+++ |+++++..|
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvt  118 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVA  118 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECC
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence            99999998742              2234556666777775 555554433

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.44  E-value=1.6e-07  Score=102.63  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             cceEEEEcCCCC--cHHHHHHHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGLM--GSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~m--G~~iA~~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      ..||+|||+|.|  |.+++..++.    .| +|++||++++.+++... +.   +. ...          ...+++.++|
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~---~~-l~~----------~~~~I~~TtD   68 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IG---NH-SGN----------GRWRYEAVST   68 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HH---TT-STT----------SCEEEEEESS
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HH---HH-Hhc----------cCCeEEEECC
Confidence            359999999998  5899988886    57 99999999998876532 11   11 111          2356888889


Q ss_pred             c-cCcCCCCEEEEccc
Q 004918          382 Y-SEFKDVDMVIEAVI  396 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~  396 (724)
                      + +++++||+||++++
T Consensus        69 ~~eAl~dADfVI~air   84 (450)
T 3fef_A           69 LKKALSAADIVIISIL   84 (450)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhcCCCEEEeccc
Confidence            8 67899999999995

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.44  E-value=2e-07  Score=98.18  Aligned_cols=103  Identities=27%  Similarity=0.336  Sum_probs=70.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-cccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~  382 (724)
                      +..+||+|||+|.||.++|..|+..|+  +|+++|+++++++....++.+... ...             ..+. .++++
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~~~-------------~~v~i~~~~~   68 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-FAP-------------QPVKTSYGTY   68 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-GSS-------------SCCEEEEECG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-ccc-------------CCeEEEeCcH
Confidence            346799999999999999999999997  999999999887654433333211 000             1112 24567


Q ss_pred             cCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          383 SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       383 ~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +++++||+||.++.-              +..+.+++.+.+.++++ +++++..|
T Consensus        69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvt  122 (326)
T 3pqe_A           69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVAT  122 (326)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECS
T ss_pred             HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcC
Confidence            899999999999832              22345566677777765 55554433

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.44  E-value=1.9e-07  Score=98.27  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=72.5

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      .+.+||+|||+|.||.++|..++..|+  +|+++|+++++++....++.+...    ..         ....+..+++++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~----~~---------~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL----FL---------KTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG----GC---------SCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhh----cc---------CCCeEEEcCCHH
Confidence            456799999999999999999999998  899999998876654433332110    00         012344567888


Q ss_pred             CcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          384 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       384 ~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ++++||+||.+..              .+..+.+++.+.+.++++ +++++.
T Consensus        84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vlv  134 (331)
T 4aj2_A           84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLLI  134 (331)
T ss_dssp             GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEE
T ss_pred             HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence            9999999998862              133566677778888854 555543

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.43  E-value=4.6e-08  Score=102.14  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=103.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc-CC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-KD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~  387 (724)
                      +||+|||+|.||+.+|..|+++|++|++|+|+++.++.           ....|...        ..+. .+..+++ ++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~-----------~~~~g~~~--------~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITY-----------YTVPHAPA--------QDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEE-----------ESSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEE-----------EecCCeec--------ccee-cCchHhcCCC
Confidence            58999999999999999999999999999999754321           00112110        1111 1223444 88


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEE------ecCCCCCCC-CeeeEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGA------HFFSPAHVM-PLLEIVR  460 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~------h~~~p~~~~-~lveii~  460 (724)
                      +|+||.||+  .....++++++.+.++++++|++...++...+.   +. ..++++.      ....|-... ....+.-
T Consensus        63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~-~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IP-FKNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CC-CSCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CC-CCcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            999999998  667788999999999999999888888876554   22 2333332      111221110 0001111


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhH
Q 004918          461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  500 (724)
Q Consensus       461 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~pG~i~nRl~~~  500 (724)
                      +   +.+..+.+.+++..-|....+..|.-+.....++..
T Consensus       137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N  173 (294)
T 3g17_A          137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVN  173 (294)
T ss_dssp             E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred             C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHH
Confidence            1   345667777777777777766677666555555443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.40  E-value=8.5e-08  Score=108.14  Aligned_cols=148  Identities=14%  Similarity=0.137  Sum_probs=95.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||+++|..+...|++|++||+++.. +.+.           +.|             +... ++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~e~~~~  196 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLG-------------IELL-SLDDLLAR  196 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------cEEc-CHHHHHhc
Confidence            68999999999999999999999999999998742 2211           111             1112 33 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH--HhcccCCCCCE--EEEecC-------CCCCCCCee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRI--IGAHFF-------SPAHVMPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~~~~~r~--ig~h~~-------~p~~~~~lv  456 (724)
                      ||+|+.|+|.+.+...-+-+++.+.++++++|++.+.+..+.+  +...+.. .++  .++.+|       +|....+.+
T Consensus       197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~-g~i~ga~lDv~~~eP~~~~~L~~~~~v  275 (529)
T 1ygy_A          197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG-GHVRAAGLDVFATEPCTDSPLFELAQV  275 (529)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT-SSEEEEEESSCSSSSCSCCGGGGCTTE
T ss_pred             CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHc-CCccEEEEeeccCCCCCCchHHhCCCE
Confidence            9999999996644433322346677899998876655544443  3344422 122  233333       122333456


Q ss_pred             eEecCCC-CCHHHHHH-----HHHHHHHcCCee
Q 004918          457 EIVRTER-TSAQVILD-----LMTVGKIIKKVP  483 (724)
Q Consensus       457 eii~~~~-t~~e~~~~-----~~~l~~~lGk~~  483 (724)
                      .++|+.. +++++.+.     +..+...++..+
T Consensus       276 ilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          276 VVTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             EECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6888776 67887765     667777777654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.39  E-value=2.9e-07  Score=96.99  Aligned_cols=138  Identities=12%  Similarity=0.056  Sum_probs=84.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||.++|..+...|++|++||+ +++.. .+.           +.|             +...+++ +.++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell~  201 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLLS  201 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHHh
Confidence            6899999999999999999999999999999 87652 111           111             1122234 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCC-CCCEEEEecC--CC-----CCCCCee
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLL  456 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~-~~r~ig~h~~--~p-----~~~~~lv  456 (724)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+++  .....+...+.. .-.-.++.+|  .|     ....+.+
T Consensus       202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nv  281 (320)
T 1gdh_A          202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT  281 (320)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTE
T ss_pred             hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCE
Confidence            999999999976654332224566778999988765555  233345554432 1122234444  23     2333446


Q ss_pred             eEecCCCC-CHHHHHH
Q 004918          457 EIVRTERT-SAQVILD  471 (724)
Q Consensus       457 eii~~~~t-~~e~~~~  471 (724)
                      .++|+... +.++...
T Consensus       282 iltPH~~~~t~~~~~~  297 (320)
T 1gdh_A          282 FLFPHIGSAATQARED  297 (320)
T ss_dssp             EECSSCTTCBHHHHHH
T ss_pred             EECCcCCcCcHHHHHH
Confidence            66665433 4444333

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.30  E-value=1.2e-06  Score=90.57  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|.++|..++.++.  +++++|++++.++.-..++.+.....   +         ....+..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~---~---------~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGG---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccC---C---------CCCeEecCCCHHHhC
Confidence            489999999999999999998876  89999999877654333333321100   0         012345577889999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +||+||.+.-              .|..+.+++.+++.++++. ++++..|.
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~-aivlvvsN  119 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPE-SKILVVTN  119 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTT-CEEEECSS
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEecC
Confidence            9999998862              1455667777788888754 45544333

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.30  E-value=3.1e-06  Score=83.44  Aligned_cols=136  Identities=12%  Similarity=0.099  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++..+.+.+.+.|..++.++. +.|+|  .+-|      +++.                ....++ +.|..+++||++.
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG------Gsv~----------------a~~~I~-~~i~~~~~pV~t~  102 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPG------GSIN----------------EGLAIL-DIFNYIKSDIQTI  102 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC------CCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            4788889999999998876555 66666  3333      2221                122445 6688899999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccC---Ccchhh-hh-----------c--ccccHHHHHHHHHc
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GFGGTQ-RL-----------P--RLVGLSKAIEMMLL  165 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P---~~g~~~-~l-----------~--r~~G~~~a~~l~lt  165 (724)
                      +.|.|..+|.-++++||.  |+|.++|.+++.....|...   +..... .+           .  +-.......+++-.
T Consensus       103 v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~  182 (215)
T 2f6i_A          103 SFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  182 (215)
T ss_dssp             EEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             EeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence            999999999999999999  99999999987665433210   000000 00           0  01233455555555


Q ss_pred             CCCCCHHHHHHCCCcceecCc
Q 004918          166 SKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +..++++||++.||||+|.+.
T Consensus       183 ~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          183 DYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             TCEECHHHHHHHTSCSEECCC
T ss_pred             CeecCHHHHHHCCCCCEecCC
Confidence            667899999999999999854

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.29  E-value=3.8e-07  Score=95.93  Aligned_cols=127  Identities=10%  Similarity=0.057  Sum_probs=83.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence            689999999999999999999999999999987542110                          001112233 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEecCC--C------CCCCCee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFS--P------AHVMPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~~~--p------~~~~~lv  456 (724)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+  .....+.+.+. ..-...++-.|.  |      .+..+-|
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  271 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV  271 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSE
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCE
Confidence            99999999977776555556677788999988754443  33345555553 223344554442  2      2333446


Q ss_pred             eEecC
Q 004918          457 EIVRT  461 (724)
Q Consensus       457 eii~~  461 (724)
                      .++|+
T Consensus       272 ilTPH  276 (324)
T 3evt_A          272 LITPH  276 (324)
T ss_dssp             EECCS
T ss_pred             EEcCc
Confidence            66664

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.28  E-value=3.5e-06  Score=82.10  Aligned_cols=137  Identities=20%  Similarity=0.257  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++..+.+.+.+.|..++.++..+.|+|  .+-|+      ++.                ....++ +.|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v~----------------~~~~I~-~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGG------SVT----------------AGFAIY-DTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC------CHH----------------HHHHHH-HHHHHhcCCcEEE
Confidence            4899999999999999987766666555  34332      221                122445 6688899999999


Q ss_pred             ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchh-----hh-----------hccc--ccHHHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT-----QR-----------LPRL--VGLSKAIEMML  164 (724)
Q Consensus       105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~-----~~-----------l~r~--~G~~~a~~l~l  164 (724)
                      +.|.|.++|.-++++||  .|++.++++|......-|. -|...-     ..           +.+.  .......+++-
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~  170 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA-QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTD  170 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST-TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            99999999999999999  6999999999886554321 111000     00           1111  23455666777


Q ss_pred             cCCCCCHHHHHHCCCcceecCcc
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSE  187 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~  187 (724)
                      ....++|+||++.||||+|+...
T Consensus       171 ~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          171 RDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             SCCCEEHHHHHHHTSCSEECCCC
T ss_pred             cCceecHHHHHHcCCcCEecCCc
Confidence            77889999999999999998654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.28  E-value=9.2e-07  Score=92.55  Aligned_cols=137  Identities=16%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.           +.|             +... ++ +.+++
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  196 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKFV-DLETLLKE  196 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------cccc-CHHHHHhh
Confidence            68999999999999999999999999999999875 2211           111             1111 33 45678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEEEecCC--CC------CCCCee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--PA------HVMPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~--p~------~~~~lv  456 (724)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+++-.+  ..+...+. ..-.-.++.+|.  |.      +..+.+
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  276 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV  276 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCE
Confidence            99999999976654432224555678999988765554333  24444443 222334444443  22      233446


Q ss_pred             eEecCCCC-CHHHHHH
Q 004918          457 EIVRTERT-SAQVILD  471 (724)
Q Consensus       457 eii~~~~t-~~e~~~~  471 (724)
                      .++|+... +.++...
T Consensus       277 iltPh~~~~t~~~~~~  292 (307)
T 1wwk_A          277 VLTPHIGASTVEAQER  292 (307)
T ss_dssp             EECSSCTTCBHHHHHH
T ss_pred             EECCccccCcHHHHHH
Confidence            66665432 3444433

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.27  E-value=5.1e-06  Score=91.16  Aligned_cols=201  Identities=17%  Similarity=0.199  Sum_probs=145.2

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC---C-----------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCCccCCCC
Q 004918            3 APRVTMEVG-NDGVAIITLINPP---V-----------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGRFSGGFD   66 (724)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~---~-----------Nal~~~~~~~l~~~l~~~~-~d~~v~~vVl~g~g~~F~aG~D   66 (724)
                      |+.+...++ ..+++.++...|.   .           +.....|..||.+++-.+. +++++...++...|..      
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~------  338 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA------  338 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH------
Confidence            344545443 4568888887762   1           3344668899976666664 5678999998776643      


Q ss_pred             chhhh-------hccCCCcccccchhHHHHHHHHHhcCCCcEEEEE-Cccccchh-HHHHhhcCEEEEeC-------Cce
Q 004918           67 INVFQ-------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIAAP-------KTQ  130 (724)
Q Consensus        67 l~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~a~GgG-~~lalacD~ria~~-------~a~  130 (724)
                       ..+.       ...+..-+.+...+..+.+ .+|--...-++|.| .|.|+.|- +||+++||..++-+       .+.
T Consensus       339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~  416 (556)
T 2w3p_A          339 -RHLLAADASLMQHKDHWFVRETIGLLRRTL-ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA  416 (556)
T ss_dssp             -HHHHHHHHHHHHTTTSHHHHHHHHHHHHHH-HHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred             -HHHhhhHHHHHhccchHHHHHHHHHHHHHH-HHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence             2221       1111222233344444555 55777788889988 68998775 59999999999962       378


Q ss_pred             eeCcccccCccCCcchhhhhcccc-cHHHHHHHH--HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchh
Q 004918          131 LGLPELTLGVIPGFGGTQRLPRLV-GLSKAIEMM--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  207 (724)
Q Consensus       131 f~~pe~~~G~~P~~g~~~~l~r~~-G~~~a~~l~--ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~  207 (724)
                      +.+.+.++|..|-..+..||.+++ |.....+.+  ..|+++++++|.++|||+...++-+.+++++-..++-++.||.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDA  496 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcch
Confidence            999999999999888888887765 433333322  46999999999999999999999999999999999999999987


Q ss_pred             hhhh
Q 004918          208 IRSL  211 (724)
Q Consensus       208 ~~~~  211 (724)
                      +.-+
T Consensus       497 ~~~~  500 (556)
T 2w3p_A          497 LTGL  500 (556)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            6544

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.27  E-value=5.9e-07  Score=95.42  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|+.||+++...+...+           .|             +...+++ +.+++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------TG-------------AKFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------HC-------------CEECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------CC-------------CeEcCCHHHHHhc
Confidence            58999999999999999999999999999998643332211           01             2223344 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (724)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+-  ....+...+.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence            999999999766655444456677789999887544433  3334555443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.24  E-value=1.1e-06  Score=91.80  Aligned_cols=125  Identities=10%  Similarity=0.009  Sum_probs=82.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++  +.               +             .....++ +.++.
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell~~  174 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEALRE  174 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHHTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHHhh
Confidence            6899999999999999999999999999999875  10               1             0112234 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecC---CCC------CCCCe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF---SPA------HVMPL  455 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~---~p~------~~~~l  455 (724)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+++-.+.  .+...+. ..-.-.+...|   .|.      +..+-
T Consensus       175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~n  254 (303)
T 1qp8_A          175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN  254 (303)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTT
T ss_pred             CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCC
Confidence            999999999776544333346667889999887544443332  3444443 22334566655   332      22344


Q ss_pred             eeEecCCC
Q 004918          456 LEIVRTER  463 (724)
Q Consensus       456 veii~~~~  463 (724)
                      +.++|+..
T Consensus       255 viltPH~~  262 (303)
T 1qp8_A          255 VVATPWVA  262 (303)
T ss_dssp             EEECCSCS
T ss_pred             EEECCCcC
Confidence            66666543

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.23  E-value=2e-06  Score=83.55  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++..+.+.+.+.|..++.++..+.|+|.  +-|+      ++.                ....++ +.|..+++||++.
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v~----------------a~~~I~-~~i~~~~~pV~~~   90 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGG------VIT----------------AGMSIY-DTMQFIKPDVSTI   90 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCC------CHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            48888999999999999877667777763  3332      221                122445 6688899999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchh-h-----------------hhccc--ccHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRL--VGLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~-~-----------------~l~r~--~G~~~a~~l  162 (724)
                      +.|.|..+|.-++++||.  |++.+++.++......|.   .|-. .                 .+.+.  .......++
T Consensus        91 v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  167 (193)
T 1yg6_A           91 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  167 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999  999999998875543221   1110 0                 01111  123444455


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-.+..++++||+++||||++..+
T Consensus       168 ~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          168 TERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hcCCeEEcHHHHHHcCCCCEecCC
Confidence            445667799999999999999854

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.22  E-value=4.2e-07  Score=96.07  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++..                .+             .....++ +.+++
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~~  222 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLARD  222 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHhc
Confidence            689999999999999999999999999999987530                00             1112344 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF  447 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~  447 (724)
                      ||+|+.++|...+...-+-++..+.++++++|+..+.+-.+.  .+.+.+. ..-...++-.|
T Consensus       223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf  285 (340)
T 4dgs_A          223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVF  285 (340)
T ss_dssp             CSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCC
T ss_pred             CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCc
Confidence            999999999777666555567778899999887555444433  3444443 22234455444

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.22  E-value=1e-06  Score=92.55  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-cccCcc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~  383 (724)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+...               .+..+. .+.+++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~---------------~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP---------------FTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG---------------GSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh---------------hcCCcEEEECcHH
Confidence            34699999999999999999999988  899999999877654333322110               011222 245678


Q ss_pred             CcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       384 ~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ++++||+||.+..-              +..+.+++.+.+.++++ +++++..|
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvt  125 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAA  125 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECS
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEcc
Confidence            99999999998631              33455667777888765 55554433

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.22  E-value=1.3e-06  Score=92.79  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||+++.. +.+           .+.|             +...+++ +.+++
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence            68999999999999999999999999999998643 211           1111             2223344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ||+|+.++|-+.+...-+-++..+.++++++|+..+.+
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg  253 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRA  253 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCG
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCc
Confidence            99999999977666554445667788999988754433

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.22  E-value=1e-06  Score=93.25  Aligned_cols=96  Identities=15%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      ..+||+|||+ |.+|.++|..++..|.  +|+++|+++++++.....+.+..        ..       ..++..++++ 
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--------~~-------~~~i~~t~d~~   71 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--------FE-------GLNLTFTSDIK   71 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--------CT-------TCCCEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--------CC-------CCceEEcCCHH
Confidence            3579999998 9999999999999985  89999999987665433333210        10       1246666776 


Q ss_pred             cCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCc
Q 004918          383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHC  417 (724)
Q Consensus       383 ~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~  417 (724)
                      +++++||+||.++.              .+..+.+++.+.+.+++++..
T Consensus        72 ~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           72 EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            67999999999862              234566777788888886554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.19  E-value=7.7e-07  Score=93.43  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++... +.           +.|             +.. .++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~-~~l~ell~~  196 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KIN-------------AKA-VSLEELLKN  196 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTT-------------CEE-CCHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcC-------------cee-cCHHHHHhh
Confidence            6899999999999999999999999999999987532 11           111             111 133 45788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (724)
                      ||+|+.++|...+...-+-++..+.+++++++++.+++-.+  ..+.+.+.
T Consensus       197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            99999999976654322224455678899988765554333  34455543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.18  E-value=2.2e-06  Score=92.52  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|+.||+++....                            .......++ +.+++
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----------------------------~~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----------------------------GNVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----------------------------TTBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----------------------------cCcEecCCHHHHHhh
Confidence            6899999999999999999999999999998743100                            011122344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (724)
                      ||+|+.++|...+.+.-+-++....++++++|+..+.+-.  ...+.+.+.
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~  259 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ  259 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence            9999999997776554444566677899998875444433  345555553

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.17  E-value=4.9e-06  Score=91.37  Aligned_cols=123  Identities=20%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      .||+|||+|.+ |.+++..|+..     +.+|++||+++  ++++.... +...+..  ..+         ...++..++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~-~~~~~~~--~~~---------~~~~i~~t~   75 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA-LAKRMVE--KAG---------VPIEIHLTL   75 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHH-HHHHHHH--HTT---------CCCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHH-HHHHHHh--hcC---------CCcEEEEeC
Confidence            58999999999 77888888874     66899999999  88776432 2221110  111         013566678


Q ss_pred             Cc-cCcCCCCEEEEcccCCh----------------------------------HHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          381 DY-SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav~e~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      |+ +++++||+||.+++-..                                  .+.+++.+++.++++ +++++..|..
T Consensus        76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P-~a~ii~~tNP  154 (450)
T 1s6y_A           76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWLINFTNP  154 (450)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSS
T ss_pred             CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCC-CeEEEEeCCc
Confidence            87 78999999999997311                                  346677788888874 5555533333


Q ss_pred             CCH-HHHhcccCCCCCEEEE
Q 004918          426 IDL-NIVGEKTSSQDRIIGA  444 (724)
Q Consensus       426 ~~~-~~~~~~~~~~~r~ig~  444 (724)
                      ..+ ++.........|++|+
T Consensus       155 vdivT~a~~k~~p~~rViG~  174 (450)
T 1s6y_A          155 AGMVTEAVLRYTKQEKVVGL  174 (450)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEe
Confidence            222 2332222333477764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.15  E-value=5.7e-06  Score=86.98  Aligned_cols=109  Identities=20%  Similarity=0.269  Sum_probs=71.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ..||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+.+.. ......           -.+.. ++++++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~~~~-----------~~v~~-~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYSPTT-----------VRVKA-GEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGSSSC-----------CEEEE-CCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhcCCC-----------eEEEe-CCHHHh
Confidence            3599999999999999999998885  89999999887764333332221 110000           12332 456889


Q ss_pred             CCCCEEEEcccC--Ch------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          386 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       386 ~~aDlVIeav~e--~~------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                      ++||+||.+++-  ++            .+.+++.+.+.+++ ++++++..  +.|+..+.
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~t  130 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDILA  130 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHH
Confidence            999999999843  21            45566667788875 55555442  34554333

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.14  E-value=1.6e-06  Score=90.90  Aligned_cols=125  Identities=16%  Similarity=0.094  Sum_probs=80.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -++|+|||+|.||.++|..+...|++|++||++++...                              +. ..++ +.++
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~  192 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLK  192 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHh
Confidence            36899999999999999999999999999999875311                              11 1233 4568


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCCCCCEEEEecCC--C------CCCCCee
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS--P------AHVMPLL  456 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~--p------~~~~~lv  456 (724)
                      +||+|+.++|.+.+...-+-++..+.++++++++..+++-.+  ..+.+.+...-.-.++..|.  |      .+..+.+
T Consensus       193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  272 (311)
T 2cuk_A          193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALPNA  272 (311)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCTTE
T ss_pred             hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCCCE
Confidence            899999999976554332223455678999988755544333  24555554222223444443  3      2233446


Q ss_pred             eEecCCC
Q 004918          457 EIVRTER  463 (724)
Q Consensus       457 eii~~~~  463 (724)
                      .++|+..
T Consensus       273 iltPh~~  279 (311)
T 2cuk_A          273 VITPHIG  279 (311)
T ss_dssp             EECCSCT
T ss_pred             EECCcCC
Confidence            6666543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.13  E-value=2.9e-06  Score=89.21  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~  385 (724)
                      .||+|||+|.+|.+++..++..++  +++++|+++++++.....+.+..    .           ....+.. ..+++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----A-----------FTAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----G-----------GSCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----H-----------hcCCeEEEECCHHHh
Confidence            589999999999999999999887  89999999988775333332211    0           0012222 2456889


Q ss_pred             CCCCEEEEcccCC--h------------HHHHHHHHHHHhhCCCCcEEEe
Q 004918          386 KDVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       386 ~~aDlVIeav~e~--~------------~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ++||+||.+++-.  +            .+.+++.+.+.+++ |+++++.
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv  119 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLV  119 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            9999999998421  1            45566667788876 5555543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.13  E-value=1.2e-06  Score=94.87  Aligned_cols=100  Identities=16%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||+.+|..+...|++|+.||++++..                .+            .+....++ +.++.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHhc
Confidence            589999999999999999999999999999975420                01            11223344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (724)
                      ||+|+.++|...+.+.-+-++..+.++++++|+..+.+-.+  ..+.+.+.
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            99999999987765544335566778999988754444333  34455443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.13  E-value=1.8e-06  Score=90.86  Aligned_cols=119  Identities=23%  Similarity=0.328  Sum_probs=72.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHhhcCcccccCccC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ..||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+.        ... +.      ..-++.. +++++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~--------~~~~~~------~~~~i~~-~~~~a   71 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDIN--------HGLPFM------GQMSLYA-GDYSD   71 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHT--------TSCCCT------TCEEEC---CGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH--------HhHHhc------CCeEEEE-CCHHH
Confidence            3589999999999999999999998  99999999877653221111        110 00      0012332 46788


Q ss_pred             cCCCCEEEEcccCCh--------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhccc----C-CCCCEEEE
Q 004918          385 FKDVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  444 (724)
Q Consensus       385 ~~~aDlVIeav~e~~--------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~----~-~~~r~ig~  444 (724)
                      +++||+||.+++-..              .+.+++.+.+.+++ ++++++..  +.|+..+....    . .+.|++|+
T Consensus        72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence            999999999986322              23466677788886 55555442  44554333222    2 34566664

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.12  E-value=1.5e-06  Score=93.50  Aligned_cols=104  Identities=10%  Similarity=-0.026  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|++||++++..+...           +.|             +....++ +.++.
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999864432211           011             1112233 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~  436 (724)
                      ||+|+.++|-+.+...-+-++..+.++++++|+..+.+-.+  ..+.+.+.
T Consensus       248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  298 (393)
T 2nac_A          248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE  298 (393)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence            99999999976655332224566778999988755544333  34555553

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.11  E-value=3.3e-06  Score=88.47  Aligned_cols=98  Identities=19%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|.+++..++..+  .+|+++|+++++++.....+.+..    ...  .       .-++.. +++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~----~~~--~-------~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT----PFA--H-------PVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG----GGS--C-------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH----hhc--C-------CeEEEE-CCHHHhC
Confidence            48999999999999999999987  589999999887765332222111    000  0       012332 4678899


Q ss_pred             CCCEEEEcccC--C------------hHHHHHHHHHHHhhCCCCcEEEe
Q 004918          387 DVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       387 ~aDlVIeav~e--~------------~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +||+||.+++-  +            ..+.+++.+.+.++++ +++++.
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv  114 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLLV  114 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEE
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEE
Confidence            99999998742  2            4456677777888865 455543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.11  E-value=1.1e-06  Score=92.32  Aligned_cols=127  Identities=14%  Similarity=0.096  Sum_probs=81.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|+.||++++..+..                          .......++ +.+++
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence            689999999999999999999999999999987431110                          001112233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC-CCCCEEEEecC--------CCCCCCCee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFF--------SPAHVMPLL  456 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~-~~~r~ig~h~~--------~p~~~~~lv  456 (724)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+-.  ...+...+. ..-...++-.|        +|.+..+-+
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  274 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL  274 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTE
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCE
Confidence            9999999997665544444455667899998875444433  334555543 22233444433        223344556


Q ss_pred             eEecC
Q 004918          457 EIVRT  461 (724)
Q Consensus       457 eii~~  461 (724)
                      .++|+
T Consensus       275 ilTPH  279 (324)
T 3hg7_A          275 IITPH  279 (324)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            67764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.10  E-value=3.5e-06  Score=88.87  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (724)
                      -.||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..    .           ....+.. ..++++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL----P-----------FTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH----H-----------hcCCeEEEECCHHH
Confidence            3699999999999999999998887  89999999987765333222211    0           0112222 246688


Q ss_pred             cCCCCEEEEcccCC--h------------HHHHHHHHHHHhhCCCCcEEEe
Q 004918          385 FKDVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       385 ~~~aDlVIeav~e~--~------------~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++||+||.+++-.  +            .+.+++.+.+.+++ |+++|+.
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv  123 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLV  123 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEE
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            99999999998422  1            45566667788886 4555543

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.09  E-value=7.9e-06  Score=82.93  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .++..+.+.+.+.|..++.++..+.|+|  .+-|+      ++.                ....++ +.|..+++||++.
T Consensus        90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGG------sV~----------------ag~aIy-d~I~~~k~pV~t~  146 (277)
T 1tg6_A           90 PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGG------VVT----------------AGLAIY-DTMQYILNPICTW  146 (277)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSCSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence            4888899999999988876555676666  34332      221                122445 6688889999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcch-hhh-----------------hccc--ccHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG-TQR-----------------LPRL--VGLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~-~~~-----------------l~r~--~G~~~a~~l  162 (724)
                      +.|.|..+|.-|+++||.  |+|.++++++.....-|.   .|- +..                 +.+.  .......++
T Consensus       147 v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~---~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~  223 (277)
T 1tg6_A          147 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA  223 (277)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999  999999998876543222   111 000                 0111  123455556


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-.+..++++||+++||||+|...
T Consensus       224 ~drd~~lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          224 MERDRYMSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             HSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HhcCcccCHHHHHHCCCCCEecCc
Confidence            656678899999999999999854

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.09  E-value=5.5e-06  Score=88.27  Aligned_cols=137  Identities=8%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|++|+.||++... +.+           .+.|             +. ..++ +.++.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~-~~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SML-----------EENG-------------VE-PASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHH-----------HHTT-------------CE-ECCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHH-----------hhcC-------------ee-eCCHHHHHhc
Confidence            68999999999999999999999999999998533 111           0111             11 1234 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccCCCCCEEEEecC--CC------CCCCCeee
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFF--SP------AHVMPLLE  457 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~--~p------~~~~~lve  457 (724)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+  +....+.+.+....-..++--|  .|      .+..+-|.
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvi  310 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFI  310 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEE
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEE
Confidence            99999999977776655556677889999988744433  3334555554422111344333  22      23344566


Q ss_pred             EecCCC-CCHHHHHH
Q 004918          458 IVRTER-TSAQVILD  471 (724)
Q Consensus       458 ii~~~~-t~~e~~~~  471 (724)
                      +.|+-. .+.++.+.
T Consensus       311 lTPHia~~t~e~~~~  325 (365)
T 4hy3_A          311 RSAHRAGALDSAFKK  325 (365)
T ss_dssp             ECCSCSSCCHHHHHH
T ss_pred             ECCccccCHHHHHHH
Confidence            777432 24444433

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.09  E-value=1.1e-06  Score=92.97  Aligned_cols=101  Identities=16%  Similarity=0.082  Sum_probs=72.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.++|..+...|++|+.||+++...+..             .+             ....+++ +.+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g-------------~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EG-------------AIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TT-------------CEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cC-------------CeEeCCHHHHHhh
Confidence            689999999999999999999999999999986432211             01             1223344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhccc
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT  435 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~  435 (724)
                      ||+|+.++|-+.+...-+-++..+.++++++|+..+.+  .....+.+.+
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  277 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL  277 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            99999999977766544445667778999988754433  3334455544

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.07  E-value=1.6e-06  Score=91.56  Aligned_cols=101  Identities=9%  Similarity=0.013  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|++|++||++++.. .+.           +.|             +.. .++ +.+++
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g-------------~~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFG-------------VQQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcC-------------cee-CCHHHHHhc
Confidence            689999999999999999999999999999987642 111           111             111 133 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhccc
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT  435 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~  435 (724)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+++-.+.  .+...+
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL  269 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL  269 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence            999999999776654433355667889999887555544333  444444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.07  E-value=1.7e-05  Score=72.62  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=66.5

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHhhcCcccccCccCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ++++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.+..     ...-.+-.+ ++....           ..+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~-----~~~~~gd~~~~~~l~~-----------~~~   68 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG-----FDAVIADPTDESFYRS-----------LDL   68 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT-----CEEEECCTTCHHHHHH-----------SCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-----CcEEECCCCCHHHHHh-----------CCc
Confidence            357899999999999999999999999999999999877643210     000011111 110000           135


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      .++|+||.+++ +.+....+...+.+.. ...+++...+......
T Consensus        69 ~~~d~vi~~~~-~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~  111 (141)
T 3llv_A           69 EGVSAVLITGS-DDEFNLKILKALRSVS-DVYAIVRVSSPKKKEE  111 (141)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHH
T ss_pred             ccCCEEEEecC-CHHHHHHHHHHHHHhC-CceEEEEEcChhHHHH
Confidence            78999999998 4444444445555554 5556665554443333

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.02  E-value=1.9e-06  Score=90.92  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|++|+.||+++...+...+           .|             +... ++ +.++.
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~-~l~ell~~  200 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------LG-------------LRQV-ACSELFAS  200 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------cC-------------ceeC-CHHHHHhh
Confidence            68999999999999999999999999999998743222110           01             1112 33 45788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhccc
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKT  435 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~  435 (724)
                      ||+|+.++|-+.+...-+-++..+.++++++|+..+.+-  ....+.+.+
T Consensus       201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            999999999766655545566778889999887544443  333454444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.02  E-value=7.6e-07  Score=93.28  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            689999999999999999999999999999987642110                          000001223 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhccc
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT  435 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~  435 (724)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+  .....+.+.+
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  243 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL  243 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence            99999999977766544446677788999988654443  3334455554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.99  E-value=5.8e-06  Score=86.80  Aligned_cols=89  Identities=11%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.||..++..|++. |+ +|++|||+++++++..+.+          +           ..+...+++ +.+
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------~-----------~~~~~~~~~~e~v  194 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------Q-----------GEVRVCSSVQEAV  194 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------S-----------SCCEECSSHHHHH
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------h-----------CCeEEeCCHHHHH
Confidence            5899999999999999999876 76 8999999999877643211          1           013334455 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ++||+||.|+|..    ..++..  +.++++++|++.++
T Consensus       195 ~~aDiVi~atp~~----~~v~~~--~~l~~g~~vi~~g~  227 (312)
T 2i99_A          195 AGADVIITVTLAT----EPILFG--EWVKPGAHINAVGA  227 (312)
T ss_dssp             TTCSEEEECCCCS----SCCBCG--GGSCTTCEEEECCC
T ss_pred             hcCCEEEEEeCCC----CcccCH--HHcCCCcEEEeCCC
Confidence            8999999999853    233322  46788888876433

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.98  E-value=2.9e-06  Score=89.87  Aligned_cols=101  Identities=14%  Similarity=0.021  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|++||++++..  . .   .    .                 +...+++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~---~----~-----------------~~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-E---K----K-----------------GYYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-H---H----T-----------------TCBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-H---h----h-----------------CeecCCHHHHHhh
Confidence            689999999999999999999999999999987653  1 0   0    0                 1112233 45678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (724)
                      ||+|+.++|...+...-+-++..+.+++++++++.+.+-  ....+.+.+.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  250 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  250 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            999999999776644323244556788999887555443  3345555543

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=97.98  E-value=7e-06  Score=79.87  Aligned_cols=134  Identities=19%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .+++.+.+.+.+.|..++.++..+.|+|  .+-|      +++.                ....++ +.|..+++|+++.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~~~~I~-~~i~~~~~~v~t~   94 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG------GMVT----------------AGMGVY-DTMQFIKPDVSTI   94 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHHhCCCeEEE
Confidence            4889999999999999987666666665  3333      2221                122445 6688899999999


Q ss_pred             ECccccchhHHHHhhcCE--EEEeCCceeeCcccccCccCCcchhh----------hh--------ccc--ccHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ----------RL--------PRL--VGLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~P~~g~~~----------~l--------~r~--~G~~~a~~l  162 (724)
                      +.|.|..+|.-++++||.  |++.+++++......-|.   .|-..          .+        .+.  .......++
T Consensus        95 ~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~  171 (201)
T 3p2l_A           95 CIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD  171 (201)
T ss_dssp             EEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999998  999999998776654221   11110          00        111  123444455


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-....++|+||++.||||+|++.
T Consensus       172 ~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          172 TDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             TSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             hhcCeeecHHHHHHcCCccEecCC
Confidence            555566799999999999999854

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.97  E-value=1.9e-06  Score=92.31  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||..+|..+...|++ |++||+++...+...           +.|             +....++ +.++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence            5899999999999999999999997 999999875433211           111             1122344 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (724)
                      +||+|+.++|...+...-+-++..+.++++++|++.+.+-  ....+.+.+.
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~  272 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE  272 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence            9999999999766554433345667789999887544442  3334555443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.96  E-value=2.3e-06  Score=90.94  Aligned_cols=102  Identities=14%  Similarity=0.036  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|++||++++.... .           ..|             +....++ +.++.
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~g-------------~~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-R-----------ALG-------------LQRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-H-----------HHT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhH-h-----------hcC-------------CeecCCHHHHHhc
Confidence            58999999999999999999999999999997653110 0           001             1112233 45788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhccc
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT  435 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~  435 (724)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+++-.+  ..+.+.+
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  273 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  273 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence            99999999976554433335566778999988755554333  3455444

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.96  E-value=1.3e-06  Score=92.51  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=74.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|++|+.||++++..              .+.             ..... ++ +.+++
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~-------------~~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEP-------------FLTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTT-------------TCEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhc-------------ccccc-CHHHHHhc
Confidence            689999999999999999999999999999987530              000             01112 34 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHF  446 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~  446 (724)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+  .....+.+.+. ..-...++--
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV  262 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDT  262 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESC
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecc
Confidence            99999999976665544445666778999988754443  33344555443 2223345443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.95  E-value=5.5e-05  Score=68.68  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|+|+|.||..++..|.+.|++|+++|++++.++...+..    ....-.+.. +....           ....+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l-----------~~~~~~~   69 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTL-----------EDAGIED   69 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHH-----------HHTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHH-----------HHcCccc
Confidence            4899999999999999999999999999999998766532110    000000101 00000           0023678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +|+||.+++.+ .. ...+..+.+.++++.+++.
T Consensus        70 ~d~vi~~~~~~-~~-~~~~~~~~~~~~~~~ii~~  101 (140)
T 1lss_A           70 ADMYIAVTGKE-EV-NLMSSLLAKSYGINKTIAR  101 (140)
T ss_dssp             CSEEEECCSCH-HH-HHHHHHHHHHTTCCCEEEE
T ss_pred             CCEEEEeeCCc-hH-HHHHHHHHHHcCCCEEEEE
Confidence            99999999854 22 2333444455666677654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.86  E-value=4.5e-06  Score=77.00  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..++..|...|++|+++|+++++++...+.+          +           ..+...++. +.+++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence            5899999999999999999999999999999999876643211          0           011123333 45688


Q ss_pred             CCEEEEcccCC
Q 004918          388 VDMVIEAVIES  398 (724)
Q Consensus       388 aDlVIeav~e~  398 (724)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999854

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.84  E-value=9.5e-05  Score=83.02  Aligned_cols=159  Identities=14%  Similarity=0.046  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .-++.+...+.+..+++.+... .+-+|.|.-     |.|+.+.+-......  ...+.+.. ..+ ..+....+|+|++
T Consensus       118 gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~i~-~~~-~~ls~~giP~Isv  187 (587)
T 1pix_A          118 AGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPF-FRN-AELNQLGIPVIVG  187 (587)
T ss_dssp             TTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEe-----CCCCCccccchhccc--cccHHHHH-HHH-HHHhCCCCCEEEE
Confidence            3688889999999999988765 455666654     456666543221110  01122222 223 3467788999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHH-HcCCCCCHHH-------HH
Q 004918          105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM-LLSKSITSEE-------GW  175 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~-ltg~~i~a~e-------A~  175 (724)
                      |.|.|.|||... ..||++|+++. +.+++.-..  ++-    ...-.-.++..+|.+++ .+|+.+++++       +.
T Consensus       188 v~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~----~~~~~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~  260 (587)
T 1pix_A          188 IYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMG----GMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIHYT  260 (587)
T ss_dssp             ECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCC----SCCSSSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTT
T ss_pred             EecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHh----hhccccccchhHHHHHHHHhCCccChhhcccHHHHHh
Confidence            999999999999 99999999864 888762110  000    00001127899999999 9999988665       23


Q ss_pred             HCCCcceecCcchHHHHHHHHHHHHHcc
Q 004918          176 KLGLIDAVVTSEELLKVSRLWALDIAAR  203 (724)
Q Consensus       176 ~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (724)
                      +.|++|.+++.++   .+.+.++++...
T Consensus       261 ~~GvvD~vv~~e~---~a~~~~r~~ls~  285 (587)
T 1pix_A          261 ETGFMREVYASEE---GVLEGIKKYVGM  285 (587)
T ss_dssp             TSCCSCEEESSHH---HHHHHHHHHHHT
T ss_pred             hcCceeEecCCHH---HHHHHHHHHHHh
Confidence            6999999998765   444555555444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.83  E-value=4.3e-05  Score=67.15  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG  347 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~  347 (724)
                      +++|.|+|+|.||..++..|.+.| ++|+++|++++.++..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            578999999999999999999999 9999999999876653

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.82  E-value=2.6e-06  Score=90.93  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=73.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||+++|..+...|++|++||++.+...               .+             .. ..++ +.+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------------~~-------------~~-~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG---------------DE-------------GD-FRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT---------------CC-------------SC-BCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc---------------cC-------------cc-cCCHHHHHhh
Confidence            6899999999999999999999999999997543210               00             11 2334 55789


Q ss_pred             CCEEEEcccCChH----HHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCC-CCCEEEEecCC
Q 004918          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFFS  448 (724)
Q Consensus       388 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~-~~r~ig~h~~~  448 (724)
                      ||+|+.++|-..+    ...-+-++..+.++++++|+..+.+-  .-..+.+.+.. .-...++-.|.
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e  238 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWE  238 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccc
Confidence            9999999996655    43333345667789999886444333  33455555532 23344554443

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.79  E-value=3.7e-06  Score=88.93  Aligned_cols=100  Identities=13%  Similarity=0.011  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||..+|..+...|++|++||++++..  .            +             ..... .++ +.+++
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------H-------------PDFDY-VSLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------C-------------TTCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------H-------------hcccc-CCHHHHHhc
Confidence            689999999999999999999999999999987531  0            0             00111 133 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~  436 (724)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-.  ...+...+.
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999997776554333556677899998875444433  345555554

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.76  E-value=4.2e-06  Score=89.52  Aligned_cols=99  Identities=11%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|++|++||++++..               ..+             .. ..++ +.+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence            589999999999999999999999999999765421               001             01 1233 45679


Q ss_pred             CCEEEEcccCChH----HHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC
Q 004918          388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~  436 (724)
                      ||+|+.++|-..+    ...-+-++..+.++++++|+..+.+-  ....+.+.+.
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~  222 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE  222 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999996665    33322245667789999887444432  2334555553

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.71  E-value=7.3e-05  Score=77.97  Aligned_cols=119  Identities=18%  Similarity=0.298  Sum_probs=72.3

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCC--cEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      +||+|+| +|.+|.+++..|+..|+  +++++|+  ++++++.....+.+...    ...         .-.+.. ++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~----~~~---------~~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA----YDS---------NTRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT----TTC---------CCEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh----hCC---------CcEEEe-CCHH
Confidence            3899999 99999999999999886  7999999  87765432222222111    000         011222 3568


Q ss_pred             CcCCCCEEEEcccC--C------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcc----cC-CCCCEEEE
Q 004918          384 EFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TS-SQDRIIGA  444 (724)
Q Consensus       384 ~~~~aDlVIeav~e--~------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~----~~-~~~r~ig~  444 (724)
                      ++++||+||.+..-  .            ..+.+++.+.+.++.+ +.+|+..  +.|+..+...    .. .+.|++|+
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~--SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTT--SNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEEC--CSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe--CChHHHHHHHHHHHcCCCHHHeeec
Confidence            89999999998732  1            1355666677777754 5555432  4444433322    22 34566664

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.71  E-value=0.0002  Score=65.53  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~   47 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELR   47 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999999877643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.70  E-value=0.00013  Score=69.87  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|+|+|.||..+|..|.+. |++|+++|++++.++.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            4799999999999999999999 99999999999887654

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.69  E-value=0.00013  Score=70.78  Aligned_cols=142  Identities=14%  Similarity=0.134  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCC----ccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGR----FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (724)
                      .++.++...+...|..++.++..+-  +-|.+.|..    ...-+|+                .....++ +.|...+.|
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v----------------~aglaIy-d~m~~~~~~   98 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI----------------TDVISIV-DVINYISSD   98 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH----------------HHHHHHH-HHHHHSSSC
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH----------------HHHHHHH-HHHHhcCCC
Confidence            4899999999999998875433332  233444411    0000111                1233556 668889999


Q ss_pred             EEEEECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhh-------h-----------ccc--ccHHH
Q 004918          101 IVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR-------L-----------PRL--VGLSK  158 (724)
Q Consensus       101 ~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~-------l-----------~r~--~G~~~  158 (724)
                      |...+-|.|.+.|.-|++++|  .|++.++|++.+-...-|..  .|-+.-       +           .+.  .....
T Consensus        99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~--~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~  176 (205)
T 4gm2_A           99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP--FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNV  176 (205)
T ss_dssp             EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCC--SSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999999999999  59999999998766554431  111100       0           001  12334


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcc
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSE  187 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~  187 (724)
                      ..+++-....++|+||++.||||+|+..+
T Consensus       177 I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          177 ISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            44555566778999999999999998653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.66  E-value=4.8e-06  Score=88.05  Aligned_cols=100  Identities=15%  Similarity=0.041  Sum_probs=68.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|++|++||++++..  .            +.             .+.. .++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~~-------------~~~~-~~l~ell~~  198 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------ED-------------YCTQ-VSLDEVLEK  198 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------TT-------------TCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------Hh-------------cccc-CCHHHHHhh
Confidence            689999999999999999999999999999987531  0            00             0111 133 45689


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|...+...-+-++..+.++++++++..+.+  .....+.+.+.
T Consensus       199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  249 (331)
T 1xdw_A          199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE  249 (331)
T ss_dssp             CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence            99999999976554433324556678999988654433  33344555543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.62  E-value=9e-05  Score=67.52  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      +++|.|+|+|.+|..++..|.+.|++|+++|++++.++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~   44 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA   44 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            468999999999999999999999999999999877554

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.61  E-value=0.0001  Score=67.38  Aligned_cols=81  Identities=21%  Similarity=0.189  Sum_probs=57.2

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       308 ~~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      -++|+|||+    |.||..++.+|.+.|++|+.+|.+.+.+                             ..+....+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence            368999999    9999999999999999866666553211                             1123344443


Q ss_pred             C-cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          384 E-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       384 ~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      + .+.+|+||.++|  .+...+++.++.+ ...+.+++
T Consensus        65 el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~   99 (138)
T 1y81_A           65 ELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWF   99 (138)
T ss_dssp             GSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEE
T ss_pred             HhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEE
Confidence            3 457999999999  5777777777665 34455554

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.59  E-value=0.00019  Score=75.24  Aligned_cols=93  Identities=16%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc---ccCcc
Q 004918          310 KVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDYS  383 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~~  383 (724)
                      ||+|||+ |.+|.+++..|+..|  .+|+++|+++.  +.....        +.....        ..++..   +++++
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~--~~~a~d--------L~~~~~--------~~~l~~~~~t~d~~   63 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAAD--------LSHIET--------RATVKGYLGPEQLP   63 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHH--------HTTSSS--------SCEEEEEESGGGHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc--HHHHHH--------HhccCc--------CceEEEecCCCCHH
Confidence            8999998 999999999999988  69999999971  111111        111110        013443   35664


Q ss_pred             -CcCCCCEEEEccc--CCh------------HHHHHHHHHHHhhCCCCcEEEe
Q 004918          384 -EFKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       384 -~~~~aDlVIeav~--e~~------------~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                       ++++||+||.++.  ...            .+.+++.+.+.++++ +++|+.
T Consensus        64 ~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv  115 (314)
T 1mld_A           64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICI  115 (314)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE
T ss_pred             HHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE
Confidence             6999999999873  211            567777788888874 444443

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.59  E-value=0.00022  Score=77.45  Aligned_cols=119  Identities=14%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             cceEEEEcCCCCcHHH--HHHHHH--C---CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          308 VRKVAVIGGGLMGSGI--ATAHIL--N---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~i--A~~la~--~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      ..||+|||+|.. .+.  ...|+.  .   +.+|+++|+++++++... .+...+   ...          . .++..++
T Consensus         2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~~---~~~----------~-~~v~~t~   65 (417)
T 1up7_A            2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRL---VKD----------R-FKVLISD   65 (417)
T ss_dssp             CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHH---HTT----------S-SEEEECS
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHHH---hhC----------C-eEEEEeC
Confidence            369999999985 332  234455  3   568999999999877532 222211   110          0 2466677


Q ss_pred             Cc-cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          381 DY-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      |+ +++++||+||.++--                                  +..+..++.+++.+++  +++++.-|..
T Consensus        66 d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNP  143 (417)
T 1up7_A           66 TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNP  143 (417)
T ss_dssp             SHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCCh
Confidence            87 889999999999821                                  1134667788899988  6666543333


Q ss_pred             CCH-HHHhcccCCCCCEEEE
Q 004918          426 IDL-NIVGEKTSSQDRIIGA  444 (724)
Q Consensus       426 ~~~-~~~~~~~~~~~r~ig~  444 (724)
                      ..+ ++.........|++|+
T Consensus       144 vdi~t~a~~k~~p~~rviG~  163 (417)
T 1up7_A          144 SGHITEFVRNYLEYEKFIGL  163 (417)
T ss_dssp             HHHHHHHHHHTTCCSSEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEe
Confidence            222 2333223333477774

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.58  E-value=0.00016  Score=67.29  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=35.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++++.++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            58999999999999999999999999999999987554

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.57  E-value=0.00011  Score=77.37  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=65.4

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc---ccC
Q 004918          308 VRKVAVIG-GGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  381 (724)
Q Consensus       308 ~~kI~VIG-~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  381 (724)
                      .+||+|+| +|.+|.+++..|+..|  ++|+++|++++. ..+. .+        .....        ...+..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~~-dL--------~~~~~--------~~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVTA-DI--------SHMDT--------GAVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHHH-HH--------HTSCS--------SCEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHHH-Hh--------hcccc--------cceEEEEeCCCC
Confidence            36899999 7999999999999999  799999998761 1111 01        11100        012222   345


Q ss_pred             c-cCcCCCCEEEEcccC--C------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          382 Y-SEFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       382 ~-~~~~~aDlVIeav~e--~------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      + +++++||+||.++.-  .            ..+.+++.+.+.++.+ +.+|+..  +.|+..
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv~--SNPv~~  130 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNLI--SNPVNS  130 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC--CSSHHH
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEE--CCchHH
Confidence            5 668999999999842  1            1456677777887774 4554432  345544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.54  E-value=8.2e-05  Score=77.54  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|.+|++||+++++.+...           +.|.          ..+. ..++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence            6899999999999999999999999999999987654321           1110          0001 1223 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ||+||.++|...-.     ++..+.+++++++++
T Consensus       216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin  244 (300)
T 2rir_A          216 IDICINTIPSMILN-----QTVLSSMTPKTLILD  244 (300)
T ss_dssp             CSEEEECCSSCCBC-----HHHHTTSCTTCEEEE
T ss_pred             CCEEEECCChhhhC-----HHHHHhCCCCCEEEE
Confidence            99999999953211     123345667776654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.53  E-value=9.3e-05  Score=76.83  Aligned_cols=87  Identities=22%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|..+...|.+|++||++++..+.+.           +.|.          ..+. ..++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence            6899999999999999999999999999999987654321           1110          0000 1223 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      +|+||.++|...-. .    +..+.++++.++++.
T Consensus       214 aDvVi~~~p~~~i~-~----~~l~~mk~~~~lin~  243 (293)
T 3d4o_A          214 VDVCINTIPALVVT-A----NVLAEMPSHTFVIDL  243 (293)
T ss_dssp             CSEEEECCSSCCBC-H----HHHHHSCTTCEEEEC
T ss_pred             CCEEEECCChHHhC-H----HHHHhcCCCCEEEEe
Confidence            99999999853211 1    223456777777643

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.53  E-value=5.9e-05  Score=77.57  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||.+++..|.+.|++|+++||++++++...+.          .+             +...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence            589999999999999999999999999999999876553210          01             1222244 56789


Q ss_pred             CCEEEEcccCC
Q 004918          388 VDMVIEAVIES  398 (724)
Q Consensus       388 aDlVIeav~e~  398 (724)
                      +|+||.|+|..
T Consensus       187 aDiVi~atp~~  197 (275)
T 2hk9_A          187 VQVIVNTTSVG  197 (275)
T ss_dssp             CSEEEECSSTT
T ss_pred             CCEEEEeCCCC
Confidence            99999999844

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.46  E-value=0.00011  Score=67.84  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=61.2

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      ++|+|||+    |.||..++.+|.+.|++|+.+|.+.  +.+                             ..+....++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999977766654  211                             112333444


Q ss_pred             cC-cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhccc
Q 004918          383 SE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT  435 (724)
Q Consensus       383 ~~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~  435 (724)
                      ++ ...+|+|+.++|  .+...+++.++.+. ..+.+++ .+++.. .++.+..
T Consensus        65 ~el~~~~Dlvii~vp--~~~v~~v~~~~~~~-g~~~i~i-~~~~~~-~~l~~~a  113 (145)
T 2duw_A           65 ADVPEKVDMVDVFRN--SEAAWGVAQEAIAI-GAKTLWL-QLGVIN-EQAAVLA  113 (145)
T ss_dssp             TTCSSCCSEEECCSC--STHHHHHHHHHHHH-TCCEEEC-CTTCCC-HHHHHHH
T ss_pred             HHcCCCCCEEEEEeC--HHHHHHHHHHHHHc-CCCEEEE-cCChHH-HHHHHHH
Confidence            33 357899999999  45666777776653 4455554 344443 3444433

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.44  E-value=0.00064  Score=77.41  Aligned_cols=144  Identities=17%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEcCCCCccCC-CCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEECcccc
Q 004918           32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG-FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (724)
Q Consensus        32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  110 (724)
                      ...++.+.|+.+..|+.++.|+|.-.    |-| +++.....             ..+.+ +.+....|||||.+++ +.
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~~-------------I~~~i-~~~k~~gkpvva~~~~-aa  131 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQY-------------IGKAL-KEFRDSGKPVYAVGEN-YS  131 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHHH-------------HHHHH-HHHHHTTCCEEEEESC-EE
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHHH-------------HHHHH-HHHHhcCCeEEEEEcc-ch
Confidence            46788999999999999999999632    122 44432211             12333 3355567999999876 66


Q ss_pred             chhHHHHhhcCEEEEeCCceeeCccccc------------CccC---------Ccchhh-----------hhc-------
Q 004918          111 GGGLELAMGCHARIAAPKTQLGLPELTL------------GVIP---------GFGGTQ-----------RLP-------  151 (724)
Q Consensus       111 GgG~~lalacD~ria~~~a~f~~pe~~~------------G~~P---------~~g~~~-----------~l~-------  151 (724)
                      -+|.-|+++||.+++.+.+.++...+..            |+-+         ..+..+           .+.       
T Consensus       132 s~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~  211 (593)
T 3bf0_A          132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELW  211 (593)
T ss_dssp             HHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence            7889999999999999999988766643            2210         000000           000       


Q ss_pred             ----------ccccHHHHHHHHHc-------CCCCCHHHHHHCCCcceecCcchHHHHHH
Q 004918          152 ----------RLVGLSKAIEMMLL-------SKSITSEEGWKLGLIDAVVTSEELLKVSR  194 (724)
Q Consensus       152 ----------r~~G~~~a~~l~lt-------g~~i~a~eA~~~Glv~~vv~~~~l~~~a~  194 (724)
                                |-+......+++-.       +..++|++|++.||||++...+++.+...
T Consensus       212 ~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~  271 (593)
T 3bf0_A          212 QNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALT  271 (593)
T ss_dssp             HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHH
Confidence                      11222333334433       79999999999999999997766655543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.41  E-value=0.00017  Score=76.17  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  376 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  376 (724)
                      +||+|+|+ |.+|.+++..|+..|+       +|+++|++    +++++.....+.        .....      ....+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~--------~~~~~------~~~~i   71 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEID--------DCAFP------LLAGM   71 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHH--------TTTCT------TEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHh--------hhccc------ccCcE
Confidence            58999998 9999999999999886       89999999    544432111111        11000      12345


Q ss_pred             ccccCc-cCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          377 KGVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       377 ~~~~~~-~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      ..+++. +++++||+||.+..-              +..+.+++.+.+.+++.++++|+.
T Consensus        72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~  131 (329)
T 1b8p_A           72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLV  131 (329)
T ss_dssp             EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            555664 779999999988631              224556677788888745655543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.35  E-value=0.00051  Score=67.76  Aligned_cols=95  Identities=16%  Similarity=0.163  Sum_probs=59.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||.|+|+|.+|..+|..|.+.|++|+++|++++.++...+..    ...+-.|-.+ .+...           ...+.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~-----------~a~i~~   65 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILR-----------DAEVSK   65 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHH-----------HHTCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHH-----------hcCccc
Confidence            3799999999999999999999999999999999877643210    0000011111 00000           023689


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhh-CCCCcEEE
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA  420 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~ii~  420 (724)
                      ||+||.+++++.  ...+...+... .+...+++
T Consensus        66 ad~vi~~~~~d~--~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           66 NDVVVILTPRDE--VNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             TCEEEECCSCHH--HHHHHHHHHHHTSCCCEEEE
T ss_pred             CCEEEEecCCcH--HHHHHHHHHHHHcCCCeEEE
Confidence            999999998543  23334444443 44445554

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.33  E-value=0.00029  Score=77.91  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             ceEEEEcCCCCcHH--HHHHHHH----C--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          309 RKVAVIGGGLMGSG--IATAHIL----N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       309 ~kI~VIG~G~mG~~--iA~~la~----~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      .||+|||+|..|..  +...++.    .  +.+|+++|+++++++.....+++.....   +         ..-++..++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEEL---N---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHH---T---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHc---C---------CCeEEEEeC
Confidence            38999999997754  2222332    2  3479999999998876544333332211   1         012467788


Q ss_pred             Cc-cCcCCCCEEEEcc
Q 004918          381 DY-SEFKDVDMVIEAV  395 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav  395 (724)
                      |. +++++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            87 6799999999886

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.32  E-value=0.00011  Score=81.07  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+.           ..|             ... .++ +.+++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G-------------~~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEG-------------YRV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcC-------------CEe-CCHHHHHhc
Confidence            6899999999999999999999999999999987632211           111             111 233 56889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ||+||.++. ...+.   -.+..+.++++++|+...++
T Consensus       333 aDiVi~~~~-t~~lI---~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATG-NYHVI---NHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSS-SSCSB---CHHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCC-ccccc---CHHHHhhCCCCcEEEEcCCC
Confidence            999999983 22211   13445668899988754444

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.32  E-value=8.6e-05  Score=81.51  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+.           ..|             +.. .++ +.+++
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence            6899999999999999999999999999999987643321           111             111 233 56889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ||+||.+.. ...+   +-.+..+.++++++|+..+++
T Consensus       313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSST
T ss_pred             CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCC
Confidence            999999962 2221   112444568899988754444

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.31  E-value=0.0003  Score=74.68  Aligned_cols=95  Identities=20%  Similarity=0.207  Sum_probs=61.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.||..++..+..  ...+|++|||+++++++..+.+..    .  .| +          .+...++. +.+
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~----~--~g-~----------~~~~~~~~~eav  192 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE----Y--SG-L----------TIRRASSVAEAV  192 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT----C--TT-C----------EEEECSSHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh----c--cC-c----------eEEEeCCHHHHH
Confidence            589999999999999988754  356899999999988775443210    0  01 0          12233444 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ++||+||.|+|...  ...++.  .+.+++++.|...++
T Consensus       193 ~~aDiVi~aTps~~--~~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          193 KGVDIITTVTADKA--YATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             TTCSEEEECCCCSS--EEEEEC--GGGCCTTCEEEECSC
T ss_pred             hcCCEEEEeccCCC--CCceec--HHHcCCCCEEEECCC
Confidence            89999999998541  001111  135667776654433

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.26  E-value=0.00057  Score=68.50  Aligned_cols=86  Identities=20%  Similarity=0.117  Sum_probs=56.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      +|.||+|+|+|.||..++..+.+.+.+++. +|++++.                .             ..+..+++++.+
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~l   52 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIADV   52 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTTC
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHHH
Confidence            367999999999999999999988777654 7887652                0             123445666444


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      .++|+||+...  ++...+.   +.  +..+.-+++.|++++.
T Consensus        53 ~~~DVvIDft~--p~a~~~~---~~--l~~g~~vVigTTG~s~   88 (243)
T 3qy9_A           53 KGADVAIDFSN--PNLLFPL---LD--EDFHLPLVVATTGEKE   88 (243)
T ss_dssp             TTCSEEEECSC--HHHHHHH---HT--SCCCCCEEECCCSSHH
T ss_pred             hCCCEEEEeCC--hHHHHHH---HH--HhcCCceEeCCCCCCH
Confidence            49999998765  3333333   22  4555545555666644

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.23  E-value=0.00031  Score=71.59  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=49.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  388 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  388 (724)
                      +|+|||+|.||.+++..|.+.|++|+++||++++++...+.+          +             .. .+++ +. +++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~-------------~~-~~~~~~~-~~~  172 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------G-------------LR-AVPLEKA-REA  172 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------T-------------CE-ECCGGGG-GGC
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------c-------------cc-hhhHhhc-cCC
Confidence            799999999999999999999999999999998766543211          1             01 1233 44 889


Q ss_pred             CEEEEcccCC
Q 004918          389 DMVIEAVIES  398 (724)
Q Consensus       389 DlVIeav~e~  398 (724)
                      |+||.|+|..
T Consensus       173 Divi~~tp~~  182 (263)
T 2d5c_A          173 RLLVNATRVG  182 (263)
T ss_dssp             SEEEECSSTT
T ss_pred             CEEEEccCCC
Confidence            9999999844

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.23  E-value=0.0011  Score=70.46  Aligned_cols=98  Identities=12%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      +++.||+|||+|.||...+..+.+.  +++|+ ++|++++++++..+..                       .+...+++
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------~~~~~~~~   67 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-----------------------GARGHASL   67 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-----------------------CCEEESCH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCceeCCH
Confidence            3456899999999999999999887  77755 8899999876643210                       12345566


Q ss_pred             cC-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          383 SE-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       383 ~~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      ++ ++  ++|+|+.|+|....  .++.....+.  ...+++-..-+....+
T Consensus        68 ~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~a~~~~~  114 (354)
T 3q2i_A           68 TDMLAQTDADIVILTTPSGLH--PTQSIECSEA--GFHVMTEKPMATRWED  114 (354)
T ss_dssp             HHHHHHCCCSEEEECSCGGGH--HHHHHHHHHT--TCEEEECSSSCSSHHH
T ss_pred             HHHhcCCCCCEEEECCCcHHH--HHHHHHHHHC--CCCEEEeCCCcCCHHH
Confidence            33 43  79999999995433  3333333221  2335544444555543

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.23  E-value=0.0056  Score=62.58  Aligned_cols=152  Identities=13%  Similarity=0.104  Sum_probs=95.7

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.-|++.  .-+++....+.+.++++.+... .+-+|.|.-.|+.     -..+-.   . . ...+. .....+ .++.
T Consensus       125 v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgGa-----r~qEGi---~-s-l~q~a-ki~~~l-~~~s  191 (285)
T 2f9i_B          125 VAVMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGGA-----RMQEGI---I-S-LMQMG-KTSVSL-KRHS  191 (285)
T ss_dssp             EEEECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECSC-----CGGGHH---H-H-HHHHH-HHHHHH-HHHH
T ss_pred             EEEEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----chhhhh---h-h-HhHHH-HHHHHH-HHHH
Confidence            3345554  3789999999999999988865 4667777644332     222100   0 0 00111 111233 4466


Q ss_pred             cCCCcEEEEECccccchhHHH-HhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH
Q 004918           96 DCKKPIVAAVEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG  174 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~l-alacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA  174 (724)
                      ....|.|+++-|.|.||+... ++.+|+++|.++|.+++.....       ....+-+.+.          -.--+|+-+
T Consensus       192 ~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~v-------i~~~~~~~~~----------e~~~~Ae~~  254 (285)
T 2f9i_B          192 DAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRV-------IEQTINEKLP----------DDFQTAEFL  254 (285)
T ss_dssp             HTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHH-------HHHHHTSCCC----------TTTTBHHHH
T ss_pred             cCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHH-------HHHHhcccch----------HhHhhHHHH
Confidence            788999999999999998655 7899999999998887632211       1111111111          011247778


Q ss_pred             HHCCCcceecCcchHHHHHHHHHHH
Q 004918          175 WKLGLIDAVVTSEELLKVSRLWALD  199 (724)
Q Consensus       175 ~~~Glv~~vv~~~~l~~~a~~~a~~  199 (724)
                      .+.|+||.|++++++.+...++...
T Consensus       255 ~~~G~iD~Iv~~~e~r~~l~~~L~~  279 (285)
T 2f9i_B          255 LEHGQLDKVVHRNDMRQTLSEILKI  279 (285)
T ss_dssp             HHTTCCSEECCGGGHHHHHHHHHHH
T ss_pred             HhcCCccEEeChHHHHHHHHHHHHH
Confidence            8999999999988877766665543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.22  E-value=0.00038  Score=76.90  Aligned_cols=86  Identities=26%  Similarity=0.260  Sum_probs=61.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.||..+|+.+...|.+|+++|++++.++.+.+           .|.             .. .++ +.+++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga-------------~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF-------------DV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC-------------EE-ecHHHHHhC
Confidence            68999999999999999999999999999999987665421           121             00 122 34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +|+||++++...-+.    .+..+.++++++|+...
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECS
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeC
Confidence            999999987443222    23445578888876433

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.21  E-value=0.00087  Score=70.68  Aligned_cols=101  Identities=9%  Similarity=-0.030  Sum_probs=63.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      +++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.          .+            .....++++
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~------------~~~~~~~~~   60 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------LA------------IPVAYGSYE   60 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------TT------------CCCCBSSHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------cC------------CCceeCCHH
Confidence            3456899999999999999999885 67766 789999886654321          01            112344553


Q ss_pred             -CcC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          384 -EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       384 -~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                       .+.  ++|+|+.|+|....  .++.....+.  ...+++-...+....+..
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~vl~EKP~~~~~~e~~  108 (330)
T 3e9m_A           61 ELCKDETIDIIYIPTYNQGH--YSAAKLALSQ--GKPVLLEKPFTLNAAEAE  108 (330)
T ss_dssp             HHHHCTTCSEEEECCCGGGH--HHHHHHHHHT--TCCEEECSSCCSSHHHHH
T ss_pred             HHhcCCCCCEEEEcCCCHHH--HHHHHHHHHC--CCeEEEeCCCCCCHHHHH
Confidence             333  79999999995543  3333333322  223666555555555433

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.21  E-value=0.00047  Score=71.85  Aligned_cols=96  Identities=17%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHC-C--CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc---ccC
Q 004918          309 RKVAVIG-GGLMGSGIATAHILN-N--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  381 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  381 (724)
                      +||+||| +|.+|.+++..|+.. +  .+++++|+++ .++.-..++.        ....        ...+..   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~--------~~~~--------~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLS--------HIPT--------AVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHH--------TSCS--------SEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhh--------CCCC--------CceEEEecCCCc
Confidence            4899999 899999999999875 5  4899999987 3221111111        1100        012322   245


Q ss_pred             ccCcCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       382 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      ++++++||+||.+..-              +..+.+++.+.+.++++ +++++..
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvv  117 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGII  117 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe
Confidence            6889999999998731              33455666677888865 5555433

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.19  E-value=0.0011  Score=69.35  Aligned_cols=98  Identities=18%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC--c
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y  382 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~  382 (724)
                      ||+|+|+ |.+|..++..|+..|+  ++.++|+  ++++++.....+.+.. ..  .+.         ...+..+++  .
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~--~~~---------~~~i~~~~d~l~   69 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AG--TRS---------DANIYVESDENL   69 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TT--SCC---------CCEEEEEETTCG
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-Hh--cCC---------CeEEEeCCcchH
Confidence            8999999 9999999999998885  7999999  7765443222222211 00  000         012333333  5


Q ss_pred             cCcCCCCEEEEccc--C------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          383 SEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       383 ~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++++||+||.+.-  .            +..+.+++.+.+.+++  +.+|+.
T Consensus        70 ~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv  120 (313)
T 1hye_A           70 RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV  120 (313)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE
T ss_pred             HHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE
Confidence            78999999998862  1            2335556677777877  555543

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.16  E-value=0.00033  Score=73.92  Aligned_cols=102  Identities=16%  Similarity=0.171  Sum_probs=65.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      -||+|+|+ |.+|.+++..|+....       ++.++|+++..  ++-..-++..        ...      .....+..
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~--------~~~------~~~~~~~~   90 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED--------CAF------PLLDKVVV   90 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TTC------TTEEEEEE
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh--------cCc------cCCCcEEE
Confidence            59999997 9999999999998754       79999998643  2211111111        000      01123333


Q ss_pred             ccCc-cCcCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          379 VLDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       379 ~~~~-~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +++. +++++||+||.+.  |-            |..+.+++.+.+.++++++++|+..+.
T Consensus        91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A           91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence            4444 7899999999875  21            345666677778888888886654333

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.15  E-value=0.00057  Score=71.82  Aligned_cols=69  Identities=17%  Similarity=0.046  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.||..++..++.  ...+|++|||+++++++..+.+..       .+ +          .+. .++. +.+
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v  186 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS  186 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence            589999999999999999987  356899999999998876543321       01 0          122 3444 567


Q ss_pred             CCCCEEEEcccC
Q 004918          386 KDVDMVIEAVIE  397 (724)
Q Consensus       386 ~~aDlVIeav~e  397 (724)
                       ++|+||.|+|.
T Consensus       187 -~aDvVi~aTp~  197 (322)
T 1omo_A          187 -RCDVLVTTTPS  197 (322)
T ss_dssp             -SSSEEEECCCC
T ss_pred             -CCCEEEEeeCC
Confidence             89999999984

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.13  E-value=0.0086  Score=66.33  Aligned_cols=146  Identities=12%  Similarity=0.077  Sum_probs=96.2

Q ss_pred             EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHH--H
Q 004918           17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--N   92 (724)
Q Consensus        17 ~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~   92 (724)
                      .|.-+.+.  .-++.....+.+..+++.+..+ .+-+|.|.-.     .|+-+.+-        ...+.. ..+.+.  .
T Consensus       100 ~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-----gGaRmqEg--------~~~l~~-~~~i~~~~~  164 (530)
T 3iav_A          100 AVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-----GGARIQEG--------VASLGA-YGEIFRRNT  164 (530)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGT--------HHHHHH-HHHHHHHHH
T ss_pred             EEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcchhhh--------hhhHHH-HHHHHHHHH
Confidence            33444553  4789999999999999988765 4667777643     33334321        001111 112221  1


Q ss_pred             HHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCH
Q 004918           93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS  171 (724)
Q Consensus        93 ~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  171 (724)
                      .+.. -+|+|++|.|.|.|||......||++|++++ +.+++.                    |+....  ..+|+.+++
T Consensus       165 ~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~ge~v~~  221 (530)
T 3iav_A          165 HASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGF  221 (530)
T ss_dssp             HTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCH
T ss_pred             HHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhCCcCCh
Confidence            1222 4999999999999999988889999999875 877762                    322221  267899999


Q ss_pred             HHH-------HHCCCcceecCcc-hHHHHHHHHHHHH
Q 004918          172 EEG-------WKLGLIDAVVTSE-ELLKVSRLWALDI  200 (724)
Q Consensus       172 ~eA-------~~~Glv~~vv~~~-~l~~~a~~~a~~l  200 (724)
                      ++.       ...|++|.++++| +..+.+.++...+
T Consensus       222 e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l  258 (530)
T 3iav_A          222 EELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL  258 (530)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             hhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence            876       6899999999775 3555555555443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.12  E-value=0.00092  Score=69.69  Aligned_cols=98  Identities=12%  Similarity=-0.040  Sum_probs=62.3

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          307 GVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      ++.||+|||+|.||.. ++..+.+ .+++++ ++|++++++++..+..          |             +...+++ 
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------~-------------~~~~~~~~   61 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY----------R-------------IMPFDSIE   61 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH----------T-------------CCBCSCHH
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCCcCCHH
Confidence            3468999999999997 8888876 477777 7999999877643211          1             1123454 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      +.++++|+|+.|+|....  .++.....+.  ...+++....+....+.
T Consensus        62 ~ll~~~D~V~i~tp~~~h--~~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (308)
T 3uuw_A           62 SLAKKCDCIFLHSSTETH--YEIIKILLNL--GVHVYVDKPLASTVSQG  106 (308)
T ss_dssp             HHHTTCSEEEECCCGGGH--HHHHHHHHHT--TCEEEECSSSSSSHHHH
T ss_pred             HHHhcCCEEEEeCCcHhH--HHHHHHHHHC--CCcEEEcCCCCCCHHHH
Confidence            345689999999995443  3444333332  22355544555555543

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.12  E-value=0.0054  Score=67.90  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHH-HHhcCCCcEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVA  103 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~kp~Ia  103 (724)
                      .-++.....+.+..+++.+... .+-+|.|.-.     .|+.+.+-..        .+.... +.+.+ ....-..|+|+
T Consensus       118 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg~~--------sl~~~~-~i~~~~~~~s~~iP~Is  182 (531)
T 3n6r_B          118 GGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEGVD--------SLAGYG-EVFQRNIMASGVVPQIS  182 (531)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGTHH--------HHHHHH-HHHHHHHHTTTTSCEEE
T ss_pred             cccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCcccc--------hhhhHH-HHHHHHHHHhCCCCEEE
Confidence            3789999999999999988765 4567777643     4444433110        011111 22211 11224589999


Q ss_pred             EECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------H
Q 004918          104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W  175 (724)
Q Consensus       104 av~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~  175 (724)
                      +|.|.|.|||......||++|+.++ +.+++                    -|+....  ..+|+.+++++.       .
T Consensus       183 vv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~vI~--~~~ge~v~~E~LGGa~~h~~  240 (531)
T 3n6r_B          183 MIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPDVVK--TVTNEQVSAEELGGATTHTR  240 (531)
T ss_dssp             EECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHHHHBHHHHHH
T ss_pred             EEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHHHHH--HHhCCccChhhcchHHHHhh
Confidence            9999999999988888999999975 66554                    1222111  257899999998       8


Q ss_pred             HCCCcceecCcchHHHHHHHHHHHHH
Q 004918          176 KLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       176 ~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      +.|++|.+++.|+   .+.+.++++.
T Consensus       241 ~sG~~d~v~~~e~---~a~~~~r~ll  263 (531)
T 3n6r_B          241 KSSVADAAFENDV---EALAEVRRLV  263 (531)
T ss_dssp             TTSCCSEEESSHH---HHHHHHHHHH
T ss_pred             ccCcceEEeCCHH---HHHHHHHHHH
Confidence            9999999998753   3444444443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.11  E-value=0.00035  Score=72.98  Aligned_cols=91  Identities=14%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++|+|||+|.||..++..+...  ..+|++|||+  +.++..++++..+      |           -.+... +. +++
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g-----------~~~~~~-~~~eav  181 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------G-----------VPARMA-APADIA  181 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------T-----------SCEEEC-CHHHHH
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------C-----------CeEEEe-CHHHHH
Confidence            5899999999999999999763  4589999999  4444333222110      1           012223 44 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ++||+||.|+|....    ++.  .+.++++++|++..|.
T Consensus       182 ~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          182 AQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             HHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCCS
T ss_pred             hhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCCC
Confidence            899999999985322    221  2456777777655443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.11  E-value=0.0015  Score=69.28  Aligned_cols=97  Identities=16%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      +.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+.                      .+ ....+++ +.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------------------~g-~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA----------------------NG-AEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT----------------------TT-CEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------------------cC-CceeCCHHHH
Confidence            45899999999999999999886 67766 799999886653220                      11 2334555 34


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       385 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      ++  ++|+|+.|+|....  .++.....+.  ...+++....+....+.
T Consensus        61 l~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~~~~~~~~  105 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTH--VDLITRAVER--GIPALCEKPIDLDIEMV  105 (344)
T ss_dssp             TTCSCCCEEEECSCGGGH--HHHHHHHHHT--TCCEEECSCSCSCHHHH
T ss_pred             hcCCCCCEEEEeCCchhh--HHHHHHHHHc--CCcEEEECCCCCCHHHH
Confidence            45  79999999995443  3343333332  22366555555665543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.09  E-value=0.00046  Score=69.13  Aligned_cols=77  Identities=21%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc-C
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K  386 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~-~  386 (724)
                      ||+|||+|.||..++..+.+.|++| .+||+++. .++                               ..+++ +.+ .
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~~   49 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQR   49 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTTS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhcC
Confidence            7999999999999999999999997 69998852 110                               12333 234 6


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ++|+||+|+|.  ..-.++..   ..+..+..+++.+
T Consensus        50 ~~DvVv~~~~~--~~~~~~~~---~~l~~G~~vv~~~   81 (236)
T 2dc1_A           50 EMDVAVEAASQ--QAVKDYAE---KILKAGIDLIVLS   81 (236)
T ss_dssp             CCSEEEECSCH--HHHHHHHH---HHHHTTCEEEESC
T ss_pred             CCCEEEECCCH--HHHHHHHH---HHHHCCCcEEEEC
Confidence            89999999993  33333333   3334555555443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.09  E-value=0.00032  Score=75.70  Aligned_cols=85  Identities=20%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|.++|..+...|.+|+++|+++.....+.           ..|             ... .++ +.+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~~-~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQV-LLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Cee-cCHHHHHhh
Confidence            6899999999999999999999999999999987654321           111             111 233 56889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      ||+||.+.....-+.    .+..+.++++++|+..
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINv  297 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNI  297 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEEEC
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEEEe
Confidence            999998654211111    2344567889887643

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.08  E-value=0.00082  Score=71.68  Aligned_cols=151  Identities=12%  Similarity=0.067  Sum_probs=92.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||.|.-|.+-|.+|...|.+|++--|.....+. .    +.+.+..+.|             ....+-.++++.|
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~-~----~S~~~A~~~G-------------f~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEK-R----ASWRKATENG-------------FKVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTT-C----HHHHHHHHTT-------------CEEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccc-c----chHHHHHHCC-------------CEecCHHHHHHhC
Confidence            79999999999999999999999999887663321110 0    0011112222             3333334788999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCC--CEEEEecCCCC----------CCCCee
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPA----------HVMPLL  456 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~--r~ig~h~~~p~----------~~~~lv  456 (724)
                      |+|+..+|+  +.-.+++++|.+.++++..+.- +.++.+..  .....|.  .++-+-|-.|-          .-.|.+
T Consensus       100 DvV~~L~PD--~~q~~vy~~I~p~lk~G~~L~f-aHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l  174 (491)
T 3ulk_A          100 DLVINLTPD--KQHSDVVRTVQPLMKDGAALGY-SHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL  174 (491)
T ss_dssp             SEEEECSCG--GGHHHHHHHHGGGSCTTCEEEE-SSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred             CEEEEeCCh--hhHHHHHHHHHhhCCCCCEEEe-cCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence            999999994  4556789999999999998753 44544432  2222222  23333332111          122333


Q ss_pred             eEec-CCCCCHHHHHHHHHHHHHcCCe
Q 004918          457 EIVR-TERTSAQVILDLMTVGKIIKKV  482 (724)
Q Consensus       457 eii~-~~~t~~e~~~~~~~l~~~lGk~  482 (724)
                      ..|- ....+..+.+.+..+...+|..
T Consensus       175 iAVhqeqD~sG~a~~~AlayA~aiG~~  201 (491)
T 3ulk_A          175 IAVHPENDPKGEGMAIAKAWAAATGGH  201 (491)
T ss_dssp             EEECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred             EEEEeCCCCchhHHHHHHHHHHhcCCC
Confidence            3331 1233556788888999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.08  E-value=0.0027  Score=58.72  Aligned_cols=38  Identities=8%  Similarity=0.010  Sum_probs=33.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC-HHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLK  346 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~  346 (724)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++ ++..+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~   42 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ   42 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence            57999999999999999999999999999998 455443

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.05  E-value=0.00016  Score=73.15  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=34.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~  346 (724)
                      +|.|||+|.||.+++..|++.|. +|++++|+++++++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~  147 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA  147 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            79999999999999999999998 99999999987554

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.04  E-value=0.00032  Score=72.85  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=36.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|||+|.||.+++..|++.|. +|++++|++++++...
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la  182 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV  182 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            589999999999999999999998 9999999998876643

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.03  E-value=0.00047  Score=72.65  Aligned_cols=100  Identities=21%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|||||.|.+|..+|..+..-|.+|..||+.......             +.+             +. ..++ +.++.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~~  194 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLKE  194 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHhh
Confidence            68999999999999999999999999999987543111             011             11 1233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~~~~  436 (724)
                      ||+|+.++|-..+.+.-+=++....++++++|+ |++-   +.-..+...+.
T Consensus       195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence            999999999777755444455667789999886 5553   33345555554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.02  E-value=0.00037  Score=74.15  Aligned_cols=104  Identities=12%  Similarity=0.093  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHh--------cCC---CCHHHHHHhhcCcc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT--------RGK---LTQDKANNALKMLK  377 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~--------~g~---~~~~~~~~~~~~i~  377 (724)
                      .||+|||+|.||..+|+.+...|.+|+++|+++++++.+.+. .   ...+.        .+.   ++.+....      
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-G---a~~~~l~~~~~~~~gya~~~~~~~~~~------  254 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-G---AQWLDLGIDAAGEGGYARELSEAERAQ------  254 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-T---CEECCCC-------------CHHHHHH------
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C---CeEEeccccccccccchhhhhHHHHhh------
Confidence            689999999999999999999999999999999887765320 0   00000        000   01110000      


Q ss_pred             cccCc-cCcCCCCEEEEcc--cCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          378 GVLDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       378 ~~~~~-~~~~~aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ...++ +.++++|+||.++  |.... -.-+-++..+.++++.+|+..+
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~a-p~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPA-PRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCC-CCCBCHHHHHTSCTTCEEEETT
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCccc-ceeecHHHHhcCCCCcEEEEEe
Confidence            01122 5679999999986  42111 0011245556678899887543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.00  E-value=0.00041  Score=70.56  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|.|||+|.||.+++..|++.|.+|++++|+++++++.. ++          +             +. ..+++++.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~-~~~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CD-CFMEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CE-EESSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------Ce-EecHHHhccC
Confidence            5799999999999999999999999999999998876543 11          0             11 1123445589


Q ss_pred             CEEEEcccCC
Q 004918          389 DMVIEAVIES  398 (724)
Q Consensus       389 DlVIeav~e~  398 (724)
                      |+||.|+|-.
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999999843

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.98  E-value=0.0015  Score=68.46  Aligned_cols=97  Identities=10%  Similarity=0.012  Sum_probs=59.3

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      ++..||+|||+|.||.. ++..+.+ .|++|+ ++|+++++++...+..          |             +...+++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~   59 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSL   59 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcH
Confidence            34468999999999997 8888876 477876 8999998766532210          1             1123444


Q ss_pred             cCc-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          383 SEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       383 ~~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                      +++ .++|+|+.|+|.....  ++.....   ..+. +++....+....+
T Consensus        60 ~~l~~~~D~V~i~tp~~~h~--~~~~~al---~~G~~v~~eKP~~~~~~~  104 (319)
T 1tlt_A           60 SSLAASCDAVFVHSSTASHF--DVVSTLL---NAGVHVCVDKPLAENLRD  104 (319)
T ss_dssp             HHHHTTCSEEEECSCTTHHH--HHHHHHH---HTTCEEEEESSSCSSHHH
T ss_pred             HHhhcCCCEEEEeCCchhHH--HHHHHHH---HcCCeEEEeCCCCCCHHH
Confidence            433 6799999999955432  3333322   2343 5554444555544

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.98  E-value=0.00037  Score=74.92  Aligned_cols=98  Identities=19%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.+|..+|+.+...|.+|+++|+++++++.+.+..          |.-.       ........++ +.+++
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----------g~~~-------~~~~~~~~~l~~~l~~  231 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----------CGRI-------HTRYSSAYELEGAVKR  231 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSS-------EEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----------CCee-------EeccCCHHHHHHHHcC
Confidence            6899999999999999999999999999999998876543211          1000       0000000111 34568


Q ss_pred             CCEEEEcccCChH-HHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +|+||+|++-... ...-+.++..+.++++.+|+..+
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            9999998842221 11111234445677888776433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.002  Score=67.91  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.          .             .+. .+++ +.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~-------------~~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------Y-------------GCE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------T-------------TCE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------h-------------CCC-cCCHHHH
Confidence            46899999999999999999885 77876 799999886654321          0             122 3444 33


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       385 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                      ++  ++|+|+.|+|....  .++.....+.  ...+++....+....+..
T Consensus        59 l~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~~~~~~~~~  104 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTH--ADLIERFARA--GKAIFCEKPIDLDAERVR  104 (331)
T ss_dssp             HHCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEECSCSCSSHHHHH
T ss_pred             hcCCCCCEEEEeCCchhH--HHHHHHHHHc--CCcEEEecCCCCCHHHHH
Confidence            43  79999999995443  3343333322  233555555556655433

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.95  E-value=0.002  Score=69.29  Aligned_cols=85  Identities=21%  Similarity=0.327  Sum_probs=59.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++.....+.           ..|             .. ..++ +.++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G-------------~~-v~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDG-------------FR-LVKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcC-------------CE-eccHHHHHhc
Confidence            6899999999999999999999999999999987544321           111             11 1223 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      +|+||.| ++...+..   .+....++++++|+..
T Consensus       276 ADIVi~a-tgt~~lI~---~e~l~~MK~gailINv  306 (435)
T 3gvp_A          276 VDIVITC-TGNKNVVT---REHLDRMKNSCIVCNM  306 (435)
T ss_dssp             CSEEEEC-SSCSCSBC---HHHHHHSCTTEEEEEC
T ss_pred             CCEEEEC-CCCcccCC---HHHHHhcCCCcEEEEe
Confidence            9999997 44333211   2344557888887643

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.94  E-value=0.0028  Score=66.51  Aligned_cols=96  Identities=15%  Similarity=0.004  Sum_probs=59.6

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc-
Q 004918          309 RKVAVIGGGLMGS-GIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~-~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  385 (724)
                      .||+|||+|.||. .++..+.+. +++|+++|++++++++..+.          .|.           .....++.+.+ 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~~~l~   61 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRV-----------SATCTDYRDVLQ   61 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTC-----------CCCCSSTTGGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cCC-----------CccccCHHHHhh
Confidence            5899999999998 488888764 77888999999887654321          010           00023333555 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCC-cEEEecCCCCCHHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNI  430 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~  430 (724)
                      .++|+|++|+|...  -.++..+..+   .+ .+++....+.+..+
T Consensus        62 ~~~D~V~i~tp~~~--h~~~~~~al~---~Gk~V~~EKP~~~~~~~  102 (323)
T 1xea_A           62 YGVDAVMIHAATDV--HSTLAAFFLH---LGIPTFVDKPLAASAQE  102 (323)
T ss_dssp             GCCSEEEECSCGGG--HHHHHHHHHH---TTCCEEEESCSCSSHHH
T ss_pred             cCCCEEEEECCchh--HHHHHHHHHH---CCCeEEEeCCCcCCHHH
Confidence            68999999999433  3344433222   23 25554444555544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.93  E-value=0.00071  Score=72.55  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|+|+|.+|..+++.+...|.+|+++|+++++++.+.+...    ..+.....+..+..            +.++++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g----~~~~~~~~~~~~l~------------~~~~~~  230 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG----GRVITLTATEANIK------------KSVQHA  230 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT----TSEEEEECCHHHHH------------HHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC----ceEEEecCCHHHHH------------HHHhCC
Confidence            68999999999999999999999999999999987765432110    00000000111111            335689


Q ss_pred             CEEEEcccCCh-HHHHHHHHHHHhhCCCCcEEEecC
Q 004918          389 DMVIEAVIESV-PLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       389 DlVIeav~e~~-~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      |+||+|++-.. ....-+.++..+.++++.+|+..+
T Consensus       231 DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          231 DLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             SEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            99999997332 111112344455667777665433

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.00033  Score=75.20  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      .||+|||+|.||..+|+.+...|.+|+++|+++++++.+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  230 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA  230 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            5899999999999999999999999999999998876653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.89  E-value=0.0013  Score=70.90  Aligned_cols=88  Identities=18%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|             ... .++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~v-v~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEV-VTLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------cee-ccHHHHHhh
Confidence            6899999999999999999999999999999987543321           111             111 123 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  426 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (724)
                      ||+|+.+....--+.    .+....++++++|+ |++..
T Consensus       303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSSS
T ss_pred             CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCCC
Confidence            999999864221112    34445678998886 55543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.87  E-value=0.00093  Score=68.62  Aligned_cols=41  Identities=10%  Similarity=0.098  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|+|+|.||.+++..|++.|. +|++++|+++++++..+
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~  168 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE  168 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence            689999999999999999999996 99999999988776543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.84  E-value=0.0021  Score=65.58  Aligned_cols=40  Identities=20%  Similarity=0.084  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|||+|.||.+++..|+..|. +|++++|+.++++...
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la  160 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA  160 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            579999999999999999999997 8999999998876643

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.81  E-value=0.0026  Score=67.71  Aligned_cols=97  Identities=20%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      .||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..          |             +...+++ +.+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~~~~l   62 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY----------N-------------CAGDATMEALL   62 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH----------T-------------CCCCSSHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc----------C-------------CCCcCCHHHHh
Confidence            5899999999999999999877 78855 8899998876643210          1             2223454 334


Q ss_pred             --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       386 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                        .++|+|+.|+|.....  ++.....+.  ...+++....+....+..
T Consensus        63 ~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~~  107 (354)
T 3db2_A           63 AREDVEMVIITVPNDKHA--EVIEQCARS--GKHIYVEKPISVSLDHAQ  107 (354)
T ss_dssp             HCSSCCEEEECSCTTSHH--HHHHHHHHT--TCEEEEESSSCSSHHHHH
T ss_pred             cCCCCCEEEEeCChHHHH--HHHHHHHHc--CCEEEEccCCCCCHHHHH
Confidence              5799999999965543  333332221  233565555556555433

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.81  E-value=0.0013  Score=67.44  Aligned_cols=41  Identities=15%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|+|+|.||.+++..|++.|.+|++++|+++++++..+
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~  160 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAE  160 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            68999999999999999999999999999999988776543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.80  E-value=0.0025  Score=67.54  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  385 (724)
                      .||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                      +.....++++ .+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL----------------------GVEKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH----------------------TCSEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh----------------------CCCceeCCHHHHh
Confidence            5899999999999999999875 67766 7899998876543211                      1112344553 34


Q ss_pred             C--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       386 ~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      +  ++|+|+.|+|....  .++.....+.  ...+++-...+..+.+.
T Consensus        61 ~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~~~~~~e~  104 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTH--SELVIACAKA--KKHVFCEKPLSLNLADV  104 (344)
T ss_dssp             HCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEEESCSCSCHHHH
T ss_pred             cCCCCCEEEEcCCCcch--HHHHHHHHhc--CCeEEEECCCCCCHHHH
Confidence            4  79999999995433  3333333222  22355555555665543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.80  E-value=0.0028  Score=66.18  Aligned_cols=93  Identities=20%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++++...+                         .+...+++ +.
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHHH
Confidence            45899999999999999999886 6664 589999886543210                         02234455 33


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       385 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                      ++  ++|+|++|+|....  .++..+..   ..+. +++....+....+
T Consensus        65 l~~~~~D~V~i~tp~~~h--~~~~~~al---~~Gk~v~~eKP~~~~~~~  108 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATH--AEITLAAI---ASGKAVLVEKPLTLDLAE  108 (315)
T ss_dssp             HTCTTCCEEEEESCGGGH--HHHHHHHH---HTTCEEEEESSSCSCHHH
T ss_pred             hhCCCCCEEEEeCChHHH--HHHHHHHH---HCCCcEEEcCCCcCCHHH
Confidence            43  79999999994433  34443332   2333 5554455555543

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.78  E-value=0.016  Score=64.40  Aligned_cols=139  Identities=15%  Similarity=0.102  Sum_probs=91.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .-++.....+.+..+++.+..+ .+-+|.|+.     |.|+.+.+-...     ...+.+...... + + .-..|.|++
T Consensus       108 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-----l~~~~~i~~~~~-~-~-s~~iP~Isv  173 (523)
T 1on3_A          108 GGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFANV-K-L-SGVVPQIAI  173 (523)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHHH-H-H-TTTSCEEEE
T ss_pred             CCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-----HHHHHHHHHHHH-H-h-cCCCCEEEE
Confidence            4789999999999999988765 466777764     455555432110     001111111111 1 2 344999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH-----HHH--HC
Q 004918          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--KL  177 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~-----eA~--~~  177 (724)
                      +.|+|.||+......||++|+.+++.+++.                    |+.....  .+|+.++.+     +.+  +.
T Consensus       174 v~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~h~~~~  231 (523)
T 1on3_A          174 IAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGEDVTADELGGAEAHMAIS  231 (523)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHSHHHHHHTT
T ss_pred             EcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCCcCChHhcccHHHHhhcc
Confidence            999999999999999999999988887754                    2222211  457777764     323  69


Q ss_pred             CCcceecCcc-hHHHHHHHHHHH
Q 004918          178 GLIDAVVTSE-ELLKVSRLWALD  199 (724)
Q Consensus       178 Glv~~vv~~~-~l~~~a~~~a~~  199 (724)
                      |++|.+++++ ++.+.+.++...
T Consensus       232 G~vd~vv~d~~~~~~~~r~lL~~  254 (523)
T 1on3_A          232 GNIHFVAEDDDAAELIAKKLLSF  254 (523)
T ss_dssp             CCCSEEESSHHHHHHHHHHHHHT
T ss_pred             CceEEEeCCHHHHHHHHHHHHHh
Confidence            9999999854 455555555443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.76  E-value=0.03  Score=62.19  Aligned_cols=141  Identities=15%  Similarity=0.084  Sum_probs=90.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      --++.+...+.+..+++.+... .+-+|.|.-.|+     +.+.+-.....  ....+.... ..+ ..+.....|+|++
T Consensus       134 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgG-----ARl~~q~~~~~--~~~~~~~i~-~~~-~~ls~~giP~Isv  203 (555)
T 3u9r_B          134 GGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGG-----ANLPRQDEVFP--DREHFGRIF-FNQ-ANMSARGIPQIAV  203 (555)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGGGGTSS--STTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----CCCCCcceeec--ccccHHHHH-HHH-HHHhcCCCCEEEE
Confidence            3689999999999999988865 456777764333     33321111000  001122212 222 2355678999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeC-CceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------HH
Q 004918          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~~  176 (724)
                      |.|.|.|||......||++|+.+ ++.+++                    -|+... + ..+|+.+++++.       ..
T Consensus       204 v~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~vi-k-~~~ge~~~~e~LGGa~~h~~~  261 (555)
T 3u9r_B          204 VMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPPLV-K-AATGEVVSAEELGGADVHCKV  261 (555)
T ss_dssp             ECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHHHH-H-HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHHHH-H-HHhcCccChhhccchhhhhhc
Confidence            99999999999999999999875 454432                    121111 1 167899999998       88


Q ss_pred             CCCcceecCcchHHHHHHHHHHHH
Q 004918          177 LGLIDAVVTSEELLKVSRLWALDI  200 (724)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~l  200 (724)
                      .|++|.++++++   .+.+.++++
T Consensus       262 sGv~d~v~~de~---~a~~~~r~~  282 (555)
T 3u9r_B          262 SGVADHYAEDDD---HALAIARRC  282 (555)
T ss_dssp             TCSCSEEESSHH---HHHHHHHHH
T ss_pred             cCceeEEeCCHH---HHHHHHHHH
Confidence            999999997664   344444443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.74  E-value=0.019  Score=63.89  Aligned_cols=135  Identities=15%  Similarity=0.044  Sum_probs=89.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh--cCCCcEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIV  102 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~kp~I  102 (724)
                      .-++.....+.+..+++.+..+ .+-+|.|.-     |.|+.+.+-..        .+.. +.+.+ .++.  .-..|.|
T Consensus       121 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~--------sl~~-~~~i~-~~~~~~s~~iP~I  184 (548)
T 2bzr_A          121 GGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVV--------SLGL-YSRIF-RNNILASGVIPQI  184 (548)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTH--------HHHH-HHHHH-HHHHHTTTTSCEE
T ss_pred             cCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHH--------HHHH-HHHHH-HHHHHhcCCCcEE
Confidence            4789999999999999988765 566777765     45555543211        0111 11222 1122  3349999


Q ss_pred             EEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH-----HH--
Q 004918          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EG--  174 (724)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~-----eA--  174 (724)
                      +++.|+|.||+......||++|+.++ +.+++.                    |+.....  .+|+.++.+     +.  
T Consensus       185 svv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~  242 (548)
T 2bzr_A          185 SLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHM  242 (548)
T ss_dssp             EEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHH
T ss_pred             EEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHh
Confidence            99999999999988889999999986 777654                    3222211  457788764     22  


Q ss_pred             HHCCCcceecCcc-hHHHHHHHHH
Q 004918          175 WKLGLIDAVVTSE-ELLKVSRLWA  197 (724)
Q Consensus       175 ~~~Glv~~vv~~~-~l~~~a~~~a  197 (724)
                      .+.|++|.+++++ ++.+.+.++.
T Consensus       243 ~~sG~~d~vv~d~~~~~~~~r~ll  266 (548)
T 2bzr_A          243 AKSGTAHYAASGEQDAFDYVRELL  266 (548)
T ss_dssp             HTSSCCSEEESSHHHHHHHHHHHH
T ss_pred             hccCceeEEeCCHHHHHHHHHHHH
Confidence            3699999999754 3444444443

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.73  E-value=0.0035  Score=66.86  Aligned_cols=98  Identities=19%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      +.-||+|||+|.||...+..+.+. +++|+ ++|+++++++.+.           +.|             +...+++++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~g-------------~~~~~~~~~   59 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QKG-------------LKIYESYEA   59 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TTT-------------CCBCSCHHH
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hcC-------------CceeCCHHH
Confidence            345899999999999999988876 67765 6799998754321           111             233455533


Q ss_pred             -cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          385 -FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       385 -~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                       ++  ++|+|+.|+|.....  ++..+..+.  ...+++-...+....+..
T Consensus        60 ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--GkhVl~EKP~a~~~~ea~  106 (359)
T 3e18_A           60 VLADEKVDAVLIATPNDSHK--ELAISALEA--GKHVVCEKPVTMTSEDLL  106 (359)
T ss_dssp             HHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSCCSSHHHHH
T ss_pred             HhcCCCCCEEEEcCCcHHHH--HHHHHHHHC--CCCEEeeCCCcCCHHHHH
Confidence             33  789999999954432  333333221  223555544455555433

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.72  E-value=0.0019  Score=66.07  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+|.||.+++..|++.|.+|++++|++++++...
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la  159 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA  159 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            5899999999999999999999999999999998876543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.72  E-value=0.0034  Score=66.68  Aligned_cols=100  Identities=18%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             CCCcceEEEEcCCCCcH-HHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       305 ~~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      +|+..||+|||+|.||. .++..+.+. +++|+ ++|++++++++..+..          |             +...++
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------g-------------~~~~~~   80 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF----------G-------------GEPVEG   80 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH----------C-------------SEEEES
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc----------C-------------CCCcCC
Confidence            34456899999999998 788888887 77775 7899998866543211          1             222345


Q ss_pred             cc-Cc--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          382 YS-EF--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       382 ~~-~~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      ++ .+  .++|+|+.|+|.....  ++.....+.  ...+++--.-+....+.
T Consensus        81 ~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKP~a~~~~ea  129 (350)
T 3rc1_A           81 YPALLERDDVDAVYVPLPAVLHA--EWIDRALRA--GKHVLAEKPLTTDRPQA  129 (350)
T ss_dssp             HHHHHTCTTCSEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSCSSHHHH
T ss_pred             HHHHhcCCCCCEEEECCCcHHHH--HHHHHHHHC--CCcEEEeCCCCCCHHHH
Confidence            53 33  3689999999955443  343333322  22355544445555543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.71  E-value=0.00047  Score=72.63  Aligned_cols=98  Identities=18%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCC--c-----EEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNI--Y-----VVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~--~-----V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      .||+|+| +|.+|.++|..|+..|.  +     ++++|+++  +.++....++.+        ....      ....+..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~--------~~~~------~~~~~~~   69 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--------CALP------LLKDVIA   69 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TCCT------TEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh--------hhhc------ccCCEEE
Confidence            5899999 79999999999999887  6     99999975  233322111111        0000      1122333


Q ss_pred             ccC-ccCcCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCcEEE
Q 004918          379 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       379 ~~~-~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      +++ ++++++||+||.+.  |.            +..+.+++...+.++.+++.+++
T Consensus        70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vi  126 (333)
T 5mdh_A           70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (333)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            444 57899999999875  21            34566777788888887765333

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.71  E-value=0.0058  Score=64.61  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             CcceEEEEcCCCCcHHHHHHHH-H-CCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la-~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      ++.||+|||+|.||..++..+. + .|++| .++|+++++++...+          +.|            .....++++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g------------~~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELG------------VETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTC------------CSEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhC------------CCcccCCHH
Confidence            4568999999999999999988 4 47774 578999987665321          011            112234453


Q ss_pred             -CcC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          384 -EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       384 -~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                       .++  ++|+|++|+|....  .++.....   ..+. +++....+....+
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h--~~~~~~al---~~G~~v~~eKp~~~~~~~  110 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFH--PEMTIYAM---NAGLNVFCEKPLGLDFNE  110 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGH--HHHHHHHH---HTTCEEEECSCCCSCHHH
T ss_pred             HHhcCCCCCEEEEeCChHhH--HHHHHHHH---HCCCEEEEcCCCCCCHHH
Confidence             343  69999999994433  23333322   2344 4443344555554

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.67  E-value=0.0015  Score=67.11  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=38.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i  351 (724)
                      +++.|+|+|.+|.+++..|++.|. +|++++|++++++...+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            689999999999999999999998 6999999999887765544

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.67  E-value=0.04  Score=61.17  Aligned_cols=147  Identities=15%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      +.-+...  .-++.....+.+..+++.+..+ .+-+|.|+.     |.|+.+.+-...     ...+.+...... + + 
T Consensus        95 v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s-----l~~~~~i~~~~~-~-~-  160 (522)
T 1x0u_A           95 AYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS-----LEGYGAVFKMNV-M-A-  160 (522)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH-----HHHHHHHHHHHH-H-H-
T ss_pred             EEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH-----HHHHHHHHHHHH-H-h-
Confidence            3334443  4689999999999999988765 566777775     455655432110     001111111111 1 2 


Q ss_pred             cCCCcEEEEECccccchhHHHHhhcCEEEEeCC-c-eeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH-
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-T-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-  172 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a-~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~-  172 (724)
                      .-..|.|+++.|+|.||+......||++|+.++ + .+++                    -|+....  ..+|+.++.+ 
T Consensus       161 s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~--------------------aGP~vI~--~~~ge~~~~e~  218 (522)
T 1x0u_A          161 SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV--------------------TGPEITK--VVLGEEVSFQD  218 (522)
T ss_dssp             TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES--------------------SCHHHHH--HTTCCCCCHHH
T ss_pred             CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe--------------------cCHHHHH--HHhCCcCChhh
Confidence            345999999999999999999999999999987 7 6665                    1221111  1567777764 


Q ss_pred             ----HHH--HCCCcceecCc-chHHHHHHHHHHHH
Q 004918          173 ----EGW--KLGLIDAVVTS-EELLKVSRLWALDI  200 (724)
Q Consensus       173 ----eA~--~~Glv~~vv~~-~~l~~~a~~~a~~l  200 (724)
                          +.+  +.|++|.++++ .++.+.+.++...+
T Consensus       219 lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~l  253 (522)
T 1x0u_A          219 LGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYL  253 (522)
T ss_dssp             HHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHS
T ss_pred             cchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhc
Confidence                223  69999999985 45666666665544

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.59  E-value=0.0068  Score=63.69  Aligned_cols=94  Identities=16%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             eEEEEcCCCCcHHH-HHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-CcC
Q 004918          310 KVAVIGGGLMGSGI-ATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFK  386 (724)
Q Consensus       310 kI~VIG~G~mG~~i-A~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  386 (724)
                      ||+|||+|.||..+ +..+.+.|++|+ ++|++++++++..+.          .|            .....++++ .++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~----------~g------------~~~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE----------NG------------IGKSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------TT------------CSCCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHH----------cC------------CCcccCCHHHHhc
Confidence            79999999999998 777777788865 789999876653221          11            111234443 333


Q ss_pred             --CCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          387 --DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       387 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                        ++|+|++|+|....  .++.....   ..+. +++....+....+
T Consensus        60 ~~~~D~V~i~tp~~~h--~~~~~~al---~~Gk~v~~ekP~~~~~~~  101 (332)
T 2glx_A           60 DPDVDAVYVSTTNELH--REQTLAAI---RAGKHVLCEKPLAMTLED  101 (332)
T ss_dssp             CTTCCEEEECSCGGGH--HHHHHHHH---HTTCEEEECSSSCSSHHH
T ss_pred             CCCCCEEEEeCChhHh--HHHHHHHH---HCCCeEEEeCCCcCCHHH
Confidence              59999999994433  33333332   2344 4443334455544

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.58  E-value=0.0047  Score=56.31  Aligned_cols=82  Identities=13%  Similarity=0.063  Sum_probs=56.4

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+|||+    |.||..++.+|.+.||+  +|++|+.....                         ....+.+..++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            57999999    89999999999999997  67777763110                         0012333444544


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       385 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      + ...|+++.++|  .+...++++++.+.-.. .+++
T Consensus        67 l~~~vDlavi~vp--~~~~~~v~~~~~~~gi~-~i~~  100 (140)
T 1iuk_A           67 LKEPVDILDVFRP--PSALMDHLPEVLALRPG-LVWL  100 (140)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHHCCS-CEEE
T ss_pred             CCCCCCEEEEEeC--HHHHHHHHHHHHHcCCC-EEEE
Confidence            4 46899999999  67777777776654333 4543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.58  E-value=0.0026  Score=64.93  Aligned_cols=41  Identities=17%  Similarity=0.168  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  349 (724)
                      +++.|+|+|.+|.+++..|++.|. +|++++|+++++++..+
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~  162 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN  162 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            689999999999999999999996 99999999998776543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.55  E-value=0.00037  Score=71.39  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  346 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~  346 (724)
                      ++|.|||+|.||.+++..|++.|. +|++++|+++++++
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            579999999999999999999999 99999999886543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.55  E-value=0.0032  Score=66.94  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|+|+|+|.||..+|..|...|.+|+++|++++.+++.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999876654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.53  E-value=0.0032  Score=63.42  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      ++|.|||+|.+|+.+|..|++.|. +++++|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999998 899999987

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.52  E-value=0.0058  Score=64.64  Aligned_cols=97  Identities=15%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-H-CCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-
Q 004918          309 RKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  384 (724)
                      .||+|||+|.||...+..+. + .+++|+ ++|+++++++...+.          .|.           .....+++++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------~g~-----------~~~~~~~~~~l   61 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------YQL-----------NATVYPNDDSL   61 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------TTC-----------CCEEESSHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-----------CCeeeCCHHHH
Confidence            58999999999999999998 4 477765 789999887654321          010           1233455533 


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       385 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      ++  ++|+|+.|+|....  .++.....+.  ...+++-...+....+
T Consensus        62 l~~~~~D~V~i~tp~~~h--~~~~~~al~~--Gk~vl~EKP~a~~~~e  105 (344)
T 3mz0_A           62 LADENVDAVLVTSWGPAH--ESSVLKAIKA--QKYVFCEKPLATTAEG  105 (344)
T ss_dssp             HHCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEECSCSCSSHHH
T ss_pred             hcCCCCCEEEECCCchhH--HHHHHHHHHC--CCcEEEcCCCCCCHHH
Confidence            33  58999999995443  3333333221  2235554444555554

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.52  E-value=0.0026  Score=66.92  Aligned_cols=101  Identities=14%  Similarity=0.061  Sum_probs=59.8

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      +++.||+|||+|.||..++..+.+. +.+|+ ++|++++++++..+           ..           +.-...++++
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~-----------~~-----------~~~~~~~~~~   60 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-----------KY-----------HLPKAYDKLE   60 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CC-----------CCSCEESCHH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------Hc-----------CCCcccCCHH
Confidence            3456899999999999999988765 45554 78999887544211           10           1112345553


Q ss_pred             -CcC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          384 -EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       384 -~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                       .++  ++|+|+.|+|....  .++.....+.  ...+++-..-+....+..
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h--~~~~~~al~a--Gk~Vl~EKP~a~~~~e~~  108 (329)
T 3evn_A           61 DMLADESIDVIYVATINQDH--YKVAKAALLA--GKHVLVEKPFTLTYDQAN  108 (329)
T ss_dssp             HHHTCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEEESSCCSSHHHHH
T ss_pred             HHhcCCCCCEEEECCCcHHH--HHHHHHHHHC--CCeEEEccCCcCCHHHHH
Confidence             344  79999999995443  3333333222  223565555555555433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.51  E-value=0.01  Score=64.39  Aligned_cols=40  Identities=13%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|..+|..|.+.|++|+++|.+++.++.+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~   44 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR   44 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4699999999999999999999999999999999887653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.48  E-value=0.0017  Score=70.37  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      ++|+|||+|.||..++..+...|. +|+++|+++++++...+.+          |.          ..+. ..++ +.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----------g~----------~~~~-~~~l~~~l~  226 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG----------EAVR-FDELVDHLA  226 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC----------EECC-GGGHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC----------ceec-HHhHHHHhc
Confidence            589999999999999999999998 8999999998764432211          10          0011 1122 3457


Q ss_pred             CCCEEEEcccCCh
Q 004918          387 DVDMVIEAVIESV  399 (724)
Q Consensus       387 ~aDlVIeav~e~~  399 (724)
                      ++|+||+|++...
T Consensus       227 ~aDvVi~at~~~~  239 (404)
T 1gpj_A          227 RSDVVVSATAAPH  239 (404)
T ss_dssp             TCSEEEECCSSSS
T ss_pred             CCCEEEEccCCCC
Confidence            8999999997543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.47  E-value=0.0058  Score=65.06  Aligned_cols=101  Identities=15%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHH-H-CCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      |+..||+|||+|.||...+..+. + .+++|+ ++|+++++++...+..          |.           .....+++
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------g~-----------~~~~~~~~   79 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY----------AI-----------EAKDYNDY   79 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH----------TC-----------CCEEESSH
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh----------CC-----------CCeeeCCH
Confidence            44468999999999999999998 4 477765 7899998876643211          10           12334555


Q ss_pred             c-CcC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          383 S-EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       383 ~-~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      + .++  ++|+|+.|+|....  .++.....+.  ...+++-..-+....+.
T Consensus        80 ~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~a--Gk~Vl~EKPla~~~~e~  127 (357)
T 3ec7_A           80 HDLINDKDVEVVIITASNEAH--ADVAVAALNA--NKYVFCEKPLAVTAADC  127 (357)
T ss_dssp             HHHHHCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEEESSSCSSHHHH
T ss_pred             HHHhcCCCCCEEEEcCCcHHH--HHHHHHHHHC--CCCEEeecCccCCHHHH
Confidence            3 333  68999999995443  3444333332  22355554445555543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.44  E-value=0.0059  Score=66.87  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|+|+|+|.+|.++|..|+..|.+|+++|+++..+..+..           .+             ....+..+.+..+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv~~lee~~~~a  321 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQVLTLEDVVSEA  321 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECCGGGTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------CccCCHHHHHHhc
Confidence            68999999999999999999999999999999987655421           11             1112222557789


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      |+|+++.....-+..    +..+.++++.+|+...
T Consensus       322 DvVi~atG~~~vl~~----e~l~~mk~gaiVvNaG  352 (488)
T 3ond_A          322 DIFVTTTGNKDIIML----DHMKKMKNNAIVCNIG  352 (488)
T ss_dssp             SEEEECSSCSCSBCH----HHHTTSCTTEEEEESS
T ss_pred             CEEEeCCCChhhhhH----HHHHhcCCCeEEEEcC
Confidence            999988642222222    2345578888776443

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.41  E-value=0.0045  Score=65.99  Aligned_cols=99  Identities=12%  Similarity=0.065  Sum_probs=60.9

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      +..||+|||+|.||.. ++..+.+. +.+|+ ++|+++++++...+           .           .+.....++++
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~   61 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-----------F-----------ISDIPVLDNVP   61 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-----------T-----------SCSCCEESSHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------h-----------cCCCcccCCHH
Confidence            3458999999999985 88888775 67776 88999987654321           1           11233455664


Q ss_pred             C-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          384 E-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       384 ~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      + ++  +.|+|+.|+|  ...-.++..+..+.  ...+++-..-+....+.
T Consensus        62 ~ll~~~~vD~V~i~tp--~~~H~~~~~~al~a--GkhVl~EKPla~~~~e~  108 (359)
T 3m2t_A           62 AMLNQVPLDAVVMAGP--PQLHFEMGLLAMSK--GVNVFVEKPPCATLEEL  108 (359)
T ss_dssp             HHHHHSCCSEEEECSC--HHHHHHHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred             HHhcCCCCCEEEEcCC--cHHHHHHHHHHHHC--CCeEEEECCCcCCHHHH
Confidence            3 33  5699999999  43333444443332  22355544445555443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.40  E-value=0.0099  Score=54.40  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+|||+    |.+|..++..|.+.|++  +|+++++. +.                          ...+....++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            57999999    79999999999999997  56666642 00                          012333444544


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       385 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      + ..+|++|.++|  .+...+++.++.+.-. ..++.
T Consensus        74 l~~~vDlvvi~vp--~~~~~~vv~~~~~~gi-~~i~~  107 (144)
T 2d59_A           74 IPDKIEVVDLFVK--PKLTMEYVEQAIKKGA-KVVWF  107 (144)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHHTC-SEEEE
T ss_pred             cCCCCCEEEEEeC--HHHHHHHHHHHHHcCC-CEEEE
Confidence            4 47899999999  6777788877665433 34543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.36  E-value=0.02  Score=63.54  Aligned_cols=163  Identities=14%  Similarity=0.115  Sum_probs=101.3

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.-|+|..  -+++++..+.+.++++.+... .+-+|.|.-.++ |..|.+-.+          ........+.+ ..+.
T Consensus       329 via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~E~----------~G~~~~~Ak~l-~~~~  395 (522)
T 1x0u_A          329 IVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQEY----------KGIIRHGAKML-YAFA  395 (522)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHHHH----------HHHHHHHHHHH-HHHH
Confidence            33455543  589999999999999988754 567777764332 433332111          11122333455 5678


Q ss_pred             cCCCcEEEEECccccchhHHHHhh----cCEEEEeCCceeeCcccccCccCCcchhhhhccc-c---------cHHHHHH
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---------GLSKAIE  161 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lala----cD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~-~---------G~~~a~~  161 (724)
                      ....|.|+.|-|.|.|||.-....    +|+++|.+++.+++-..       -|.+..+-+. +         -.....+
T Consensus       396 ~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gp-------egaa~Il~r~~i~~~~d~~~~~~~l~~~  468 (522)
T 1x0u_A          396 EATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGP-------EGAVRILYRKEIQQASNPDDVLKQRIAE  468 (522)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCH-------HHHHHHHTSSSSSSSSSSSSSSHHHHHH
T ss_pred             hCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecCH-------HHHHHHHhhhhhhcccCHHHHHHHHHHH
Confidence            899999999999999998754443    99999999988875322       1111111111 1         0001110


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHc
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                      +  .-.--++..+.+.|+||.|+++.++.+......+.+..
T Consensus       469 y--~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          469 Y--RKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             H--HHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             H--HHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHhh
Confidence            0  00123567899999999999999887776666665543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.33  E-value=0.0072  Score=64.16  Aligned_cols=107  Identities=14%  Similarity=0.159  Sum_probs=63.8

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHHCCC--c---EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-c
Q 004918          308 VRKVAVIG-GGLMGSGIATAHILNNI--Y---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L  380 (724)
Q Consensus       308 ~~kI~VIG-~G~mG~~iA~~la~~G~--~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~  380 (724)
                      ..||+||| +|.+|.+++..++..+.  +   +.++|.+.+..+...+...-.+    ..+...      .+..+..+ .
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL----~h~~~p------~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMEL----EDSLYP------LLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH----HTTTCT------TEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhH----Hhhhhh------hcCCcEEecC
Confidence            36899999 79999999999999876  3   8887665433222111111111    111100      11223333 4


Q ss_pred             CccCcCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          381 DYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       381 ~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      +++++++||+||.+.  |-            |..+.+++...+.++..++++|+..|.
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            568999999999875  21            234555566667777667777765543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.32  E-value=0.0059  Score=63.46  Aligned_cols=74  Identities=15%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++.              .|.           .....+++.+.
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHHhC
Confidence            35899999999999999999874 67877 78999875432              110           01112344334


Q ss_pred             CCCCEEEEcccCChHHHHHHHHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSE  408 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~  408 (724)
                      .++|+||+|+|  ...-.++...
T Consensus        64 ~~~DvViiatp--~~~h~~~~~~   84 (304)
T 3bio_A           64 ESVDVALVCSP--SREVERTALE   84 (304)
T ss_dssp             SSCCEEEECSC--HHHHHHHHHH
T ss_pred             CCCCEEEECCC--chhhHHHHHH
Confidence            78999999998  3333344433

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.29  E-value=0.0054  Score=63.21  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|.|+|+|.||.++|..|++.| +|++++|+.++++...+.+....      +. .. ..     .+..++-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~-~~-~~-----~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NK-KF-GE-----EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TC-CH-HH-----HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------cc-cc-ce-----eEEEeeHHHhhCCC
Confidence            57999999999999999999999 99999999988776554432210      00 00 00     01111113567889


Q ss_pred             CEEEEccc
Q 004918          389 DMVIEAVI  396 (724)
Q Consensus       389 DlVIeav~  396 (724)
                      |+||.+++
T Consensus       195 DilVn~ag  202 (287)
T 1nvt_A          195 DIIINATP  202 (287)
T ss_dssp             CEEEECSC
T ss_pred             CEEEECCC
Confidence            99999987

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.0046  Score=66.04  Aligned_cols=38  Identities=34%  Similarity=0.365  Sum_probs=33.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      +||.|||+|.+|+.+|..|++ .++|+++|++.+.++++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~   54 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV   54 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence            479999999999999998865 58999999999887764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.23  E-value=0.0045  Score=63.42  Aligned_cols=39  Identities=15%  Similarity=0.016  Sum_probs=35.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  347 (724)
                      +++.|+|+|.+|.+++..|++.|. +|++++|+++++++.
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999998 899999999876653

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=96.23  E-value=0.037  Score=55.08  Aligned_cols=109  Identities=18%  Similarity=0.167  Sum_probs=77.7

Q ss_pred             ccccc-CccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhccc---CCC-CCEEEEecCCCC
Q 004918          376 LKGVL-DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT---SSQ-DRIIGAHFFSPA  450 (724)
Q Consensus       376 i~~~~-~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~---~~~-~r~ig~h~~~p~  450 (724)
                      +..++ |.|+++++|++|.=.|-.- ....+.+++.+++++++|| +||.++|...+...+   .+. -.+..+||-.=|
T Consensus       129 VkVtsDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII-~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVP  206 (358)
T 2b0j_A          129 LKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIV-THACTIPTTKFAKIFKDLGREDLNITSYHPGCVP  206 (358)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEE-EECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCT
T ss_pred             cEeecchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEE-ecccCCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            44444 4589999999999998533 2347889999999999987 578888877555443   332 356777875433


Q ss_pred             CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       451 ~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      .. ..-....-...++|.++++..+.+..|+.+.++.
T Consensus       207 gt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP  242 (358)
T 2b0j_A          207 EM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP  242 (358)
T ss_dssp             TT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence            22 2223344445689999999999999999999873

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.21  E-value=0.0029  Score=67.58  Aligned_cols=40  Identities=28%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~  207 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE  207 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            7899999999999999999999999999999999877654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.20  E-value=0.0099  Score=60.69  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=35.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      ++||.|.|+|.+|+.++..|++.|++|++.+|+++..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            478999999999999999999999999999999876544

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.16  E-value=0.0031  Score=65.70  Aligned_cols=42  Identities=14%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~  350 (724)
                      +++.|+|+|.+|.+++..|++.|. +|++++|+   .+++++..++
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~  200 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEK  200 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHH
Confidence            689999999999999999999998 89999999   7776665443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.11  E-value=0.0031  Score=69.35  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      ++++|.|+|+|.||..++..|++.|++|+++||++++++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            3578999999999999999999999999999999887654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.10  E-value=0.0082  Score=58.84  Aligned_cols=39  Identities=8%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHH-HCCCcEEEEeCCHH-HHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHI-LNNIYVVLKEVNSE-YLLK  346 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la-~~G~~V~l~d~~~~-~~~~  346 (724)
                      |++|.|.|+ |.+|..++..|+ +.|++|++.+|+++ .++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            456999995 999999999999 89999999999988 6543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.08  E-value=0.0023  Score=69.31  Aligned_cols=39  Identities=26%  Similarity=0.160  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      .+|+|||+|.+|..++..+...|.+|+++|++++.++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999876654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.04  E-value=0.011  Score=63.99  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=37.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~  350 (724)
                      |+||.|+|+|.+|..++..|++.|   .+|+++||+++++++..+.
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~   46 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS   46 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH
Confidence            468999999999999999999998   3899999999988776543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.01  E-value=0.027  Score=55.40  Aligned_cols=129  Identities=12%  Similarity=0.132  Sum_probs=78.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||+|.+|..-+..|.++|.+|++++.+... ++.           +.+.+.++         .+...-..+.+.+
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~-----------l~~~~~i~---------~i~~~~~~~dL~~   91 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE-----------WEAKGQLR---------VKRKKVGEEDLLN   91 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH-----------HHHTTSCE---------EECSCCCGGGSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-----------HHHcCCcE---------EEECCCCHhHhCC
Confidence            68999999999999999999999999999876432 111           22223221         1111112256889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCC--CCCCeeeEecCCCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  465 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveii~~~~t~  465 (724)
                      +|+||-|. ++.++...+..    .+..+ |.+. ...-+.     .         ..|+.|.  ..++++..|.+.+.+
T Consensus        92 adLVIaAT-~d~~~N~~I~~----~ak~g-i~VN-vvD~p~-----~---------~~f~~Paiv~rg~l~iaIST~G~s  150 (223)
T 3dfz_A           92 VFFIVVAT-NDQAVNKFVKQ----HIKND-QLVN-MASSFS-----D---------GNIQIPAQFSRGRLSLAISTDGAS  150 (223)
T ss_dssp             CSEEEECC-CCTHHHHHHHH----HSCTT-CEEE-C----------C---------CSEECCEEEEETTEEEEEECTTSC
T ss_pred             CCEEEECC-CCHHHHHHHHH----HHhCC-CEEE-EeCCcc-----c---------CeEEEeeEEEeCCEEEEEECCCCC
Confidence            99999775 45565555443    34433 4432 222110     0         1122222  345677777777889


Q ss_pred             HHHHHHHHHHHHH
Q 004918          466 AQVILDLMTVGKI  478 (724)
Q Consensus       466 ~e~~~~~~~l~~~  478 (724)
                      |.....++.-++.
T Consensus       151 P~la~~iR~~ie~  163 (223)
T 3dfz_A          151 PLLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9888888887764

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=95.97  E-value=0.024  Score=60.34  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=59.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  384 (724)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++++...+.          .|. .        ......+++++ 
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~----------~~~-~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NNY-P--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TTC-C--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-C--------CCCeeeCCHHHH
Confidence            35899999999999999998875 5665 5789999876553221          110 0        01223445533 


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       385 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                      ++  ++|+|++|+|....  .++....   +..+. +++-...+....+
T Consensus        67 l~~~~~D~V~i~tp~~~h--~~~~~~a---l~aGk~V~~EKP~a~~~~e  110 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLH--VEWAIKA---AEKGKHILLEKPVAMNVTE  110 (362)
T ss_dssp             HHCTTCCEEEECCCGGGH--HHHHHHH---HTTTCEEEECSSCSSSHHH
T ss_pred             hcCCCCCEEEEcCChHHH--HHHHHHH---HHCCCeEEEecCCcCCHHH
Confidence            33  68999999994433  3333332   33444 4443334555543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=95.92  E-value=0.023  Score=59.67  Aligned_cols=96  Identities=13%  Similarity=0.021  Sum_probs=59.6

Q ss_pred             cceEEEEcCCCCcH-HHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-
Q 004918          308 VRKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  384 (724)
Q Consensus       308 ~~kI~VIG~G~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  384 (724)
                      ..||+|||+|.||. .++..+...|++| .++|+++++++...+.                      .+.....+++++ 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence            35899999999996 6777777778885 6889999876654321                      111233455533 


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       385 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                      ++  ++|+|++|+|.+...  ++.....   ..+. +++--..+....+
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al---~aGkhVl~EKP~a~~~~e  105 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDRA--ELALRTL---DAGKDFFTAKPPLTTLEQ  105 (336)
T ss_dssp             HTCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEECSSCCSCHHH
T ss_pred             hhCCCCCEEEEeCChhhHH--HHHHHHH---HCCCcEEEeCCCCCCHHH
Confidence            33  689999999955442  3333322   2333 5554344555544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.87  E-value=0.0042  Score=66.85  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999999999999998876654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.84  E-value=0.044  Score=54.14  Aligned_cols=39  Identities=18%  Similarity=0.035  Sum_probs=35.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      -++|.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            368999998 999999999999999999999999987654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.83  E-value=0.099  Score=58.05  Aligned_cols=137  Identities=12%  Similarity=0.124  Sum_probs=85.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .-++.....+.+..+++.+... .+-+|.|.-.     .|+-+.+-...     ...+.+.....   .......|+|++
T Consensus       111 gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dS-----gGAR~qeg~~~-----l~g~~~~~~~~---~~~s~~iP~Isv  176 (527)
T 1vrg_A          111 GGSLGEMHAKKIVKLLDLALKM-GIPVIGINDS-----GGARIQEGVDA-----LAGYGEIFLRN---TLASGVVPQITV  176 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-----CSBCGGGTHHH-----HHHHHHHHHHH---HHHTTTSCEEEE
T ss_pred             CccccHHHHHHHHHHHHHHHHc-CCCEEEEECC-----CCCCccchhHH-----HHHHHHHHHHH---HHhCCCCCEEEE
Confidence            4689999999999999988765 4556666543     33333321110     00111111111   123456999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH-----HHH--H
Q 004918          105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--K  176 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~-----eA~--~  176 (724)
                      |.|.|.|||......||++|+.++ +.+++                    .|+... +. .+|+.++.+     +.+  +
T Consensus       177 v~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi-~~-~~ge~v~~e~lggae~~~~~  234 (527)
T 1vrg_A          177 IAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVI-KA-VTGEEISQEDLGGAMVHNQK  234 (527)
T ss_dssp             EEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHH-HH-HHCCCCCHHHHHBHHHHHHT
T ss_pred             EeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHH-HH-HhCCCCCccccccHHHHhhc
Confidence            999999999988889999999987 66443                    222211 11 457777764     222  6


Q ss_pred             CCCcceecCcc-hHHHHHHHHH
Q 004918          177 LGLIDAVVTSE-ELLKVSRLWA  197 (724)
Q Consensus       177 ~Glv~~vv~~~-~l~~~a~~~a  197 (724)
                      .|++|.+++++ ++.+.+.++.
T Consensus       235 ~G~vd~vv~d~~~~~~~~~~~L  256 (527)
T 1vrg_A          235 SGNAHFLADNDEKAMSLVRTLL  256 (527)
T ss_dssp             SCCCSEEESSHHHHHHHHHHHH
T ss_pred             ccceEEEecCHHHHHHHHHHHH
Confidence            99999999854 4555444443

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.83  E-value=0.0084  Score=62.29  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=35.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~  349 (724)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .+++++..+
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~  193 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK  193 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHH
Confidence            689999999999999999999998 89999999   666655443

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.82  E-value=0.031  Score=61.05  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=60.2

Q ss_pred             CCcceEEEEcCCCCcH-HHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      ++..||+|||+|.||. .++..+.+. +++| .++|++++.++...+.          .| +..       ..+...+++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~~~-------~~~~~~~~~  142 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNF  142 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CCc-------ccccccCCH
Confidence            3446899999999997 898888765 5665 5889999876653221          11 000       012234555


Q ss_pred             cC-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHH
Q 004918          383 SE-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  430 (724)
Q Consensus       383 ~~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~  430 (724)
                      ++ ++  ++|+|++|+|....  .++.....+   .+. +++-...+....+
T Consensus       143 ~~ll~~~~vD~V~iatp~~~h--~~~~~~al~---aGk~Vl~EKPla~~~~e  189 (433)
T 1h6d_A          143 DKIAKDPKIDAVYIILPNSLH--AEFAIRAFK---AGKHVMCEKPMATSVAD  189 (433)
T ss_dssp             GGGGGCTTCCEEEECSCGGGH--HHHHHHHHH---TTCEEEECSSCCSSHHH
T ss_pred             HHHhcCCCCCEEEEcCCchhH--HHHHHHHHH---CCCcEEEcCCCCCCHHH
Confidence            43 44  79999999995443  233333322   333 5554334455544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.78  E-value=0.011  Score=58.73  Aligned_cols=38  Identities=16%  Similarity=-0.042  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|+|+|.+|..++..|.+.|+ |+++|++++.++.+
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~   47 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL   47 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence            589999999999999999999999 99999999876653

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.77  E-value=0.017  Score=62.63  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCC----CHHHHHHh--hcCccccc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKL----TQDKANNA--LKMLKGVL  380 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~----~~~~~~~~--~~~i~~~~  380 (724)
                      -||+|||+|.||..++..+.+. |.+ |.++|+++++++...++.-   .   ....+    +..+....  .+....++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~y---G---~~~~~~~~~~~~~i~~a~~~g~~~v~~   97 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAY---G---DEENAREATTESAMTRAIEAGKIAVTD   97 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHH---S---SSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhc---C---CccccccccchhhhhhhhccCCceEEC
Confidence            4799999999999999887654 555 5667999998776543210   0   00000    11111111  12345567


Q ss_pred             CccC-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCCCCCC
Q 004918          381 DYSE-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMP  454 (724)
Q Consensus       381 ~~~~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~~  454 (724)
                      |+++ ++  +.|+|++|+|.......-....++.   ..-+++.+. .....   ++.+.......+             
T Consensus        98 D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~A---GKHVv~~nk-~l~~~eg~eL~~~A~e~Gvv-------------  160 (446)
T 3upl_A           98 DNDLILSNPLIDVIIDATGIPEVGAETGIAAIRN---GKHLVMMNV-EADVTIGPYLKAQADKQGVI-------------  160 (446)
T ss_dssp             CHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHT---TCEEEECCH-HHHHHHHHHHHHHHHHHTCC-------------
T ss_pred             CHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHc---CCcEEecCc-ccCHHHHHHHHHHHHHhCCe-------------
Confidence            7743 43  6899999997422222222222322   223443332 22221   222222111111             


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                         +....+..+..+..+.++.+.+|..++.++
T Consensus       161 ---l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 ---YSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ---EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ---eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence               112223347778889999999999999986

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=95.76  E-value=0.025  Score=59.41  Aligned_cols=98  Identities=11%  Similarity=0.039  Sum_probs=60.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      .||+|||+|.||...+..+.+.+   ++ |.++|++++++++..+..          +            .-...+++++
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~----------~------------~~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKH----------D------------IPKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHH----------T------------CSCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc----------C------------CCcccCCHHH
Confidence            58999999999999999887654   23 567899998876643211          1            1123455533


Q ss_pred             -c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          385 -F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       385 -~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                       +  .++|+|+.|+|.....  ++..+..+.  ...+++-..-+....+..
T Consensus        61 ll~~~~vD~V~i~tp~~~H~--~~~~~al~~--GkhVl~EKP~a~~~~e~~  107 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHK--AAVMLCLAA--GKAVLCEKPMGVNAAEVR  107 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSSSSHHHHH
T ss_pred             HhcCCCCCEEEECCCcHHHH--HHHHHHHhc--CCEEEEECCCCCCHHHHH
Confidence             3  3699999999955443  333333222  233565555555555433

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.73  E-value=0.0035  Score=61.53  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      ||.|.|+ |.+|+.++..|++.|++|++.+|+++.+..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            6999998 999999999999999999999999887553

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.0074  Score=66.51  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=36.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~  347 (724)
                      ++++|.|+|+|.+|..++..|++. |++|++++|++++++..
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            457899999999999999999998 78999999999876654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.67  E-value=0.11  Score=57.77  Aligned_cols=163  Identities=12%  Similarity=0.074  Sum_probs=101.0

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCC
Q 004918           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (724)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (724)
                      |+|..  -+++++-.....++++.++. ..+-+|.|.=.+ .|..|.+-++.          .......+++ ..+....
T Consensus       337 ~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtp-G~~~G~~~E~~----------g~~~~~A~~~-~a~~~~~  403 (527)
T 1vrg_A          337 NQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTP-GYLPGVAQEHG----------GIIRHGAKLL-YAYSEAT  403 (527)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHHHHT----------THHHHHHHHH-HHHHHCC
T ss_pred             EcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCC-CCcCchhhHHh----------HHHHHHHHHH-HHHhcCC
Confidence            45543  58999999999999988864 356666664322 35444432211          1223344555 5678899


Q ss_pred             CcEEEEECccccchhHHHHhh----cCEEEEeCCceeeCcccccCccCCcchhhhhcccc-----cHHHHHH-HH--HcC
Q 004918           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MM--LLS  166 (724)
Q Consensus        99 kp~Iaav~G~a~GgG~~lala----cD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~-----G~~~a~~-l~--ltg  166 (724)
                      .|+|+.|-|.|.|||.--...    +|+++|.++++++       .++.-|.+..+-+.-     -....++ +.  +.-
T Consensus       404 vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  476 (527)
T 1vrg_A          404 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQ  476 (527)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999998887644333    8998888887776       333334333332211     1111111 22  111


Q ss_pred             CCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc
Q 004918          167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (724)
Q Consensus       167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (724)
                      +.-++..+.+.|+||.|+++.++........+.+..+
T Consensus       477 ~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~~  513 (527)
T 1vrg_A          477 QFANPYIAASRGYVDMVIDPRETRKYIMRALEVCETK  513 (527)
T ss_dssp             HTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred             hhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhcC
Confidence            2357788999999999999988777666665555433

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=95.63  E-value=0.012  Score=61.52  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=56.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  385 (724)
                      .||+|||+|.||..++..+.+. +.++ .++|++++.  +.            ..             .+..++++++ +
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~~-------------gv~~~~d~~~ll   56 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------KT-------------PVFDVADVDKHA   56 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------SS-------------CEEEGGGGGGTT
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------cC-------------CCceeCCHHHHh
Confidence            4899999999999999999876 5664 578988653  10            00             1223445533 4


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHHH
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV  431 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~~  431 (724)
                      .++|+||+|+|..... ..    +...+..+. +|++.+.+..+.++
T Consensus        57 ~~~DvViiatp~~~h~-~~----~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           57 DDVDVLFLCMGSATDI-PE----QAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTCSEEEECSCTTTHH-HH----HHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             cCCCEEEEcCCcHHHH-HH----HHHHHHCCCEEEECCCCcCCHHHH
Confidence            7899999999855432 22    223333344 44444444555444

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.61  E-value=0.0089  Score=61.15  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +++.|||.|. +|.++|..|...|..|+++++....++.                                   .+.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            6899999866 8999999999999999999985433220                                   023568


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.+++-..-+..       ..+++++++++...
T Consensus       211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  240 (300)
T 4a26_A          211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVGT  240 (300)
T ss_dssp             CSEEEECSCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCcH-------HhcCCCcEEEEEec
Confidence            9999999984322222       34688988876443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.57  E-value=0.015  Score=59.21  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHH-CCCcEE-EEeCCHH
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSE  342 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~-~G~~V~-l~d~~~~  342 (724)
                      +..||+|+|+ |.||..++..+.+ .|++|+ ++|++++
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~   42 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS   42 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence            3458999998 9999999998774 578877 7788764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.55  E-value=0.01  Score=60.36  Aligned_cols=102  Identities=15%  Similarity=0.095  Sum_probs=58.5

Q ss_pred             CCcceEEEEc-CCCCcHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIG-GGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG-~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      |+|.||+|+| +|.||..++..+.+. +++++. +|++......            ...+.+.     .....+..++++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G------------~d~gel~-----g~~~gv~v~~dl   67 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG------------QDAGAFL-----GKQTGVALTDDI   67 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT------------SBTTTTT-----TCCCSCBCBCCH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc------------ccHHHHh-----CCCCCceecCCH
Confidence            3467999999 799999999988765 667665 6887532100            0001000     000123345566


Q ss_pred             c-CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          383 S-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       383 ~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      + .+.++|+||++.+  ++...+......+   .+.-+++.|++++..
T Consensus        68 ~~ll~~~DVVIDfT~--p~a~~~~~~~al~---~G~~vVigTTG~s~~  110 (272)
T 4f3y_A           68 ERVCAEADYLIDFTL--PEGTLVHLDAALR---HDVKLVIGTTGFSEP  110 (272)
T ss_dssp             HHHHHHCSEEEECSC--HHHHHHHHHHHHH---HTCEEEECCCCCCHH
T ss_pred             HHHhcCCCEEEEcCC--HHHHHHHHHHHHH---cCCCEEEECCCCCHH
Confidence            3 4678999999986  5544444444333   344444555555443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.54  E-value=0.0065  Score=61.34  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +++.|||.| .+|.++|..|...|..|++++++...++                                     +.+++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~  193 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS  193 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence            689999987 5899999999999999999986532222                                     34568


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.+++-..-++.       +.+++++++++..+
T Consensus       194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  223 (276)
T 3ngx_A          194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGI  223 (276)
T ss_dssp             SSEEEECSSCTTCBCG-------GGCCTTCEEEECCC
T ss_pred             CCEEEECCCCCccccH-------hhccCCcEEEEecc
Confidence            9999999974322222       34688888876543

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.54  E-value=0.034  Score=58.75  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=49.2

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      ++|-||||||+|.||.. .+..+... +.+|+ ++|++++++++..++.                      +.-...+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------------------g~~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF----------------------SVPHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH----------------------TCSEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------------------CCCeeeCCH
Confidence            45679999999999975 45666654 66765 7899999877643311                      111234566


Q ss_pred             cC-c--CCCCEEEEcccCChH
Q 004918          383 SE-F--KDVDMVIEAVIESVP  400 (724)
Q Consensus       383 ~~-~--~~aDlVIeav~e~~~  400 (724)
                      ++ +  .+.|+|+.|+|....
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEeCCCchh
Confidence            43 3  468999999995544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.084  Score=56.07  Aligned_cols=98  Identities=7%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c
Q 004918          309 RKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  385 (724)
                      -||+|||+|.+|. .++..+...|.+| .++|++++++++..+.                      .+.....+++++ +
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~ll   84 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEIL   84 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHHh
Confidence            5899999999995 5677777788885 5789999987664321                      112334556633 3


Q ss_pred             --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       386 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                        .+.|+|+.|+|.  ..-.++.....+.  ...+++-..-+....+..
T Consensus        85 ~~~~vD~V~I~tp~--~~H~~~~~~al~a--GkhVl~EKPla~~~~ea~  129 (361)
T 3u3x_A           85 EDENIGLIVSAAVS--SERAELAIRAMQH--GKDVLVDKPGMTSFDQLA  129 (361)
T ss_dssp             TCTTCCEEEECCCH--HHHHHHHHHHHHT--TCEEEEESCSCSSHHHHH
T ss_pred             cCCCCCEEEEeCCh--HHHHHHHHHHHHC--CCeEEEeCCCCCCHHHHH
Confidence              358999999994  3333444443332  233665555555555433

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.53  E-value=0.031  Score=59.52  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      ++-||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+.                         .......++++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------------------~~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------------------LPDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------------------CTTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------------------CCCCcEECCHH
Confidence            3468999999999997 66666654 67765 789998764310                         01233445653


Q ss_pred             -CcC--CCCEEEEcccCChH
Q 004918          384 -EFK--DVDMVIEAVIESVP  400 (724)
Q Consensus       384 -~~~--~aDlVIeav~e~~~  400 (724)
                       .++  +.|+|++|+|....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATH   80 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence             334  78999999995444

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.51  E-value=0.035  Score=55.86  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999998 789998763

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.47  E-value=0.02  Score=60.04  Aligned_cols=36  Identities=17%  Similarity=0.103  Sum_probs=32.6

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHCCCcEEEEeCCHH
Q 004918          307 GVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~  342 (724)
                      .++||.|||.|.+|.+ +|..|.+.|++|+++|.++.
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            4689999999999996 99999999999999998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.47  E-value=0.022  Score=62.74  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=37.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      +||.|+|+|.+|..+|..|...||+|+++|.+++.++.+.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4799999999999999999999999999999999987754

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.47  E-value=0.027  Score=59.81  Aligned_cols=95  Identities=15%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             CcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      ++-||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+             +            .......++++
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~   58 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------D------------FPDAEVVHELE   58 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------H------------CTTSEEESSTH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------h------------CCCCceECCHH
Confidence            3458999999999997 56666554 67764 78999865221             0            11233455663


Q ss_pred             C-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          384 E-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       384 ~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      + ++  +.|+|++|+|.....  ++.....+.  ...+++--.-+....+
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H~--~~~~~al~a--GkhVl~EKPla~~~~e  104 (358)
T 3gdo_A           59 EITNDPAIELVIVTTPSGLHY--EHTMACIQA--GKHVVMEKPMTATAEE  104 (358)
T ss_dssp             HHHTCTTCCEEEECSCTTTHH--HHHHHHHHT--TCEEEEESSCCSSHHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH--HHHHHHHHc--CCeEEEecCCcCCHHH
Confidence            3 44  789999999965543  333332221  2235554433445443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.45  E-value=0.0086  Score=58.38  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      +||.|+|+ |.+|+.++..|++.|++|++++|+++.++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            37999996 999999999999999999999999877543

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.43  E-value=0.021  Score=59.96  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~  341 (724)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            48999997 9999999999999996       899999975

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.39  E-value=0.014  Score=59.72  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||.|. +|..+|..|...|..|++++++.+.+.                                     +.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  208 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK  208 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence            6899999995 799999999999999999985532221                                     34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.|++...-++.       +.++++++|++...
T Consensus       209 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  238 (301)
T 1a4i_A          209 GDILVVATGQPEMVKG-------EWIKPGAIVIDCGI  238 (301)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCcccCCH-------HHcCCCcEEEEccC
Confidence            9999999974322222       23578888886544

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.34  E-value=0.053  Score=59.38  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc----
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL----  380 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----  380 (724)
                      +..||+|||+|.||...+..+.+. |++| .++|++++++++..+.+.       +.|.          ......+    
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~   81 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGND   81 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTT
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCC
Confidence            345899999999999999888874 6675 588999998776543221       1110          0112233    


Q ss_pred             Ccc-CcC--CCCEEEEcccCChH
Q 004918          381 DYS-EFK--DVDMVIEAVIESVP  400 (724)
Q Consensus       381 ~~~-~~~--~aDlVIeav~e~~~  400 (724)
                      +++ .++  +.|+|++|+|....
T Consensus        82 ~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           82 DYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             THHHHTTCTTCCEEEECCCGGGH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            553 344  68999999995543

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.14  E-value=0.019  Score=61.07  Aligned_cols=97  Identities=12%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      +++-||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+                         ........+++
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~   57 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSF   57 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCS
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCH
Confidence            34568999999999997 67677665 67765 78999765211                         01123345666


Q ss_pred             cC-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          383 SE-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       383 ~~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      ++ ++  +.|+|++|+|.....  ++.....+.  ...+++--.-+....+.
T Consensus        58 ~~ll~~~~vD~V~i~tp~~~H~--~~~~~al~a--GkhVl~EKP~a~~~~ea  105 (362)
T 3fhl_A           58 KELTEDPEIDLIVVNTPDNTHY--EYAGMALEA--GKNVVVEKPFTSTTKQG  105 (362)
T ss_dssp             HHHHTCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSCCSSHHHH
T ss_pred             HHHhcCCCCCEEEEeCChHHHH--HHHHHHHHC--CCeEEEecCCCCCHHHH
Confidence            33 44  489999999954432  333333222  22355544445555443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.13  E-value=0.0089  Score=58.73  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=33.9

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      |+||.|.|+ |.+|+.++..|++.|++|++.+|+++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            578999996 9999999999999999999999998753

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.08  E-value=0.15  Score=56.58  Aligned_cols=163  Identities=15%  Similarity=0.085  Sum_probs=101.5

Q ss_pred             eCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcC
Q 004918           20 LINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (724)
Q Consensus        20 l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (724)
                      =|+|..  -.++++-.+...++++.+++ .++-+|.|.=. +.|..|.+-++          ....+...+++ ..+.+.
T Consensus       332 an~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~~A~~l-~a~a~~  398 (523)
T 1on3_A          332 ANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYSEA  398 (523)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHC
T ss_pred             EecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CCcCcchHHHH----------hhHHHHHHHHH-HHHhcC
Confidence            355543  58999999999999988865 35666666433 23555554221          11233444555 568889


Q ss_pred             CCcEEEEECccccchhHHHHhh----cCEEEEeCCceeeCcccccCccCCcchhhhhcccc-----cHHHHHH-HHH--c
Q 004918           98 KKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MML--L  165 (724)
Q Consensus        98 ~kp~Iaav~G~a~GgG~~lala----cD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~-----G~~~a~~-l~l--t  165 (724)
                      ..|+|+.|-|.+.|||.--...    +|+++|.++++++       .++.-|.+..+-+.-     -....++ +.-  .
T Consensus       399 ~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~  471 (523)
T 1on3_A          399 TVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQ  471 (523)
T ss_dssp             CSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHH
Confidence            9999999999999888744433    7888887777766       443334333332221     0111111 211  1


Q ss_pred             CCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHc
Q 004918          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                      -..-++..+.+.|+||.|+++.++........+.+..
T Consensus       472 ~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~  508 (523)
T 1on3_A          472 NAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT  508 (523)
T ss_dssp             HHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhc
Confidence            1125678899999999999998877766665555443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.06  E-value=0.016  Score=58.84  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +++.|||.|. .|.++|..|...|..|++++++...++                                     +.+++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~  203 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence            6899999876 699999999999999999986543221                                     34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.+++-..-++.       +.+++++++++...
T Consensus       204 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  233 (285)
T 3p2o_A          204 ADLIIVAAGCVNLLRS-------DMVKEGVIVVDVGI  233 (285)
T ss_dssp             CSEEEECSSCTTCBCG-------GGSCTTEEEEECCC
T ss_pred             CCEEEECCCCCCcCCH-------HHcCCCeEEEEecc
Confidence            9999999973222222       34688888876443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.04  E-value=0.077  Score=57.99  Aligned_cols=71  Identities=14%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          308 VRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       308 ~~kI~VIG~----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      ..||+|||+    |.||...+..+.+.  +++| .++|++++++++..+.          .|.          ..+...+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~----------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LKL----------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------CcceeeC
Confidence            358999999    99999999999886  6775 5889999886654321          010          0112345


Q ss_pred             CccC-c--CCCCEEEEcccCC
Q 004918          381 DYSE-F--KDVDMVIEAVIES  398 (724)
Q Consensus       381 ~~~~-~--~~aDlVIeav~e~  398 (724)
                      ++++ +  .++|+|++|+|..
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHH
T ss_pred             CHHHHhcCCCCCEEEEeCCcH
Confidence            5533 3  3689999999943

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.03  E-value=0.0083  Score=59.61  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=34.4

Q ss_pred             CCCcceEEEEcC-CCCcHHHHHHHHHCC-CcEEEEeCCHHHH
Q 004918          305 PRGVRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYL  344 (724)
Q Consensus       305 ~~~~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~  344 (724)
                      +++|++|.|.|+ |.+|..++..|++.| ++|++++|+++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            456788999995 999999999999999 8999999998754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.02  E-value=0.014  Score=60.58  Aligned_cols=91  Identities=18%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-----c--c
Q 004918          309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-----V--L  380 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~--~  380 (724)
                      ++|.|||.|.| |..+|..|+..|..|+++||+..++..              +...-.    .  .....     +  .
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~la----~--~~~~~t~~~~t~~~  237 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGESLK----L--NKHHVEDLGEYSED  237 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCCSS----C--CCCEEEEEEECCHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHHHh----h--hcccccccccccHh
Confidence            68999999976 999999999999999999998432111              000000    0  00111     1  2


Q ss_pred             Cc-cCcCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCcEEEecCCCC
Q 004918          381 DY-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI  426 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (724)
                      ++ +.+++||+||.|++-..- +..       +.+++++++++..+..
T Consensus       238 ~L~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          238 LLKKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSSSC
T ss_pred             HHHHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCCCc
Confidence            33 567899999999974222 222       2357888888766554

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=94.99  E-value=0.044  Score=58.88  Aligned_cols=96  Identities=14%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-
Q 004918          309 RKVAVIGGG-LMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  384 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  384 (724)
                      .||+|||+| .||...+..+.+. +.+|+ ++|++++++++..+..                       .+...+++++ 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-----------------------GIPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-----------------------TCCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-----------------------CCCeECCHHHH
Confidence            489999999 9999999998875 56655 7899998876543211                       1223455533 


Q ss_pred             c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          385 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       385 ~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      +  .++|+|++|+|....  .++.....+.  ...+++-...+....+.
T Consensus        60 l~~~~vD~V~i~tp~~~H--~~~~~~al~a--Gk~Vl~EKP~a~~~~e~  104 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFH--CEHVVQASEQ--GLHIIVEKPLTLSRDEA  104 (387)
T ss_dssp             HHHSCCSEEEECSCGGGH--HHHHHHHHHT--TCEEEECSCCCSCHHHH
T ss_pred             HcCCCCCEEEEcCCcHHH--HHHHHHHHHC--CCceeeeCCccCCHHHH
Confidence            3  369999999995443  2333333322  22355544445555443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.98  E-value=0.018  Score=58.52  Aligned_cols=71  Identities=14%  Similarity=0.093  Sum_probs=52.5

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +++.|||.|. +|..+|..|...|..|++++++...++                                     +.+++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  204 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  204 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence            6899999876 799999999999999999986532211                                     34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ||+||.+++-..-+..       +.+++++++++..
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg  233 (285)
T 3l07_A          205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVG  233 (285)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECC
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCcEEEEec
Confidence            9999999973222222       3467888887644

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.98  E-value=0.04  Score=56.50  Aligned_cols=42  Identities=19%  Similarity=0.125  Sum_probs=37.0

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|+| +|.+|.+++..|++.|.+|++++|++++++...+.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~  162 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS  162 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence            5789999 89999999999999999999999998877665443

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.94  E-value=0.091  Score=55.26  Aligned_cols=109  Identities=12%  Similarity=0.120  Sum_probs=59.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCC-CHHHH-HHhhcCcccccCc-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKA-NNALKMLKGVLDY-  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-  382 (724)
                      |.||+|+|+|.+|..++..+..+ +++|+. .|.+++......+.     +...-.|.. ...+. .-.-+.+....+. 
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchH
Confidence            35899999999999999999876 567554 46665554432210     000111222 11111 1111123322233 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +.+.++|+|++|.|....  .+...  ..++..++.++++.+.
T Consensus        77 ~~~~~vDiV~eatg~~~s--~~~a~--~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIG--KQNLE--NIYKPHKVKAILQGGE  115 (343)
T ss_dssp             GTGGGCSEEEECCCTTHH--HHHHH--HTTTTTTCEEEECTTS
T ss_pred             HhccCCCEEEECCCcccc--HHHHH--HHHHHCCCEEEECCCc
Confidence            334699999999984432  22221  3566667766665443

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.89  E-value=0.011  Score=60.00  Aligned_cols=72  Identities=15%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|.|||.|. .|..+|..|...|..|++++++.+.+.                                     +.+++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  202 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN  202 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence            6899999996 699999999999999999986553322                                     24567


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.+++...-++.       +.++++++|++...
T Consensus       203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi  232 (288)
T 1b0a_A          203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGI  232 (288)
T ss_dssp             CSEEEECSCCTTCBCT-------TTSCTTCEEEECCC
T ss_pred             CCEEEECCCCcCcCCH-------HHcCCCcEEEEccC
Confidence            9999999973322222       23578888876443

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=94.80  E-value=0.1  Score=56.25  Aligned_cols=100  Identities=16%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             CcceEEEEcCCC---CcHHHHHHHHHCC-CcEE--EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          307 GVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       307 ~~~kI~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      +.-||+|||+|.   ||...+..+...+ ++|+  ++|++++++++..++          .| +         ......+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g-~---------~~~~~~~   70 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LG-V---------DSERCYA   70 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TT-C---------CGGGBCS
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hC-C---------CcceeeC
Confidence            345899999999   9999988887765 6776  579999987664321          11 0         0012345


Q ss_pred             CccC-c-------CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          381 DYSE-F-------KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       381 ~~~~-~-------~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      ++++ +       .+.|+|+.|+|.....  ++.....+.  ...+++--.-+....+
T Consensus        71 ~~~~ll~~~~~~~~~vD~V~i~tp~~~H~--~~~~~al~a--GkhVl~EKPla~~~~e  124 (398)
T 3dty_A           71 DYLSMFEQEARRADGIQAVSIATPNGTHY--SITKAALEA--GLHVVCEKPLCFTVEQ  124 (398)
T ss_dssp             SHHHHHHHHTTCTTCCSEEEEESCGGGHH--HHHHHHHHT--TCEEEECSCSCSCHHH
T ss_pred             CHHHHHhcccccCCCCCEEEECCCcHHHH--HHHHHHHHC--CCeEEEeCCCcCCHHH
Confidence            5533 3       2489999999955443  443333332  2235543333444443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.78  E-value=0.15  Score=52.21  Aligned_cols=94  Identities=16%  Similarity=0.199  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCccCc-
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF-  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-  385 (724)
                      .+|..||+|..|.+... +++ .|.+|+.+|++++.++.+++.+++.       |.          .++++. .|...+ 
T Consensus       124 ~rVLDIGcG~G~~ta~~-lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~  185 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTGIL-LSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVID  185 (298)
T ss_dssp             CEEEEECCCSSCHHHHH-HHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGG
T ss_pred             CEEEEECCCccHHHHHH-HHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCC
Confidence            68999999997644333 344 5889999999999999887654321       10          122221 111111 


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       386 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                       ...|+|+.+..  ..-+..+++++.+.++|+..++..
T Consensus       186 d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          186 GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence             46799997654  345678999999999998877643

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.76  E-value=0.33  Score=53.62  Aligned_cols=161  Identities=14%  Similarity=0.106  Sum_probs=98.5

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.=|+|..  -.++++-.+...+.++.+++. ++-+|.|.=.+ .|-.|.+-++          ....+...+++ .++.
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDtp-Gf~~G~~~E~----------~Gi~~~gAk~l-~a~a  408 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDVP-GFLPGTSQEY----------GGVIKHGAKLL-YAYG  408 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SBCCSHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCCC-CCCCCHHHHH----------hhHHHHHHHHH-HHHH
Confidence            33456654  589999999999999877754 56677764332 3544543221          12234445666 6688


Q ss_pred             cCCCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhh-ccccc---HHHHHHHHHcCC
Q 004918           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVG---LSKAIEMMLLSK  167 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l-~r~~G---~~~a~~l~ltg~  167 (724)
                      ....|+|+.|-|.+.|||.--..    .+|+++|.++++++.       ++.-|.+..+ .+.+-   ....+.--+.-+
T Consensus       409 ~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~~~~y~~~  481 (531)
T 3n6r_B          409 EATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQHTADYEER  481 (531)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHHHHHHHHH
T ss_pred             hCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence            99999999999999988864333    289998888887764       3323322222 22111   011110011112


Q ss_pred             CCCHHHHHHCCCcceecCcchHHHHHHHHHH
Q 004918          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWAL  198 (724)
Q Consensus       168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  198 (724)
                      .-++-.|.+.|+||.|++|.+.........+
T Consensus       482 ~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~  512 (531)
T 3n6r_B          482 FANPFVASERGFVDEVIQPRSTRKRVARAFA  512 (531)
T ss_dssp             HSSSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred             hcCHHHHHhcCccCcccCHHHHHHHHHHHHH
Confidence            2456678889999999999987766554443

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.74  E-value=0.051  Score=56.97  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEeCCH---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc-
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-  380 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-  380 (724)
                      .|.||+|+|+ |.+|..+...|.++ .+++..+..+.   ..-+..    ......+  .+.          ..+.+.. 
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~----------~~~~v~~~   66 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGI----------VELPLQPM   66 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTT----------CCCBEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCc----------cceeEecc
Confidence            3579999995 99999999999884 56777664433   211110    0000000  010          0122222 


Q ss_pred             -CccCc-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          381 -DYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       381 -~~~~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                       +.+.+ +++|+||+|+|  ...-+++..++.   ..++.++++++...+
T Consensus        67 ~~~~~~~~~~Dvvf~a~p--~~~s~~~~~~~~---~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           67 SDISEFSPGVDVVFLATA--HEVSHDLAPQFL---EAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SSGGGTCTTCSEEEECSC--HHHHHHHHHHHH---HTTCEEEECSSTTSS
T ss_pred             CCHHHHhcCCCEEEECCC--hHHHHHHHHHHH---HCCCEEEEcCCcccc
Confidence             34455 89999999999  555566665553   457888899887654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.66  E-value=0.021  Score=57.94  Aligned_cols=72  Identities=17%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +++.|||.|. .|.++|..|...|..|+++.+....++                                     +.+++
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~  204 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR  204 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence            6899999865 899999999999999999976432211                                     24678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      ||+||.+++-..-+..       +.++++++|++..+
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  234 (286)
T 4a5o_A          205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVGI  234 (286)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCS
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCeEEEEecc
Confidence            9999999973222222       34678888876443

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=94.65  E-value=0.092  Score=55.21  Aligned_cols=97  Identities=10%  Similarity=0.005  Sum_probs=60.1

Q ss_pred             cceEEEEcCC-CCcHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          308 VRKVAVIGGG-LMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       308 ~~kI~VIG~G-~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      .-||+|||+| .||...+..+.+.  +.+| .++|++++++++..++.                      +.....++++
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------------------~~~~~~~~~~   75 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV----------------------GNPAVFDSYE   75 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH----------------------SSCEEESCHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh----------------------CCCcccCCHH
Confidence            3589999999 8999999998876  4565 67899999876643211                      1123345663


Q ss_pred             C-c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          384 E-F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       384 ~-~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      + +  .+.|+|++|+|....  .++.....+.  ...+++--.-+....+
T Consensus        76 ~ll~~~~vD~V~i~tp~~~H--~~~~~~al~a--GkhVl~EKPla~~~~e  121 (340)
T 1zh8_A           76 ELLESGLVDAVDLTLPVELN--LPFIEKALRK--GVHVICEKPISTDVET  121 (340)
T ss_dssp             HHHHSSCCSEEEECCCGGGH--HHHHHHHHHT--TCEEEEESSSSSSHHH
T ss_pred             HHhcCCCCCEEEEeCCchHH--HHHHHHHHHC--CCcEEEeCCCCCCHHH
Confidence            3 3  368999999995443  3443333222  2235554444445544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.63  E-value=0.2  Score=55.83  Aligned_cols=161  Identities=14%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             eCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcC
Q 004918           20 LINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (724)
Q Consensus        20 l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (724)
                      =|+|..  -+++++-.+...++++.+++. .+-+|.|-=. ..|..|.+-++-          ...+...+++ ..+...
T Consensus       353 an~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~~----------Gi~~~ga~~l-~a~~~~  419 (548)
T 2bzr_A          353 ANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYGEA  419 (548)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHC
T ss_pred             EECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHHh----------hHHHHHHHHH-HHHhCC
Confidence            355543  589999999999999988653 5666666432 235555543221          1223344555 568889


Q ss_pred             CCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhhccc-ccH--------HHHHH-HH
Q 004918           98 KKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL--------SKAIE-MM  163 (724)
Q Consensus        98 ~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~-~G~--------~~a~~-l~  163 (724)
                      ..|+|+.|-|.|.|||.--..    .+|+++|.++++++.       ++.-|.+..+-+. +-.        ...++ +.
T Consensus       420 ~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~  492 (548)
T 2bzr_A          420 TVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQ  492 (548)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------CHHHHHHHH
T ss_pred             CCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccHHHHHHHHH
Confidence            999999999999988774442    389998888887763       3333333333221 110        11111 21


Q ss_pred             H--cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHH
Q 004918          164 L--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (724)
Q Consensus       164 l--tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (724)
                      -  .-..-++..+.+.|+||.|+++.+.........+.+
T Consensus       493 ~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l  531 (548)
T 2bzr_A          493 QEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLL  531 (548)
T ss_dssp             HHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHT
T ss_pred             HHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHH
Confidence            1  011235577899999999999987766655544443

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.56  E-value=0.022  Score=57.58  Aligned_cols=71  Identities=23%  Similarity=0.231  Sum_probs=52.3

Q ss_pred             ceEEEEcCCCC-cHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          309 RKVAVIGGGLM-GSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~G~m-G~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      +++.|||.|.| |..+|..|...  |..|++++++.+.+.                                     +.+
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~  201 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT  201 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence            68999999975 99999999999  889999976543222                                     346


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ++||+||.|++-..-++.       +.+++++++++..
T Consensus       202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVg  232 (281)
T 2c2x_A          202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDVG  232 (281)
T ss_dssp             TTCSEEEECSCCTTCBCG-------GGSCTTCEEEECC
T ss_pred             hhCCEEEECCCCCcccCH-------HHcCCCcEEEEcc
Confidence            789999999973322322       2357788887543

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=94.56  E-value=0.29  Score=54.18  Aligned_cols=165  Identities=15%  Similarity=0.204  Sum_probs=102.9

Q ss_pred             EEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004918           16 AIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (724)
Q Consensus        16 ~~i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (724)
                      .-|.=|+|..  -+++++-.+...++++.+++. ++-+|.|.=.+ .|-.|.+-++          ..+.+...+++ .+
T Consensus       334 Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E~----------~gi~~~~Ak~l-~a  400 (530)
T 3iav_A          334 VGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQEH----------DGIIRRGAKLI-FA  400 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH----------TTHHHHHHHHH-HH
T ss_pred             EEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC-CCCccHHHHH----------hhHHHHHHHHH-HH
Confidence            3344456654  589999999999999877754 56677764333 2666655321          12334455666 66


Q ss_pred             HhcCCCcEEEEECccccchhHHHHhh-----cCEEEEeCCceeeCcccccCccCCcchhhhh-ccccc------HHHHHH
Q 004918           94 IEDCKKPIVAAVEGLALGGGLELAMG-----CHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVG------LSKAIE  161 (724)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~~lala-----cD~ria~~~a~f~~pe~~~G~~P~~g~~~~l-~r~~G------~~~a~~  161 (724)
                      +.....|+|+.|-|.+.|||. ++++     +|+++|.++++++.       ++.-|.+..+ .+.+-      ...-.+
T Consensus       401 ~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~~~  472 (530)
T 3iav_A          401 YAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRAR  472 (530)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHHHH
T ss_pred             HHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHHHH
Confidence            889999999999999998665 5554     69999888887764       3222322222 21111      011111


Q ss_pred             HH--HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004918          162 MM--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       162 l~--ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      +.  +.-+.-++..|.+.|+||.|++|.+.........+.+.
T Consensus       473 ~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~  514 (530)
T 3iav_A          473 LIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  514 (530)
T ss_dssp             HHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHh
Confidence            11  11112367788899999999999988776555544443

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.51  E-value=0.023  Score=58.32  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|..|+.++..|+++|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999775

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.47  E-value=0.032  Score=55.36  Aligned_cols=42  Identities=12%  Similarity=0.123  Sum_probs=35.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      .++|.|.|+ |.+|.++|..|++.|++|++.+|+++.+++..+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            356777776 889999999999999999999999988776544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=94.45  E-value=0.068  Score=56.54  Aligned_cols=93  Identities=12%  Similarity=0.148  Sum_probs=57.0

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-
Q 004918          309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  384 (724)
                      -||+|||+|.||.. .+..+.+. +++|+ ++|++++++++             .            .......+++++ 
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~l   62 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D------------WPAIPVVSDPQML   62 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T------------CSSCCEESCHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h------------CCCCceECCHHHH
Confidence            58999999999997 67777665 67765 78999876431             0            012334556633 


Q ss_pred             c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCc-EEEecCCCCCHHHH
Q 004918          385 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV  431 (724)
Q Consensus       385 ~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~~  431 (724)
                      +  .+.|+|++|+|.....  ++.....   ..+. +++-..-+....+.
T Consensus        63 l~~~~vD~V~i~tp~~~H~--~~~~~al---~aGkhV~~EKPla~~~~e~  107 (352)
T 3kux_A           63 FNDPSIDLIVIPTPNDTHF--PLAQSAL---AAGKHVVVDKPFTVTLSQA  107 (352)
T ss_dssp             HHCSSCCEEEECSCTTTHH--HHHHHHH---HTTCEEEECSSCCSCHHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHH---HCCCcEEEECCCcCCHHHH
Confidence            3  3589999999966543  3333322   2333 55544435555443

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=94.37  E-value=0.12  Score=57.01  Aligned_cols=72  Identities=18%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             CcceEEEEcC----CCCcHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc
Q 004918          307 GVRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (724)
Q Consensus       307 ~~~kI~VIG~----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (724)
                      +.-||+|||+    |.||...+..+.+.  +++| .++|+++++++...+.          .|.          ......
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~----------~~~~~~   97 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGF   97 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEE
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------Ccceee
Confidence            3358999999    99999999999885  6775 4789999887654321          010          011234


Q ss_pred             cCccC-c--CCCCEEEEcccCC
Q 004918          380 LDYSE-F--KDVDMVIEAVIES  398 (724)
Q Consensus       380 ~~~~~-~--~~aDlVIeav~e~  398 (724)
                      +++++ +  .++|+|++|+|..
T Consensus        98 ~d~~ell~~~~vD~V~I~tp~~  119 (479)
T 2nvw_A           98 DSLESFAQYKDIDMIVVSVKVP  119 (479)
T ss_dssp             SCHHHHHHCTTCSEEEECSCHH
T ss_pred             CCHHHHhcCCCCCEEEEcCCcH
Confidence            55533 3  3799999999943

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.36  E-value=0.048  Score=56.07  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +++|.|.|+ |.+|+.++..|++.|++|++.+|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999997 9999999999999999999999986

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=94.35  E-value=0.8  Score=51.23  Aligned_cols=160  Identities=13%  Similarity=0.032  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      --++.+...+.+..+++.+... .+-+|.|.-.|+     +.+.+-.....  ....+.+.. ... ..+.....|+|++
T Consensus       119 gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgG-----Arl~~qe~~~~--~l~~~g~if-~~~-~~ls~~~iP~Isv  188 (588)
T 3gf3_A          119 AGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSG-----VEFPNQDKVYP--NRRGGGTPF-FRN-SELNQLGIPVIVG  188 (588)
T ss_dssp             GGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGHHHHSS--STTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cCccccccccc--chhhHHHHH-HHH-HHHhcCCCCEEEE
Confidence            3688888899999999888765 456777764443     33321111000  011112212 122 2355678999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeCCceeeCccccc--CccCCcchhhhhccc---ccHHHHHHHHHcCCCCCHHHHH--HC
Q 004918          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRL---VGLSKAIEMMLLSKSITSEEGW--KL  177 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~--G~~P~~g~~~~l~r~---~G~~~a~~l~ltg~~i~a~eA~--~~  177 (724)
                      |-|.|.|||...++++|++++.+++.+++.-..+  |+-|.+  .. .+.-   +.....-+-..+.+.+.+.+.+  ..
T Consensus       189 v~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~~-~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~s  265 (588)
T 3gf3_A          189 IYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--YI-DDEAAEQIIAAQIENSKLKVPAPGSVPIHYDET  265 (588)
T ss_dssp             ECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCTTBHHHHTTTS
T ss_pred             EeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--cc-cccchhhhhhhhccccccChhhccchhhhcccc
Confidence            9999999988778888888888888887643321  111100  00 1110   0011111111466777777777  59


Q ss_pred             CCcceecCcch-HHHHHHHHH
Q 004918          178 GLIDAVVTSEE-LLKVSRLWA  197 (724)
Q Consensus       178 Glv~~vv~~~~-l~~~a~~~a  197 (724)
                      |++|.++++|+ ..+.++++.
T Consensus       266 Gv~d~~a~de~~al~~~r~~l  286 (588)
T 3gf3_A          266 GFFREVYQNDLGVIDGIKKYI  286 (588)
T ss_dssp             CCSCEEESSHHHHHHHHHHHH
T ss_pred             ccceEEeCCHHHHHHHHHHHH
Confidence            99999997664 344444443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.35  E-value=0.2  Score=52.08  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      .++|.|.|+ |.+|+.++..|++.|++|++.+|+++..+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            468999988 9999999999999999999999998775543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=94.30  E-value=0.024  Score=55.48  Aligned_cols=78  Identities=22%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             ceEEEEcCCCCcHHHHHH--HHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          309 RKVAVIGGGLMGSGIATA--HILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~--la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      .+|+|||+|.+|..++..  +...|++++ ++|.+++......            .|           -.+...+++ +.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i------------~g-----------v~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV------------GG-----------VPVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE------------TT-----------EEEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh------------cC-----------CeeechhhHHHH
Confidence            479999999999999994  445578655 6799987533210            00           011223344 33


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEK  411 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~  411 (724)
                      +++.|+||.|+|  ....+++...+.+
T Consensus       143 i~~~D~ViIAvP--s~~~~ei~~~l~~  167 (215)
T 2vt3_A          143 VKDESVAILTVP--AVAAQSITDRLVA  167 (215)
T ss_dssp             CSSCCEEEECSC--HHHHHHHHHHHHH
T ss_pred             HHhCCEEEEecC--chhHHHHHHHHHH
Confidence            444499999999  4445566666654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.29  E-value=0.037  Score=55.72  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=37.8

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      .|+++|  |++-+|.++|..|++.|.+|++.|++++.+++..+.++
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~   54 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT   54 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            478888  55889999999999999999999999998887765554

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.28  E-value=0.062  Score=55.69  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            568999996 9999999999999999999999986

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.27  E-value=0.045  Score=48.41  Aligned_cols=81  Identities=9%  Similarity=-0.017  Sum_probs=58.0

Q ss_pred             cceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       308 ~~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      .++|+|||+    +..|..+...|.+.||+|+.++...+.+                             ....+..+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence            478999998    5679999999999999998888654321                             1233345556


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      ++.+.|+++.++|  .+...++++++.+.-. ..++.
T Consensus        55 dlp~vDlavi~~p--~~~v~~~v~e~~~~g~-k~v~~   88 (122)
T 3ff4_A           55 VIEGVDTVTLYIN--PQNQLSEYNYILSLKP-KRVIF   88 (122)
T ss_dssp             CCTTCCEEEECSC--HHHHGGGHHHHHHHCC-SEEEE
T ss_pred             HCCCCCEEEEEeC--HHHHHHHHHHHHhcCC-CEEEE
Confidence            6655999999999  7777788887666533 34443

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=94.27  E-value=0.16  Score=56.94  Aligned_cols=158  Identities=10%  Similarity=0.110  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -.++++-.....++++.+++ .++-+|.|.-. +.|..|.+-++          ....+...+++ ..+..+..|+|+.|
T Consensus       385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gA~~~-~a~a~a~vP~itvI  451 (587)
T 1pix_A          385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT  451 (587)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            47999999999999987765 46677777543 34655554221          12334455666 67899999999999


Q ss_pred             CccccchhHHHHhh-----c--CEEEEeCCceeeCcccccCccCCcchhhhhccc-ccH-----------HH-HHHHHH-
Q 004918          106 EGLALGGGLELAMG-----C--HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL-----------SK-AIEMML-  164 (724)
Q Consensus       106 ~G~a~GgG~~lala-----c--D~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~-~G~-----------~~-a~~l~l-  164 (724)
                      -|.+.||| .++++     +  |+++|.++++++.       +++-|.+..+-+. .-.           .. ..++.- 
T Consensus       452 ~g~~~Ggg-~~am~~~~~~~~~d~~~a~p~A~~~V-------m~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~  523 (587)
T 1pix_A          452 LRKGTAAA-HYVLGGPQGNDTNAFSIGTAATEIAV-------MNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  523 (587)
T ss_dssp             CSEEETTH-HHHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cCCCccHH-HHHhcCcccCcccceeeeccCCeEec-------CCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH
Confidence            99999887 45555     4  9988888887773       3333333322221 100           00 011110 


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccC
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  204 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (724)
                      --+..++..|.+.|+||.|+++.+.........+.+..++
T Consensus       524 y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          524 FYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence            0124789999999999999999888777666666665544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.18  E-value=0.039  Score=53.77  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=32.1

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       310 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      ||.|.| +|.+|..++..|++.|++|++.+|+++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            799998 59999999999999999999999998753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.15  E-value=0.036  Score=56.91  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            47999988 99999999999999999999999864

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.15  E-value=0.084  Score=52.04  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      +++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            356777776 78999999999999999999999999877765543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.03  E-value=0.047  Score=56.61  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ++|.|+|+ |.+|+.++..|++.|++|++.+|+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            58999996 99999999999999999999999875

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.02  E-value=0.083  Score=56.31  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=46.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      .||+|||+| +|.--+..+.+.  +++++ ++|+++++.++..++          -             .+...+|+ +.
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------~-------------gv~~~~~~~~l   63 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------F-------------GIPLYTSPEQI   63 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------T-------------TCCEESSGGGC
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------h-------------CCCEECCHHHH
Confidence            589999999 798777777654  56765 679999887664321          1             13345666 44


Q ss_pred             cCCCCEEEEcccCCh
Q 004918          385 FKDVDMVIEAVIESV  399 (724)
Q Consensus       385 ~~~aDlVIeav~e~~  399 (724)
                      +++.|+|+.++|...
T Consensus        64 ~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           64 TGMPDIACIVVRSTV   78 (372)
T ss_dssp             CSCCSEEEECCC--C
T ss_pred             hcCCCEEEEECCCcc
Confidence            678999999998653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.00  E-value=0.026  Score=55.87  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      .|+|||+|.-|.+.|..|+++|++|+++|+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999864

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=94.00  E-value=0.1  Score=56.57  Aligned_cols=99  Identities=17%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             cceEEEEcCCC---CcHHHHHHHHHCC-CcEE--EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC
Q 004918          308 VRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  381 (724)
Q Consensus       308 ~~kI~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  381 (724)
                      .-||+|||+|.   ||...+..+...+ ++|+  ++|++++++++..++.          | +         ......++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g-~---------~~~~~~~~   96 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL----------G-L---------DPSRVYSD   96 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH----------T-C---------CGGGBCSC
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc----------C-C---------CcccccCC
Confidence            35899999999   9999888887765 6765  6799999876643311          1 0         00123445


Q ss_pred             ccC-cC-------CCCEEEEcccCChHHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHH
Q 004918          382 YSE-FK-------DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIV  431 (724)
Q Consensus       382 ~~~-~~-------~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~  431 (724)
                      +++ ++       +.|+|++|+|.....  ++....   +..+ .+++-..-+....+.
T Consensus        97 ~~~ll~~~~~~~~~vD~V~I~tp~~~H~--~~~~~a---l~aGkhVl~EKPla~~~~ea  150 (417)
T 3v5n_A           97 FKEMAIREAKLKNGIEAVAIVTPNHVHY--AAAKEF---LKRGIHVICDKPLTSTLADA  150 (417)
T ss_dssp             HHHHHHHHHHCTTCCSEEEECSCTTSHH--HHHHHH---HTTTCEEEEESSSCSSHHHH
T ss_pred             HHHHHhcccccCCCCcEEEECCCcHHHH--HHHHHH---HhCCCeEEEECCCcCCHHHH
Confidence            532 33       489999999966543  333332   2233 355544445555443

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=93.98  E-value=0.11  Score=54.45  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLL  345 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~  345 (724)
                      .||+|+|+|.||..+++.+.++ +++|+ +.|++++...
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~   40 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA   40 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence            5899999999999999999874 55654 4577755443

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.98  E-value=0.13  Score=57.06  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.4

Q ss_pred             CCcceEEEEcCCCCcHH-HHHHHHHCCCcEEEEeCCHH
Q 004918          306 RGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~  342 (724)
                      ..++||.|||.|..|.+ +|..|.+.|++|+++|.++.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            45789999999999996 99999999999999998754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.98  E-value=0.13  Score=56.49  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=32.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .+||.|||.|..|.+.|..|.+.|++|+++|.++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            47999999999999999999999999999999653

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=93.92  E-value=0.16  Score=57.94  Aligned_cols=81  Identities=11%  Similarity=0.082  Sum_probs=55.3

Q ss_pred             CCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC--CHHHH
Q 004918           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEEG  174 (724)
Q Consensus        97 ~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i--~a~eA  174 (724)
                      ...|+|++|.|.|.|||..+...||++|+.+++.+.+.                    |+... +. .+|+.+  +.++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt--------------------GP~vI-k~-~tGeeV~~s~eeL  302 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAPAI-NK-MLGREVYTSNLQL  302 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS--------------------CHHHH-HH-HHTSCCCSCTHHH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe--------------------CHHHH-HH-HhCCccccCchhc
Confidence            46899999999999999999999999999988643321                    21111 11 256655  44432


Q ss_pred             ------HHCCCcceecCcchHHHHHHHHHHHHHc
Q 004918          175 ------WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       175 ------~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                            ...|++|.+++.|.   .+.+.++++.+
T Consensus       303 GGA~vh~~sGvad~va~dd~---eal~~ir~lLs  333 (758)
T 3k8x_A          303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWMS  333 (758)
T ss_dssp             HSHHHHTTTTSSSEEESSHH---HHHHHHHHHHT
T ss_pred             chhhHHHhcCCeeEEecCHH---HHHHHHHHHHh
Confidence                  36899999997653   44445555544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=93.91  E-value=0.043  Score=57.88  Aligned_cols=69  Identities=14%  Similarity=0.064  Sum_probs=44.1

Q ss_pred             ceEEEEcCCCCcHHHHHH-H-H-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGGGLMGSGIATA-H-I-LNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~-l-a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      .||+|||+|.||..+... + . ..+++|+ ++|+++++.+...           +            ...+...+++++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------~------------~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------I------------YSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------G------------GTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------h------------cCCCceECCHHH
Confidence            589999999999874333 3 3 2367776 8899987542110           0            112334566643


Q ss_pred             -cC--CCCEEEEcccCChH
Q 004918          385 -FK--DVDMVIEAVIESVP  400 (724)
Q Consensus       385 -~~--~aDlVIeav~e~~~  400 (724)
                       ++  ++|+|+.|+|....
T Consensus        60 ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEcCChHHH
Confidence             44  48999999995544

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.83  E-value=0.23  Score=50.45  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      .||++| | ++-+|.++|..|++.|.+|++.||+++.+++..+
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~   71 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA   71 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            378877 4 4779999999999999999999999998876543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=93.80  E-value=0.091  Score=52.78  Aligned_cols=42  Identities=21%  Similarity=0.143  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASR   50 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45667766 8999999999999999999999999877665443

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=93.73  E-value=0.2  Score=50.12  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             cceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          308 VRKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       308 ~~kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      |.|++|| | ++-+|.++|..|++.|.+|++.|++++.+++
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~   41 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD   41 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3455555 5 5789999999999999999999999887654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=93.70  E-value=0.057  Score=53.87  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   52 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAA   52 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56777766 89999999999999999999999988766543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.70  E-value=0.076  Score=54.53  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            578999997 9999999999999999999999984

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.67  E-value=0.11  Score=54.45  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       306 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |..++|.|.|+ |.+|+.++..|++.|++|++.+|++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            33468999998 9999999999999999999999976

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.63  E-value=0.021  Score=60.45  Aligned_cols=32  Identities=28%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      .||.|+|+|.+|.++|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998 89999998

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.61  E-value=0.083  Score=53.16  Aligned_cols=43  Identities=16%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL   51 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            45667766 89999999999999999999999998776654433

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.55  E-value=0.09  Score=53.65  Aligned_cols=42  Identities=29%  Similarity=0.286  Sum_probs=34.4

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      +|.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.+
T Consensus        35 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   77 (281)
T 4dry_A           35 IALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI   77 (281)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3445555 88999999999999999999999998877765443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.53  E-value=0.11  Score=51.89  Aligned_cols=44  Identities=25%  Similarity=0.198  Sum_probs=36.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.+.
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   57 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN   57 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45666666 889999999999999999999999998877655443

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=93.49  E-value=0.093  Score=53.28  Aligned_cols=41  Identities=17%  Similarity=0.097  Sum_probs=33.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~   63 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAG   63 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44555565 899999999999999999999999987766543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.49  E-value=0.078  Score=55.65  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .++|.|.|+ |.+|+.++..|++.|++|++++|++.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999996 99999999999999999999999654

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=93.48  E-value=0.14  Score=55.21  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC---------CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc
Q 004918          310 KVAVIGGGLMGSGIATAHILN---------NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~---------G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (724)
                      ||||||+|.||...+..+.+.         +.+| .++|++++++++..++.                      +.....
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~----------------------~~~~~y   85 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL----------------------GAEKAY   85 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH----------------------TCSEEE
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc----------------------CCCeEE
Confidence            799999999999888888764         3354 46899999877654321                      111234


Q ss_pred             cCccC-c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 004918          380 LDYSE-F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  431 (724)
Q Consensus       380 ~~~~~-~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~  431 (724)
                      +|+++ +  .+.|+|+.|+|.....  ++.....+.  ..-+++--.-+....+.
T Consensus        86 ~d~~~ll~~~~vD~V~I~tp~~~H~--~~~~~al~a--GkhVl~EKP~a~~~~ea  136 (412)
T 4gqa_A           86 GDWRELVNDPQVDVVDITSPNHLHY--TMAMAAIAA--GKHVYCEKPLAVNEQQA  136 (412)
T ss_dssp             SSHHHHHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESCSCSSHHHH
T ss_pred             CCHHHHhcCCCCCEEEECCCcHHHH--HHHHHHHHc--CCCeEeecCCcCCHHHH
Confidence            55533 3  4689999999955443  333332221  23355544445555443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=93.46  E-value=0.043  Score=58.60  Aligned_cols=95  Identities=16%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--------Cc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          310 KVAVIGGGLMGSGIATAHILNN--------IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G--------~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      ||||||+|.||..-+..+....        .+ |.++|++++++++..++.                      +.-...+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~----------------------g~~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKL----------------------GWSTTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHH----------------------TCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHc----------------------CCCcccC
Confidence            7899999999998877776532        24 457899999877653321                      1112345


Q ss_pred             CccC-c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          381 DYSE-F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       381 ~~~~-~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      |+++ +  .+.|+|+.|+|.....  ++.....+.  ..-+++--.-+..+.+
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H~--~~~~~al~a--GkhVl~EKPla~t~~e  114 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSHA--EIAIAALEA--GKHVLCEKPLANTVAE  114 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSSCSSHHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHH--HHHHHHHHc--CCCceeecCcccchhH
Confidence            6533 3  4689999999955543  333332221  2335554444445544

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=93.46  E-value=0.044  Score=54.00  Aligned_cols=39  Identities=18%  Similarity=0.077  Sum_probs=33.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++.++..
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL   45 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45666665 8999999999999999999999998876654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.42  E-value=0.098  Score=55.33  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            479999999999999999999998 799999763

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.41  E-value=0.034  Score=59.54  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3799999999999999999999999999998653

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=93.37  E-value=0.11  Score=51.81  Aligned_cols=40  Identities=23%  Similarity=0.151  Sum_probs=33.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      +|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   42 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD   42 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3555555 899999999999999999999999987765443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.36  E-value=0.075  Score=53.26  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   44 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS   44 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34666665 899999999999999999999999987766543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=93.31  E-value=0.13  Score=53.39  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--CCCc-EEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--NNIY-VVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~G~~-V~l~d~~~~~  343 (724)
                      -||+|||+|.||..++..+.+  .+.+ |.++|+++++
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            589999999999999999865  3555 4567999775

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.25  E-value=0.071  Score=53.76  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=34.2

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|.| .|.+|.++|..|++.|++|++.+|+++.++...+.
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   53 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVAD   53 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            3444555 48899999999999999999999999987765543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.24  E-value=0.11  Score=53.60  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999996 9999999999999999999999983

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.20  E-value=0.41  Score=48.01  Aligned_cols=43  Identities=30%  Similarity=0.444  Sum_probs=36.0

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      .|+++| | ++-+|.++|..|++.|..|+++|++++.+++..+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i   51 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL   51 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            367766 4 478999999999999999999999999888766544

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.17  E-value=0.12  Score=53.75  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=36.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            46777776 89999999999999999999999999887765544

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.14  E-value=0.077  Score=52.87  Aligned_cols=39  Identities=13%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus         6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45777776 8999999999999999999999998876653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.13  E-value=0.056  Score=54.92  Aligned_cols=42  Identities=10%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |+++| |+ |.+|..+|..|++.|++|++.+++++.+++..+.+
T Consensus        27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   70 (271)
T 4ibo_A           27 RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEF   70 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45555 54 88999999999999999999999999887765544

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.09  E-value=0.068  Score=53.75  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA   50 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45667765 899999999999999999999999988776543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.09  E-value=0.14  Score=53.72  Aligned_cols=86  Identities=15%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHh-hcCcccccCcc-C
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDYS-E  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~-~  384 (724)
                      -||+|+|+|.||..++..+.+. +.+| .+.|++++.+....+..     ...-.+.+. ...... ...+....+++ .
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~-----g~~~~~~~~-~~v~~~~~~~~~v~~d~~~l   76 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL-----GIPVYAASE-EFIPRFEKEGFEVAGTLNDL   76 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT-----TCCEEESSG-GGHHHHHHHTCCCSCBHHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhc-----Ccccccccc-ccceeccCCceEEcCcHHHh
Confidence            5899999999999999999875 4455 45688776655432210     000000000 000000 01123334443 3


Q ss_pred             cCCCCEEEEcccCChH
Q 004918          385 FKDVDMVIEAVIESVP  400 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~  400 (724)
                      +.++|+|++|.|....
T Consensus        77 ~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           77 LEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HTTCSEEEECCSTTHH
T ss_pred             ccCCCEEEECCCcccc
Confidence            4689999999996553

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=93.08  E-value=0.037  Score=61.35  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      |++|.|||+|.-|.+-|..|+++|++|++++.+..
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            68999999999999999999999999999998764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.07  E-value=0.11  Score=52.66  Aligned_cols=41  Identities=20%  Similarity=0.096  Sum_probs=35.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus        32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~   73 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA   73 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHH
Confidence            56778876 899999999999999999999999987665443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.03  E-value=0.13  Score=52.06  Aligned_cols=43  Identities=28%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   65 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   65 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666665 89999999999999999999999998776654433

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.01  E-value=0.19  Score=52.16  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=30.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcE-EEEeCCHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V-~l~d~~~~~  343 (724)
                      |.||+|||+ |.||...+..+...+.+| .++|++++.
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV   40 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            569999999 789999999999888764 567988775

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.97  E-value=0.1  Score=52.24  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   55 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVE   55 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56777766 899999999999999999999999887665443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.96  E-value=0.094  Score=53.18  Aligned_cols=42  Identities=17%  Similarity=0.085  Sum_probs=34.6

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |+++| | +|.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   72 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF   72 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            55555 5 488999999999999999999999998877665443

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=92.96  E-value=0.14  Score=54.25  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCccCc
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  385 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  385 (724)
                      .||+|+| .|.+|..++..|.++. ++|+.+.+++....+..   ........ ...+....     ..+... .+.+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~---~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~   79 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKY---KDACYWFQ-DRDIPENI-----KDMVVIPTDPKHE   79 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBH---HHHSCCCC-SSCCCHHH-----HTCBCEESCTTSG
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccH---HHhccccc-ccccccCc-----eeeEEEeCCHHHH
Confidence            6899999 7999999999998764 57776643322111100   00000000 00011100     111111 233444


Q ss_pred             -C-CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004918          386 -K-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (724)
Q Consensus       386 -~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (724)
                       + ++|+||+|+|  .....++...+.   ..++.|+++++...
T Consensus        80 ~~~~~DvV~~atp--~~~~~~~a~~~~---~aG~~VId~s~~~R  118 (354)
T 1ys4_A           80 EFEDVDIVFSALP--SDLAKKFEPEFA---KEGKLIFSNASAYR  118 (354)
T ss_dssp             GGTTCCEEEECCC--HHHHHHHHHHHH---HTTCEEEECCSTTT
T ss_pred             hcCCCCEEEECCC--chHHHHHHHHHH---HCCCEEEECCchhc
Confidence             6 8999999998  555555555543   35677888877653

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=92.94  E-value=0.13  Score=53.83  Aligned_cols=64  Identities=17%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC---------CcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN---------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G---------~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      -||+|||+|.||+.++..+.+..         .+| .++|+++++.+                + +.         ....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----------------~-~~---------~~~~   57 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----------------A-IP---------QELL   57 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----------------S-SC---------GGGE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----------------c-cC---------cccc
Confidence            48999999999999999988763         444 55688754311                1 11         1123


Q ss_pred             ccCccCcCCCCEEEEcccCC
Q 004918          379 VLDYSEFKDVDMVIEAVIES  398 (724)
Q Consensus       379 ~~~~~~~~~aDlVIeav~e~  398 (724)
                      ++|++++-+.|+|++|+|..
T Consensus        58 ~~d~~~ll~iDvVve~t~~~   77 (332)
T 2ejw_A           58 RAEPFDLLEADLVVEAMGGV   77 (332)
T ss_dssp             ESSCCCCTTCSEEEECCCCS
T ss_pred             cCCHHHHhCCCEEEECCCCc
Confidence            55664433999999999855

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.93  E-value=0.094  Score=53.26  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus        33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   74 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA   74 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHH
Confidence            45777766 899999999999999999999999987765443

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.93  E-value=0.13  Score=50.84  Aligned_cols=41  Identities=17%  Similarity=0.126  Sum_probs=34.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++.++...+
T Consensus         8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   49 (248)
T 2pnf_A            8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAE   49 (248)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            45666665 899999999999999999999999887765543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.92  E-value=0.088  Score=55.24  Aligned_cols=36  Identities=17%  Similarity=0.012  Sum_probs=33.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~  345 (724)
                      ++|.|+|.|..|..++..|.+.|+ |+++|++++.++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            579999999999999999999999 999999999876

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=92.91  E-value=0.19  Score=52.19  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCc-EEEEeCCHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIY-VVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~-V~l~d~~~~~  343 (724)
                      |.||+|||+ |.||...+..+.+.|.+ |.++|++++.
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            569999999 78999999999988876 4567888764

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.91  E-value=0.073  Score=53.59  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=33.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45777775 8999999999999999999999998876654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.91  E-value=0.064  Score=56.69  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      ..|.|||+|.+|.++|..|++.|++|+++|+..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            579999999999999999999999999999753

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.87  E-value=0.1  Score=52.06  Aligned_cols=41  Identities=17%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGD   49 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45667765 899999999999999999999999987766543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.87  E-value=0.11  Score=52.54  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   56 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA   56 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45666665 8999999999999999999999999877665443

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=92.83  E-value=0.082  Score=52.79  Aligned_cols=41  Identities=15%  Similarity=0.019  Sum_probs=33.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   51 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD   51 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34445555 889999999999999999999999988766543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=92.82  E-value=0.095  Score=52.43  Aligned_cols=43  Identities=23%  Similarity=0.174  Sum_probs=35.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      +++.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.+
T Consensus         8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34556665 89999999999999999999999999887765544

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.80  E-value=0.12  Score=57.77  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ++||.|.|+ |.+|+.++..|++.|++|++++|++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            468999995 999999999999999999999998764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.73  E-value=0.066  Score=54.00  Aligned_cols=37  Identities=11%  Similarity=0.094  Sum_probs=31.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~  345 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.+.
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   65 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV   65 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            44556665 88999999999999999999999987653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=92.63  E-value=0.12  Score=52.41  Aligned_cols=42  Identities=21%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   65 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE   65 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45666665 8999999999999999999999999877665443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.62  E-value=0.059  Score=54.87  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +++||.|.|+|.+|+.++..|++.|++|++.+|+++.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3568999999999999999999999999999998764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=92.61  E-value=0.26  Score=50.67  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +++|.|.|+ |.+|+.++..|++.|++|++.+|++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN   38 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence            368999995 999999999999999999999998543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=92.61  E-value=0.078  Score=53.74  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++..
T Consensus        10 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (270)
T 1yde_A           10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   49 (270)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45667765 8999999999999999999999998876553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.61  E-value=0.15  Score=51.43  Aligned_cols=44  Identities=16%  Similarity=0.146  Sum_probs=36.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      +++.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+.
T Consensus         9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   53 (265)
T 3lf2_A            9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALR   53 (265)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45566665 889999999999999999999999998877655443

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=92.60  E-value=0.14  Score=53.99  Aligned_cols=98  Identities=12%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             cceEEEEc-CCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          308 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG-~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      +.||+|+| .|.+|..+.+.|.++.. +++.+..+.+.-.+    +    ...  .+.+.     . ...+... +.+++
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~----~----~~~--~~~~~-----g-~~~~~~~-~~~~~   66 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP----V----HFV--HPNLR-----G-RTNLKFV-PPEKL   66 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB----G----GGT--CGGGT-----T-TCCCBCB-CGGGC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch----h----HHh--Cchhc-----C-ccccccc-chhHh
Confidence            46899999 59999999999987654 76665543221100    0    000  00000     0 0011111 12235


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (724)
                      .++|+||+|+|..  ...++...+   +..++.++++++...
T Consensus        67 ~~vDvV~~a~g~~--~s~~~a~~~---~~aG~~VId~Sa~~r  103 (345)
T 2ozp_A           67 EPADILVLALPHG--VFAREFDRY---SALAPVLVDLSADFR  103 (345)
T ss_dssp             CCCSEEEECCCTT--HHHHTHHHH---HTTCSEEEECSSTTS
T ss_pred             cCCCEEEEcCCcH--HHHHHHHHH---HHCCCEEEEcCcccc
Confidence            7899999999944  334444443   345777888877654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=92.59  E-value=0.094  Score=53.40  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=35.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   55 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQEL   55 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666665 89999999999999999999999999877765443

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=92.54  E-value=0.16  Score=53.19  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEEEE
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK  337 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~  337 (724)
                      .||+|+|+|.+|..+++.+.+. +.+|+.+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI   33 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAV   33 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence            4899999999999999998876 5566554

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.48  E-value=0.21  Score=51.08  Aligned_cols=43  Identities=19%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus        27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l   70 (302)
T 1w6u_A           27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   70 (302)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56777776 89999999999999999999999998877654433

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.48  E-value=0.16  Score=51.03  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=35.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus        10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (260)
T 2ae2_A           10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ   52 (260)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56777765 8999999999999999999999999877665443

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=92.48  E-value=0.1  Score=55.72  Aligned_cols=70  Identities=23%  Similarity=0.227  Sum_probs=43.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHH--------CCCc-EEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          310 KVAVIGGGLMGSGIATAHIL--------NNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~--------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      ||||||+|.||..-+..+..        .+.+ |.++|++++++++..++.                      +.-...+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------------------g~~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF----------------------GFEKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH----------------------TCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh----------------------CCCeecC
Confidence            79999999999876655432        1445 457899998877643321                      1112345


Q ss_pred             CccC-c--CCCCEEEEcccCChHH
Q 004918          381 DYSE-F--KDVDMVIEAVIESVPL  401 (724)
Q Consensus       381 ~~~~-~--~~aDlVIeav~e~~~~  401 (724)
                      |+++ +  .+.|+|+.|+|.....
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHH
Confidence            6643 3  4689999999955543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=92.48  E-value=0.2  Score=52.45  Aligned_cols=72  Identities=10%  Similarity=0.048  Sum_probs=47.1

Q ss_pred             CCcceEEEEcCCCCcH-HHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          306 RGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      |+.-||+|||+|.||. ..+..+.+. +.+| .++|++++.                              ..+...+++
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------------------~g~~~~~~~   72 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------------------EGVNSYTTI   72 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------------------TTSEEESSH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------------------cCCCccCCH
Confidence            3445899999999998 688888775 6665 467888542                              012234555


Q ss_pred             cC-c---CCCCEEEEcccCChHHHHHHHHHH
Q 004918          383 SE-F---KDVDMVIEAVIESVPLKQKIFSEL  409 (724)
Q Consensus       383 ~~-~---~~aDlVIeav~e~~~~k~~v~~~l  409 (724)
                      ++ +   .+.|+|++|+|  ...-.++....
T Consensus        73 ~~ll~~~~~vD~V~i~tp--~~~H~~~~~~a  101 (330)
T 4ew6_A           73 EAMLDAEPSIDAVSLCMP--PQYRYEAAYKA  101 (330)
T ss_dssp             HHHHHHCTTCCEEEECSC--HHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCC--cHHHHHHHHHH
Confidence            33 2   46899999999  44434444443

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.47  E-value=0.13  Score=51.03  Aligned_cols=41  Identities=20%  Similarity=0.043  Sum_probs=34.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   47 (247)
T 3lyl_A            6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN   47 (247)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45566665 889999999999999999999999988776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	724
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	2e-40
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-36
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	2e-33
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	8e-30
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	4e-21
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	7e-21
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	4e-20
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-17
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-15
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	2e-14
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	6e-13
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-12
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	7e-12
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	8e-12
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	0.001
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	4e-10
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	2e-09
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	2e-08
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	7e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	2e-06
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	6e-06
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	2e-05

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  147 bits (371), Expect = 2e-40
 Identities = 69/173 (39%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q        S           + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNRTFQDCYSGK----FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
            G PE+ LG IPG GGTQRL R VG S A+EM+L    I++++  + GL+  +
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  137 bits (345), Expect = 2e-36
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 6/301 (1%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +T+     G+  +        VN      +  L+   +   +   VK ++++     F  
Sbjct: 8   ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ +    
Sbjct: 68  GADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADF 127

Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
           R+ A   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+  +DA
Sbjct: 128 RVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187

Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA---KKTAP 239
           VVT+++L   +        +    +        +   L+   +++     +     +  P
Sbjct: 188 VVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGP 247

Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
           N P     +  I++    G    +  EA  F +L     S  L+ +F   +   K   V 
Sbjct: 248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307

Query: 300 D 300
           D
Sbjct: 308 D 308

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  124 bits (312), Expect = 2e-33
 Identities = 60/184 (32%), Positives = 109/184 (59%)

Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
           + V++ AV+G G+MG GIA         +++K++N   + +G+      + G V +G++T
Sbjct: 2   KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61

Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
             K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTST
Sbjct: 62  PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121

Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
           I ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +   K + K P+V
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181

Query: 486 VGNC 489
           V +C
Sbjct: 182 VNDC 185

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 8e-30
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--- 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 365 --TQDKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
               +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183

Query: 482 VPVVVGNC 489
            PV   + 
Sbjct: 184 HPVSCKDT 191

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.0 bits (213), Expect = 4e-21
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN 677
           VT+++I+  ++ P+  E+ R LE+GIV  A++ D   V G+ FP +RGG + + D++G  
Sbjct: 2   VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVA 61

Query: 678 YVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
                  ++++  G  + P+  L E A  G
Sbjct: 62  EFVALADQYAE-LGALYHPTAKLREMAKNG 90

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.4 bits (213), Expect = 7e-21
 Identities = 50/124 (40%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEF 550
           GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G           
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 551 DKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYEKGSKPKP----DPSVL----PII 600
            + FPDR        +D L ++ R G+ NGKG Y YE   K K     D SVL    PI+
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIV 120

Query: 601 EECR 604
            E R
Sbjct: 121 YEQR 124

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 88.2 bits (217), Expect = 4e-20
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 5/229 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
            D+   ++V   G           + + + +    KP VAAV G A+ GG  LA+ C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
           +   + +LG  E           +  L R VG   A +++L  + + + E   LGL++ +
Sbjct: 120 VMDEEARLGYTE-VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

Query: 184 VTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232
               + L+ ++  A ++A      +R               +  +LA L
Sbjct: 179 APPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAAL 227

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.0 bits (193), Expect = 8e-17
 Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 15/242 (6%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+   
Sbjct: 11  QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70

Query: 71  ---------QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
                      V              +    +IE C KP++AA+ G  +GGG++L   C 
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE-MMLLSKSITSEEGWKLGLI 180
            R         + E+ +G+    G  QRLP+++G    +  +   ++ + ++E    GL+
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190

Query: 181 DAVVTSEELLKVSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQAKK 236
             V   ++++  +        + + P      +      +  S+ E+ + +    +   +
Sbjct: 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ 250

Query: 237 TA 238
           T 
Sbjct: 251 TQ 252

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 8   MEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
           +E  N G+ ++ +      N+L+  ++  L    +   S   V+ I++            
Sbjct: 9   LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
               +    + +V       +  V+N I +   P +AA++GLALGGGLELA+ C  R+AA
Sbjct: 69  DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127

Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
              ++GL E  L +IPG GGTQRLPR +G+S A E++  ++ +  +E   +GLI  V+  
Sbjct: 128 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKL 217
            +    +   ALD+A    P      R  KL
Sbjct: 188 NQEGDAAYRKALDLAREFLPQGPVAMRVAKL 218

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 18/183 (9%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +D    +    P V NA     V  L    + A    DV  ++LTGNG     G      
Sbjct: 27  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 86

Query: 71  QKVHGAGDVSLMPDVSVEL----------------VVNLIEDCKKPIVAAVEGLALGGGL 114
                    S     S +                 V  LI    K ++  V G A GGG 
Sbjct: 87  GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 146

Query: 115 ELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
            L + C   +A+    +    +  +G   G  G+  L R VG   A E+  L ++ T+E+
Sbjct: 147 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 206

Query: 174 GWK 176
             +
Sbjct: 207 MHQ 209

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 67.5 bits (163), Expect = 6e-13
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 5/230 (2%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +   V  DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  G
Sbjct: 5   IGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           F +       G   V     ++      +++ I   K+P++AA+ G+A GGGL +++   
Sbjct: 64  FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123

Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
             I A   +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+ 
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183

Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
            V   +E  +V+   A ++AA               G +    E  +   
Sbjct: 184 RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEI 233

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 4/195 (2%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F
Sbjct: 10  EDGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNF 68

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
             +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ +
Sbjct: 69  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
                P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V     
Sbjct: 129 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188

Query: 189 LLKVSRLWALDIAAR 203
             K         A  
Sbjct: 189 FQKEVWTRLKAFAKL 203

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 7e-12
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 22/243 (9%)

Query: 5   RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +++  +      II LINP   NAL       L +  E A    DV   ++  +G  FS 
Sbjct: 6   KISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGL 114
           G D     K  G        + S  +         V +      K ++  + G A+G   
Sbjct: 65  GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS-KSITSEE 173
            L   C    +       L       +   GGT     L   +      L+  K    + 
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184

Query: 174 GWKLGLIDAVVTSEELL--KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
             + G I              +     ++  +    ++ L+      S    +++LK   
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK----VKGLYLP----SCLGMKKLLKSNH 236

Query: 232 LQA 234
           + A
Sbjct: 237 IDA 239

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFG--LPIGPFQLLDLAGYGVAAATSK 548
           GF VNR   PY   A  L   G             G   P+GPF+LLD  G         
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 549 EFDKAFPD--RSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
            + +   +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 99

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
           IV  +L P + E+ R+ E G      D+D A  LG  +P    G     D VG +     
Sbjct: 3   IVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFI 58

Query: 683 LKKWSQLYGN--FFKPSRFLEERATKG 707
           +  W ++       +PS  L +   + 
Sbjct: 59  VDGWHEMDAENPLHQPSPSLNKLVAEN 85

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 4/235 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
                   ++ +   G  D     D   ++    I+   KPI++ VEG   GG  E+ M 
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM-IQKFPKPIISMVEGSVWGGAFEMIMS 117

Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
               IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177

Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234
           ++ VV  EEL   +   A  I+ +    I  +    ++   +      +  R+Q 
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQG 232

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 31/226 (13%)

Query: 286 FFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHIL--------NNIYVVLK 337
           F      +K     +I L           G  L+        ++            VV+ 
Sbjct: 22  FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77

Query: 338 EVNSEYLLKGIKT-----IEANVRGLV-TRGKLTQDKANNALKMLKG-------VLDYSE 384
           E + + +++   +     I   +R +V  + K         + ++           D  E
Sbjct: 78  EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDRE 137

Query: 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-R 440
             +  D+VI  + +    +  I  +   A P   I+    +        + +    +D  
Sbjct: 138 AVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196

Query: 441 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
           I   H      +   + I     +   V   L  +GKI +     +
Sbjct: 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNK-LYEIGKIARGKAFKM 241

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 32/118 (27%), Positives = 56/118 (47%)

Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +       GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS 
Sbjct: 9   PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+   
Sbjct: 69  GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAAD 126

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 5  RVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
          RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +    
Sbjct: 3  RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD--IN 68
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D    
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 68

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           V    +     SL    +++  VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 69  VRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 128

Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
                P  T G  P    +   P+++G + A EM+
Sbjct: 129 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML 163

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 1   MAAP---------RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVK 50
           +A P          + +E  + GV ++T+                L   F +     + K
Sbjct: 1   LATPFQEYSQKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
             V+   G   S   +I+      G            + ++N +   + P++AAV G   
Sbjct: 60  --VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT 117

Query: 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
                  M      A   T    P    G++PG G     P ++G ++    +L  + + 
Sbjct: 118 NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 177

Query: 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
           +      G ++ V++ +ELL  +   A  IA +
Sbjct: 178 ARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVK 50
          +  E  +D V +ITL +P   N  +  +   +KD    A + D V+
Sbjct: 1  MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVR 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	724
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.93
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.92
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.91
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.82
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.74
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.72
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.7
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.68
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.57
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.56
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.53
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.48
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.48
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.23
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.22
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.17
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.14
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.12
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.08
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.06
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.03
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.96
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.81
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.77
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.76
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.75
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.73
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.65
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.62
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.62
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.61
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.59
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.57
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.5
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.49
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.43
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.42
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.25
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.19
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.18
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.11
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.1
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.02
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.92
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.89
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.8
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.79
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.72
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.65
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.64
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.63
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.61
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.55
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.53
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.43
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.42
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.4
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.38
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.38
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.36
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.35
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.31
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.29
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.25
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.24
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.2
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.2
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.03
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.94
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.91
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.8
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.75
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.73
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.69
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.69
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.66
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.61
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.46
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.42
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.36
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.33
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.32
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.31
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.28
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.25
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.17
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.16
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.15
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.12
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.1
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.08
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.05
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.99
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	95.91
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.89
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.86
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.74
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.73
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.61
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.61
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.6
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.59
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.55
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.48
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.46
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.46
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.45
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.4
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.36
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.35
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.32
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.31
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.26
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.21
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.2
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.14
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.13
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.07
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.05
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.95
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.92
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.82
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	94.79
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.77
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.69
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.64
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.63
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.61
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.6
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.59
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.58
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.49
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.44
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.42
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.38
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.33
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.29
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.29
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.27
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.26
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.22
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.2
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.16
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.16
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.16
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.04
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	94.03
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.03
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.02
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.98
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.94
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.92
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.86
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.83
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.74
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	93.65
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.63
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.58
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.55
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.53
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.44
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.4
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.22
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.22
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.18
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.13
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.01
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.98
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.98
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.84
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.79
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.65
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.63
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.54
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.52
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.42
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.42
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.32
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.25
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.2
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.17
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.15
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.14
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.97
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.95
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.84
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.81
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.74
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.68
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.64
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	91.6
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.55
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.47
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.44
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.12
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.94
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	90.85
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	90.8
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.75
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.67
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.61
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.52
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.32
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.3
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.15
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.9
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	89.85
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.7
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.68
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.66
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	89.65
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.64
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.57
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.48
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.47
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.45
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.4
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.37
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.26
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	89.07
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.03
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.0
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.63
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.62
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.52
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.5
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.44
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.99
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.78
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.58
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.55
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	87.49
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	87.26
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.9
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	86.84
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	86.43
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.41
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	86.4
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	86.38
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	86.22
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	86.22
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.91
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	85.48
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.38
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	85.36
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.17
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.15
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.01
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	84.73
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	84.65
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.64
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	84.38
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	83.9
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.69
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.46
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.45
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	83.34
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	83.33
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	83.3
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	82.81
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.79
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	82.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	82.65
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.65
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	82.51
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	82.39
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.06
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	81.7
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	81.61
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.57
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.56
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	81.42
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.21
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	80.95
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	80.82
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	80.58
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.16
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	80.01

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.2e-52  Score=441.56  Aligned_cols=297  Identities=26%  Similarity=0.372  Sum_probs=253.0

Q ss_pred             CCC--CcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCC
Q 004918            1 MAA--PRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (724)
Q Consensus         1 M~~--~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   76 (724)
                      |.|  +.++++..++||++|+|| +|+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus         1 M~~~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   80 (310)
T d1wdka4           1 MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL   80 (310)
T ss_dssp             CCEECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS
T ss_pred             CCcCCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc
Confidence            664  588898767899999998 674 7999999999999999999999999999999999999999999998764433


Q ss_pred             Cccc--ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccc
Q 004918           77 GDVS--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV  154 (724)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~  154 (724)
                      .+..  ......++++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~i  159 (310)
T d1wdka4          81 PDAELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLI  159 (310)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHH-HHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhh
Confidence            3211  1122344556 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC--CcHHHHHHHHHHHH
Q 004918          155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARL  232 (724)
Q Consensus       155 G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  232 (724)
                      |..++++|+++|++++|+||+++||||+|||++++.+.+.++++++++.+..+...........  +.......+.....
T Consensus       160 G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (310)
T d1wdka4         160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKG  239 (310)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999988765433222211111  22122223333333


Q ss_pred             -HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCC
Q 004918          233 -QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV  298 (724)
Q Consensus       233 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~~~  298 (724)
                       ..++++++|||+.+++++++++...+++++|+.|++.|.+++.|++++++|++|++||..+|.+++
T Consensus       240 ~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~  306 (310)
T d1wdka4         240 FVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKV  306 (310)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Confidence             356889999999999999999999999999999999999999999999999999999999986644

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-49  Score=410.32  Aligned_cols=254  Identities=33%  Similarity=0.428  Sum_probs=227.9

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc
Q 004918            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (724)
Q Consensus         2 ~~~~v~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (724)
                      +|++|.++..  +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-   80 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD-   80 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh-
Confidence            4789999984  3589999999996 79999999999999999999999999999999999999999999986532111 


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                        ........++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+
T Consensus        81 --~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --hhHHHHHHHH-HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence              1111122334 5688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|+++|++++|+||+++|||++|++++++.+.+.+++.+++..++.+++                             
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~-----------------------------  208 (260)
T d1mj3a_         158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA-----------------------------  208 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred             HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875433                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                             .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+..
T Consensus       209 -------~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~  258 (260)
T d1mj3a_         209 -------MAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK  258 (260)
T ss_dssp             -------HHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                   46778889999999999999999999999999999999999999998753

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-49  Score=405.95  Aligned_cols=252  Identities=20%  Similarity=0.296  Sum_probs=225.5

Q ss_pred             CCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc--
Q 004918            3 APRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~--   78 (724)
                      |++|.+++ +++|++|++| ||+ .|++|.+|+++|.++++.+++| ++++|||||.|++||+|+|++++........  
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   78 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT   78 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence            67899999 8999999997 674 7999999999999999999987 5799999999999999999999865322211  


Q ss_pred             -ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       ...+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus        79 ~~~~~~~~~~~~~-~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~  157 (258)
T d2fw2a1          79 ASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA  157 (258)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred             hhhHHHHHHHHHH-HhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence             122334455666 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      ++++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++                            
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~----------------------------  209 (258)
T d2fw2a1         158 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLE----------------------------  209 (258)
T ss_dssp             HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             ccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                              .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       210 --------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         210 --------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence                    346677777777899999999999999999999999999999999876

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=5.2e-49  Score=406.68  Aligned_cols=256  Identities=23%  Similarity=0.316  Sum_probs=230.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---
Q 004918            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---   78 (724)
                      |++|.+++ ++||++|||||| +.|++|.+|+.+|.++++.+++|+++++|||||.|++||+|+|++++........   
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            68899999 799999999999 5799999999999999999999999999999999999999999998854221111   


Q ss_pred             -ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       ........+.++ .+|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++|++|+++++++++|..
T Consensus        81 ~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~  159 (269)
T d1nzya_          81 HFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR  159 (269)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence             111122233455 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      +|+++++||+.++|+||+++||||+|+|++++.+++.++|+++++.|+.+++                            
T Consensus       160 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------  211 (269)
T d1nzya_         160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV----------------------------  211 (269)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred             hhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875433                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                              .+|+.++.+...+++++++.|.+.+..++.+++++|++++|++||+|++.+
T Consensus       212 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~  262 (269)
T d1nzya_         212 --------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCC
Confidence                    457788888889999999999999999999999999999999999998755

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-48  Score=400.19  Aligned_cols=254  Identities=21%  Similarity=0.285  Sum_probs=220.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCccCCCCchhhhhccCCC
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~--g~~F~aG~Dl~~~~~~~~~~   77 (724)
                      |+|++|.+++ +++|++||||||+ .|+||.+|+++|.+++++++ ++++++|||+|.  |++||+|+|++++...... 
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~-   77 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD-   77 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence            9999999999 8999999999995 79999999999999999997 457999999986  5789999999998753322 


Q ss_pred             cccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHH
Q 004918           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS  157 (724)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~  157 (724)
                       ...+......++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..
T Consensus        78 -~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~  155 (261)
T d1ef8a_          78 -PLSYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -TTCTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -ccccccchhhhH-HHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence             223344555666 779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004918          158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  237 (724)
Q Consensus       158 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (724)
                      ++++++++|+.++|+||+++||||+|+|++++.+.+.+++++++..++.+++                            
T Consensus       156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~----------------------------  207 (261)
T d1ef8a_         156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA----------------------------  207 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred             ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999998875443                            


Q ss_pred             CCCChhHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          238 APNMPQHQACLDVIEEGIVHG--GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~--~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                              .+|+.++......  ....++.+...+..++.|+|++|++++|++||+|+.+
T Consensus       208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~  259 (261)
T d1ef8a_         208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV  259 (261)
T ss_dssp             --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence                    3455666554443  3455666677888999999999999999999998854

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.6e-49  Score=402.96  Aligned_cols=253  Identities=23%  Similarity=0.249  Sum_probs=224.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCC-ccc
Q 004918            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVS   80 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~   80 (724)
                      |+++.++.+++||++||| || +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus         8 ~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   86 (263)
T d1wz8a1           8 YPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALL   86 (263)
T ss_dssp             CTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHH
T ss_pred             CCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccc
Confidence            788999987789999999 66 589999999999999999999999999999999999999999999986542221 122


Q ss_pred             ccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHH
Q 004918           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI  160 (724)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~  160 (724)
                      .+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|..+|+
T Consensus        87 ~~~~~~~~~~-~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~  165 (263)
T d1wz8a1          87 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  165 (263)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             cchhhhhHHH-HHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3334455666 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  240 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (724)
                      +|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++                               
T Consensus       166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~-------------------------------  214 (263)
T d1wz8a1         166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH-------------------------------  214 (263)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred             hhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999876543                               


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004918          241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  294 (724)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~  294 (724)
                           .+|++++....... +.++.|.+.+..++.|+|++|++++|++||+|+.
T Consensus       215 -----~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         215 -----HTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             -----HHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence                 34556666555444 5689999999999999999999999999998874

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-47  Score=397.06  Aligned_cols=257  Identities=19%  Similarity=0.311  Sum_probs=225.1

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCccc
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (724)
                      +|+++.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++|+|||||.|++||+|+|+.++..........
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            58899886657899999999995 79999999999999999999999999999999999999999999887543322111


Q ss_pred             c----------cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhh
Q 004918           81 L----------MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (724)
Q Consensus        81 ~----------~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l  150 (724)
                      .          .......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             cccchhhhhccchhhhHHHH-HHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence            1          111223445 56899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccHHH-HHHHHHcCCCCCHHHHHHCCCcceecCcch-HHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHH
Q 004918          151 PRLVGLSK-AIEMMLLSKSITSEEGWKLGLIDAVVTSEE-LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  228 (724)
Q Consensus       151 ~r~~G~~~-a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~-l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (724)
                      ++++|... +.+++++|++++|+||+++||||+|+|+++ +.+++.+++.++++.+|.+++                   
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~-------------------  220 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ-------------------  220 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred             ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHH-------------------
Confidence            99999554 568999999999999999999999998655 678889999999998875443                   


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                                       .+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~  270 (275)
T d1dcia_         221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSI  270 (275)
T ss_dssp             -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGC
T ss_pred             -----------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                             45677778888899999999999999999999999999999999998874

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-47  Score=391.42  Aligned_cols=247  Identities=24%  Similarity=0.336  Sum_probs=219.8

Q ss_pred             EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc--ccccchh
Q 004918            9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--VSLMPDV   85 (724)
Q Consensus         9 ~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~   85 (724)
                      ++++++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++........  .......
T Consensus         3 ~ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~   82 (253)
T d1uiya_           3 QVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLS   82 (253)
T ss_dssp             EEECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             EEeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhh
Confidence            4435679999999996 699999999999999999999999999999999999999999998876433321  1122223


Q ss_pred             HHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHc
Q 004918           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL  165 (724)
Q Consensus        86 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~lt  165 (724)
                      ...++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++|. |++++|++++|..+|++|+++
T Consensus        83 ~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~l~  160 (253)
T d1uiya_          83 LMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLT  160 (253)
T ss_dssp             HHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhhh-hHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHhhc
Confidence            33445 6689999999999999999999999999999999999999999999998875 668899999999999999999


Q ss_pred             CCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004918          166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  245 (724)
Q Consensus       166 g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  245 (724)
                      |++++|+||+++||||+|+|++++.+.+.+++.++++.++.+.+                                    
T Consensus       161 g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~------------------------------------  204 (253)
T d1uiya_         161 GRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR------------------------------------  204 (253)
T ss_dssp             CCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------------
T ss_pred             CcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHH------------------------------------
Confidence            99999999999999999999999999999999999998875432                                    


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004918          246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  293 (724)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~  293 (724)
                      .+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       205 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         205 LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            467788888899999999999999999999999999999999999876

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-47  Score=393.23  Aligned_cols=248  Identities=26%  Similarity=0.403  Sum_probs=216.0

Q ss_pred             EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccCCCCchhhhhccCCCcccccchhHH
Q 004918           10 VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (724)
Q Consensus        10 ~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (724)
                      .+++||++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|+ +||+|.|++++...... +.........
T Consensus        11 ~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~-~~~~~~~~~~   89 (266)
T d1hzda_          11 EENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS-EVGPFVSKIR   89 (266)
T ss_dssp             GGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHH-HHHHHHHHHH
T ss_pred             EecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccch-hhhhhhhHHH
Confidence            335789999999996 69999999999999999999999999999999884 79999999988654321 1223334455


Q ss_pred             HHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCC
Q 004918           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK  167 (724)
Q Consensus        88 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~  167 (724)
                      +++ +.|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++|+++|+
T Consensus        90 ~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          90 AVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHH-HHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            566 6799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHCCCcceecCcchHHHHHHH----HHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004918          168 SITSEEGWKLGLIDAVVTSEELLKVSRL----WALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  243 (724)
Q Consensus       168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~----~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  243 (724)
                      +++|+||+++||||+|||++++.+++.+    ++++++..||.++                                   
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~-----------------------------------  213 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAM-----------------------------------  213 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHH-----------------------------------
T ss_pred             ccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHH-----------------------------------
Confidence            9999999999999999998776555444    4455555555433                                   


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004918          244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  295 (724)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~  295 (724)
                       ..+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|+++
T Consensus       214 -~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  264 (266)
T d1hzda_         214 -RVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  264 (266)
T ss_dssp             -HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence             256778888888999999999999999999999999999999999998763

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-46  Score=378.22  Aligned_cols=240  Identities=23%  Similarity=0.285  Sum_probs=211.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCc---
Q 004918            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (724)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~---   78 (724)
                      |++|.+++ +++|++|||||| +.|++|.+|+.+|.++++.++.|+.+ +||++|.|++||+|+|++++........   
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK   79 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence            68899999 789999999999 58999999999999999999999876 8999999999999999999876433221   


Q ss_pred             ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHH
Q 004918           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      .........+++ ++|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~  158 (245)
T d2f6qa1          80 AKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK  158 (245)
T ss_dssp             HHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred             cchhhhHHHHHH-hhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccch
Confidence            111222234555 6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  238 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (724)
                      |++|+++|++++|+||+++||||+|+|++++++++.++|+++++.|+.+++                             
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-----------------------------  209 (245)
T d2f6qa1         159 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR-----------------------------  209 (245)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred             hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999998875443                             


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHH
Q 004918          239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG  281 (724)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~  281 (724)
                             .+|+.++.....++++.++.|...+..++.|+|+++
T Consensus       210 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         210 -------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             -------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             -------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence                   456788888778899999999999999999999975

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.5e-45  Score=383.34  Aligned_cols=257  Identities=24%  Similarity=0.277  Sum_probs=208.2

Q ss_pred             CCCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCccCCCCchhhhh
Q 004918            2 AAPRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQK   72 (724)
Q Consensus         2 ~~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-------~~F~aG~Dl~~~~~   72 (724)
                      +...|.++.+ ++||++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.+       +.||+|.|++....
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            3456888764 6899999999996 6999999999999999999999999999999974       45777788876543


Q ss_pred             ccCCC------c----ccccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCcc
Q 004918           73 VHGAG------D----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVI  141 (724)
Q Consensus        73 ~~~~~------~----~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~  141 (724)
                      .....      +    ..........++ +.|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~  174 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF  174 (297)
T ss_dssp             ----------------------CHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHH-HHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence            21110      0    111112233455 6789999999999999999999999999999999865 5799999999999


Q ss_pred             CCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcH
Q 004918          142 PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLS  221 (724)
Q Consensus       142 P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~  221 (724)
                      |+++++++|+|++|..+|+++++||++++|+||+++||||+|+|++++++.+.++++++++.|+.+++            
T Consensus       175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~------------  242 (297)
T d1q52a_         175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR------------  242 (297)
T ss_dssp             CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------
T ss_pred             cccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHH------------
Confidence            99999999999999999999999999999999999999999999999999999999999998875443            


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004918          222 EAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  296 (724)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~af~~~r~~~~~~  296 (724)
                                              .+|+.++.. ...+.+....|.+.+..++.|+|++|++++|++||+|+..+
T Consensus       243 ------------------------~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~  292 (297)
T d1q52a_         243 ------------------------MLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  292 (297)
T ss_dssp             ------------------------HHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             ------------------------HHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence                                    234444443 23455556678888999999999999999999999998754

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=9.1e-45  Score=369.90  Aligned_cols=243  Identities=21%  Similarity=0.290  Sum_probs=213.9

Q ss_pred             CcEEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccCCCCchhhhhccCCCcccc
Q 004918            4 PRVTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSL   81 (724)
Q Consensus         4 ~~v~~~~~-~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~   81 (724)
                      +.|.++.+ ++||++||||||+.|+||.+|+++|.++++.+++|+++++|||+|.|+ +||+|+|++++.... ......
T Consensus         2 ~~ilve~~~~~gIa~itln~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~-~~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccc-cccccc
Confidence            45677774 578999999999999999999999999999999999999999999886 699999999986432 122333


Q ss_pred             cchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCcee--eCcccccCccCCcchhhhhcccccHHHH
Q 004918           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL--GLPELTLGVIPGFGGTQRLPRLVGLSKA  159 (724)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f--~~pe~~~G~~P~~g~~~~l~r~~G~~~a  159 (724)
                      +....++++ .+|.++||||||+|||+|+|||++|+++|||||++++++|  ++||+++|++|++|++++|++++|..++
T Consensus        81 ~~~~~~~~~-~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  159 (249)
T d1sg4a1          81 YWKAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  159 (249)
T ss_dssp             HHHHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             cchhhHHHH-HhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            444455666 6799999999999999999999999999999999999876  7899999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  239 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (724)
                      ++|+++|++++|++|+++||||+|+|++++.+++.++++++++.|+.+++                              
T Consensus       160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------  209 (249)
T d1sg4a1         160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ------------------------------  209 (249)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred             cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998875543                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004918          240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVH  284 (724)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~  284 (724)
                            ..|+.++......+.+.++.|.+.|...+.+++.+++++
T Consensus       210 ------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         210 ------LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             ------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence                  345666676667788889999999999999999988764

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=6.8e-44  Score=359.00  Aligned_cols=201  Identities=27%  Similarity=0.383  Sum_probs=180.0

Q ss_pred             EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccCCCCchhhhhccCCCcccccch
Q 004918            7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPD   84 (724)
Q Consensus         7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (724)
                      .++.++|+|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.......+...+..
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence            35555889999999999 57999999999999999999999999999999876 78999999999976543333334445


Q ss_pred             hHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHH
Q 004918           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML  164 (724)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~l  164 (724)
                      ...+++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+ .+|++++|..+++++++
T Consensus        82 ~~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l  159 (230)
T d2a7ka1          82 RVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIY  159 (230)
T ss_dssp             HHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHH
T ss_pred             hhhhhh-hcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccccc
Confidence            555666 7799999999999999999999999999999999999999999999999998775 57999999999999999


Q ss_pred             cCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004918          165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (724)
Q Consensus       165 tg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (724)
                      +|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus       160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~  204 (230)
T d2a7ka1         160 QCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI  204 (230)
T ss_dssp             HCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999876543

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-42  Score=355.23  Aligned_cols=186  Identities=24%  Similarity=0.280  Sum_probs=162.8

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc-
Q 004918            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV-   79 (724)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~-   79 (724)
                      .++.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+||+++......... 
T Consensus         3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~   81 (266)
T d1pjha_           3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK   81 (266)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhcccccccc
Confidence            357899999 8999999999996 7999999999999999999999999999999999999999999998764322111 


Q ss_pred             ---------cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEe-CCceeeCcccccCccCCcchhhh
Q 004918           80 ---------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQR  149 (724)
Q Consensus        80 ---------~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~P~~g~~~~  149 (724)
                               ..+......++ ..+.++||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|++|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~  160 (266)
T d1pjha_          82 YPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS  160 (266)
T ss_dssp             CSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHH-HHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence                     11222333445 67899999999999999999999999999999997 56789999999999999999999


Q ss_pred             hcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecCcchH
Q 004918          150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL  189 (724)
Q Consensus       150 l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l  189 (724)
                      |+|++|..+|++|++||++++|+||+++||||+|+++++.
T Consensus       161 l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         161 LPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred             cccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence            9999999999999999999999999999999999976544

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=3.8e-42  Score=350.17  Aligned_cols=205  Identities=20%  Similarity=0.294  Sum_probs=184.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcc
Q 004918            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (724)
Q Consensus         1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   79 (724)
                      |.|++|.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++.... ..+.
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~-~~~~   87 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGT-PHDW   87 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSS-HHHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhccc-ccch
Confidence            4588899999 7899999999996 69999999999999999999999999999999999999999999885432 2223


Q ss_pred             cccchhHHHHHHHHHhcCCCcEEEEECccccchhHHHHhhcCEEEEeCCceee-CcccccCccCCcchhhhhcccccHHH
Q 004918           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG-LPELTLGVIPGFGGTQRLPRLVGLSK  158 (724)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~-~pe~~~G~~P~~g~~~~l~r~~G~~~  158 (724)
                      ..+....+.++ +.+.++||||||+|||+|.| |++|+++||+||++++++|. +||+++|++|++|++++|+|++|..+
T Consensus        88 ~~~~~~~~~l~-~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~  165 (249)
T d1szoa_          88 DEIIFEGQRLL-NNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR  165 (249)
T ss_dssp             HHHHHHHHHHH-HHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred             hhhhhhhhhhh-hhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence            33344455666 67999999999999998855 77999999999999999995 79999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHccCchhhh
Q 004918          159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  209 (724)
Q Consensus       159 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~  209 (724)
                      +++|+++|++++++||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus       166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  216 (249)
T d1szoa_         166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR  216 (249)
T ss_dssp             HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999886554

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.1e-38  Score=307.57  Aligned_cols=185  Identities=32%  Similarity=0.626  Sum_probs=180.9

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      +.|+||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.+.+.+..+.+++...+..++++..+++++++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      .+||+||||+||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCC
Q 004918          466 AQVILDLMTVGKIIKKVPVVVGNCT  490 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~v~d~p  490 (724)
                      +++++.+..|++.+||.||+++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=306.89  Aligned_cols=185  Identities=33%  Similarity=0.521  Sum_probs=175.6

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCC-----HHHHHHhhcCccccc
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-----QDKANNALKMLKGVL  380 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~  380 (724)
                      +.|+||+|||+|.||++||..++++|++|++||++++.++++.+++++.+...++++...     ....+..+.++..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            468999999999999999999999999999999999999999999999999999988874     344566778999998


Q ss_pred             Cc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe
Q 004918          381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  459 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii  459 (724)
                      ++ +++++||+||||+||+.++|+++|+++++.+++++||+||||++++++++..+.+|+||+|+|||||++.+|+|||+
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv  161 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI  161 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence            87 66999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT  490 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~p  490 (724)
                      +++.|++++++.+.+|++.+||.||+++|.|
T Consensus       162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            9999999999999999999999999999987

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.93  E-value=2e-26  Score=195.09  Aligned_cols=94  Identities=30%  Similarity=0.588  Sum_probs=90.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCCCCCCC
Q 004918          618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS  697 (724)
Q Consensus       618 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~  697 (724)
                      +++++|+||++++++|||++|+++||+.+++|||.++++|+|||+|+||||+++|.+|+++++++++.+. +++++|+|+
T Consensus         2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~   80 (95)
T d1wdka2           2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPT   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCC
Confidence            5789999999999999999999999998999999999999999999999999999999999999999985 588999999


Q ss_pred             HHHHHHHHcCCCCCC
Q 004918          698 RFLEERATKGIPLSA  712 (724)
Q Consensus       698 ~~l~~~~k~g~gfy~  712 (724)
                      ++|++|+|+|+|||-
T Consensus        81 ~~L~~~~~~g~~Fyg   95 (95)
T d1wdka2          81 AKLREMAKNGQSFFG   95 (95)
T ss_dssp             HHHHHHHHTTCCSCC
T ss_pred             HHHHHHHHhCcCCCC
Confidence            999999999999993

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.92  E-value=3.8e-26  Score=204.28  Aligned_cols=104  Identities=40%  Similarity=0.706  Sum_probs=90.4

Q ss_pred             chhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC--CCCcHHHHHHH
Q 004918          491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLL  568 (724)
Q Consensus       491 G~i~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v  568 (724)
                      |||+||++.++++||++++++|+++++||.++..+|||+|||+++|.+|||+++++.+.+++.++++  ..+++++++||
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            8999999999999999999999999999999988999999999999999999999999999988764  23678999999


Q ss_pred             HcCCCCcccCccceeccCCCCCCCCC
Q 004918          569 KSGRNGKANGKGLYTYEKGSKPKPDP  594 (724)
Q Consensus       569 ~~g~~G~k~g~Gfy~y~~~~~~~~~~  594 (724)
                      ++|++|+|||+|||+|+++++..+++
T Consensus        81 ~~g~lG~Ktg~GFY~y~~~~~~~~~~  106 (124)
T d1wdka1          81 EAKRLGQKNGKGFYAYEADKKGKQKK  106 (124)
T ss_dssp             HTTCCBTTTTBSSSEEC-------CE
T ss_pred             HcCCccccCCcEeeEcCCCCCCCCCC
Confidence            99999999999999998755433333

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-25  Score=190.67  Aligned_cols=95  Identities=33%  Similarity=0.562  Sum_probs=89.4

Q ss_pred             chhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC--CCCcHHHHH
Q 004918          491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDL  566 (724)
Q Consensus       491 G~i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~g~~~Gp~~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~  566 (724)
                      |||+||++.++++||++++++|+ +|++||.++ .++|+|+|||+++|.+|||++.++++.+.+.++++  ..|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            89999999999999999999997 999999999 78999999999999999999999999999987763  348899999


Q ss_pred             HHHcCCCCcccCccceecc
Q 004918          567 LLKSGRNGKANGKGLYTYE  585 (724)
Q Consensus       567 ~v~~g~~G~k~g~Gfy~y~  585 (724)
                      |+++|++|+|||+|||+|+
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999994

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.6e-21  Score=162.75  Aligned_cols=90  Identities=26%  Similarity=0.362  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC--CCCCCH
Q 004918          621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSR  698 (724)
Q Consensus       621 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~  698 (724)
                      ++|+||++.+++|||++|+++|++ ||++||.+++.++|||+   |||+++|.+|+|++.++++.|.+..++  ++.|++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~---Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~   76 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSP   76 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCC---chHHHHHhhcHHHHHHHHHHHHHhcccccccCCCH
Confidence            478999999999999999999999 89999999999999998   999999999999999999999988764  789999


Q ss_pred             HHHHHH-------HcCCCCCCCC
Q 004918          699 FLEERA-------TKGIPLSAPV  714 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~  714 (724)
                      +|++|+       |+|+|||+|+
T Consensus        77 ~l~~mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          77 SLNKLVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHcCCCcccCCCcccccC
Confidence            999999       7899999994

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.74  E-value=2e-17  Score=156.02  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=118.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||+|.||+++|..|.++|++|++|||+++.++++.+           .+.+           -...++.+++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~-----------~~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLV-----------DEAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhcc-----------ceeeeeccccccc
Confidence            47999999999999999999999999999999998776532           2211           1234566889999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCC------------CCee
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV------------MPLL  456 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~------------~~lv  456 (724)
                      |+||.|+|  .....++++++.+.++++++|++.+|. .............++++.|+..++..            +..+
T Consensus        59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~  135 (165)
T d2f1ka2          59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (165)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             ccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence            99999999  778889999999999999998765544 33222222222347899999765422            3345


Q ss_pred             eEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004918          457 EIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       457 eii~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (724)
                      .+++...++++.++.++++++.+|.+++.|
T Consensus       136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            577888899999999999999999997764

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.72  E-value=2e-18  Score=153.67  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHhhhCC--CCCCCH
Q 004918          621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSR  698 (724)
Q Consensus       621 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~  698 (724)
                      +||+||++.++++||++++++|+  ++++||.++. ++|||+   |||+++|.+|+|+++++++.+.+.+++  .+.|++
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~--~~~~ID~a~~-~~G~p~---Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~   74 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVME-KFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRS   74 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCC
T ss_pred             CchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHh-hccCCC---CHHHHHHhcchHHHHHHHHHHHHhcCcccccCcch
Confidence            47899999999999999999996  4999999985 899998   999999999999999999999888764  577888


Q ss_pred             HHHHHH-------HcCCCCCCCCCCCc
Q 004918          699 FLEERA-------TKGIPLSAPVSSSS  718 (724)
Q Consensus       699 ~l~~~~-------k~g~gfy~~~~~~~  718 (724)
                      ++++|+       |+|+|||+|++..+
T Consensus        75 ~l~~mv~~g~lG~Ktg~GFY~y~~~~~  101 (124)
T d1wdka1          75 AIDALYEAKRLGQKNGKGFYAYEADKK  101 (124)
T ss_dssp             HHHHHHHTTCCBTTTTBSSSEEC----
T ss_pred             HHHHHHHcCCccccCCcEeeEcCCCCC
Confidence            999999       89999999965443

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.70  E-value=1.3e-17  Score=140.38  Aligned_cols=83  Identities=14%  Similarity=0.302  Sum_probs=76.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHHHHHHHHHhCCCCCCCcHHHH
Q 004918          492 FAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVD  565 (724)
Q Consensus       492 ~i~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~g~~~---Gp~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~  565 (724)
                      -|+||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|.+|+|.+.++++.+. ++++++.|+++|+
T Consensus         6 ~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L~   84 (95)
T d1wdka2           6 DIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKLR   84 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHHH
Confidence            4899999999999999999996  899999999 9999999   9999999999999999999875 5787777999999


Q ss_pred             HHHHcCCCCcccCccce
Q 004918          566 LLLKSGRNGKANGKGLY  582 (724)
Q Consensus       566 ~~v~~g~~G~k~g~Gfy  582 (724)
                      +|+++       |+|||
T Consensus        85 ~~~~~-------g~~Fy   94 (95)
T d1wdka2          85 EMAKN-------GQSFF   94 (95)
T ss_dssp             HHHHT-------TCCSC
T ss_pred             HHHHh-------CcCCC
Confidence            99855       46998

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.68  E-value=1.9e-16  Score=150.06  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=117.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--c
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  383 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  383 (724)
                      |+||+|||+|.||++||..|.++|+  +|++||++++.++.+.+           .+.++           ...++.  .
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence            5789999999999999999999996  78899999998877542           22111           112232  3


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCCCCCEEEEecCCCC-----------
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPA-----------  450 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~p~-----------  450 (724)
                      ...++|+||.|+|  ++...+++.++.++++++++|++.+|+...  ..+...+  +.+|++.||....           
T Consensus        59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence            3458999999999  788889999999999999999887776443  2333322  4589999995433           


Q ss_pred             -CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004918          451 -HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       451 -~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (724)
                       ..+..+-++++..++++.++.++.|++.+|.+++.+
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYM  171 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence             124456688899999999999999999999888753

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.58  E-value=5.7e-15  Score=136.84  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=121.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.||.+|+..|.++| ++|++|||++++++...++                       ..+...++.+++.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence            48999999999999999998877 8999999999987764321                       12445667788899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEe-cCCCCCH
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSA  466 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii-~~~~t~~  466 (724)
                      ||+||.||+  ++...++++++   .+.+.+++|..++.+++.+.+.+....+++..+|..|...+..+..+ .+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999997  66556665554   34577889999999999999988877789999999999888877755 5666789


Q ss_pred             HHHHHHHHHHHHcCCeeE
Q 004918          467 QVILDLMTVGKIIKKVPV  484 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~v  484 (724)
                      +..+.+..++..+|+...
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.57  E-value=1.5e-15  Score=142.32  Aligned_cols=152  Identities=17%  Similarity=0.186  Sum_probs=105.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.+||.+|+++||+|++|||++++++...+           .+             ....++. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------hh-------------hhhcccHHHHHhC
Confidence            47999999999999999999999999999999998776532           11             2223333 56789


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeeeEe
Q 004918          388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  459 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveii  459 (724)
                      ||+||.|||++.++...++  ..+.+.++++++|++.++..+-.  +++..+. ..-+|+.......+   ..+++.-++
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~  136 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  136 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence            9999999997766665554  34888889999887654443322  3333332 22334443222111   223444445


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          460 RTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       460 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      .|   +++++++++++++.+|+++++++
T Consensus       137 gG---~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         137 GG---DKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cC---CHHHHHHHHHHHHHhcCceEECC
Confidence            55   68999999999999999988874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=5.6e-15  Score=136.93  Aligned_cols=142  Identities=15%  Similarity=0.100  Sum_probs=109.6

Q ss_pred             CCCCCCcceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          302 GLKPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       302 ~~~~~~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      ..+...|+||+||| +|.||++||.+|.++||+|++||++++....                                  
T Consensus         3 ~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~----------------------------------   48 (152)
T d2pv7a2           3 KTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE----------------------------------   48 (152)
T ss_dssp             CCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH----------------------------------
T ss_pred             cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc----------------------------------
Confidence            34567789999999 8999999999999999999999998764322                                  


Q ss_pred             CccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccCCCCCEEEEecCCCCCCC----C
Q 004918          381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVM----P  454 (724)
Q Consensus       381 ~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~~~r~ig~h~~~p~~~~----~  454 (724)
                        +.+.++|+++.++|  ......++.++.+.++++++|++.+|..+.  ..+.+.  .+.+|++.||...+...    .
T Consensus        49 --~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~  122 (152)
T d2pv7a2          49 --SILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQ  122 (152)
T ss_dssp             --HHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTC
T ss_pred             --hhhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCc
Confidence              23568999999998  777778999999999999999876654332  223332  35689999997665433    3


Q ss_pred             eeeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004918          455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (724)
Q Consensus       455 lveii~~~~t~~e~~~~~~~l~~~lGk~~v~  485 (724)
                      .+.++++.  +++.++++.++++.+|.+++.
T Consensus       123 ~~v~~~g~--~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         123 VVVRCDGR--FPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEEEEEEE--CGGGTHHHHHHHHHTTCEEEE
T ss_pred             EEEEecCC--CHHHHHHHHHHHHHhCCEEEe
Confidence            34445443  577899999999999998875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.53  E-value=1.7e-14  Score=133.48  Aligned_cols=146  Identities=13%  Similarity=0.090  Sum_probs=116.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||++|+..|.++|++|++|++++++.++..+..                       .+..+.+. +.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------------------ceeeechhhhhhhc
Confidence            4799999999999999999999999999999998876543210                       12334444 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeee-EecCCCCCH
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTERTSA  466 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-ii~~~~t~~  466 (724)
                      ||+||.||+  ++...+++    +.+.++.+|+|.++++.++.+...+....+++.++|..|........ +..+..+++
T Consensus        58 ~dvIilavk--p~~~~~vl----~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIK--PQLFETVL----KPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSC--GGGHHHHH----TTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecc--hHhHHHHh----hhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            999999997  55555554    44677888999999999999998887777899999987777665555 445777899


Q ss_pred             HHHHHHHHHHHHcCCee
Q 004918          467 QVILDLMTVGKIIKKVP  483 (724)
Q Consensus       467 e~~~~~~~l~~~lGk~~  483 (724)
                      +..+.++++++.+|+..
T Consensus       132 ~~~~~v~~l~~~~G~~~  148 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTF  148 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            99999999999999753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=9.7e-14  Score=129.77  Aligned_cols=152  Identities=15%  Similarity=0.139  Sum_probs=104.4

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      |+||+|||+|.||++||.+|+++||+|++||+++++.+....           .+            .....+..+.+.+
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~~------------~~~~~~~~e~~~~   57 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG------------ASAARSARDAVQG   57 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT------------CEECSSHHHHHTS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------hh------------ccccchhhhhccc
Confidence            679999999999999999999999999999999998776432           11            1111222267889


Q ss_pred             CCEEEEcccCChHHHHHHHH---HHHhhCCCCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCC---CCCCeee
Q 004918          388 VDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  457 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~---~~~~lve  457 (724)
                      +|+|+.|||.+... ++++.   .+...+.++.+|+.. |+..++   ++...+. ..-+|+..+....|   ..+++.-
T Consensus        58 ~diii~~v~~~~~~-~~v~~~~~~~~~~l~~g~iiid~-st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          58 ADVVISMLPASQHV-EGLYLDDDGLLAHIAPGTLVLEC-STIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             CSEEEECCSCHHHH-HHHHHSTTCHHHHSCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             cCeeeecccchhhH-HHHHhccccccccCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            99999999966554 45553   367778888888744 343333   3333332 22344443322211   2334444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004918          458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG  487 (724)
Q Consensus       458 ii~~~~t~~e~~~~~~~l~~~lGk~~v~v~  487 (724)
                      ++.|   +++++++++++++.+|+.+++++
T Consensus       136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVGG---DAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence            5555   68999999999999999988874

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=9.6e-16  Score=150.84  Aligned_cols=203  Identities=14%  Similarity=0.106  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcceEEEEcCCC--CcHHHHH------HHHHCCCcEEEEeCCHHHH-HHH
Q 004918          277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL--MGSGIAT------AHILNNIYVVLKEVNSEYL-LKG  347 (724)
Q Consensus       277 ~~~~~~~~af~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~--mG~~iA~------~la~~G~~V~l~d~~~~~~-~~~  347 (724)
                      .+++.++..|.......|..+.+.    ....+++.++|+|+  ||.+|+.      +|++.|+.|++.|.+++.+ +++
T Consensus        13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~   88 (242)
T d2b0ja2          13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH   88 (242)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred             chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence            345555566655444333322211    12346789999997  9999988      7899999999999998764 333


Q ss_pred             HHH--------HHHHHHhhHhcCCCCHHHH----HHhhcCcccccCc-cCcCCCCEEEEcccCChHHHHHHHHHHHhhCC
Q 004918          348 IKT--------IEANVRGLVTRGKLTQDKA----NNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACP  414 (724)
Q Consensus       348 ~~~--------i~~~~~~~~~~g~~~~~~~----~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~  414 (724)
                      .+.        ++..+.+..+....+....    ..-...+..++|. +++++||+||+|+|++ +.++++++++.++++
T Consensus        89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~  167 (242)
T d2b0ja2          89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIP  167 (242)
T ss_dssp             HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSC
T ss_pred             hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCC
Confidence            321        2222222223222111100    0000124455565 8899999999999955 678899999999999


Q ss_pred             CCcEEEecCCCCCHH---HHhcccC-CCCCEEEEecCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004918          415 PHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  486 (724)
Q Consensus       415 ~~~ii~s~ts~~~~~---~~~~~~~-~~~r~ig~h~~~p~~~~~lveii~~~~t~~e~~~~~~~l~~~lGk~~v~v  486 (724)
                      +++||++.+ +.+..   ++.+.+. ...+|++.||.+++.......++.+ .++++.+++++++++.+|+.++++
T Consensus       168 ~g~Iiid~S-Ti~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         168 EGAIVTHAC-TIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             TTCEEEECS-SSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCcEEEecC-CCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            999986544 44433   4545554 3568999999998876665555544 578999999999999999998876

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.23  E-value=4.4e-13  Score=127.04  Aligned_cols=155  Identities=11%  Similarity=-0.010  Sum_probs=99.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      .+|+|||+|.||.+||.+|+++||+|++|||++++++...+.       ..+....        .......+..+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~~~~--------~~a~~~~~~~~~~~~~   67 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-------EAKGTKV--------LGAHSLEEMVSKLKKP   67 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-------TTTTSSC--------EECSSHHHHHHHBCSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh-------ccccccc--------cchhhhhhhhhhhccc
Confidence            579999999999999999999999999999999998775321       0000000        0000111112567899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeeeEecCC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTE  462 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lveii~~~  462 (724)
                      |.+|.+++....+ .+++..+.+.++++++++..++..+.+  +++..+. ...+++.......+   ..+. .-++.| 
T Consensus        68 ~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG-  144 (176)
T d2pgda2          68 RRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG-  144 (176)
T ss_dssp             CEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE-
T ss_pred             ceEEEecCchHHH-HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC-
Confidence            9999999976554 457788999999999887654443332  3333332 22234433221111   1112 223333 


Q ss_pred             CCCHHHHHHHHHHHHHcCCee
Q 004918          463 RTSAQVILDLMTVGKIIKKVP  483 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~  483 (724)
                        +++++++++++++.+++++
T Consensus       145 --~~~~~~~~~~il~~~~~kv  163 (176)
T d2pgda2         145 --NKEAWPHIKAIFQGIAAKV  163 (176)
T ss_dssp             --CTTTHHHHHHHHHHHSCBC
T ss_pred             --CHHHHHHHHHHHHHHhccc
Confidence              5788999999999999875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=4.3e-12  Score=117.14  Aligned_cols=142  Identities=8%  Similarity=-0.062  Sum_probs=92.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCCE
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  390 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  390 (724)
                      |+|||+|.||.+|+..|.+.++.+.+|+|+++++++..+.           +            .....+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~-----------~------------~~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEV-----------Y------------GGKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHH-----------T------------CCCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhc-----------c------------cccccchhhhhccCcE
Confidence            7999999999999999877665567999999998775431           1            1122344477899999


Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCC--------eeeEecCC
Q 004918          391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--------LLEIVRTE  462 (724)
Q Consensus       391 VIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~--------lveii~~~  462 (724)
                      ||.|||++  ...+++.++   ..++.++++.+++.+...+..     .+..+.||..++....        .+-.+.+ 
T Consensus        59 Vil~v~d~--~i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-  127 (153)
T d2i76a2          59 VFVIVPDR--YIKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLEG-  127 (153)
T ss_dssp             EEECSCTT--THHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEECC-
T ss_pred             EEEeccch--hhhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEeC-
Confidence            99999943  444555544   246788887777777654432     2345778755432111        1112222 


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          463 RTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       463 ~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                        ++++++.++++++.+|.+++++.+
T Consensus       128 --d~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         128 --DERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             --CTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             --CHHHHHHHHHHHHHHCCcEEEeCC
Confidence              578899999999999999988754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.17  E-value=4.5e-12  Score=121.06  Aligned_cols=110  Identities=13%  Similarity=0.098  Sum_probs=81.5

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cC
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  384 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  384 (724)
                      +.|+||+|||+|.||+++|..|+++|++|++|+|+++.++...+.-++  ..+.+.-.        ...++.+++++ ++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n--~~yl~~~~--------l~~~i~~t~~l~~a   74 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKREN--VLFLKGVQ--------LASNITFTSDVEKA   74 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBC--TTTSTTCB--------CCTTEEEESCHHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccc--cccccccc--------cccccccchhhhhc
Confidence            457899999999999999999999999999999999988765432110  00111111        22567888887 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhh-----CCCCcEEEecCCCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKA-----CPPHCILATNTSTID  427 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~-----~~~~~ii~s~ts~~~  427 (724)
                      +++||+||.|||  .+..+++++++.+.     ..++.+|++.+.++.
T Consensus        75 ~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie  120 (189)
T d1n1ea2          75 YNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  120 (189)
T ss_dssp             HTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             cCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence            899999999999  88889999887653     345666666665553

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=3e-11  Score=111.72  Aligned_cols=144  Identities=14%  Similarity=0.136  Sum_probs=100.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCCC
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  389 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  389 (724)
                      ||+|||+|.||.+||.+|.++|+.| +|++++++..+..+..          +              ......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~----------~--------------~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF----------G--------------SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHH----------C--------------CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHc----------C--------------Cccccccccccee
Confidence            7999999999999999999999865 6888877765533210          0              1133446778999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHhcccCCCCCEEEEecCCCC--------CCCCeeeE
Q 004918          390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HVMPLLEI  458 (724)
Q Consensus       390 lVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~--------~~~~lvei  458 (724)
                      ++|.++|.+.++. .+...+.....++.+++. +|+..++   +++..+...    +.+|.+.|        ..+.+.-+
T Consensus        57 ~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid-~sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~L~~~  130 (156)
T d2cvza2          57 VIFTCLPTTREVY-EVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGTLTVM  130 (156)
T ss_dssp             EEEECCSSHHHHH-HHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTCEEEE
T ss_pred             EEEecccchhhhh-hhhccccccccccccccc-cccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCCEEEE
Confidence            9999999765544 556778888888888764 4444443   344444322    45665544        23345555


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004918          459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN  488 (724)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  488 (724)
                      +.|   ++++++++++++ .++++++++++
T Consensus       131 vgG---~~~~~~~~~p~L-~~~~~v~~~GP  156 (156)
T d2cvza2         131 LGG---PEEAVERVRPFL-AYAKKVVHVGP  156 (156)
T ss_dssp             EES---CHHHHHHHGGGC-TTEEEEEEEES
T ss_pred             EeC---CHHHHHHHHHHH-HhcCcCEEeCc
Confidence            555   699999999999 59999988863

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.12  E-value=1.5e-11  Score=113.36  Aligned_cols=147  Identities=13%  Similarity=0.035  Sum_probs=91.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.+||..|+++||+|++||+++.........         .               +....+. +.+++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---------~---------------~~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---------T---------------VGVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------H---------------HTCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---------c---------------ccccccHHHHHhh
Confidence            479999999999999999999999999999887765443211         0               1112223 66889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccCCCCCEEEEecCCCCCC--CCeeeEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTER  463 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~--~~lveii~~~~  463 (724)
                      ||+||.|||.+.  ..++..++....  +.+++..++..  ....+++.++. .+++......++..  ....-++.|+ 
T Consensus        57 ~diIi~~v~~~~--~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~-  130 (152)
T d1i36a2          57 CPVVISAVTPGV--ALGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGR-  130 (152)
T ss_dssp             SSEEEECSCGGG--HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEEST-
T ss_pred             cCeEEEEecCch--HHHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECC-
Confidence            999999999543  345556666554  33444322222  23455555543 35666665543311  1112244555 


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004918          464 TSAQVILDLMTVGKIIKKVPVVVGNCT  490 (724)
Q Consensus       464 t~~e~~~~~~~l~~~lGk~~v~v~d~p  490 (724)
                       +.+.++    .+..+|..+.++++.|
T Consensus       131 -~~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         131 -DAEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             -THHHHH----GGGGGTCEEEECSSST
T ss_pred             -CHHHHH----HHHHcCCeeeEcCCCC
Confidence             334443    3678999998888766

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=1.2e-10  Score=109.98  Aligned_cols=155  Identities=14%  Similarity=0.057  Sum_probs=99.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC----ccC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----YSE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~  384 (724)
                      +||+|||+|.||.+||.+|+++||+|++|||++++.+...+.           +.....     ........+    ...
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-----------NASAPF-----AGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-----------TTTSTT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-----------CCcccc-----ccchhhhhhhhHHHHh
Confidence            379999999999999999999999999999999998775432           111000     001111111    134


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHhcccC-CCCCEEEEecCCCC---CCCCeeeE
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  458 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lvei  458 (724)
                      +..++.++++++..... ..++..+...+.++++++..++..+..  .++..+. ..-.++....+..+   ..+. .-+
T Consensus        66 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~m  143 (178)
T d1pgja2          66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFF  143 (178)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred             cccceEEEEeecCcchh-hhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEE
Confidence            57788888888855554 456677888888988886544433322  3344433 33355554433222   1111 223


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004918          459 VRTERTSAQVILDLMTVGKIIKKVPV  484 (724)
Q Consensus       459 i~~~~t~~e~~~~~~~l~~~lGk~~v  484 (724)
                      +.|   +++++++++++++.+++.+.
T Consensus       144 vgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         144 PGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             eeC---CHHHHHHHHHHHHHHhcccc
Confidence            444   68999999999999998875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.06  E-value=5.5e-11  Score=112.80  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=74.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      +||+|||+|.||.++|..|+++||+|++||++++.++...+...    ........     .........+++. +.+++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~e~~~~   72 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA----IIAEGPGL-----AGTAHPDLLTSDIGLAVKD   72 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS----EEEESSSC-----CEEECCSEEESCHHHHHTT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC----Cchhhhhh-----hhhhhhhhhhhhhHhHhcC
Confidence            68999999999999999999999999999999998776543100    00000000     0000122234454 66899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      ||+||.|+|  ......+++++.+++.++++|+..
T Consensus        73 aD~iii~v~--~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          73 ADVILIVVP--AIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CCEEEEEEc--hhHHHHHHHHhhhccCCCCEEEEe
Confidence            999999998  666789999999999999987643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.03  E-value=1.8e-09  Score=103.94  Aligned_cols=166  Identities=14%  Similarity=0.118  Sum_probs=95.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHH--HHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA--NNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~--~~~~~~i~~~~~~-~~~  385 (724)
                      +||+|||+|.+|.++|..|+++||+|++||.|++.++...+...    ...+.+ + .+..  .....++..++++ +++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~----p~~e~~-~-~~~l~~~~~~~~~~~~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKS----PIVEPG-L-EALLQQGRQTGRLSGTTDFKKAV   74 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC----SSCCTT-H-HHHHHHHHHTTCEEEESCHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCC----cccchh-h-hhhhhhhhcccccccCCCHHHHH
Confidence            47999999999999999999999999999999998877542100    000000 0 0000  1112456677777 568


Q ss_pred             CCCCEEEEcccCC--------hHHHHHHHHHHHhh---CCCCcEEEecCCCCCH-H-HHh-----cccC--CCCCE-EEE
Q 004918          386 KDVDMVIEAVIES--------VPLKQKIFSELEKA---CPPHCILATNTSTIDL-N-IVG-----EKTS--SQDRI-IGA  444 (724)
Q Consensus       386 ~~aDlVIeav~e~--------~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~~-~-~~~-----~~~~--~~~r~-ig~  444 (724)
                      .+||+++.|||.+        ......+...+...   ..++++|+..++..+- + .+.     ....  ....| +..
T Consensus        75 ~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~  154 (202)
T d1mv8a2          75 LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT  154 (202)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEE
T ss_pred             hhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchh
Confidence            9999999999863        33444555544433   4466666543333222 1 111     1111  11112 222


Q ss_pred             ecCCCCCCCCe----------eeEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004918          445 HFFSPAHVMPL----------LEIVRTERTSAQVILDLMTVGKIIKKVPVV  485 (724)
Q Consensus       445 h~~~p~~~~~l----------veii~~~~t~~e~~~~~~~l~~~lGk~~v~  485 (724)
                         +|-...+.          .-|+.+  .+++..+.+.++++.+....+.
T Consensus       155 ---~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         155 ---NPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             ---CCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred             ---hhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence               22222111          013343  3689999999999998876554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.96  E-value=9.6e-11  Score=110.92  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=71.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC--HHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      +||+|||+|.||+++|..|+++|++|++|.|+  ++.++...+.        .....+.   .......+..++++ +++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~--------~~~~~~~---~~~~~~~i~~~~~~~~~~   69 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG--------REHPRLG---VKLNGVEIFWPEQLEKCL   69 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT--------CCBTTTT---BCCCSEEEECGGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhh--------hhhhhhc---chhccccccccccHHHHH
Confidence            48999999999999999999999999999885  4333332110        0000000   00001234556666 568


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +++|+||.|||  .+..+++++++.++++++.+++.
T Consensus        70 ~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccc--hhhhHHHHHhhccccccceeccc
Confidence            99999999999  88999999999999988776653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.81  E-value=1.7e-09  Score=98.40  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|.++|..++..|+  +++++|++++.++.....+.+...   ...          ......+.++++++
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~---~~~----------~~~~~~~~d~~~l~   73 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV---FAP----------KPVDIWHGDYDDCR   73 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT---SSS----------SCCEEEECCGGGTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcc---ccC----------CCeEEEECCHHHhc
Confidence            699999999999999999999886  899999999886543333322110   000          01223466789999


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEE-ecCCCCCHHHHhcccC-CCCCEEEE
Q 004918          387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      +||+||.+...              +.++.+++.+++.+++++..+++ ||........+..... .+.|++|+
T Consensus        74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            99999987632              45677788888998876554332 3333222223333333 34678774

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.77  E-value=4.6e-09  Score=95.07  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=79.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      -+||+|||+|.+|.++|..++..|.  +|+++|++++.++....++.+.   ....+           .....+.+++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~~-----------~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFTA-----------PKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGSC-----------CCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---ccccC-----------CceEeeccHHHh
Confidence            3599999999999999999999884  8999999998765432222211   01111           234456788999


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEE--ecCCCCCHHHHhcccC-CCCCEEEE
Q 004918          386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       386 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      ++||+||.+...              +..+.+++..++.++++.. +++  ||........+..... .+.|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~a-ivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDG-IFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCS-EEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCc-EEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            999999998731              2446667778888876554 444  3333222223333444 34677774

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.76  E-value=6.8e-09  Score=93.47  Aligned_cols=123  Identities=25%  Similarity=0.357  Sum_probs=81.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .||+|||+|.+|+++|..++..|.  +++++|++++.++.-...+++... .  .+          ...+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~-~--~~----------~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-F--YP----------TVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-G--ST----------TCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc-c--CC----------CceeecCCCHHHhh
Confidence            589999999999999999999987  899999999876543333332111 0  00          12345567789999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEE-EecCCCCCHHHHhcccC-CCCCEEEE
Q 004918          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii-~s~ts~~~~~~~~~~~~-~~~r~ig~  444 (724)
                      +||+||.+.-              .+.++.+++..++.++.+...++ +||........+..... .+.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            9999998872              25567778888888887555433 23332222222333333 45788874

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=1.2e-08  Score=91.80  Aligned_cols=123  Identities=17%  Similarity=0.313  Sum_probs=80.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.-...+++......            ...++..++++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~------------~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID------------KYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTT------------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccC------------CCCccccCCCHHHhc
Confidence            489999999999999999998886  799999999886643333333221110            012456677889999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-H-HHhcccC-CCCCEEEE
Q 004918          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDL-N-IVGEKTS-SQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~-~~~~~~~-~~~r~ig~  444 (724)
                      +||+||.+..              .+..+.+++..++.+++ ++++++..|....+ + .+..... .+.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            9999998873              13445566667777776 45666544443222 1 2233333 46778874

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.73  E-value=7.1e-09  Score=93.63  Aligned_cols=121  Identities=19%  Similarity=0.217  Sum_probs=78.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .||+|||+|.+|.++|..++..|.  +++++|++++.++.....+.......            .....+..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~------------~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG------------LFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH------------TCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchh------------cccceEEecCCHHHhc
Confidence            489999999999999999999985  89999999987654332222111100            0112355567889999


Q ss_pred             CCCEEEEccc--C------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH----hcccC-CCCCEEEE
Q 004918          387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTS-SQDRIIGA  444 (724)
Q Consensus       387 ~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~----~~~~~-~~~r~ig~  444 (724)
                      +||+||.+.-  .            +..+.+++.+.+.++++ +++++..|.  |+..+    ..... .+.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtN--Pvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecC--ChHHHHHHHHHHhCCChHhEeeC
Confidence            9999999862  1            34466677788888875 555543222  33322    22233 34678875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.65  E-value=1.7e-08  Score=91.20  Aligned_cols=121  Identities=19%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+...   ...          ......+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~---~~~----------~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE----------AHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS----------SCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc---ccC----------CccceeccCHHHhc
Confidence            799999999999999999998875  899999999876643333332211   001          01123356789999


Q ss_pred             CCCEEEEcccC------------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCC-HHH-HhcccC-CCCCEEE
Q 004918          387 DVDMVIEAVIE------------------SVPLKQKIFSELEKACPPHCILATNTSTID-LNI-VGEKTS-SQDRIIG  443 (724)
Q Consensus       387 ~aDlVIeav~e------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~~-~~~~~~-~~~r~ig  443 (724)
                      +||+||.+...                  +..+.+++.+.+.+++ |+++++..|.... ++. +..... .+.|++|
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG  145 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence            99999988531                  2345566667777766 4566654443322 222 223333 3456776

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.62  E-value=2.6e-08  Score=89.73  Aligned_cols=102  Identities=14%  Similarity=0.220  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||+|||+|.+|.++|..++..+. +++++|++++.+......+.....            ......++..+.+++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~------------~~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc------------ccCCCCEEEecCcHHHhcC
Confidence            599999999999999999998876 899999998876553333222110            0011124566788999999


Q ss_pred             CCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +|+||.+...              +.++.+++..++.++++. ++++..|
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~-aivivvt  118 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPN-AVIIMVN  118 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTT-CEEEECS
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCC-ceEEEeC
Confidence            9999998831              233556777778877654 4554433

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=3.2e-08  Score=88.83  Aligned_cols=119  Identities=21%  Similarity=0.290  Sum_probs=76.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcC-cccccCccCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-LKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  385 (724)
                      .||+|||+|.+|.++|..++..|.  +++++|++++.++.....+.....               .... ...+.+++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~---------------~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP---------------FTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---------------GSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc---------------ccccccccCCcHHHh
Confidence            489999999999999999998875  899999999876643333322110               1111 2235577899


Q ss_pred             CCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCCC-HH-HHhcccC-CCCCEEE
Q 004918          386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID-LN-IVGEKTS-SQDRIIG  443 (724)
Q Consensus       386 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~-~~~~~~~-~~~r~ig  443 (724)
                      ++||+||.+.-              .+.++.+++.+.+.++++.. +++..|.... ++ .+..... .+.|++|
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~a-ivivvtNPvd~~t~~~~k~sg~p~~rViG  139 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDS-IVIVVTNPVDVLTYFFLKESGMDPRKVFG  139 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTC-EEEECSSSHHHHHHHHHHHHTCCTTTEEE
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCc-EEEEeCCcHHHHHHHHHHHHCcCccceeC
Confidence            99999999872              14456677778888887654 4443332211 12 2223333 4567776

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.61  E-value=3.6e-08  Score=90.14  Aligned_cols=121  Identities=18%  Similarity=0.235  Sum_probs=78.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.+..-..++.+.   ....+          ...+....++++++
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~---~~~~~----------~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG---SLFLQ----------TPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT---GGGCC----------CSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc---ccccC----------CCeEEeccchhhcc
Confidence            699999999999999999999998  8999999988765433333221   00001          01233456789999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEE
Q 004918          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIG  443 (724)
Q Consensus       387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig  443 (724)
                      +||+||.+..              .+..+.+++..++.+..++. +++..|..  .....+..... .++|++|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~a-iiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC-IIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTC-EEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998762              14456777778888886554 44433332  22223333334 3456665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=5.7e-09  Score=96.79  Aligned_cols=104  Identities=12%  Similarity=-0.050  Sum_probs=74.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +||+|||+|.||+.+|..|+++|++|++|+|+++..+..           ...+.-     .........+++.+.+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETD-----GSIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTT-----SCEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-----------ccccCC-----ccccccccccchhhhhccc
Confidence            489999999999999999999999999999998653321           000000     0000112223344667899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      |+||.+++  ..-..++++.+.+.++++++|++...++...+
T Consensus        65 D~iii~vk--a~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          65 DLLLVTLK--AWQVSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             SEEEECSC--GGGHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ceEEEeec--ccchHHHHHhhccccCcccEEeeccCcccHHH
Confidence            99999998  55667888999999999998877666665443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.57  E-value=4e-08  Score=89.71  Aligned_cols=126  Identities=19%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      ++-+||+|||+|..|.++|..++..++ +++++|++++.++.....+.+..... ..           ...+..++++ +
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~-~~-----------~~~~~~~~~~~~   72 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV-DT-----------NVSVRAEYSYEA   72 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT-TC-----------CCCEEEECSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc-CC-----------eeEEeccCchhh
Confidence            345799999999999999999988886 89999999987665544443322111 00           0123445555 5


Q ss_pred             CcCCCCEEEEcccC-------------------ChHHHHHHHHHHHhhCCCCcEEEecCCCC--CHHHHhcccC-CCCCE
Q 004918          384 EFKDVDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRI  441 (724)
Q Consensus       384 ~~~~aDlVIeav~e-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~-~~~r~  441 (724)
                      ++++||+||.+...                   +..+.+++..++.+++++ ++++..|...  ....+..... .+.|+
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~rV  151 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTNMI  151 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChhcE
Confidence            78999999997721                   233667777888888765 4554433332  1122223333 35677


Q ss_pred             EEE
Q 004918          442 IGA  444 (724)
Q Consensus       442 ig~  444 (724)
                      +|+
T Consensus       152 iG~  154 (154)
T d1pzga1         152 CGM  154 (154)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            774

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.50  E-value=8.4e-08  Score=86.37  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      .||+|||+ |.+|.++|..++..|.  +++++|++++.  ++.....+.+.........          .-.+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~----------~~~~~~~~d~~   70 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDA----------NIYVESDENLR   70 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCC----------EEEEEETTCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCC----------ccccCCcchHH
Confidence            48999996 9999999999999985  99999998643  2222222222111000000          01122345779


Q ss_pred             CcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEE
Q 004918          384 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       384 ~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      ++++||+||.+..              .+.++.+++..++.++++ +.+++
T Consensus        71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv  120 (145)
T d1hyea1          71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV  120 (145)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred             HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence            9999999999852              144466677778888875 45553

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.49  E-value=2.5e-08  Score=89.76  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcC-cccccCccCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-LKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  385 (724)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.-..++.+        ...       .... ...+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~--------~~~-------~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLP-------FMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTT--------SCC-------CTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeecc--------Ccc-------cCCCeeEeeCcHHHh
Confidence            589999999999999999999987  899999999865432211111        100       0011 1224567899


Q ss_pred             CCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEE
Q 004918          386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGA  444 (724)
Q Consensus       386 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~  444 (724)
                      ++||+||.+..              .+..+.+++.+++.++.++. +++..|..  .....+..... .+.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc-eEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            99999999852              13446667777788887554 44433222  22222333333 45678874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=8.1e-08  Score=87.73  Aligned_cols=121  Identities=19%  Similarity=0.290  Sum_probs=76.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .||+|||+|.+|.++|..++..|+  +++++|++++.+..-..++.+..   ...+          ...+..+.++++++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~---~~~~----------~~~~~~~~d~~~~~   86 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGS---LFLS----------TPKIVFGKDYNVSA   86 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTT---TTCS----------CCEEEEESSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcc---hhcC----------CCeEEeccchhhhc
Confidence            589999999999999999999987  89999999987654333333210   0001          01234456789999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCCCH--HHHhcccC-CCCCEEE
Q 004918          387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIG  443 (724)
Q Consensus       387 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig  443 (724)
                      +||+||.+..              .+..+.+++..++.++.+ +.+++..|....+  ..+..... .+.|++|
T Consensus        87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTNPVDILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence            9999998762              134455566666777755 5555544333221  12223333 4456665

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.42  E-value=2.5e-07  Score=83.64  Aligned_cols=123  Identities=20%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      .||+|||+|..|+++|..++..+. +++++|++++.++.....+.+....  .          .....+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~--~----------~~~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM--A----------YSNCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH--H----------TCCCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc--c----------CCCcEEEecccccccCC
Confidence            599999999999999998888876 8999999998766544433332110  0          00123444567899999


Q ss_pred             CCEEEEcccC-------------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HH-HhcccC-CCCCEEEE
Q 004918          388 VDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIGA  444 (724)
Q Consensus       388 aDlVIeav~e-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~-~~~~~~-~~~r~ig~  444 (724)
                      ||+||.+.-.                   +..+.+++..++.++++ +++++..|....+ +. +..... .+.|++|+
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            9999988731                   22355666677888765 5555543333222 22 222223 45677774

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.19  E-value=1.1e-06  Score=83.55  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      +||+|||+|.+|.++|..++ .|++|++||.+++.++......    +..++.+.+          ....++..+++. .
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~----------~~~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLK----------SKQLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHH----------HSCCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhh----------hhhhhhhccchhhh
Confidence            48999999999999998876 6999999999999887754211    011111111          111233334443 5


Q ss_pred             CcCCCCEEEEcccCChH---------HHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          384 EFKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      +..++|+++.|+|.+..         ......+.+... .++.+++. .|+.++.
T Consensus        70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pg  122 (196)
T d1dlja2          70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIG  122 (196)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTT
T ss_pred             hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCce
Confidence            57899999999986332         334444455544 44555543 4444444

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=3.2e-06  Score=78.09  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             ceEEEEcCCCCcHHHHH--HHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      .||+|||+|..|.+.+.  .++..    +.+++++|+++++++.....+.+.......            --++..++|.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~------------~~~i~~~td~   70 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA------------DLKFEKTMNL   70 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTC------------CCEEEEESCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCC------------CeEEEEeCCh
Confidence            49999999999977543  24332    469999999999887655444443322111            1245566776


Q ss_pred             -cCcCCCCEEEEcc
Q 004918          383 -SEFKDVDMVIEAV  395 (724)
Q Consensus       383 -~~~~~aDlVIeav  395 (724)
                       +++++||+||.++
T Consensus        71 ~eaL~dad~Vv~~~   84 (171)
T d1obba1          71 DDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             hhcccCCCeEeeec
Confidence             7899999999875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.11  E-value=2.6e-06  Score=75.90  Aligned_cols=99  Identities=19%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCC--cEEEEeCCH--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCc-ccccCc
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY  382 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~  382 (724)
                      .||+||| +|.+|.++|..++..|.  +++++|++.  +.++.-..++.+...               ..... ..+.++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~---------------~~~~~~i~~~~~   65 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA---------------YDSNTRVRQGGY   65 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT---------------TTCCCEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc---------------ccCCceEeeCCH
Confidence            4899999 69999999999999987  899999753  332221112222110               01111 134577


Q ss_pred             cCcCCCCEEEEccc------C--------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          383 SEFKDVDMVIEAVI------E--------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       383 ~~~~~aDlVIeav~------e--------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      +++++||+||.+.-      +        +..+.+++..++.++.+ +.+++..|
T Consensus        66 ~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvt  119 (142)
T d1o6za1          66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTS  119 (142)
T ss_dssp             GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECC
T ss_pred             HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEec
Confidence            89999999998862      1        35566677777887765 45555443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=9.9e-06  Score=74.19  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             ceEEEEcCCCCcHHHHH--HHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          309 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      .||+|||+|..|.+.+.  .+...    +-+++++|+++++++.....+.......   +         ...++..++|.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~d~   71 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---A---------PDIEFAATTDP   71 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH---C---------TTSEEEEESCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh---C---------CCcceEecCCh
Confidence            58999999999987543  23222    2389999999998775443333321111   1         11245556666


Q ss_pred             -cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          383 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       383 -~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                       +++++||+||.++--                                  +..+.+++.+++.+++ |+++++.-|
T Consensus        72 ~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~T  146 (167)
T d1u8xx1          72 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYS  146 (167)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             hhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence             789999999999731                                  1345667788888887 556665433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.02  E-value=7.1e-06  Score=73.33  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  385 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  385 (724)
                      .||+|||+ |.+|+++|..++..|.  +++++|+++...+. . ++      ... ....     .....+...++++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-Dl------~~~-~~~~-----~~~~~~~~~~~~~~~   66 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-DL------SHI-ETRA-----TVKGYLGPEQLPDCL   66 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-HH------TTS-SSSC-----EEEEEESGGGHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-HH------hhh-hhhc-----CCCeEEcCCChHHHh
Confidence            48999996 9999999999999987  79999998754222 1 11      000 0000     000123333335779


Q ss_pred             CCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 004918          386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  426 (724)
Q Consensus       386 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  426 (724)
                      ++||+||.+..              .+..+.+++.+++.++.+ +++++..|...
T Consensus        67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPv  120 (144)
T d1mlda1          67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPV  120 (144)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCH
T ss_pred             CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCch
Confidence            99999998762              245567777888888854 56665544443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.97  E-value=3.8e-06  Score=78.35  Aligned_cols=109  Identities=12%  Similarity=0.042  Sum_probs=77.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      =++|+|||.|.+|..+|..+...|.+|+.||+++..                  +            ......++ +.++
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~------------~~~~~~~l~ell~   91 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G------------PWRFTNSLEEALR   91 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S------------SSCCBSCSHHHHT
T ss_pred             CceEEEeccccccccceeeeeccccccccccccccc------------------c------------ceeeeechhhhhh
Confidence            368999999999999999999999999999987532                  0            11123344 5689


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEec
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHF  446 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~  446 (724)
                      +||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +....+...+. .+....++..
T Consensus        92 ~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV  154 (181)
T d1qp8a1          92 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV  154 (181)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESC
T ss_pred             ccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEec
Confidence            999999999988776655546677788999998754433  44455555554 3334445553

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.92  E-value=4.2e-06  Score=78.59  Aligned_cols=45  Identities=20%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 004918          309 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA  353 (724)
Q Consensus       309 ~kI~VI-G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~  353 (724)
                      +||+|| |+|.||.+||..|+++||+|++|+|++++++...+.+.+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~   46 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR   46 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            479999 789999999999999999999999999999887766543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.89  E-value=1.9e-05  Score=72.62  Aligned_cols=123  Identities=18%  Similarity=0.176  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCCcHHH--HHHHHHC----CCcEEEEeCCHHHH--HHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          309 RKVAVIGGGLMGSGI--ATAHILN----NIYVVLKEVNSEYL--LKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       309 ~kI~VIG~G~mG~~i--A~~la~~----G~~V~l~d~~~~~~--~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      .||+|||+|..|.+.  +..+...    +-+++++|++++..  +...........   ..+         ..-++..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~---~~~---------~~~~~~~~t   69 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAG---------VPIEIHLTL   69 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTT---------CCCEEEEES
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHH---hcC---------CCceeeecC
Confidence            489999999988643  3333332    23899999988652  221111111111   111         012344566


Q ss_pred             Cc-cCcCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          381 DY-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       381 ~~-~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      |. +++++||+||.++.-                                  +..+.+++.+++.+++ |+++++..|..
T Consensus        70 d~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNP  148 (169)
T d1s6ya1          70 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP  148 (169)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred             CchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCCh
Confidence            65 778999999999841                                  2344577888899886 55665543333


Q ss_pred             CCH-HHHhcccCCCCCEEEE
Q 004918          426 IDL-NIVGEKTSSQDRIIGA  444 (724)
Q Consensus       426 ~~~-~~~~~~~~~~~r~ig~  444 (724)
                      ..+ +........+.|++|+
T Consensus       149 vdv~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         149 AGMVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHHCCCCCEEee
Confidence            222 2322233345678775

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=4e-05  Score=69.89  Aligned_cols=73  Identities=19%  Similarity=0.104  Sum_probs=48.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH--C----CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccC-
Q 004918          309 RKVAVIGGGLMGSGIATAHIL--N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-  381 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~--~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-  381 (724)
                      .||+|||+|..|.+.+.....  .    +.+++++|+++++++...+ +.+.   .....           ..+..+++ 
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~~---~~~~~-----------~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKR---LVKDR-----------FKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHH---HHTTS-----------SEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHHh---hhccC-----------ceEEEecCc
Confidence            489999999999888855332  2    3589999999998764332 2211   11111           12333444 


Q ss_pred             ccCcCCCCEEEEccc
Q 004918          382 YSEFKDVDMVIEAVI  396 (724)
Q Consensus       382 ~~~~~~aDlVIeav~  396 (724)
                      ++++++||+||.+.-
T Consensus        66 ~~~l~~aDvVVita~   80 (162)
T d1up7a1          66 EGAVVDAKYVIFQFR   80 (162)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             ccccCCCCEEEEecc
Confidence            478999999999873

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=3.2e-06  Score=75.75  Aligned_cols=102  Identities=17%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHH-C--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIG-GGLMGSGIATAHIL-N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~-~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      .||+||| +|.+|+++|..++. .  +.++.++|+++.....+. .+.+.       ...      .....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~-Dl~h~-------~~~------~~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV-DLSHI-------PTA------VKIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH-HHHTS-------CSS------CEEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH-HHHCC-------ccc------cCCcEEEcCCCccc
Confidence            4899999 59999999998864 3  469999999764322211 11110       000      00112334556788


Q ss_pred             cCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       385 ~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +++||+||.+.-              .+..+.+++.+++.++.++. +++..|..
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~a-ivivvtNP  120 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKA-CIGIITNP  120 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECSSS
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCc-EEEEccCC
Confidence            999999998872              14556777778888887555 44444433

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=5.6e-05  Score=70.05  Aligned_cols=132  Identities=16%  Similarity=0.187  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           28 LAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      +|.++..++...|..++.+   +.+.+. |.+.      |+|+..                +..++ +.|..++.|+...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~------GG~v~~----------------gl~i~-d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDISLY-INSP------GGSISA----------------GMAIY-DTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEEC------CBCHHH----------------HHHHH-HHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEEEE-eeCC------CCCHHH----------------HHHHH-HHHHhhccceeee
Confidence            7888888888877555432   334333 3443      344321                12445 6688899999999


Q ss_pred             ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhhh------------------ccc--ccHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRL--VGLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~l------------------~r~--~G~~~a~~l  162 (724)
                      +.|.|.+.|.-+.+++|  .|++.++++|-+-+...|..   |...-+                  .+.  .......++
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~---G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~  154 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVT---GSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD  154 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            99999999999999999  89999999999888765542   211111                  111  133455566


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-....++|+||+++||||+|+.+
T Consensus       155 ~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         155 SDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            677888999999999999999864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.65  E-value=9.7e-06  Score=76.45  Aligned_cols=100  Identities=17%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+.......             ..             .. ...++ +.++.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~-------------~~-~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KK-------------GY-YVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HT-------------TC-BCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cc-------------ee-eeccccccccc
Confidence            68999999999999999999999999999977543111             00             01 12334 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-C--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+.+.-+=++....++++++|+ |+| +  +....+...+.
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~  147 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGLD  147 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHHh
Confidence            999999999877766555466667789998886 444 3  33445555443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.64  E-value=2e-05  Score=72.81  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=37.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      +||.|||+|.||..+|..|+++||+|+++||+.++++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            789999999999999999999999999999999987764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.63  E-value=3e-05  Score=68.21  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc--cCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  386 (724)
                      |++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.+           .+..      ...+...-...+  ..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-----------~~~~------~~~gd~~~~~~l~~a~i~   63 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YATH------AVIANATEENELLSLGIR   63 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-----------TCSE------EEECCTTCTTHHHHHTGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-----------hCCc------ceeeecccchhhhccCCc
Confidence            57899999999999999999999999999999999877431           1110      000000000011  2368


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      +||.||.+++++..... +...+.+..+...+++
T Consensus        64 ~a~~vi~~~~~~~~~~~-~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          64 NFEYVIVAIGANIQAST-LTTLLLKELDIPNIWV   96 (134)
T ss_dssp             GCSEEEECCCSCHHHHH-HHHHHHHHTTCSEEEE
T ss_pred             cccEEEEEcCchHHhHH-HHHHHHHHcCCCcEEe
Confidence            89999999987755432 2233444445455554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.61  E-value=0.00013  Score=63.80  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.++.    ...+=.|-.+ .+..           ....+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l-----------~~~~i~~   65 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTL-----------EDAGIED   65 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHH-----------HHTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhh-----------hhcChhh
Confidence            4899999999999999999999999999999999887754311    0000001110 0000           0034688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +|.++.+.+++. .. -+...+.+...+..+|+.
T Consensus        66 a~~vv~~t~~d~-~N-~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          66 ADMYIAVTGKEE-VN-LMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             CSEEEECCSCHH-HH-HHHHHHHHHTTCCCEEEE
T ss_pred             hhhhcccCCcHH-HH-HHHHHHHHHcCCceEEEE
Confidence            999998877542 22 233334445556666653

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=4.3e-05  Score=71.20  Aligned_cols=132  Identities=14%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           28 LAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      ++.++...+...+..++.++   .+. |.|.+.      |+|+.                ....++ +.|..++.|+...
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~----------------~g~~i~-d~i~~~~~~v~tv   80 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSP------GGVIT----------------AGMSIY-DTMQFIKPDVSTI   80 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCC------CccHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence            78888888888888776433   333 333444      34432                122455 6688999999999


Q ss_pred             ECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhhhc------------------cc--ccHHHHHHH
Q 004918          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRLP------------------RL--VGLSKAIEM  162 (724)
Q Consensus       105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~l~------------------r~--~G~~~a~~l  162 (724)
                      +.|.|.+.|.-+.++||  .|++.++++|-+-+...|..   |-..-+.                  +.  .......++
T Consensus        81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~  157 (183)
T d1yg6a1          81 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  157 (183)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999998  79999999998877765542   2211110                  01  123344444


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-.-..++|+||+++|+||+|+..
T Consensus       158 ~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         158 TERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hccCccccHHHHHHcCCCcEEecc
Confidence            445556799999999999999864

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.55  E-value=1.2e-05  Score=75.60  Aligned_cols=103  Identities=14%  Similarity=0.046  Sum_probs=72.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||+|.+|..+|..+..-|.+|..||+....-...            .             ..+...+++ +.++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------A-------------LGLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------H-------------HTCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------h-------------hccccccchhhcccc
Confidence            689999999999999999999999999999865421110            0             012223455 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+.+.-+=++....++++++++..+-+  +....+...+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  155 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence            99999999977776655545667788999988643333  33445555553

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.53  E-value=0.00022  Score=66.70  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (724)
                      .++.++...+...+..++.++   ++. +.|.+.|      +|+..                +..++ +.|..++.|+..
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G------G~v~~----------------glai~-d~i~~~~~~v~t   87 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG------GSVSA----------------GLAIV-DTMNFIKADVQT   87 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEE
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC------CCHHH----------------HHHHH-HHHHhcCcceEE
Confidence            378888888888887665332   343 3335544      33221                22455 668889999999


Q ss_pred             EECccccchhHHHHhh--cCEEEEeCCceeeCcccccCccCCcchhh------hhcc-----------c--ccHHHHHHH
Q 004918          104 AVEGLALGGGLELAMG--CHARIAAPKTQLGLPELTLGVIPGFGGTQ------RLPR-----------L--VGLSKAIEM  162 (724)
Q Consensus       104 av~G~a~GgG~~lala--cD~ria~~~a~f~~pe~~~G~~P~~g~~~------~l~r-----------~--~G~~~a~~l  162 (724)
                      .+.|.|.+.|.-|.+|  ||.|++.++++|-+-....|.........      .+-+           .  ....+..+.
T Consensus        88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~  167 (192)
T d1y7oa1          88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  167 (192)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            9999999999888776  68999999999999888776532111110      0100           0  133455566


Q ss_pred             HHcCCCCCHHHHHHCCCcceecCc
Q 004918          163 MLLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       163 ~ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      +-....++|+||+++||||+|+..
T Consensus       168 ~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         168 AERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            667788999999999999999853

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.43  E-value=2.7e-05  Score=72.95  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=73.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -++|+|||.|.+|..+|..+...|.+|..||+....-....           .             ..+....++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~-------------~~~~~~~~l~~~l~   99 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------E-------------LNLTWHATREDMYP   99 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------H-------------HTCEECSSHHHHGG
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------c-------------ccccccCCHHHHHH
Confidence            36899999999999999999999999999998643211100           0             012223344 5689


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-C--CCHHHHhcccC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  436 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~~~~~~~~~~  436 (724)
                      +||+|+.++|-+.+.+.-+=++..+.++++++|+ |++ +  +....+...+.
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~  151 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALE  151 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHh
Confidence            9999999999877766555567778889999886 444 3  44455655554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.42  E-value=4.9e-05  Score=71.17  Aligned_cols=115  Identities=12%  Similarity=0.045  Sum_probs=77.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -++|+|||.|.+|..+|..+...|.+|..||+..........                        .......++ +.++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHh
Confidence            378999999999999999999999999999986543221100                        011122344 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCC-C--CCHHHHhcccC-CCCCEEEEecC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS-SQDRIIGAHFF  447 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~~~~~~~~~~-~~~r~ig~h~~  447 (724)
                      .||+|+.++|-+.+.+.-+=++..+.++++++|+ |++ +  +.-..+.+.+. ..-...++..|
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~  166 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVF  166 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence            9999999999887766555566777899999886 454 3  33345555443 22233444433

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.40  E-value=8.2e-05  Score=68.47  Aligned_cols=105  Identities=11%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (724)
                      .-||+|+|+ |.+|.+++..|++...       ++.++|++...-.  .+.+.-.+.    ....      .....+..+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~--l~g~~mdl~----d~a~------~~~~~~~~~   91 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA--LEGVAMELE----DSLY------PLLREVSIG   91 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH--HHHHHHHHH----TTTC------TTEEEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch--hcchhhhhc----cccc------ccccCcccc
Confidence            358999996 9999999999998642       6777787664311  111111111    0000      011233334


Q ss_pred             c-CccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          380 L-DYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       380 ~-~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      + ++++++++|+||....              .+..+.+++.+.+.++++++++|+..+.
T Consensus        92 ~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N  151 (175)
T d7mdha1          92 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  151 (175)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            4 4588999999998762              2345667777889999988886654443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.38  E-value=1.4e-05  Score=75.67  Aligned_cols=100  Identities=15%  Similarity=0.061  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+.+.....                           .... ..++ +.++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~-~~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFD-YVSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCE-ECCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchh-HHHHHHHHHh
Confidence            68999999999999999999999999999986542000                           0111 1233 45688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      ||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +.-..+...+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence            99999999988876654446666778999988643333  33345555553

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.38  E-value=5.4e-05  Score=68.72  Aligned_cols=94  Identities=15%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      -++|.|||+|.||..++.+|...|. +|++++|+.++++...+.+          +           ......+++ +.+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHh
Confidence            4789999999999999999999998 6999999998876643321          0           011111222 567


Q ss_pred             CCCCEEEEcccCCh-HHHHHHHHHHHhhCC--CCcEEEec
Q 004918          386 KDVDMVIEAVIESV-PLKQKIFSELEKACP--PHCILATN  422 (724)
Q Consensus       386 ~~aDlVIeav~e~~-~~k~~v~~~l~~~~~--~~~ii~s~  422 (724)
                      .++|+||.|++.+. -+.++.++.....-+  ...+|++-
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl  122 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI  122 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence            89999999996432 344566655443322  23355553

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00011  Score=65.97  Aligned_cols=97  Identities=14%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      |+|+|+|.|.+|.++|..+...|.+|+++|++|-..-++.           -             +-....+-.+++..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-----------~-------------dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-----------M-------------EGYEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------H-------------TTCEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-----------c-------------CceEeeehhhhhhhc
Confidence            6899999999999999999999999999999996533221           1             112222222678899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHhc
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGE  433 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~  433 (724)
                      |+||.+....--+.    .+..+.+++++|+++.++.   +.+..+.+
T Consensus        81 divvtaTGn~~vI~----~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          81 NIFVTTTGCIDIIL----GRHFEQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             SEEEECSSCSCSBC----HHHHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             cEEEecCCCccchh----HHHHHhccCCeEEEEeccccceecHHHHhh
Confidence            99998875422233    3344668899998764432   44444543

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.35  E-value=0.001  Score=61.86  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           28 LAIPIVAGLKDKFEEATSR--DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        28 l~~~~~~~l~~~l~~~~~d--~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      +|.++..++...+..+++.  .++... |.+.      |+|+..                +..++ +.|..++.|+...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~l~-INS~------GG~v~~----------------g~ai~-d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIKIY-INSP------GGSINE----------------GLAIL-DIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEEEE-EEEC------CBCHHH----------------HHHHH-HHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeEEE-EeCc------hhhhhH----------------HHHHH-HHHHhhCCceEEEE
Confidence            7888888888888777542  334333 3433      344321                22455 66888999999999


Q ss_pred             CccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhhh------------------cccc--cHHHHHHHH
Q 004918          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLV--GLSKAIEMM  163 (724)
Q Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~l------------------~r~~--G~~~a~~l~  163 (724)
                      .|.|.+.|.-+++++|  .|++.++++|-+.....|..   |...-+                  .+.-  ......+++
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~  159 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS  159 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence            9999999999999988  69999999999998877653   222111                  1111  222344445


Q ss_pred             HcCCCCCHHHHHHCCCcceecCc
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTS  186 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~  186 (724)
                      -.-..++|+||+++||||+|+..
T Consensus       160 ~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         160 DRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HTTCEECHHHHHHHTSCSEECCC
T ss_pred             cCCeeecHHHHHHcCCCcEEccc
Confidence            55667899999999999999853

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.31  E-value=9e-05  Score=66.86  Aligned_cols=100  Identities=17%  Similarity=0.117  Sum_probs=61.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccccc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  380 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  380 (724)
                      .||+|||+ |.+|.++|..|++.+.       +++++|.++..... . .+.-.+    .....      .....+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~-~l~~~~----~~~~~------~~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-D-GVLMEL----QDCAL------PLLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-H-HHHHHH----HHTCC------TTEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-h-hhhhhh----ccccc------ccccccccCc
Confidence            38999996 9999999999987643       57888876543221 1 110000    00000      0112233333


Q ss_pred             C-ccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEE
Q 004918          381 D-YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       381 ~-~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      + +++++++|+||.+..              .+..+.+++..++.++++.+.+++
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~ii  126 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI  126 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEE
Confidence            3 478999999998762              124566777778888888877443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=4.2e-05  Score=71.25  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=72.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -++|+|||.|.+|..+|..+..-|.+|+.||+.........                         ..+. ..++ +.++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-------------------------~~~~-~~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-------------------------LGIE-LLSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-------------------------HTCE-ECCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-------------------------cCce-eccHHHHHh
Confidence            36899999999999999999999999999998765422210                         0111 1233 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  436 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~  436 (724)
                      .||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +.-..+...+.
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~  149 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT  149 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHh
Confidence            999999999988776654446677788999988643333  34445555554

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.25  E-value=0.00024  Score=63.85  Aligned_cols=86  Identities=22%  Similarity=0.217  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||.|.-|.+-|.+|...|.+|++--|.... .+++.           +.|             ....+-.|+++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~~G-------------f~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------hhc-------------cccccHHHHhhh
Confidence            68999999999999999999999999987765432 22221           222             232333377899


Q ss_pred             CCEEEEcccCChHHHHHHHH-HHHhhCCCCcEEE
Q 004918          388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILA  420 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~ii~  420 (724)
                      +|+|...+|  .+.-.++|+ ++.+.++++..+.
T Consensus        73 aDiim~L~P--D~~q~~vy~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          73 ADVVMILTP--DEFQGRLYKEEIEPNLKKGATLA  104 (182)
T ss_dssp             CSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEE
T ss_pred             cCeeeeecc--hHHHHHHHHHhhhhhcCCCcEEE
Confidence            999999999  666678896 6999999998875

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.24  E-value=0.00049  Score=64.18  Aligned_cols=132  Identities=14%  Similarity=0.212  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004918           27 ALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  103 (724)
                      -++.++...+...+..+++.   .++...+ .+.|+      |+.                .+..++ +.|..++.||..
T Consensus        34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l~I-nS~GG------~v~----------------~g~~i~-d~i~~~~~~V~t   89 (193)
T d1tg6a1          34 PIDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGG------VVT----------------AGLAIY-DTMQYILNPICT   89 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCB------CHH----------------HHHHHH-HHHHHSCSCEEE
T ss_pred             EEchHHHHHHHHHHHHhcccCCCcEEEEEe-ecCcc------cHH----------------HHHHHH-HHHHhhcCceEE
Confidence            47888888888777666533   2454443 55443      221                122455 668889999999


Q ss_pred             EECccccchhHHHHhhcC--EEEEeCCceeeCcccccCccCCcchhhhh------------------ccc--ccHHHHHH
Q 004918          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRL--VGLSKAIE  161 (724)
Q Consensus       104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~P~~g~~~~l------------------~r~--~G~~~a~~  161 (724)
                      .+.|.|.+.|.-+.+++|  .|++.++|+|-+-+...|..   |-..-+                  ...  .......+
T Consensus        90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~---G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~  166 (193)
T d1tg6a1          90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES  166 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999999999  59999999999988876652   211111                  000  12344445


Q ss_pred             HHHcCCCCCHHHHHHCCCcceecC
Q 004918          162 MMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       162 l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      ++-.-..++|+||+++||||+|+.
T Consensus       167 ~~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         167 AMERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHSSCEEECHHHHHHHTSCSEECS
T ss_pred             HhccCccCCHHHHHHcCCCCEEcc
Confidence            555556689999999999999983

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=4.8e-05  Score=71.15  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcC
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  386 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  386 (724)
                      -++|+|||.|.+|..+|..+...|.+|+.||+......                            .......++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            37899999999999999999999999999998653210                            011112334 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHhcccC-CCCCEEEEe
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAH  445 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h  445 (724)
                      .||+|+.++|-+.+.+.-+=++..+.++++++|+..+-+  +...++...+. ......++.
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lD  157 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAID  157 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEE
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEe
Confidence            999999999988776655556777788999988743333  44455656554 233334444

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.20  E-value=0.00031  Score=65.38  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC------CcEEEEeCCH-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNN------IYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  379 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G------~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  379 (724)
                      .++||+|||.|.-|.+-|.+|...|      ..|++-=|.. ...+++.           +.|...        ......
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~  103 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLG  103 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEE
T ss_pred             CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCccc
Confidence            4689999999999999999999955      4565543322 2223221           222100        001111


Q ss_pred             cCccCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       380 ~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +-.|+++.+|+|+..+|  .+.-.++|+++.++++++..+.-
T Consensus       104 ~v~EAv~~ADiVmiLlP--De~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         104 DMWETISGSDLVLLLIS--DSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             EHHHHHHTCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CHHHHHhhCCEEEEecc--hHHHHHHHHHHHHhcCCCceeee
Confidence            22267899999999999  66667899999999999998753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00015  Score=65.29  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-------cEEEEeC--CHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  378 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  378 (724)
                      .||+|||+ |.+|..+|..|+..++       ...+++.  +.+.++.....+.       ... .      .....+..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~-~------~~~~~~~~   70 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELE-------DCA-F------PLLAGLEA   70 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH-------TTT-C------TTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhh-------ccc-c------cccccccc
Confidence            38999997 9999999999998754       1233333  3333332211110       000 0      01122333


Q ss_pred             c-cCccCcCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCcEEEecCC
Q 004918          379 V-LDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  424 (724)
Q Consensus       379 ~-~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  424 (724)
                      + .+++++++||+||.+.-              .+..+.+++..++.++++++++++..|.
T Consensus        71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            3 34578999999998761              1345666777788888888886654443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=7.6e-05  Score=70.68  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=35.8

Q ss_pred             CCcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       306 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      |.|+||.|+|+ |.+|+.++..|+++||+|++++|+++++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            46899999995 9999999999999999999999998864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.93  E-value=0.00043  Score=61.74  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      +++.|+|.|..|.++|..+...|..|++++++|-.+-++                        .++-....+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            689999999999999999999999999999999653322                        11222323333778999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      |++|.+.....-+.    .+....+++++|++...
T Consensus        80 Di~vTaTGn~~vI~----~~h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          80 DFFITCTGNVDVIK----LEHLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SEEEECCSSSSSBC----HHHHTTCCTTCEEEECS
T ss_pred             cEEEEcCCCCcccc----HHHHHHhhCCeEEEecc
Confidence            99999987543233    33445678999886543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.91  E-value=0.00037  Score=62.75  Aligned_cols=96  Identities=18%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  387 (724)
                      .||.|||+|.-|..-+......|-+|+++|.+++++++....    +...++.-..+++             .+ +.+++
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~~~~~~~~~~~~~-------------~l~~~~~~   95 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----FGSRVELLYSNSA-------------EIETAVAE   95 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----HGGGSEEEECCHH-------------HHHHHHHT
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----hcccceeehhhhh-------------hHHHhhcc
Confidence            589999999999999999999999999999999988765332    1111111101111             11 56789


Q ss_pred             CCEEEEccc--CChHHHHHHHHHHHhhCCCCcEEEec
Q 004918          388 VDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATN  422 (724)
Q Consensus       388 aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~ii~s~  422 (724)
                      ||+||-++-  .... -+-+-++..+.++++.+|++.
T Consensus        96 aDivI~aalipG~~a-P~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1          96 ADLLIGAVLVPGRRA-PILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             CSEEEECCCCTTSSC-CCCBCHHHHTTSCTTCEEEET
T ss_pred             CcEEEEeeecCCccc-CeeecHHHHhhcCCCcEEEEe
Confidence            999999982  1110 001123455668999999863

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0019  Score=64.34  Aligned_cols=136  Identities=14%  Similarity=0.032  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEEC
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~  106 (724)
                      +++++-.+.-...++.++.- .+-+|-|-=.++++ .|.+-++.          -......+.+ ..+..+.+|+|+.|-
T Consensus       131 ~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG~~-~g~~~E~~----------g~~~~~a~~~-~~~~~~~vP~i~vv~  197 (316)
T d2f9ya1         131 MPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAY-PGVGAEER----------GQSEAIARNL-REMSRLGVPVVCTVI  197 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSC-CSHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEEE
T ss_pred             cccHHHHHHHHHHHHHHHHc-CcceEEEEecCccc-CCcccccc----------cHHHHHHHHH-HHHHhCCCceEEEEE
Confidence            67888888888888887764 45566554333333 33332221          1223344555 568899999999999


Q ss_pred             ccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Q 004918          107 GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  185 (724)
Q Consensus       107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~  185 (724)
                      |-+.|||.-....+|.++|.++|.|+.      +.|.++.+..+...--...|.+.    ..+++++.+++|+||+|+|
T Consensus       198 g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII~  266 (316)
T d2f9ya1         198 GEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  266 (316)
T ss_dssp             EEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             hhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhccc
Confidence            999999998888999999999999983      35666666655443333333333    3589999999999999995

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.75  E-value=0.00092  Score=60.80  Aligned_cols=40  Identities=20%  Similarity=0.084  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      +||.|||+|-++.+++..|.+.|. +|++++|++++.+...
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~   58 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA   58 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHH
Confidence            689999999999999999999997 8999999999876643

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.017  Score=55.51  Aligned_cols=148  Identities=12%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004918           16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (724)
Q Consensus        16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (724)
                      +.|.-+.+.  --+++....+.+..+.+.+... .+-+|.|..     |.|+.+.+-...     ...+.+ ..... . 
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~-~~P~I~~~d-----sgG~r~~e~~~~-----l~~~~~-~~~~~-~-  153 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGIND-----SGGARIQEGVDA-----LAGYGE-IFLRN-T-  153 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHH-HHHHH-H-
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCccccccccc-----cccchH-HHHHH-H-
Confidence            334444553  3688888888898888887765 345565543     234444321110     001111 11111 2 


Q ss_pred             HhcCCCcEEEEECccccchhHHHHhhcCEEEEeCC-ceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHH
Q 004918           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE  172 (724)
Q Consensus        94 l~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  172 (724)
                      ...-..|+|+++.|+|.||+......||++|+.+. +.+++.          |     |+.      .+ ..+|+.++.+
T Consensus       154 ~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a----------G-----p~v------v~-~~~ge~~~~e  211 (251)
T d1vrga1         154 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT----------G-----PNV------IK-AVTGEEISQE  211 (251)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS----------C-----HHH------HH-HHHCCCCCHH
T ss_pred             HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec----------C-----chh------hh-hhcCCcCChH
Confidence            33457999999999999999999999999998754 433211          1     122      11 2577889988


Q ss_pred             HH-------HHCCCcceecCcchHHHHHHHHHHHHHc
Q 004918          173 EG-------WKLGLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       173 eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                      +.       ...|++|.+++.+   +.+.+.++++.+
T Consensus       212 elGga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs  245 (251)
T d1vrga1         212 DLGGAMVHNQKSGNAHFLADND---EKAMSLVRTLLS  245 (251)
T ss_dssp             HHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHT
T ss_pred             HccchhhhhhccccceEEECCH---HHHHHHHHHHHH
Confidence            75       4679999999765   344555555543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0011  Score=60.47  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=37.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|+|+|-.+.+++..|.+.|.+|++++|+.++.+...+
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~   59 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHH
Confidence            68999999999999999999999999999999998776543

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.69  E-value=0.0062  Score=59.93  Aligned_cols=164  Identities=15%  Similarity=0.075  Sum_probs=91.9

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.-|.+.  --++++...+.+..+++.+... .+-+|.|.-.     .|+.+.+-....  .......+.. ..+ ..+.
T Consensus       108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~ds-----~Ga~~~~~~e~~--~~~~~~g~~~-~~~-a~ls  177 (287)
T d1pixa2         108 VVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNC-----SGVKFDEQEKVY--PNRRGGGTPF-FRN-AELN  177 (287)
T ss_dssp             EEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECC-----CEECGGGHHHHS--SSTTSTTHHH-HHH-HHHH
T ss_pred             EEEeccccccccchhhHHHHHHHHHHhhhhc-CCCEEEEecC-----CcccCCcchhhc--cchhhHHHHH-HHH-HHHh
Confidence            3335553  3588888888888888877765 3556666432     333443211110  0011111112 112 2356


Q ss_pred             cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcc--cccCccCCcchhhhhcccccHHHHHHH-HHcCCCC---
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE--LTLGVIPGFGGTQRLPRLVGLSKAIEM-MLLSKSI---  169 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe--~~~G~~P~~g~~~~l~r~~G~~~a~~l-~ltg~~i---  169 (724)
                      ...+|+|++|.|.|.|||.-.+++||++++.+++.+.+.-  +--+..+..+        +....+.++ ..+|+.+   
T Consensus       178 ~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~--------~~~~~~~ei~~~~ge~~~~e  249 (287)
T d1pixa2         178 QLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGH--------VDLEYANEIADMVDRTGKTE  249 (287)
T ss_dssp             HTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSS--------CCHHHHHHHHHHHHTTCCCC
T ss_pred             hcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhh--------hhhhhHHHHHhhhccccccc
Confidence            6789999999999999998888888888888888876632  2222222211        111222222 1334444   


Q ss_pred             --CHHH--HHHCCCcceecCcchHHHHHHHHHHHHHc
Q 004918          170 --TSEE--GWKLGLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       170 --~a~e--A~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                        .+.+  +...|++|.|++.++   ++.+.++++..
T Consensus       250 eLGGa~~H~~~sG~~d~v~~~e~---~ai~~~r~~ls  283 (287)
T d1pixa2         250 PPGAVDIHYTETGFMREVYASEE---GVLEGIKKYVG  283 (287)
T ss_dssp             CSSBHHHHTTTSCCSCEEESSHH---HHHHHHHHHHH
T ss_pred             ccccHHHhhhhcccceeecCCHH---HHHHHHHHHHh
Confidence              4443  345799999997653   55555555443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.0022  Score=52.26  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.0

Q ss_pred             CCcceEEEEcCCCCc-HHHHHHHHHCCCcEEEEeCCHH
Q 004918          306 RGVRKVAVIGGGLMG-SGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG-~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ..++||-|||.|-+| +++|..|.+.|++|.++|+...
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457899999999999 7779999999999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.00096  Score=60.91  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCccCcCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~~  387 (724)
                      ++|.|+|+|.++.+++..|.+.+.+|++++|+.++++...+.+.       ..+            .+... .+...+.+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence            68999999999999999999988899999999988777544321       111            11111 12234678


Q ss_pred             CCEEEEcccC
Q 004918          388 VDMVIEAVIE  397 (724)
Q Consensus       388 aDlVIeav~e  397 (724)
                      +|+||.|+|-
T Consensus        80 ~diiIN~tp~   89 (171)
T d1p77a1          80 YDLVINATSA   89 (171)
T ss_dssp             CSEEEECCCC
T ss_pred             cceeeecccc
Confidence            9999999983

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.005  Score=52.95  Aligned_cols=79  Identities=24%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      .||+|+|+ |.||..++..+.+.|++++.. |.+                                        ..+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhc
Confidence            37999996 999999999999999987642 322                                        114567


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                      ++|+||+-..  ++...+.++...+   .+..+++.|++++-+++.
T Consensus        41 ~~DVvIDFS~--p~~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~   81 (128)
T d1vm6a3          41 SPDVVIDFSS--PEALPKTVDLCKK---YRAGLVLGTTALKEEHLQ   81 (128)
T ss_dssp             CCSEEEECSC--GGGHHHHHHHHHH---HTCEEEECCCSCCHHHHH
T ss_pred             cCCEEEEecC--HHHHHHHHHHHHh---cCCCEEEEcCCCCHHHHH
Confidence            8999998765  5655566555443   345567788888766544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.42  E-value=0.0078  Score=54.21  Aligned_cols=77  Identities=21%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c
Q 004918          309 RKVAVIGGGLMGSG-IATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  385 (724)
                      -||+|||+|.||.. ....+.+. +.+++++|++++.++...+..                      +.....+++++ +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY----------------------RVSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT----------------------TCCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc----------------------ccccccccHHHhc
Confidence            38999999999976 45556554 568889999998877643211                      11122344433 3


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHH
Q 004918          386 -KDVDMVIEAVIESVPLKQKIFSEL  409 (724)
Q Consensus       386 -~~aDlVIeav~e~~~~k~~v~~~l  409 (724)
                       .+.|+|+.|+|.+..  .++....
T Consensus        60 ~~~iD~V~I~tp~~~H--~~~~~~a   82 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVH--STLAAFF   82 (167)
T ss_dssp             GGCCSEEEECSCGGGH--HHHHHHH
T ss_pred             ccccceeccccccccc--ccccccc
Confidence             368999999984433  3444443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.36  E-value=0.0019  Score=59.14  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|.|||+|.++.+++..|.+.| +|++++|+.++++...+.+.........             ..+....-.....++
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~   84 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFG-------------EEVKFSGLDVDLDGV   84 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHH-------------HHEEEECTTCCCTTC
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhh-------------hhhhhhhhhhccchh
Confidence            68999999999999999998777 9999999999988876655433211100             011111111346778


Q ss_pred             CEEEEccc
Q 004918          389 DMVIEAVI  396 (724)
Q Consensus       389 DlVIeav~  396 (724)
                      |+||.|.|
T Consensus        85 dliIn~tp   92 (177)
T d1nvta1          85 DIIINATP   92 (177)
T ss_dssp             CEEEECSC
T ss_pred             hhhccCCc
Confidence            99999887

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.33  E-value=0.014  Score=56.42  Aligned_cols=139  Identities=15%  Similarity=0.074  Sum_probs=85.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      .-+++....+.+..+.+.+..+. +-+|.|.-     |+|+.+.+-...     ...+.. .....  ....-..|+|++
T Consensus       102 gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~~-----~~~~~~-~~~~~--~~~~~~vP~I~~  167 (258)
T d2a7sa1         102 GGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVVS-----LGLYSR-IFRNN--ILASGVIPQISL  167 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTHH-----HHHHHH-HHHHH--HHHTTTSCEEEE
T ss_pred             CCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCccccccccc-----ccchhh-HHHHH--HHHcCCCCEEEE
Confidence            36888999999999998887653 55666642     233444321100     000111 11111  234567999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeC-CceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------HH
Q 004918          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~~  176 (724)
                      +.|+|.||+......||++|+.+ .+.+++.                    |+....  ..+|+.++.+|.       .+
T Consensus       168 v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~--~~~ge~~~~eeLGga~~h~~~  225 (258)
T d2a7sa1         168 IMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK--TVTGEEVTMEELGGAHTHMAK  225 (258)
T ss_dssp             ECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHH--HhcCCccChhhccCHhHhhhh
Confidence            99999999999999999999874 4444321                    222121  247888888764       46


Q ss_pred             CCCcceecCcchHHHHHHHHHHHHHc
Q 004918          177 LGLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                      .|++|.+++.+   +.+.+.++++.+
T Consensus       226 sG~~D~v~~de---~~a~~~~r~~Ls  248 (258)
T d2a7sa1         226 SGTAHYAASGE---QDAFDYVRELLS  248 (258)
T ss_dssp             SCCCSEEESSH---HHHHHHHHHHHH
T ss_pred             ccccceEeCCH---HHHHHHHHHHHH
Confidence            79999999754   244444444433

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.32  E-value=0.017  Score=55.57  Aligned_cols=139  Identities=16%  Similarity=0.130  Sum_probs=86.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      --+++....+.+..+.+.+..+. +-+|.+.-     |.|+.+.+-...     ...+.... ..+ ..+. -.+|+|++
T Consensus       102 GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~~~-----l~~~~~~~-~~~-~~ls-~~vP~i~v  167 (253)
T d1on3a1         102 GGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGIDS-----LSGYGKMF-FAN-VKLS-GVVPQIAI  167 (253)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HHH-HHHT-TTSCEEEE
T ss_pred             cccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCccccccee-----ccccceeh-HHH-HHHh-ccceEEEE
Confidence            37889999999999998887653 45566542     233434321100     00111111 112 2233 35899999


Q ss_pred             ECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------HHC
Q 004918          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKL  177 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~~~  177 (724)
                      +.|+|+||+.....+||++|+.+++.+++.-               |+.+      + ..+|+.++.+|.       ...
T Consensus       168 v~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG---------------P~vV------e-~~~ge~~~~eelGga~~h~~~s  225 (253)
T d1on3a1         168 IAGPCAGGASYSPALTDFIIMTKKAHMFITG---------------PQVI------K-SVTGEDVTADELGGAEAHMAIS  225 (253)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESSC---------------HHHH------H-HHHCCCCCHHHHHSHHHHHHTT
T ss_pred             EecCcccceeeccchhhheeccccceEEecC---------------cchh------h-hhhCCcCChHhccCHHHhhhcc
Confidence            9999999999999999999999887776421               1111      1 134677776533       457


Q ss_pred             CCcceecCcchHHHHHHHHHHHHHc
Q 004918          178 GLIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       178 Glv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                      |.||.|++.++   .+.++++++.+
T Consensus       226 G~iD~v~~~e~---~a~~~~r~lls  247 (253)
T d1on3a1         226 GNIHFVAEDDD---AAELIAKKLLS  247 (253)
T ss_dssp             CCCSEEESSHH---HHHHHHHHHHH
T ss_pred             ccceEEECCHH---HHHHHHHHHHH
Confidence            99999998765   45556655543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0026  Score=56.19  Aligned_cols=99  Identities=15%  Similarity=0.236  Sum_probs=60.0

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CC---cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  382 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  382 (724)
                      |+||||||+ |..|.-+...|..+ .+   +++.+..+...-..            +..+        ..........+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~------------~~~~--------~~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA------------PSFG--------GTTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------------CGGG--------TCCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc------------cccc--------CCceeeecccch
Confidence            579999999 99999999877665 33   46666554321000            0000        000001112233


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      +.++++|++|.|+|  .+..+++..++.+. ..++++++++|.....
T Consensus        61 ~~~~~~DivF~a~~--~~~s~~~~~~~~~~-g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          61 EALKALDIIVTCQG--GDYTNEIYPKLRES-GWQGYWIDAASSLRMK  104 (146)
T ss_dssp             HHHHTCSEEEECSC--HHHHHHHHHHHHHT-TCCCEEEECSSTTTTC
T ss_pred             hhhhcCcEEEEecC--chHHHHhhHHHHhc-CCCeecccCCcccccC
Confidence            46789999999998  66666666665542 3446788999887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.28  E-value=0.0023  Score=59.38  Aligned_cols=44  Identities=18%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             ceEEEEc-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      ++|.|.| .|.+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            6788888 5999999999999999999999999999887766554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.25  E-value=0.0013  Score=63.33  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +-+||+|||+|.+|.+.|..|+++|++|+++|++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34689999999999999999999999999999863

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.17  E-value=0.01  Score=54.31  Aligned_cols=72  Identities=14%  Similarity=0.120  Sum_probs=48.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc--
Q 004918          310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF--  385 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--  385 (724)
                      ||||||+|.||...+..+... +++|+ ++|+++++++...+.          .+ +        .......++++.+  
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~----------~~-~--------~~~~~~~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-Y--------PESTKIHGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-C--------CTTCEEESSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhc----------cc-c--------ccceeecCcHHHhhh
Confidence            799999999999999888775 66766 679999876653221          11 0        0112234555332  


Q ss_pred             -CCCCEEEEcccCChH
Q 004918          386 -KDVDMVIEAVIESVP  400 (724)
Q Consensus       386 -~~aDlVIeav~e~~~  400 (724)
                       .+.|+|+.|.|.+..
T Consensus        64 ~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1          64 DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             CTTCCEEEECCCGGGH
T ss_pred             ccccceeeecccchhh
Confidence             568999999985443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.16  E-value=0.007  Score=50.76  Aligned_cols=83  Identities=17%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  388 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  388 (724)
                      ++|.|||+|..|..-|..|.+.|.+|++++.....-..          .+.+.+.++         .+.-.-+.+.+.++
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~i~---------~~~~~~~~~dl~~~   73 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGMLT---------LVEGPFDETLLDSC   73 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCCce---------eeccCCCHHHhCCC
Confidence            68999999999999999999999999999876543111          112222211         01111122568899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHh
Q 004918          389 DMVIEAVIESVPLKQKIFSELEK  411 (724)
Q Consensus       389 DlVIeav~e~~~~k~~v~~~l~~  411 (724)
                      ++|+.|. ++..+...+++...+
T Consensus        74 ~lv~~at-~d~~~n~~i~~~a~~   95 (113)
T d1pjqa1          74 WLAIAAT-DDDTVNQRVSDAAES   95 (113)
T ss_dssp             SEEEECC-SCHHHHHHHHHHHHH
T ss_pred             cEEeecC-CCHHHHHHHHHHHHH
Confidence            9999875 466776677665443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.15  E-value=0.01  Score=47.39  Aligned_cols=65  Identities=20%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcH-HHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGLMGS-GIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~mG~-~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      +||-|||-|-+|- ++|..|.+.|++|...|+++...-+          .+.+.|.           .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi-----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGI-----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCC-----------eEEeeecccccCC
Confidence            4799999999997 7899999999999999998643222          1223331           1322334466788


Q ss_pred             CCEEEEc
Q 004918          388 VDMVIEA  394 (724)
Q Consensus       388 aDlVIea  394 (724)
                      +|+||-+
T Consensus        61 ~d~vV~S   67 (89)
T d1j6ua1          61 PDLVIKT   67 (89)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.12  E-value=0.0094  Score=53.71  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~   67 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK   67 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence            4799999999999999999999999999999999987754

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0079  Score=58.51  Aligned_cols=143  Identities=20%  Similarity=0.236  Sum_probs=87.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      --+++....+.+..+.+.+.++ .+-.|.++-     |.|+.+.+-...     ...+.... ..+ ..+.....|+|++
T Consensus       109 gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~-----sgG~r~~e~~~s-----l~~~~~~~-~~~-~~~~~~~vP~I~v  175 (263)
T d2f9yb1         109 GGSMGSVVGARFVRAVEQALED-NCPLICFSA-----SGGARMQEALMS-----LMQMAKTS-AAL-AKMQERGLPYISV  175 (263)
T ss_dssp             TTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEE-----ESSBCGGGTHHH-----HHHHHHHH-HHH-HHHHHTTCCEEEE
T ss_pred             ccccccchhhHHhHHHHHHHHc-CCCeEEEec-----CCCcccccccch-----hhcchhHH-HHH-HHHHhCCCceEEE
Confidence            4788888899999998888765 345666653     234444332110     00111111 122 3356678999999


Q ss_pred             ECccccchhHH-HHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC-----CHHHHHHCC
Q 004918          105 VEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI-----TSEEGWKLG  178 (724)
Q Consensus       105 v~G~a~GgG~~-lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i-----~a~eA~~~G  178 (724)
                      +.|.|.||+.. +++++|++++.+.+.+++.-.               +.      .+ ..+|+.+     +++-..+.|
T Consensus       176 ~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP---------------~v------ve-~~~ge~~~e~~g~a~~~~~~G  233 (263)
T d2f9yb1         176 LTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP---------------RV------IE-QTVREKLPPGFQRSEFLIEKG  233 (263)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH---------------HH------HH-HHHTSCCCTTTTBHHHHGGGT
T ss_pred             ecCCcchHHHhhhhhcCceEeeecceeeeccCH---------------HH------Hh-hhcCCcCChhhccHHHHHhCC
Confidence            99999999864 777888888888877664211               11      11 1334444     344446789


Q ss_pred             CcceecCcchHHHHHHHHHHHHHc
Q 004918          179 LIDAVVTSEELLKVSRLWALDIAA  202 (724)
Q Consensus       179 lv~~vv~~~~l~~~a~~~a~~la~  202 (724)
                      +||.|+++++..+....+.+.|..
T Consensus       234 ~iD~vv~~ee~~~~l~~~l~~L~~  257 (263)
T d2f9yb1         234 AIDMIVRRPEMRLKLASILAKLMN  257 (263)
T ss_dssp             CCSEECCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEECCHHHHHHHHHHHHHHhh
Confidence            999999877766555555444443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0012  Score=53.60  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||+|+|+|..|.++|..|.+.|.+|+++|.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            6899999999999999999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.99  E-value=0.0016  Score=65.18  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||+|||+|.-|.+.|..|+++|++|+++|.++.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6899999999999999999999999999998753

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.91  E-value=0.069  Score=51.38  Aligned_cols=138  Identities=13%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004918           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (724)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa  104 (724)
                      --+++....+.+..+.+.+..+ .+-.|.|.-.|     |+.+.+-...     ...+.. ..... . ...-.+|+|++
T Consensus       101 gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~dsg-----Garm~e~~~~-----~~~~~~-~~~~~-~-~~s~~vP~I~v  166 (258)
T d1xnya1         101 GGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEGVAS-----LGAYGE-IFRRN-T-HASGVIPQISL  166 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGTHHH-----HHHHHH-HHHHH-H-HTTTTSCEEEE
T ss_pred             cCccchhhHHHHHHHHHHHHHc-CCceEEEecCC-----CcccCccccc-----ccchhH-HHHHH-H-HHcCCCCEEEE
Confidence            4788899999999999888765 45677776433     3334322110     000111 11112 1 23456999999


Q ss_pred             ECccccchhHHHHhhcCEEEEeC-CceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCCCHHHH-------HH
Q 004918          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK  176 (724)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA-------~~  176 (724)
                      +.|+|.||+......||++|+.+ .+.+++.          |     |+.+      + ..+|+.++.+|+       ..
T Consensus       167 v~G~~~gG~a~~~~~~~~vim~~~~a~i~~a----------G-----P~vv------~-~~~ge~i~~eelgga~~h~~~  224 (258)
T d1xnya1         167 VVGPCAGGAVYSPAITDFTVMVDQTSHMFIT----------G-----PDVI------K-TVTGEDVGFEELGGARTHNST  224 (258)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEETTTCEEESS----------C-----HHHH------H-HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EcCCcChhHHHHHHhccchhhcccceEEEec----------C-----HHHH------H-HHhcCccChHHhccHHHHHhc
Confidence            99999999999999999999875 4555421          1     1111      1 357888888875       45


Q ss_pred             CCCcceecCcchHHHHHHHHHHHHH
Q 004918          177 LGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       177 ~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      .|++|.+++++   +.+.+.++++.
T Consensus       225 sG~~d~v~~de---~ea~~~~r~~L  246 (258)
T d1xnya1         225 SGVAHHMAGDE---KDAVEYVKQLL  246 (258)
T ss_dssp             SSCCSEEESSH---HHHHHHHHHHH
T ss_pred             CCeeEEEeCCH---HHHHHHHHHHH
Confidence            79999999654   34444444433

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0097  Score=53.37  Aligned_cols=68  Identities=10%  Similarity=-0.042  Sum_probs=44.7

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc-Cc
Q 004918          310 KVAVIGGGLMGSG-IATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  385 (724)
Q Consensus       310 kI~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  385 (724)
                      ||||||+|.||.. ....+... ++++ .++|+++++++...+..                       .+...++++ .+
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~   59 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSLA   59 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhhh
Confidence            7999999999986 45555544 6665 47899988766543211                       122334443 34


Q ss_pred             CCCCEEEEcccCChH
Q 004918          386 KDVDMVIEAVIESVP  400 (724)
Q Consensus       386 ~~aDlVIeav~e~~~  400 (724)
                      ++.|+|+.|+|.+..
T Consensus        60 ~~~D~V~I~tp~~~h   74 (164)
T d1tlta1          60 ASCDAVFVHSSTASH   74 (164)
T ss_dssp             TTCSEEEECSCTTHH
T ss_pred             hhcccccccccchhc
Confidence            789999999995543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0015  Score=60.29  Aligned_cols=41  Identities=15%  Similarity=0.340  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  349 (724)
                      ++|.|||+|-+|.+++..|.+.|. ++++++|+++.++++..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            689999999999999999999987 79999999988777554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.74  E-value=0.0023  Score=61.91  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +.+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.73  E-value=0.038  Score=50.11  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=35.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            579999999999999999989997 7999999999987654

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.084  Score=50.82  Aligned_cols=169  Identities=12%  Similarity=0.071  Sum_probs=105.7

Q ss_pred             cCcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHH
Q 004918           12 NDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (724)
Q Consensus        12 ~~~v~~i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (724)
                      ++...-+.-|+|..  .+++++-.+-..+.++..+.. ++-.|.|.-. ..|-.|.+-+.          ....+...++
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~----------~g~~~~ga~~  132 (264)
T d1vrga2          65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH----------GGIIRHGAKL  132 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHH
T ss_pred             cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH----------HhHHHHHHHH
Confidence            33333344467754  589999999999999888765 5667777543 34656554332          1234455567


Q ss_pred             HHHHHhcCCCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhhccc-c---c--HHHH
Q 004918           90 VVNLIEDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---G--LSKA  159 (724)
Q Consensus        90 ~~~~l~~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~-~---G--~~~a  159 (724)
                      + .++..+..|.|+.|=|.++|+|..-..    .+|++++.++++++.-       ..-+++..+-+. +   .  ....
T Consensus       133 ~-~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm-------~pe~aa~v~~~~~l~~~~~~~~~~  204 (264)
T d1vrga2         133 L-YAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVM-------GPEGAANIIFKREIEASSNPEETR  204 (264)
T ss_dssp             H-HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred             H-HHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEec-------CHHHhhhhhhhhhhhhhhCcHHHH
Confidence            7 779999999999999999998763322    4888888888777643       222222222111 0   0  0000


Q ss_pred             HHH--HHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHH
Q 004918          160 IEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI  200 (724)
Q Consensus       160 ~~l--~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  200 (724)
                      .++  .+.-+.-++-.+.+.|++|.|+++.+.........+.+
T Consensus       205 ~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l  247 (264)
T d1vrga2         205 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVC  247 (264)
T ss_dssp             HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence            010  01112236788889999999999998877665555433

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.61  E-value=0.0019  Score=58.74  Aligned_cols=40  Identities=18%  Similarity=0.113  Sum_probs=36.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      -||.|||+|..|..-+......|..|+++|++++++++..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            4899999999999999999999999999999999877754

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.60  E-value=0.018  Score=51.89  Aligned_cols=135  Identities=15%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      -||+|||+|.||...+..+.+. +++++ ++|++++....                           .......+. +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            3799999999999999988765 56654 57887653111                           112223333 456


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHhcccCCCCCEEEEecCCCCCCCCeeeEecCCCCC
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  465 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveii~~~~t~  465 (724)
                      .+.|+|++|.|.....  ++.   .+.+..+.-+++..                         ++.           .++
T Consensus        57 ~~~D~Vvi~tp~~~h~--~~a---~~aL~aG~~vv~~~-------------------------~~~-----------~~~   95 (170)
T d1f06a1          57 DDVDVLFLCMGSATDI--PEQ---APKFAQFACTVDTY-------------------------DNH-----------RDI   95 (170)
T ss_dssp             TTCSEEEECSCTTTHH--HHH---HHHHTTTSEEECCC-------------------------CCG-----------GGH
T ss_pred             cccceEEEeCCCcccH--HHH---HHHHHCCCcEEEec-------------------------Ccc-----------ccC
Confidence            7899999999855432  222   22233343222110                         010           124


Q ss_pred             HHHHHHHHHHHHHcCCeeEE-EcCCCchhhhhhhhHHHHHHHHHHHcC
Q 004918          466 AQVILDLMTVGKIIKKVPVV-VGNCTGFAVNRAFFPYSQSARLLVSLG  512 (724)
Q Consensus       466 ~e~~~~~~~l~~~lGk~~v~-v~d~pG~i~nRl~~~~~~Ea~~l~~~G  512 (724)
                      ++..+.+..+.+.-|+..++ .+-.|||...|. .+....+-++.+.|
T Consensus        96 ~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~~-~~~~~~~~~~~~~G  142 (170)
T d1f06a1          96 PRHRQVMNEAATAAGNVALVSTGRNPDFTASSQ-IAFGRAAHRMKQQG  142 (170)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCSCHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCceEEEeceeccchhHHHH-HHHHHHHHHHHhcC
Confidence            66677777788887765443 244566666554 34455666777776

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.59  E-value=0.0048  Score=59.99  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      .||++|  |++-||.++|..|++.|++|++++|+++.+++..+.++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~   47 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR   47 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            378877  45779999999999999999999999999888766554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.55  E-value=0.03  Score=53.95  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |||++| |+ +-+|.++|..|++.|++|++.||+++.+++..+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            588877 55 67999999999999999999999999888766544

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.48  E-value=0.012  Score=54.67  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|+|.|.|.+|..+|..|.+.|..|+++|.+++.+...
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            689999999999999999999999999999999877653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0038  Score=57.13  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +-+||+|||+|.-|..-|..+++.||+|++++++++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            347999999999999999999999999999999864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.46  E-value=0.01  Score=59.52  Aligned_cols=88  Identities=16%  Similarity=0.066  Sum_probs=57.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      ++++|||+|.++...+..+... . .+|.+|+|++++.++..++...       .+            .....+..+++.
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~-------~~------------~~~~~~~~~a~~  186 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG------------ISASVQPAEEAS  186 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT------------CCEEECCHHHHT
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh-------cC------------Cccccchhhhhc
Confidence            5799999999999999888653 3 3899999999988776543321       11            011123336778


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +||+|+.|.+....+..      .+.+++++.|..
T Consensus       187 ~aDiV~taT~s~~P~~~------~~~l~~G~hv~~  215 (320)
T d1omoa_         187 RCDVLVTTTPSRKPVVK------AEWVEEGTHINA  215 (320)
T ss_dssp             SSSEEEECCCCSSCCBC------GGGCCTTCEEEE
T ss_pred             cccEEEEeccCcccccc------hhhcCCCCeEee
Confidence            89999988864333221      123556665544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.032  Score=49.11  Aligned_cols=97  Identities=6%  Similarity=-0.041  Sum_probs=58.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhH--hcCCCCHHHHHHhhcCcccccCc--cC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV--TRGKLTQDKANNALKMLKGVLDY--SE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~--~~g~~~~~~~~~~~~~i~~~~~~--~~  384 (724)
                      .+|.|+|.|.+|..++..|.+.|++|+++|.+++......+...   ...+  -.|-.+..            +.+  ..
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---~~~~~vi~Gd~~d~------------~~L~~a~   68 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDS------------SVLKKAG   68 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSH------------HHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---cCCcEEEEccCcch------------HHHHHhc
Confidence            35999999999999999999999999999999886544322111   0000  01111100            011  34


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      +.+||.||.+.+++.... .+...+....+.-.+++-
T Consensus        69 i~~a~~vi~~~~~d~~n~-~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          69 IDRCRAILALSDNDADNA-FVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             TTTCSEEEECSSCHHHHH-HHHHHHHHHTSSSCEEEE
T ss_pred             cccCCEEEEccccHHHHH-HHHHHHHHhCCCCceEEE
Confidence            678999999988654432 222334444444446554

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.40  E-value=0.0028  Score=53.68  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            68999999999999999999999999999987753

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.36  E-value=0.034  Score=50.50  Aligned_cols=77  Identities=12%  Similarity=0.040  Sum_probs=47.6

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHCC--CcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-
Q 004918          310 KVAVIGGGLMGSG-IATAHILNN--IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  384 (724)
Q Consensus       310 kI~VIG~G~mG~~-iA~~la~~G--~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  384 (724)
                      ||+|||+|.||.. ....+.+.+  ++|+ ++|+++++++...+..                      +.....+++++ 
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~----------------------~~~~~~~~~~el   62 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV----------------------GNPAVFDSYEEL   62 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH----------------------SSCEEESCHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc----------------------cccceeeeeecc
Confidence            7999999999987 466666543  3555 7899998866543211                      11223445532 


Q ss_pred             c--CCCCEEEEcccCChHHHHHHHHHHH
Q 004918          385 F--KDVDMVIEAVIESVPLKQKIFSELE  410 (724)
Q Consensus       385 ~--~~aDlVIeav~e~~~~k~~v~~~l~  410 (724)
                      +  .+.|+|+.|+|.+.  -.++...+.
T Consensus        63 l~~~~id~v~I~tp~~~--h~~~~~~al   88 (181)
T d1zh8a1          63 LESGLVDAVDLTLPVEL--NLPFIEKAL   88 (181)
T ss_dssp             HHSSCCSEEEECCCGGG--HHHHHHHHH
T ss_pred             ccccccceeeccccccc--ccccccccc
Confidence            2  46799999998433  334444433

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.35  E-value=0.014  Score=52.04  Aligned_cols=98  Identities=19%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGGGLMGSG-IATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~  384 (724)
                      -||||||+|.+|.. +...+... ..+++. .+++++.......         .+.+.-. ....+..       .+...
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~i~~~~~~~d~l-------~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMGVTTTYAGVEGL-------IKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTTCCEESSHHHHH-------HHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcCCcccccceeee-------eeccc
Confidence            37999999999986 45555544 335544 5887653221110         1111100 0000000       00123


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      ..+.|+|+.|+|......+...   ....+.++.++++++.
T Consensus        69 ~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             ccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            4679999999985445444332   2234678888999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0023  Score=54.79  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=32.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +|++|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            68999999999999999999999999999987643

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.31  E-value=0.033  Score=52.48  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=45.3

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC-c
Q 004918          310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  385 (724)
Q Consensus       310 kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  385 (724)
                      ||||||+|.||.. +...+... +.+|+ ++|+++++++...+..          + +..       ..+...+|+++ +
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~----------~-i~~-------~~~~~~~d~~ell   96 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYDYSNFDKIA   96 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEECSSSGGGGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh----------c-ccc-------ccccccCchhhhc
Confidence            7999999999975 44555443 66766 7899999877643211          1 110       11222345533 3


Q ss_pred             --CCCCEEEEcccCCh
Q 004918          386 --KDVDMVIEAVIESV  399 (724)
Q Consensus       386 --~~aDlVIeav~e~~  399 (724)
                        .+.|+|+.|+|...
T Consensus        97 ~~~~iD~V~I~tp~~~  112 (221)
T d1h6da1          97 KDPKIDAVYIILPNSL  112 (221)
T ss_dssp             GCTTCCEEEECSCGGG
T ss_pred             ccccceeeeeccchhh
Confidence              46899999998444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.26  E-value=0.0042  Score=57.18  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  342 (724)
                      +||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            689999999999999999999999 5999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.21  E-value=0.004  Score=60.75  Aligned_cols=31  Identities=39%  Similarity=0.496  Sum_probs=29.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |.|||+|.+|.++|..|+++|++|+++|+++
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            9999999999999999999999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.061  Score=48.12  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            579999999999999999999998 7999999999988754

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.15  E-value=0.074  Score=51.48  Aligned_cols=160  Identities=15%  Similarity=0.166  Sum_probs=101.9

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.-|+|..  ..++.+-.+...+.++..++. ++-.|.|.-. ..|..|-+-+.-          ...+...+++ .++.
T Consensus        74 vian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E~~----------g~~~~ga~~~-~a~a  140 (271)
T d2a7sa2          74 IVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYG  140 (271)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHH----------CHHHHHHHHH-HHHH
T ss_pred             EEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHHHh----------hHHHHHHHHH-HHHH
Confidence            34456643  589999999999999988764 5777777543 346666543321          2334455667 7799


Q ss_pred             cCCCcEEEEECccccchhHHHH----hhcCEEEEeCCceeeCcccccCccCCcchhhhh-cccccH-----------HHH
Q 004918           96 DCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVGL-----------SKA  159 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~la----lacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l-~r~~G~-----------~~a  159 (724)
                      .+..|.|+.|-|.++|+|....    +.+|++++.++++++.-.       .-++...+ .+.+..           ...
T Consensus       141 ~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvMg-------pegaa~v~~~~~l~~~~~~~~~~~~~~~~  213 (271)
T d2a7sa2         141 EATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMG-------ASGAVGFVYRQQLAEAAANGEDIDKLRLR  213 (271)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTTTTTTGGGTSSCCTTSSTTH
T ss_pred             hCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeecC-------HHHHHHHHHHHhhhhhhhcccchHHHHHH
Confidence            9999999999999999875432    247998888888777532       22222111 111110           001


Q ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHH
Q 004918          160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA  197 (724)
Q Consensus       160 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a  197 (724)
                      ...-..-+.-++-.+.+.|++|.|+++.+..+......
T Consensus       214 ~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L  251 (271)
T d2a7sa2         214 LQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTAL  251 (271)
T ss_dssp             HHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHH
Confidence            11112333456778888999999999988766654444

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0031  Score=53.33  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=31.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            5899999999999999999999999999999764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.13  E-value=0.011  Score=57.04  Aligned_cols=44  Identities=27%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA  353 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~  353 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+.+
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~   51 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE   51 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45544 55 6799999999999999999999999998877665543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.07  E-value=0.0029  Score=53.60  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||+|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            6899999999999999999999999999998653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.038  Score=54.60  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      .|++|| |+ +-+|.++|..|++.|++|++.+|+++.+++..+++.
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~   57 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ   57 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            356655 55 779999999999999999999999999887765443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.011  Score=56.75  Aligned_cols=42  Identities=19%  Similarity=0.143  Sum_probs=35.5

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |+++| |+ +-+|.++|..|+++|.+|+++||+++.+++..+++
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56655 66 56999999999999999999999999988776544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.92  E-value=0.0083  Score=51.13  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      .++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            468999999999999999999999999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.82  E-value=0.0064  Score=60.97  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .+||+|||+|.-|.+.|..|+++|++|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            47999999999999999999999999999998764

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.79  E-value=0.12  Score=49.59  Aligned_cols=162  Identities=15%  Similarity=0.169  Sum_probs=102.4

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      +.-|+|.  ..+++++-.+...+.++.++.. ++-.|.|.-.+ .|-.|.+-+.          ....+...+++ .++.
T Consensus        69 via~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~p-Gf~~G~~~E~----------~g~~~~ga~~~-~a~a  135 (263)
T d1xnya2          69 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQEH----------DGIIRRGAKLI-FAYA  135 (263)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeeccc-ccccchhHHH----------HhHHHHHHHHH-HHHH
Confidence            3345664  3699999999999999988865 56677775433 3656554321          12344555667 7799


Q ss_pred             cCCCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhhccccc-----------HHHHH
Q 004918           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-----------LSKAI  160 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G-----------~~~a~  160 (724)
                      ++..|.|+.|-|.++|+|.....    ..|+++|.+++.++.-.       .-++...+-+.-.           .....
T Consensus       136 ~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~-------pe~aa~il~~~~~~~a~~~~~~~~~~~~~  208 (263)
T d1xnya2         136 EATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMG-------AQGAVNILHRRTIADAGDDAEATRARLIQ  208 (263)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTHHHHHSCCTTCSSSHHHHHH
T ss_pred             ccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccC-------HHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            99999999999999998765433    35888888888777532       2232222211100           00011


Q ss_pred             HHHHcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004918          161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       161 ~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      +.  .-...++..+...|.+|.|+++.+.........+.+.
T Consensus       209 ~~--~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~  247 (263)
T d1xnya2         209 EY--EDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  247 (263)
T ss_dssp             HH--HHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             HH--HHHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHHh
Confidence            11  1112356778889999999999998776665555443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.77  E-value=0.014  Score=56.52  Aligned_cols=43  Identities=26%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~   49 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL   49 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            55655 55 679999999999999999999999999887665443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.69  E-value=0.09  Score=51.45  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      |++||  |+|.+|.++|..|++.|++|++.||+.+.+++..+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~   70 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS   70 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            67766  56999999999999999999999999999887665443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.64  E-value=0.073  Score=51.37  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      .||++|  |++-+|.++|..|++.|++|++.+|+++.+++..+++
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            478888  5589999999999999999999999999988776544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.027  Score=46.85  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ..||+|||+|..|.-+|....+-|++|+++|.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            458999999999999999999999999999998763

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.63  E-value=0.0069  Score=59.21  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.63  E-value=0.0053  Score=52.06  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||+|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            6899999999999999999999999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.61  E-value=0.011  Score=50.28  Aligned_cols=36  Identities=22%  Similarity=0.488  Sum_probs=33.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            689999999999999999999999999999987654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.014  Score=56.15  Aligned_cols=42  Identities=17%  Similarity=0.111  Sum_probs=35.3

Q ss_pred             ceEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      .|++|| | ++-+|.++|..|++.|++|++.+|+++.+++..+.
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~   47 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY   47 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            367777 5 47799999999999999999999999988776543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0059  Score=52.28  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999999753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.58  E-value=0.011  Score=57.52  Aligned_cols=42  Identities=26%  Similarity=0.350  Sum_probs=35.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   49 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   49 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45555 66 66999999999999999999999999988776544

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.0061  Score=47.21  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      |++|+|||+|..|.-++....+-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            58999999999999999999999999999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.44  E-value=0.0071  Score=59.44  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +|.|||+|.-|..+|..|+++|++|+++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7999999999999999999999999999998753

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.42  E-value=0.023  Score=51.62  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CCcEEEE-eCCHHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~~  343 (724)
                      |-||+|.|.|.||+.+++.+... .++|+.+ |+++..
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~   38 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY   38 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH
Confidence            45899999999999999999876 4576665 665543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.40  E-value=0.032  Score=48.85  Aligned_cols=98  Identities=18%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CC---cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      .||+|||+ |..|.-+.+.|.++ .|   ++..+.-+...                  |+...  .......+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~------------------gk~~~--~~~~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG------------------VPAPN--FGKDAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS------------------SBCCC--SSSCCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc------------------ccccc--cCCcceeeecccchh
Confidence            37999998 99999999877654 34   44444433211                  11000  000000111122334


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      .++++|+||.|+|  ..+.+++..++.+. ..+++++++++...++
T Consensus        61 ~~~~~DvvF~alp--~~~s~~~~~~l~~~-g~~~~VIDlSsdfR~~  103 (147)
T d1mb4a1          61 SLKQLDAVITCQG--GSYTEKVYPALRQA-GWKGYWIDAASTLRMD  103 (147)
T ss_dssp             HHTTCSEEEECSC--HHHHHHHHHHHHHT-TCCSEEEESSSTTTTC
T ss_pred             hhccccEEEEecC--chHHHHHhHHHHHc-CCceEEEeCCcccccc
Confidence            5789999999999  66667777776553 3346788999887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.38  E-value=0.0049  Score=51.90  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +++.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            68999999999999999999999999999987543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.33  E-value=0.011  Score=50.35  Aligned_cols=32  Identities=16%  Similarity=0.038  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~  340 (724)
                      ++|+|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.29  E-value=0.1  Score=50.25  Aligned_cols=42  Identities=21%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |++|| |+ +-||.++|..|++.|++|++.||+++.+++..+.+
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55555 55 67999999999999999999999999988776544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.012  Score=56.75  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.||+++.+++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE   47 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            55555 54 88999999999999999999999998877643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.27  E-value=0.019  Score=51.99  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            479999999999999999888897 7999999999877754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.26  E-value=0.012  Score=50.05  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ++|.|||+|..|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5799999999999999999999999999998764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.22  E-value=0.11  Score=49.76  Aligned_cols=43  Identities=21%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      .||++| |+ +-+|.++|..|++.|++|++++|+++.+++..+.+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l   54 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI   54 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            477777 55 78999999999999999999999999888765543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.20  E-value=0.1  Score=50.56  Aligned_cols=42  Identities=24%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      |+++| | ++-||.++|..|++.|++|++.+|+++.+++..+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l   49 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII   49 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56666 4 478999999999999999999999999988766543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.089  Score=50.87  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.+|+++.+++..+.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~   57 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH   57 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45544 66 6699999999999999999999999998876543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.089  Score=50.53  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=36.4

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      |+++|  |++.+|.++|..|++.|++|++++|+++.++++.+.++
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            66666  45889999999999999999999999999888765443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.16  E-value=0.0089  Score=58.26  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      +||+|||+|.-|.+.|..|+++|++|+++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3799999999999999999999999999998753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.16  E-value=0.014  Score=55.91  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.||+++.+++..+
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~   47 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE   47 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            55555 65 679999999999999999999999988776543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.04  E-value=0.072  Score=51.11  Aligned_cols=39  Identities=18%  Similarity=0.197  Sum_probs=33.4

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      |++|| | ++-+|.++|..|++.|++|++.|++++.+++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~   47 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA   47 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            66766 5 467999999999999999999999998877654

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=94.03  E-value=0.13  Score=49.42  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004918           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (724)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (724)
                      |.=|+|.  ..+++++-.+...+.++..++. ++-.|.|.=. ..|..|-+-+.          ....+...+++ .++.
T Consensus        71 vian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~g~i~~ga~~~-~a~a  137 (264)
T d1on3a2          71 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYS  137 (264)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence            3346664  3689999999999999888764 5777777533 34666655322          12345555777 7799


Q ss_pred             cCCCcEEEEECccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhhccc-c------cHHHHHHH-H
Q 004918           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V------GLSKAIEM-M  163 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~-~------G~~~a~~l-~  163 (724)
                      ++.+|.|+.|=|.++|+|..-..    .+|++++.+++.++       .++.-|++..+-+. +      ...+...+ -
T Consensus       138 ~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e  210 (264)
T d1on3a2         138 EATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEE  210 (264)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Confidence            99999999999999998754332    35777777666655       44433433322221 1      00001001 0


Q ss_pred             HcCCCCCHHHHHHCCCcceecCcchHHHHHHHHHHHHH
Q 004918          164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       164 ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                      ..-+.-++-.+.+.|.+|.|++|.+.........+.+.
T Consensus       211 ~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~  248 (264)
T d1on3a2         211 YQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYA  248 (264)
T ss_dssp             HHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGG
T ss_pred             HHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHh
Confidence            11122356778889999999999987766655554443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.03  E-value=0.092  Score=50.05  Aligned_cols=39  Identities=28%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.||+++.++...
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   47 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA   47 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56666 65 77999999999999999999999998877654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.02  E-value=0.011  Score=59.56  Aligned_cols=36  Identities=33%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             CcceEEEEcCCCCcHHHHHHHHHCC--CcEEEEeCCHH
Q 004918          307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSE  342 (724)
Q Consensus       307 ~~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~  342 (724)
                      .|+||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5899999999999999999998876  59999999854

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.98  E-value=0.014  Score=56.79  Aligned_cols=41  Identities=27%  Similarity=0.335  Sum_probs=34.5

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      |+++| | ++-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   49 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN   49 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56666 5 47799999999999999999999999988776543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.94  E-value=0.2  Score=48.03  Aligned_cols=42  Identities=19%  Similarity=0.083  Sum_probs=35.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      |+|-|.|+ +.||.++|..|++.|++|++.+|+++.++.+.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~   49 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI   49 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45566665 7899999999999999999999999988876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.92  E-value=0.015  Score=50.12  Aligned_cols=36  Identities=33%  Similarity=0.575  Sum_probs=33.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            689999999999999999999999999999876543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.89  E-value=0.0063  Score=51.93  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      +++.|||+|.+|.-+|..|.+.|.+|+++.+++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            689999999999999999999999999999876543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.86  E-value=0.021  Score=55.34  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA  353 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~  353 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.+++++.+++..+++.+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~   55 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK   55 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Confidence            66666 55 6699999999999999999999999888776665543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.83  E-value=0.093  Score=52.49  Aligned_cols=41  Identities=17%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      +-++|.|.|+ |.+|+.++..|.++|++|+...|+.+.....
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            3578999977 9999999999999999999999998775543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.031  Score=50.03  Aligned_cols=39  Identities=21%  Similarity=0.064  Sum_probs=34.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      .+|.|+|+|.+|...++.+...|.+|++.+.++++.+.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            579999999999999888888999999999999987654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.13  Score=49.18  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=36.7

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      |+++|  |++-+|.++|..|++.|++|++.+|+++.+++..+.++
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~   56 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ   56 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            77777  55789999999999999999999999999887765443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.74  E-value=0.012  Score=49.64  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=32.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            68999999999999999999999999999987654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=93.65  E-value=0.028  Score=56.40  Aligned_cols=71  Identities=23%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  385 (724)
                      ++++|||+|.++..-+..+.. .+. +|.+|+|++++.++..+++..      ..|           -.+...++. +++
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~------~~g-----------~~v~~~~s~~eav  191 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSG-----------LTIRRASSVAEAV  191 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTT-----------CEEEECSSHHHHH
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh------ccC-----------CCceecCCHHHHH
Confidence            579999999999988877743 344 899999999988776543211      001           123445555 678


Q ss_pred             CCCCEEEEccc
Q 004918          386 KDVDMVIEAVI  396 (724)
Q Consensus       386 ~~aDlVIeav~  396 (724)
                      ++||+|+.|.+
T Consensus       192 ~~ADIi~t~Ta  202 (340)
T d1x7da_         192 KGVDIITTVTA  202 (340)
T ss_dssp             TTCSEEEECCC
T ss_pred             hcCCceeeccc
Confidence            89999988774

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.15  Score=48.80  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=34.6

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      |+++| |+ +-+|.++|..|++.|.+|++.||+++.+++..+.
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   46 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA   46 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56666 55 7799999999999999999999999988776543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.018  Score=56.88  Aligned_cols=34  Identities=29%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      -.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3689999999999999999999999999999764

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.55  E-value=0.039  Score=47.16  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=57.0

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCcc
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  383 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  383 (724)
                      ++|+|||+    |.+|..+.++|...| ++|+.++.+.+.+                             ..+.+..+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence            68999997    788888888887766 5888887664321                             1234455665


Q ss_pred             CcC-CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEE
Q 004918          384 EFK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCIL  419 (724)
Q Consensus       384 ~~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii  419 (724)
                      ++. ..|+++.++|  .+...++++++.+.--...++
T Consensus        60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEE
T ss_pred             hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEE
Confidence            554 5799999999  888888888877654444444

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.53  E-value=0.015  Score=57.30  Aligned_cols=32  Identities=16%  Similarity=0.491  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      +|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999996 799999874

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.44  E-value=0.12  Score=44.48  Aligned_cols=86  Identities=13%  Similarity=0.036  Sum_probs=61.2

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+|||+    +..|..+...|.+.||+|+.++...+.+                             ....+..++++
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~d   70 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVLD   70 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCcccccccc
Confidence            68999997    5689999999999999988887654321                             12333455555


Q ss_pred             cC-CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCC
Q 004918          385 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  427 (724)
Q Consensus       385 ~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  427 (724)
                      +. ..|+|+.++|  .+...++++++.+.- ...++ ..+.+..
T Consensus        71 lp~~iD~v~i~vp--~~~~~~~~~e~~~~g-~k~v~-~~~G~~~  110 (139)
T d2d59a1          71 IPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVW-FQYNTYN  110 (139)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEE-ECTTCCC
T ss_pred             cCccceEEEEEeC--HHHHHHHHHHHHHhC-CCEEE-EeccccC
Confidence            54 6899999999  888889998877653 34444 3444444

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.43  E-value=0.044  Score=52.91  Aligned_cols=43  Identities=30%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHH
Q 004918          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i  351 (724)
                      .|+++|  |++-||.++|..|++.|++|++.+++ ++.+++..+.+
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~   49 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL   49 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHH
Confidence            367777  45779999999999999999999997 45566554443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.40  E-value=0.016  Score=54.88  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      ||+|||+|.-|.+.|..|+++|+ +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            79999999999999999999996 799999875

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.22  E-value=0.056  Score=45.21  Aligned_cols=73  Identities=25%  Similarity=0.280  Sum_probs=54.2

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+|||+    +..|..+...|.+.||+|+.++.+.+.+                             ..+.+..++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            68999996    6779999999999999988887654321                             12334455555


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhh
Q 004918          385 F-KDVDMVIEAVIESVPLKQKIFSELEKA  412 (724)
Q Consensus       385 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~  412 (724)
                      + ...|+++.++|  .+...++++++.+.
T Consensus        53 lp~~~D~vvi~vp--~~~~~~~l~~~~~~   79 (116)
T d1y81a1          53 LPKDVDVIVFVVP--PKVGLQVAKEAVEA   79 (116)
T ss_dssp             SCTTCCEEEECSC--HHHHHHHHHHHHHT
T ss_pred             ccccceEEEEEeC--HHHHHHHHHHHHhc
Confidence            5 45699999999  88778888876654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.22  E-value=0.012  Score=50.30  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +++.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            68999999999999999999999999999987643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.05  Score=51.92  Aligned_cols=41  Identities=20%  Similarity=0.120  Sum_probs=33.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      ++-|.|+ +-+|.++|..|++.|++|++.+|+++.+++..++
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE   48 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            4445566 6799999999999999999999999887765543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.056  Score=51.59  Aligned_cols=42  Identities=24%  Similarity=0.207  Sum_probs=34.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      |++-|.|+ +.+|.++|..|++.|++|++.||+++.+++..++
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence            34555565 7899999999999999999999999988776543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.01  E-value=0.0055  Score=58.26  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEE
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLK  337 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~  337 (724)
                      +||+|||+|.+|.+.|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            37999999999999999999999875443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.018  Score=56.97  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      |..|.|||+|.-|.++|..|++.|++|++++.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            56899999999999999999999999999998754

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.98  E-value=0.048  Score=53.08  Aligned_cols=43  Identities=21%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      |++|| | ++-+|.++|..|++.|++|++.||+++.+++..+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~   49 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL   49 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            56666 4 4779999999999999999999999999888766544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.98  E-value=0.022  Score=55.38  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=29.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |.|||+|..|.+.|..|+++|++|+++|+..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.84  E-value=0.21  Score=47.55  Aligned_cols=40  Identities=33%  Similarity=0.305  Sum_probs=34.2

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      |+++| | ++-||.++|..|++.|++|++.+|+++.++...+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            67777 4 5779999999999999999999999988776543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.79  E-value=0.18  Score=48.15  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.||+++.+++..+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56655 55 889999999999999999999999998777543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.73  E-value=0.055  Score=52.17  Aligned_cols=43  Identities=16%  Similarity=0.109  Sum_probs=35.9

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      .|+++| |+ +-+|.++|..|++.|++|++++|+++.+++..+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   52 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            366666 44 77999999999999999999999999988776544

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.73  E-value=0.22  Score=47.62  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++-|.|+ +-||.++|..|++.|++|++.||+++.+++.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4455565 6799999999999999999999999887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.65  E-value=0.085  Score=47.47  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            579999999999999999999998 6888999999877654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.63  E-value=0.038  Score=49.70  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=27.6

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCC-CcEEEE-eCCHH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLK-EVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~-d~~~~  342 (724)
                      |.||||-|.|.+|+.+.+.+...+ .+|+.+ |+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            679999999999999999887765 565544 66554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.059  Score=48.16  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||-+ ..|.++|..|++.|..|++++.....+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            689999995 5899999999999999999987654322                                     23568


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                      +|+||.|+...--++       ...+++++++++...+
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence            999999997433332       2457899998875443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.52  E-value=0.048  Score=49.11  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=33.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCc-EEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|.. |++.|+++++++.+.
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~   70 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK   70 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence            5799999999999999998888875 556799998877754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.037  Score=52.90  Aligned_cols=40  Identities=25%  Similarity=0.154  Sum_probs=34.1

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  349 (724)
                      ||+||  |++.+|.++|..|++.|++|++.||+++.++...+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            67766  44779999999999999999999999988776544

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.42  E-value=0.24  Score=46.82  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=31.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++-|.|+ +.+|.++|..|++.|++|++.+|+.+.+++.
T Consensus         7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4445566 6699999999999999999999999887654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.38  E-value=0.19  Score=48.63  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      |+++| |+ +-+|.++|..|++.|++|++.||+++.+++..
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~   46 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELE   46 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            55555 55 88999999999999999999999998876643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.32  E-value=0.031  Score=52.34  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |.|||+|.-|...|..|+++|++|+++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999975

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.15  Score=49.40  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=36.8

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHH
Q 004918          309 RKVAVI--GGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTI  351 (724)
Q Consensus       309 ~kI~VI--G~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i  351 (724)
                      ++|+||  |.+-+|.++|..|++. |..|++++|++++++++.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            579999  6688999999999975 999999999999988876554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.17  E-value=0.072  Score=47.32  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|.|+|+|.+|...++.+...|.+|++.|+++++++.++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            5799999999999999998899999999999999877653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.15  E-value=0.04  Score=52.12  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CCcceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       306 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ..-+||.|||+|.-|...|..+++.|++|++++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            3457999999999999999999999999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.14  E-value=0.052  Score=47.29  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=58.4

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCcc
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS  383 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  383 (724)
                      .||||||+ |..|.-+.+.|.+.+|   ++..+.-+...-+            .+...          ...+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk------------~i~~~----------~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ------------RMGFA----------ESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC------------EEEET----------TEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc------------ceeec----------cccchhccchhh
Confidence            47999998 9999999999987665   5665543322100            00000          001111 11225


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  428 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~  428 (724)
                      ...++|++|.|+|  ...-.++..++.   ..+++|+++++....
T Consensus        61 ~~~~~d~vf~a~p--~~~s~~~~~~~~---~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          61 DFSSVGLAFFAAA--AEVSRAHAERAR---AAGCSVIDLSGALEP  100 (144)
T ss_dssp             CGGGCSEEEECSC--HHHHHHHHHHHH---HTTCEEEETTCTTTT
T ss_pred             hhccceEEEecCC--cchhhhhccccc---cCCceEEeechhhcc
Confidence            6789999999998  555556555543   467888898887753

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.97  E-value=0.45  Score=44.65  Aligned_cols=40  Identities=23%  Similarity=0.125  Sum_probs=28.5

Q ss_pred             ceEEEEcCCCCcHHHHH----HHHH--CCCcEE-EEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIAT----AHIL--NNIYVV-LKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~----~la~--~G~~V~-l~d~~~~~~~~~~  348 (724)
                      -||||||+|.+|+-++.    .+.+  .+++|+ ++|++++.++...
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~   63 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTI   63 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHH
Confidence            48999999998765554    2333  356766 7899998876643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.95  E-value=0.031  Score=52.57  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~  342 (724)
                      .||+|||+|.-|.+-|..|+++  |++|+++|+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4899999999999999999775  789999998864

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.90  E-value=0.037  Score=53.25  Aligned_cols=33  Identities=33%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  342 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  342 (724)
                      +|+|||+|.-|...|..|+++|+ +|++++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            79999999999999999999995 8999999764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.84  E-value=0.17  Score=45.49  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=36.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  349 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  349 (724)
                      ..|.|+|+|.+|...++.+...|. +|++.|+++++++.+++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            479999999999999999999995 89999999999887653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.81  E-value=0.068  Score=51.54  Aligned_cols=41  Identities=22%  Similarity=0.187  Sum_probs=32.5

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKT  350 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~  350 (724)
                      |++||  |++-+|.++|..|++.|++|++.+|+.+ .++...+.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~   51 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEE   51 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            67777  4588999999999999999999999854 45544433

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.12  Score=45.95  Aligned_cols=104  Identities=16%  Similarity=0.060  Sum_probs=59.8

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-c
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  383 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  383 (724)
                      .-||+|+|+ |.||+.++..+.+. +++++ .+|+.....-            ....+.+..    .....+..++++ +
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~------------g~d~~~~~~----~~~~~~~~~~~~~~   67 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL------------GSDAGELAG----AGKTGVTVQSSLDA   67 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC------------SCCTTCSSS----SSCCSCCEESCSTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc------------cchhhhhhc----cccCCceeeccHHH
Confidence            358999996 99999999988775 56654 3454332100            000011000    000123345555 4


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                      ....+|+||+-..  ++...+.++..   ...+.-+++.|+++.-.++.
T Consensus        68 ~~~~~DViIDFs~--p~~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~  111 (162)
T d1diha1          68 VKDDFDVFIDFTR--PEGTLNHLAFC---RQHGKGMVIGTTGFDEAGKQ  111 (162)
T ss_dssp             TTTSCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECCCCCCHHHHH
T ss_pred             HhcccceEEEecc--HHHHHHHHHHH---HhccceeEEecCCCcHHHHH
Confidence            5688999999865  55544554433   33466677788888765443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.044  Score=48.69  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             ceEEEEcCCC-CcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcCC
Q 004918          309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  387 (724)
Q Consensus       309 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  387 (724)
                      ++|+|||-+. +|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~   80 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN   80 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence            6899999865 999999999999999999986544322                                     23467


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecC
Q 004918          388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       388 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                      ||+||.|+.-.--++       .+.+++++++++..
T Consensus        81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG  109 (166)
T d1b0aa1          81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG  109 (166)
T ss_dssp             CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred             hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence            999999986222222       23567888887643

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.64  E-value=0.18  Score=47.27  Aligned_cols=40  Identities=18%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      ++|+|-|.|.+|..+|..|.+.|..|+..|.++..++...
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~   79 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence            6899999999999999999999999999999998876643

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.60  E-value=0.18  Score=43.18  Aligned_cols=81  Identities=12%  Similarity=0.106  Sum_probs=51.1

Q ss_pred             eEEEEcC-CCCcHHHHHHHHH-CCCcEEE-EeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCcC
Q 004918          310 KVAVIGG-GLMGSGIATAHIL-NNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  386 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~-~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  386 (724)
                      ||+|+|+ |.||..++..+.+ .+++++. +|+.... ..                                    ....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence            7999995 9999999988765 4666543 4542110 00                                    0124


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHh
Q 004918          387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  432 (724)
Q Consensus       387 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~  432 (724)
                      ++|+||+-..  ++...+.++...   ..+..+++.|++++..++.
T Consensus        44 ~~DvvIDFS~--p~~~~~~~~~~~---~~~~~~ViGTTG~~~~~~~   84 (135)
T d1yl7a1          44 NTEVVIDFTH--PDVVMGNLEFLI---DNGIHAVVGTTGFTAERFQ   84 (135)
T ss_dssp             TCSEEEECCC--TTTHHHHHHHHH---HTTCEEEECCCCCCHHHHH
T ss_pred             cCCEEEEccc--HHHHHHHHHHHH---hcCCCEEEeccccchhHHH
Confidence            6899999765  454445444433   3466677788888865444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.55  E-value=0.049  Score=48.73  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~   68 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence            5899999999999988888788999999999999887654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.47  E-value=0.096  Score=50.27  Aligned_cols=44  Identities=14%  Similarity=0.144  Sum_probs=37.2

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIE  352 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~  352 (724)
                      .||+|| |+ .-+|.++|..|++   .|++|++.+|+++.+++..+++.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            589999 55 6789999999986   79999999999999888766554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.44  E-value=0.4  Score=45.17  Aligned_cols=42  Identities=21%  Similarity=0.169  Sum_probs=34.8

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCc-------EEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIY-------VVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~-------V~l~d~~~~~~~~~~~~  350 (724)
                      |+|++| |+ +-+|.++|..|++.|++       |++++|+++.+++..+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~   51 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE   51 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence            467766 65 67999999999999997       99999999988876543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.12  E-value=0.073  Score=50.93  Aligned_cols=36  Identities=25%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~  345 (724)
                      |+++| | .+-+|.++|..|++.|++|++.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            55555 5 588999999999999999999999987644

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.94  E-value=0.6  Score=44.71  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCH-HHHHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNS-EYLLKG  347 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~  347 (724)
                      |+++| | ++.+|.+||..|++.|++|++.+++. +.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            66666 4 58999999999999999999998874 444443

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=90.85  E-value=1.2  Score=43.23  Aligned_cols=160  Identities=10%  Similarity=0.093  Sum_probs=96.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE
Q 004918           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (724)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav  105 (724)
                      -+++++-.+-..++++.+++. ++-+|.|.=. ..|-.|-+-+          .....+...+++ .++.++.+|.|+.|
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E----------~~g~~r~ga~~~-~a~~~~~VP~isvi  163 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE----------KAELLGLGQSLI-YSIQTSHIPQFEIT  163 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH----------HTTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH----------hhhHHHHHHHHH-HHHHhhcceeEEEE
Confidence            468899999999999888865 5667776533 3366654432          122344555667 67899999999999


Q ss_pred             CccccchhHHHHh----hcCEEEEeCCceeeCcccccCccCCcchhhhhc-ccccH------------HHHHHHHH-cCC
Q 004918          106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVGL------------SKAIEMML-LSK  167 (724)
Q Consensus       106 ~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~-r~~G~------------~~a~~l~l-tg~  167 (724)
                      =|.++|+|.....    ..|++++     +..|...+|.+++-++...+- +.+..            ..-.++.- .-+
T Consensus       164 ~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~  238 (299)
T d1pixa3         164 LRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT  238 (299)
T ss_dssp             CSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999998854332    2343331     123444555554444433321 11110            00011110 112


Q ss_pred             CCCHHHHHHCCCcceecCcchHHHHHHHHHHHHHcc
Q 004918          168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  203 (724)
Q Consensus       168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (724)
                      ..++-.+.+.|+||.|++|.+.........+.+.++
T Consensus       239 ~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~  274 (299)
T d1pixa3         239 KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQN  274 (299)
T ss_dssp             TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTS
T ss_pred             hcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhC
Confidence            357788889999999999999877776666544443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=90.80  E-value=0.3  Score=46.62  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             ceEEEEcC-CC--CcHHHHHHHHHCCCcEEEEeCCHHHHH
Q 004918          309 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLL  345 (724)
Q Consensus       309 ~kI~VIG~-G~--mG~~iA~~la~~G~~V~l~d~~~~~~~  345 (724)
                      |+|.|.|+ |.  ||.++|+.|++.|.+|++.+++.+.+.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~   46 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI   46 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence            45667785 55  999999999999999999999987643

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.75  E-value=0.13  Score=46.47  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHC-CCcEEEE-eCCHH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc-
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  382 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  382 (724)
                      |.||+|||+ |..|.-+.+.|.++ .+++.-. -++.+ ..-+.   +.......  .+...        .......+. 
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~---~~~~~~~~--~~~~~--------~~~~~~~~~~   67 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKL---ISDLHPQL--KGIVD--------LPLQPMSDVR   67 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCB---HHHHCGGG--TTTCC--------CBEEEESCGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccc---cccccccc--ccccc--------cccccchhhh
Confidence            579999997 99999999999987 5566443 22211 10000   00000000  00000        001111222 


Q ss_pred             cCcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       383 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      ....++|+||.|+|  .....++...+.   ..++.++++++.....
T Consensus        68 ~~~~~~dvvf~alp--~~~s~~~~~~~~---~~~~~vIDlSadfRl~  109 (179)
T d2g17a1          68 DFSADVDVVFLATA--HEVSHDLAPQFL---QAGCVVFDLSGAFRVN  109 (179)
T ss_dssp             GTCTTCCEEEECSC--HHHHHHHHHHHH---HTTCEEEECSSTTSSS
T ss_pred             hhhcccceeecccc--chhHHHHhhhhh---hcCceeeccccccccc
Confidence            33578999999999  555555555443   3677888888776553

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.67  E-value=0.081  Score=46.43  Aligned_cols=36  Identities=11%  Similarity=0.017  Sum_probs=30.3

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLL  345 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~  345 (724)
                      .|.|+  |+|.||..+|..|++.|.+|+++++.+.-+.
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~   78 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY   78 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            45555  9999999999999999999999998765433

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.61  E-value=0.16  Score=45.45  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.++..|. .|+..|+++++.+.+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~   70 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence            579999999999999999999885 8999999999877654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.072  Score=50.84  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             ceEEEE--cCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       309 ~kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      .|+++|  |++.+|.++|..|++.|++|++.||+++.++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE   45 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            367777  66999999999999999999999999987654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.061  Score=53.34  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      |+|||+|.-|.+.|..|+++|++|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999765

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.30  E-value=0.2  Score=44.78  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCC-CcEE-EEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G-~~V~-l~d~~~~~  343 (724)
                      .||+|.|.|.||+.+.+.+.... .+|+ +.|.++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            48999999999999999987653 4554 45666654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.15  E-value=0.2  Score=44.16  Aligned_cols=39  Identities=23%  Similarity=0.170  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      ++|.|+|+|.+|...++.+...|.+|++.++++++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            579999999999998888889999999999999987764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.90  E-value=0.046  Score=51.38  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-------cEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-------YVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-------~V~l~d~~~~  342 (724)
                      .||+|||+|.-|.+-|..|+++||       +|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            489999999999999999999984       7999998764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=89.85  E-value=0.68  Score=44.16  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=29.3

Q ss_pred             ceEEEEcC-C--CCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~-G--~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      |++-|.|+ |  -+|.++|..|++.|++|++.+|+++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45666676 5  49999999999999999999999653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.70  E-value=0.63  Score=43.95  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=29.7

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGG---LMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      |+|-|.|++   -+|.++|..|++.|++|++.+++++..+..
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            345555664   366899999999999999999997654443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.68  E-value=0.11  Score=50.07  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      -+||.|+|+ |.+|+.++..|.+.|++|++++|++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            378999997 999999999999999999999997654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.66  E-value=0.08  Score=50.11  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      -|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            389999999999999999999999999998764

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.65  E-value=0.12  Score=51.11  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=54.9

Q ss_pred             cCCCcEEEEECccccchhHHHHhhcCEEEEeCCceeeCcccccCccCCcchhhhhcccccHHHHHHHHHcCCCC--CHHH
Q 004918           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEE  173 (724)
Q Consensus        96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~P~~g~~~~l~r~~G~~~a~~l~ltg~~i--~a~e  173 (724)
                      .-..|+|++|.|.|+|+|.-++..||++|+.+++.+.+.                    |+ .+.+. .+|+.+  |.+|
T Consensus       238 ~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt--------------------Gp-~~l~~-~lG~eVy~s~~e  295 (333)
T d1uyra1         238 YHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GA-PAINK-MLGREVYTSNLQ  295 (333)
T ss_dssp             HHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS--------------------CH-HHHHH-HSSSCCCSCTHH
T ss_pred             cCCCCEEEEEeCCccccceeecccccEEEEeCCceEEee--------------------CH-HHHHH-hcCccccCChhH
Confidence            357999999999999999999999999999988765432                    11 12222 234444  3332


Q ss_pred             ------HHHCCCcceecCcchHHHHHHHHHHHHH
Q 004918          174 ------GWKLGLIDAVVTSEELLKVSRLWALDIA  201 (724)
Q Consensus       174 ------A~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (724)
                            ..+.|++|.+++.|.   ++.+.+.++.
T Consensus       296 LGG~~i~~~nGv~h~~a~dd~---eai~~i~~~L  326 (333)
T d1uyra1         296 LGGTQIMYNNGVSHLTAVDDL---AGVEKIVEWM  326 (333)
T ss_dssp             HHSHHHHHHHTSSSEEESSHH---HHHHHHHHHH
T ss_pred             hCCHhHHhhCCCceEEeCCHH---HHHHHHHHHH
Confidence                  346899999997652   4444444443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.64  E-value=0.11  Score=50.40  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=31.6

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .+||.|+|+ |.+|+.++..|.+.||+|++.+|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            468999996 99999999999999999999998754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.57  E-value=0.88  Score=42.74  Aligned_cols=42  Identities=19%  Similarity=0.102  Sum_probs=32.6

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i  351 (724)
                      +|++|  |++.+|.++|..|++.|++|++.+ ++++.++...+.+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~   46 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            47777  558899999999999999999865 5777766655433

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.48  E-value=1.1  Score=42.22  Aligned_cols=38  Identities=21%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          309 RKVAVIGGG---LMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       309 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      |++-|.|++   -+|.++|..|++.|++|++.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            345566764   49999999999999999999999765444

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.47  E-value=0.4  Score=45.38  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      .|+++| |+ +-+|.++|..|++.|++|++.|++++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            366666 55 679999999999999999999998753

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.45  E-value=0.13  Score=48.53  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      |++-|.|+ +-+|.++|..|++.|++|++.||+++.+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            34556666 779999999999999999999999887654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.40  E-value=0.079  Score=47.07  Aligned_cols=33  Identities=42%  Similarity=0.483  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC--cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~  341 (724)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            699999999999999999999875  789999876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.37  E-value=0.81  Score=40.14  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+ |.+|...++.+...|. +|+++++++++++.+.
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~   70 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK   70 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence            57999995 9999998888887784 8999999999877654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.26  E-value=0.24  Score=44.07  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=34.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...+..++..|- .|+..|+++++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            579999999999999998888776 6999999999887754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=89.07  E-value=0.25  Score=42.25  Aligned_cols=82  Identities=12%  Similarity=0.004  Sum_probs=59.1

Q ss_pred             ceEEEEcC----CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccC
Q 004918          309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  384 (724)
Q Consensus       309 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  384 (724)
                      ++|+|||+    +..|..+...|.+.||+++.+..++..-                           ......+..++++
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchhh
Confidence            57999998    7889999999999999999998875320                           0012334455555


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       385 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      + ...|+|+.++|  .+...+++++..+.- ..+++.
T Consensus        67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~g-~k~i~~  100 (136)
T d1iuka_          67 LKEPVDILDVFRP--PSALMDHLPEVLALR-PGLVWL  100 (136)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHHC-CSCEEE
T ss_pred             ccCCCceEEEecc--HHHHHHHHHHHHhhC-CCeEEE
Confidence            5 45799999998  777778888866653 345554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.03  E-value=0.36  Score=42.83  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. .|+..|+++++++.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            579999999998888888888886 6777889998877653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.00  E-value=0.091  Score=51.70  Aligned_cols=34  Identities=21%  Similarity=0.110  Sum_probs=31.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      -.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            4699999999999999999999999999999865

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.63  E-value=0.06  Score=44.90  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH---CCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~  342 (724)
                      ++|+|||+|..|.-+|..+.+   .|.+|+++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            689999999999999987655   3889999998764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.62  E-value=0.19  Score=43.77  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV  339 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~  339 (724)
                      ++|.|||+|.+|..-|..|.++|.+|++++.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            7899999999999999999999999999954

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.52  E-value=0.58  Score=39.15  Aligned_cols=37  Identities=14%  Similarity=-0.029  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      |.|.|+|.|.+|..++..|  .|++|+++|.+++..+..
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~   37 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV   37 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence            3588999999999999988  477899999999987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.50  E-value=0.051  Score=45.43  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH---CCCcEEEEeCCHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEYL  344 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~~~  344 (724)
                      ++|+|||+|.+|.-+|..+..   .|.+|+++++.+.-+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            689999999999999976654   456899999876543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.44  E-value=0.94  Score=42.87  Aligned_cols=42  Identities=26%  Similarity=0.253  Sum_probs=32.1

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHH
Q 004918          310 KVAVI--GGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTI  351 (724)
Q Consensus       310 kI~VI--G~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i  351 (724)
                      |+++|  |++-+|.++|..|++.|++|++. +++++.+++..+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~   51 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence            56666  45779999999999999999985 66766666655433

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.99  E-value=0.1  Score=51.91  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHH-----HCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHI-----LNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la-----~~G~~V~l~d~~~~  342 (724)
                      --|.|||+|..|..+|..|+     ++|++|+++|+++.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            45999999999999999997     57999999998753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=0.12  Score=49.18  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCC
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  340 (724)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            489999999999999999999998 89999865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.58  E-value=0.13  Score=51.43  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      -++|.|+|+ |.+|+.++..|.+.||+|++..|+++..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            368999986 9999999999999999999999987654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.55  E-value=0.12  Score=49.09  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=27.9

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       310 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ||.|| |+ +.+|.++|..|++.|++|++.|++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            55555 65 77999999999999999999999764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=87.49  E-value=0.97  Score=42.79  Aligned_cols=91  Identities=15%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCc---cCc
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SEF  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~~  385 (724)
                      ++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++..+.       .+ +.        .++ ...+.   ..-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~-~~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRF-LEGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEE-EESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeE-Eeccccccccc
Confidence            4788899998 4 45667788999999999999999988764432       11 11        011 11111   112


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       386 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      ...|+|+-.+.  .....+++.++...++|+..++
T Consensus       183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            46799987765  6667788888888888877665

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.26  E-value=0.25  Score=44.26  Aligned_cols=98  Identities=11%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             cceEEEEcC-CCCcHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcc-cccCcc-
Q 004918          308 VRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYS-  383 (724)
Q Consensus       308 ~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~-  383 (724)
                      |.||+|||+ |..|.-+.+.|.++- +++..+--+... .+   .+.......              ..... ...+.+ 
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a-G~---~i~~~~p~~--------------~~~~~~~~~~~~~   62 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GK---KLEEIFPST--------------LENSILSEFDPEK   62 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TS---BHHHHCGGG--------------CCCCBCBCCCHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC-CC---cccccCchh--------------hccccccccCHhH
Confidence            569999998 999999999998763 355544322211 11   011100000              01111 112222 


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  430 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~  430 (724)
                      ..+++|+|+.|+|....  +++.    +.. .++.|+++++...+.+
T Consensus        63 ~~~~~dvvf~a~p~~~s--~~~~----~~~-~~~~VIDlSadfRl~~  102 (176)
T d1vkna1          63 VSKNCDVLFTALPAGAS--YDLV----REL-KGVKIIDLGADFRFDD  102 (176)
T ss_dssp             HHHHCSEEEECCSTTHH--HHHH----TTC-CSCEEEESSSTTTCSS
T ss_pred             hccccceEEEccccHHH--HHHH----Hhh-ccceEEecCccccccc
Confidence            23689999999996544  2332    222 5678889999877643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.90  E-value=0.38  Score=44.23  Aligned_cols=39  Identities=15%  Similarity=0.002  Sum_probs=31.7

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEE--EeCCHHHHH
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVL--KEVNSEYLL  345 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l--~d~~~~~~~  345 (724)
                      .|++|.|.|+ |.+|+.++..|++.|++|.+  ..|+++...
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            4789999985 99999999999999987555  457776543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=86.84  E-value=0.14  Score=48.65  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=32.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ..|.|||+|.-|...|..++++|++|+++|+++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45999999999999999999999999999998754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.43  E-value=1.8  Score=41.98  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=28.6

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .|++|| |+ +-+|.++|..|++.|++|++.|++.+
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            377777 44 77999999999999999999987654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.41  E-value=1.1  Score=39.26  Aligned_cols=40  Identities=23%  Similarity=0.157  Sum_probs=33.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~   74 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE   74 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence            579999999999998888876664 7788999999877654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=86.40  E-value=0.71  Score=44.16  Aligned_cols=40  Identities=23%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             EEEE-c-CCCCcHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHH
Q 004918          311 VAVI-G-GGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKT  350 (724)
Q Consensus       311 I~VI-G-~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~  350 (724)
                      |+|| | ++-+|.++|..|++.|++|++.++ +++.+++..+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~   46 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   46 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence            7888 4 477999999999999999998765 45555554443

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.38  E-value=0.39  Score=45.60  Aligned_cols=34  Identities=32%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             EEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          311 VAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       311 I~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      |+|| | ++.+|.++|..|+++|++|++.+++.+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            6666 4 46799999999999999999999986654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=86.22  E-value=0.26  Score=44.19  Aligned_cols=40  Identities=15%  Similarity=-0.071  Sum_probs=34.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  350 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  350 (724)
                      .+|-.||+|. | ..+..|++.|++|+.+|.+++.++.+.++
T Consensus        22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            5899999998 3 57778999999999999999999987654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.22  E-value=0.095  Score=49.70  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             ceEEEE-cC-CCCcHHHHHHHHHCCCcEEEEeCCHHHH
Q 004918          309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYL  344 (724)
Q Consensus       309 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  344 (724)
                      .|+++| |+ +-+|.++|..|++.|++|++.+|+.+..
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            355555 55 6799999999999999999999987653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.91  E-value=0.15  Score=44.77  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      .||.|||+|..|..+|..|++ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999998864 78999998753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=85.48  E-value=0.8  Score=43.37  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=28.3

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  346 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  346 (724)
                      .|-|.|+ +-+|.++|..|++.|.+|++.+++.+..+.
T Consensus         7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~   44 (254)
T d1sbya1           7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA   44 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence            3445555 569999999999999999888776655433

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.38  E-value=0.17  Score=45.84  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=30.7

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      -++|.|||+|.-|.+-|..+++.|.+|+++|...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4789999999999999999999999999998543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.36  E-value=2  Score=39.82  Aligned_cols=92  Identities=20%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccC---
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE---  384 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---  384 (724)
                      ++|-=||+|+ | .++..|++.|.+|+++|.+++.++.+.+....       .+.           ++.+ ..+.+.   
T Consensus        43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~-----------~i~~~~~d~~~l~~  102 (251)
T d1wzna1          43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RNL-----------KIEFLQGDVLEIAF  102 (251)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC-----------CCEEEESCGGGCCC
T ss_pred             CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccc-------ccc-----------cchheehhhhhccc
Confidence            5899999998 4 55677899999999999999998887654321       110           1111 111211   


Q ss_pred             cCCCCEEEEcc----cCChHHHHHHHHHHHhhCCCCcEEE
Q 004918          385 FKDVDMVIEAV----IESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       385 ~~~aDlVIeav----~e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                      -...|+|+.+-    .-+..-.+.+++++..+++|+.+++
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            13568887642    1123445678899999999887665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.17  E-value=0.28  Score=43.76  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            579999999999999999988886 7999999999988764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.15  E-value=0.25  Score=49.51  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +||.|.|+ |.+|+.++..|.+.||+|+++|+..
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            46999975 9999999999999999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.01  E-value=0.18  Score=45.00  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      ++|.|||+|..|..+|..|.+.|.+|+++.+.++
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            6899999999999999999999999888766543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.73  E-value=0.34  Score=42.27  Aligned_cols=93  Identities=16%  Similarity=0.108  Sum_probs=55.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccCccC
Q 004918          310 KVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  384 (724)
Q Consensus       310 kI~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  384 (724)
                      ||||||+ |..|.-+.+.|.++.+   ++....-+... .+           .+...          ...... ......
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~-G~-----------~~~~~----------~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFK----------DQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT-TC-----------EEEET----------TEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc-cc-----------ccccc----------CCcccccccchhh
Confidence            7999999 9999999999988865   34434322111 00           00000          001111 112245


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 004918          385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  429 (724)
Q Consensus       385 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~  429 (724)
                      ..++|+++.+.|  .....+...+.   ...++.|+++++.....
T Consensus        61 ~~~~d~~f~~~~--~~~s~~~~~~~---~~~~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          61 FEGVDIALFSAG--SSTSAKYAPYA---VKAGVVVVDNTSYFRQN  100 (154)
T ss_dssp             TTTCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTTTC
T ss_pred             hhhhhhhhhccC--ccchhhHHhhh---ccccceehhcChhhhcc
Confidence            678999999998  44444443333   34688899998877653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.65  E-value=0.17  Score=47.55  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       310 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      |++|| | ++-+|.++|..|++.|++|++.|++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            56666 4 4889999999999999999999998764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=0.21  Score=45.06  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      -++|.|||+|.-|.+-|..+++.|.+|+++++..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            4689999999999999999999999999998653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.38  E-value=0.2  Score=47.73  Aligned_cols=35  Identities=14%  Similarity=-0.105  Sum_probs=29.9

Q ss_pred             EEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 004918          313 VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  347 (724)
Q Consensus       313 VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  347 (724)
                      |-|+ +.+|.++|..|++.|++|++.|++.+.+++.
T Consensus         5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4455 6699999999999999999999998877654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.90  E-value=0.19  Score=48.11  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      +||-|.|+ |.+|+.++..|.+.||+|+..|+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999997 9999999999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.69  E-value=0.25  Score=44.85  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~  341 (724)
                      +||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4899999999999999999886  45799998764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.46  E-value=0.23  Score=47.83  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHH-CCCcEEEEeCCHH
Q 004918          310 KVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSE  342 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~  342 (724)
                      -|.|||+|.-|...|..|++ .|++|+++|+++.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.45  E-value=0.63  Score=41.23  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             ceEEEEcCC-CCcHHHHHHHHHCCCcEEEEeCC
Q 004918          309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVN  340 (724)
Q Consensus       309 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~  340 (724)
                      ++|.|||-+ ..|.++|..|++.|..|+.++.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            689999975 56999999999999999999865

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.34  E-value=0.28  Score=47.84  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      -|.|||+|.-|.+.|..+++.|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            49999999999999999999999999999764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.33  E-value=0.6  Score=42.38  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  348 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  348 (724)
                      .+|.|+|+|.+|...++.+...|. .|++.|.++++++.+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~   67 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK   67 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence            579999999999888877767776 7899999999988764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.30  E-value=0.88  Score=40.74  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHC-CCcEEEEe
Q 004918          309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKE  338 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d  338 (724)
                      -||+|||+ |..|.-+.+.|.++ .+++....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            47999998 99999999999886 34655553

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.46  Score=44.18  Aligned_cols=109  Identities=7%  Similarity=-0.112  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHH-HHhhcCccc-ccCc----
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKG-VLDY----  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~-~~~~~~i~~-~~~~----  382 (724)
                      .+|-.+|+|.  +..+..|++.|++|+.+|.+++.++.+.++........ ....+..... .....++.+ ..|.    
T Consensus        47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEE-PITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEE-ECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcccccc-chhcccccceeeecCCcEEEEEcchhhcc
Confidence            4799999999  46688899999999999999999887654321100000 0000000000 000011111 1111    


Q ss_pred             -cCcCCCCEEEEccc---CChHHHHHHHHHHHhhCCCCcEEE
Q 004918          383 -SEFKDVDMVIEAVI---ESVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       383 -~~~~~aDlVIeav~---e~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                       ......|+|+.+..   -..+....+++++...++|+..++
T Consensus       124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~  165 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL  165 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence             12234677775531   124566788889999999987543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.39  Score=49.41  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCC-cEEEEeCCH
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  341 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  341 (724)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            489999999999999999999998 899999653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.73  E-value=0.26  Score=46.23  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      .||-|.|+ +.+|.++|..|++.|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            58888877 89999999999999999999999865

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.65  E-value=0.3  Score=44.83  Aligned_cols=30  Identities=23%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCC
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVN  340 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~  340 (724)
                      |.|||+|.-|...|..+++.|.+|++++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            899999999999999999999999999986

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.65  E-value=0.33  Score=48.18  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      +||-|.|+ |.+|+.++..|.+.|++|+++||+...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            78999985 999999999999999999999998654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.51  E-value=0.75  Score=37.97  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CcceEEEEcCCCC-----------cHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          307 GVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       307 ~~~kI~VIG~G~m-----------G~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ..+||-|||+|..           +...+..|.+.|+++++++-||+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            4589999999975           667788889999999999999985

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.39  E-value=1.8  Score=38.51  Aligned_cols=93  Identities=14%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc----c
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----S  383 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~  383 (724)
                      .+|.=||+|.=.  ++..+++.+.+|+.+|++++.++.+.+.+++.       |. +        .++... .+.    .
T Consensus        35 ~~VLDiGcGsG~--~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~-------gl-~--------~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          35 DVAVDVGCGTGG--VTLELAGRVRRVYAIDRNPEAISTTEMNLQRH-------GL-G--------DNVTLMEGDAPEALC   96 (186)
T ss_dssp             CEEEEESCTTSH--HHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT-------TC-C--------TTEEEEESCHHHHHT
T ss_pred             CEEEEEECCeEc--ccccccccceEEEEecCCHHHHHHHHHHHHHc-------CC-C--------cceEEEECchhhccc
Confidence            468888998844  44456777889999999999999887654331       11 0        122211 111    2


Q ss_pred             CcCCCCEEEEcccCChHHHHHHHHHHHhhCCCCcEEEe
Q 004918          384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  421 (724)
Q Consensus       384 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~ii~s  421 (724)
                      .....|+|+...+  .....++++.+.+.++++..++.
T Consensus        97 ~~~~~D~v~~~~~--~~~~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_          97 KIPDIDIAVVGGS--GGELQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             TSCCEEEEEESCC--TTCHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcCEEEEeCc--cccchHHHHHHHHHhCcCCEEEE
Confidence            3467899987654  34446788888888888776543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.06  E-value=0.5  Score=39.54  Aligned_cols=38  Identities=16%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             CCcceEEEEcCCCC-----------cHHHHHHHHHCCCcEEEEeCCHHH
Q 004918          306 RGVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY  343 (724)
Q Consensus       306 ~~~~kI~VIG~G~m-----------G~~iA~~la~~G~~V~l~d~~~~~  343 (724)
                      ..++||.|||+|..           +...+..|.+.|+++++++-||+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            35799999999975           677778889999999999999985

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.70  E-value=0.87  Score=44.06  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             cceEEEEcCCCCcHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCccc-ccC-c-
Q 004918          308 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD-Y-  382 (724)
Q Consensus       308 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-~-  382 (724)
                      .+||.|||+|.-  +++..+.+. +. +|+++|++++.++.+++..... ....+..            +++. ..| . 
T Consensus        81 pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~-~~~~~~~------------r~~i~~~Da~~  145 (290)
T d1xj5a_          81 PKKVLVIGGGDG--GVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV-AIGYEDP------------RVNLVIGDGVA  145 (290)
T ss_dssp             CCEEEEETCSSS--HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGST------------TEEEEESCHHH
T ss_pred             CcceEEecCCch--HHHHHHHhcccceeeEEecCCHHHHHHHHHhchhh-hccccCC------------CcEEEEccHHH
Confidence            378999999974  455556654 43 7999999999998876644322 1111111            1111 111 0 


Q ss_pred             --cCc--CCCCEEEEcccCC-----hHHHHHHHHHHHhhCCCCcEEEecCCC
Q 004918          383 --SEF--KDVDMVIEAVIES-----VPLKQKIFSELEKACPPHCILATNTST  425 (724)
Q Consensus       383 --~~~--~~aDlVIeav~e~-----~~~k~~v~~~l~~~~~~~~ii~s~ts~  425 (724)
                        ...  +.-|+||.-+++.     .-..+++|+.+.+.++++.+++.++.+
T Consensus       146 ~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         146 FLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             HHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence              111  2469888666532     224568889999999999999887654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=81.61  E-value=0.86  Score=42.80  Aligned_cols=30  Identities=23%  Similarity=0.104  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEe
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKE  338 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d  338 (724)
                      ++|+|-|.|.+|...|..|.+.|..|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            689999999999999999999999987654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.42  Score=47.28  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  339 (724)
                      +||-|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999976 99999999999999999999984

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.56  E-value=0.35  Score=44.68  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHH
Q 004918          311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  342 (724)
Q Consensus       311 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  342 (724)
                      |+|||+|.-|..-|..+++.|++|+++|..+.
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            89999999999999999999999999997643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=0.41  Score=46.79  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=29.0

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  339 (724)
                      +||.|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999977 99999999999999999999986

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=81.21  E-value=0.42  Score=47.25  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=28.6

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004918          309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (724)
Q Consensus       309 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  339 (724)
                      +||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            46999977 99999999999999999999986

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.95  E-value=2.4  Score=38.25  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccccCccCc---
Q 004918          309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF---  385 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---  385 (724)
                      .||-=||+|.  +.++..+++.|.+|+.+|.+++.++.+.+...+       .+.          .......+.+.+   
T Consensus        39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~-------~~~----------~~~~~~~d~~~l~~~   99 (226)
T d1ve3a1          39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKS-------RES----------NVEFIVGDARKLSFE   99 (226)
T ss_dssp             CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC----------CCEEEECCTTSCCSC
T ss_pred             CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhcc-------ccc----------ccccccccccccccc
Confidence            4799999998  446778899999999999999998887654322       110          000011122111   


Q ss_pred             -CCCCEEEEcc-cC--ChHHHHHHHHHHHhhCCCCcEEE
Q 004918          386 -KDVDMVIEAV-IE--SVPLKQKIFSELEKACPPHCILA  420 (724)
Q Consensus       386 -~~aDlVIeav-~e--~~~~k~~v~~~l~~~~~~~~ii~  420 (724)
                       ...|+|+..- .+  ...-...+++++..+++|+..++
T Consensus       100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  138 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI  138 (226)
T ss_dssp             TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEE
Confidence             3457776432 11  12234568899999999987554

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=80.82  E-value=0.42  Score=44.28  Aligned_cols=32  Identities=31%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCcEEEEeCCH
Q 004918          310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  341 (724)
Q Consensus       310 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  341 (724)
                      -|.|||+|.-|.+-|..+++.|++|++++.++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38999999999999999999999999999765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=80.58  E-value=0.58  Score=45.92  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHhhcCcccc-cCc---
Q 004918          309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY---  382 (724)
Q Consensus       309 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  382 (724)
                      ++|.|||+|.-  +++..+++.  ..+|++++++++.++.+.+.+........+..            +++.. .|.   
T Consensus        79 k~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~------------rv~i~~~Da~~~  144 (312)
T d1uira_          79 KRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDP------------RAVLVIDDARAY  144 (312)
T ss_dssp             CEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCT------------TEEEEESCHHHH
T ss_pred             ceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCC------------ceEEEEchHHHH
Confidence            68999999963  444555544  34899999999999887654432211111111            11111 111   


Q ss_pred             --cCcCCCCEEEEcccCC-----h---HHHHHHHHHHHhhCCCCcEEEecC
Q 004918          383 --SEFKDVDMVIEAVIES-----V---PLKQKIFSELEKACPPHCILATNT  423 (724)
Q Consensus       383 --~~~~~aDlVIeav~e~-----~---~~k~~v~~~l~~~~~~~~ii~s~t  423 (724)
                        +.-+.-|+||.-+++.     +   -..+++++.+.+.++++.+++.++
T Consensus       145 l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         145 LERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             HHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence              1113478998665431     1   124688899999999999887654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.16  E-value=0.3  Score=48.55  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             CcceEEEEcC-CCCcHHHHHHHHHCCCcEEEEeC
Q 004918          307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  339 (724)
Q Consensus       307 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  339 (724)
                      +|+||-|.|+ |.+|+.++..|.++|++|.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            4789999985 99999999999999998766654

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.01  E-value=3.7  Score=40.83  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEE-
Q 004918           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-  105 (724)
Q Consensus        27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-  105 (724)
                      .+.++-...-.+++..+.+..++-+|+|.-. +.|+.|-+-.          .....+.+..++ .++.++..|+|..| 
T Consensus       109 v~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E----------~~gilr~GA~iv-~A~~~~~vP~i~vI~  176 (404)
T d1uyra2         109 VWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDM----------FNEVLKYGSFIV-DALVDYKQPIIIYIP  176 (404)
T ss_dssp             CBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC----------------CTHHHHHHHHH-HHHHTCCSCEEEEEC
T ss_pred             ccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHH----------HHHHHHHHHHHH-HHHHhcCCCEEEEEe
Confidence            5667778888888877765556777777543 4587776521          223445666667 77999999999999 


Q ss_pred             -CccccchhHHHHh---hcCEEEEeCCceeeCcccccCccCCcchhhhh
Q 004918          106 -EGLALGGGLELAM---GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL  150 (724)
Q Consensus       106 -~G~a~GgG~~lal---acD~ria~~~a~f~~pe~~~G~~P~~g~~~~l  150 (724)
                       .|.+.||....+-   ..|..     ..|+.|....|.++.-|+....
T Consensus       177 ~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         177 PTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             TTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHH
T ss_pred             CCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhhe
Confidence             6766665544332   11211     1244455555566655654433