Citrus Sinensis ID: 004951

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720--

MEEDLLVSGEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERRRRVGTKTRSQKVDVLLHHMLSAELQKSCDS

cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccEEEEEEHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHccccc

ccHHHcccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccHEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHcHHHcccHHccccccccccccccccccHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccc

MEEDLLVSgeasgnnrnndnnrrrrgptalfrrrtdaitrgspyQKAAALVDLaedgiglpeeildrssfessAKFYFIFIKFDYIWSLNYFALIVLNFLEKplwcaktgvgtyscydreyyylgqlpyltgweSLVYEGITLVILIIHTffpityegspifwkSTYTRLKVLCLLILVADFLVYGlylspiafnflplriapyIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFttsnnpdvwipaykasrWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKafnlidnynvgflNKEQCIKLFEELNkyrtlpnisreEFELIFDElddthdfkINLDEFADLCNAIALRfqkedvpscfenlpsiyhspfSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENywrdgqnrFDFLVTWVIVIGETitlaspngqtflsnGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLipslmpylgtIFCVQCIYCSLGVQIFGGivnagnakleetdladddyllfnfndypngMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMelessekceeedkdgeprerrrrvgtktrSQKVDVLLHHMLSAELQKSCDS

meedllvsgeasgnnrnndnnrrrrgptalfrrrtdaitrgspyqKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKafnlidnynvgFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETItlaspngqtflsNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMelessekceeedkdgeprerrrrvgtktrsqkvdVLLHHmlsaelqkscds

MEEDLLVSGEASGnnrnndnnrrrrGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAkfyfifikfdyiWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISReefelifdelddTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMisiilivnlvavivETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIrylllarmlrlirllMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYlitvllllnlviafvlEAFFAemelessekceeedkdgeprerrrrvgtktrSQKVDVLLHHMLSAELQKSCDS

*******************************************YQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV****RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAE****************************************************

*******************************************YQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV*****MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFE****************DEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA*****************************************************

********************************RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIK*********************************I*LDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEP******************L*******E*******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		722	2.2.26 [Sep-21-2011]
Q94KI8		733	Two pore calcium channel	yes	no	0.945	0.931	0.716	0.0
Q75VR1		735	Two pore calcium channel	N/A	no	0.980	0.963	0.691	0.0
Q75VR0		735	Two pore calcium channel	N/A	no	0.981	0.964	0.691	0.0
Q5QM84		757	Two pore calcium channel	yes	no	0.941	0.898	0.620	0.0
Q6YLX9		742	Two pore calcium channel	N/A	no	0.984	0.958	0.585	0.0
Q6S5H8		742	Two pore calcium channel	N/A	no	0.984	0.958	0.585	0.0
Q9ULQ1		816	Two pore calcium channel	yes	no	0.592	0.524	0.282	2e-38
Q9WTN5		817	Two pore calcium channel	yes	no	0.591	0.522	0.277	4e-38
Q9EQJ0		817	Two pore calcium channel	yes	no	0.585	0.517	0.277	2e-37
Q8BWC0		731	Two pore calcium channel	no	no	0.567	0.560	0.257	5e-35

>sp\|Q94KI8\|TPC1_ARATH Two pore calcium channel protein 1 OS=Arabidopsis thaliana GN=TPC1 PE=1 SV=1	Back alignment and function desciption

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/709 (71%), Positives = 585/709 (82%), Gaps = 26/709 (3%)

Query: 33  RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYF 92
           RR++AIT G+P+QKAAALVDLAEDGIGLP EILD+SSF  SA++YFIF + D IWSLNYF
Sbjct: 20  RRSEAITHGTPFQKAAALVDLAEDGIGLPVEILDQSSFGESARYYFIFTRLDLIWSLNYF 79

Query: 93  ALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFF 152
           AL+ LNF E+PLWC K      SC DR+YYYLG+LPYLT  ES++YE ITL IL++HTFF
Sbjct: 80  ALLFLNFFEQPLWCEKNP--KPSCKDRDYYYLGELPYLTNAESIIYEVITLAILLVHTFF 137

Query: 153 PITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFIL 212
           PI+YEGS IFW S    +KV C++IL  D LV  LYLSP+AF+FLP RIAPY+RV+ FIL
Sbjct: 138 PISYEGSRIFWTSRLNLVKVACVVILFVDVLVDFLYLSPLAFDFLPFRIAPYVRVIIFIL 197

Query: 213 NIRQLRDTLFVLAGMLGTYLNVL-----------------------GNMVFTSFGTTLYQ 249
           +IR+LRDTL +L+GMLGTYLN+L                       G  VFTS+G TLYQ
Sbjct: 198 SIRELRDTLVLLSGMLGTYLNILALWMLFLLFASWIAFVMFEDTQQGLTVFTSYGATLYQ 257

Query: 250 MFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 309
           MF+LFTTSNNPDVWIPAYK+SRW  +FFVLYVLIGVYFVTNLILAVVYDSFK QLAKQVS
Sbjct: 258 MFILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAVVYDSFKEQLAKQVS 317

Query: 310 EMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDD 369
            MD+M+RR L KAF LID+   G ++K QCIKLFE+L  YRTLP IS+EEF LIFDELDD
Sbjct: 318 GMDQMKRRMLEKAFGLIDSDKNGEIDKNQCIKLFEQLTNYRTLPKISKEEFGLIFDELDD 377

Query: 370 THDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMIS 429
           T DFKIN DEFADLC AIALRFQKE+VPS FE+ P IYHS  S++L+AF+RS  FGY IS
Sbjct: 378 TRDFKINKDEFADLCQAIALRFQKEEVPSLFEHFPQIYHSALSQQLRAFVRSPNFGYAIS 437

Query: 430 IILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQN 489
            ILI+N +AV+VETTLDI+ESS Q  WQ  EFVFGWIYVLEMALKIY+YGFENYWR+G N
Sbjct: 438 FILIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTYGFENYWREGAN 497

Query: 490 RFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVAT 549
           RFDFLVTWVIVIGET T  +P+  TF SNGEWIRYLLLARMLRLIRLLM+VQ+YR F+AT
Sbjct: 498 RFDFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLMNVQRYRAFIAT 557

Query: 550 FLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYP 609
           F+TLIPSLMPYLGTIFCV CIYCS+GVQ+FGG+VNAGN KL ET+LA+DDYLLFNFNDYP
Sbjct: 558 FITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETELAEDDYLLFNFNDYP 617

Query: 610 NGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 669
           NGMVTLFNLLVMGNWQVWM+SYK+LTGT W++ YFVSFY+IT+LLLLNLV+AFVLEAFF 
Sbjct: 618 NGMVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVSFYVITILLLLNLVVAFVLEAFFT 677

Query: 670 EMELESSEKCEEEDKDGEPRERRRRVGTKTRSQKVDVLLHHMLSAELQK 718
           E++LE  EKC+ +D   E R RRR  G+K+RSQ+VD LLHHML  EL K
Sbjct: 678 ELDLEEEEKCQGQDSQ-EKRNRRRSAGSKSRSQRVDTLLHHMLGDELSK 725

Functions as a voltage-gated inward-rectifying Ca(2+) channel (VDCC) across the vacuole membrane. Is one of the essential components of the slow vacuolar (SV) channel. Acts as the major ROS-responsive Ca(2+) channel and is the possible target of Al-dependent inhibition. Involved in the regulation of germination and stomatal movement.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q75VR1\|TPC1A_TOBAC Two pore calcium channel protein 1A OS=Nicotiana tabacum GN=TPC1A PE=2 SV=1	Back alignment and function description

>sp\|Q75VR0\|TPC1B_TOBAC Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1	Back alignment and function description

>sp\|Q5QM84\|TPC1_ORYSJ Two pore calcium channel protein 1 OS=Oryza sativa subsp. japonica GN=TPC1 PE=1 SV=2	Back alignment and function description

>sp\|Q6YLX9\|TPC1_WHEAT Two pore calcium channel protein 1 OS=Triticum aestivum GN=TPC1 PE=2 SV=1	Back alignment and function description

>sp\|Q6S5H8\|TPC1_HORVU Two pore calcium channel protein 1 OS=Hordeum vulgare GN=TPC1 PE=2 SV=1	Back alignment and function description

>sp\|Q9ULQ1\|TPC1_HUMAN Two pore calcium channel protein 1 OS=Homo sapiens GN=TPCN1 PE=1 SV=3	Back alignment and function description

>sp\|Q9WTN5\|TPC1_RAT Two pore calcium channel protein 1 OS=Rattus norvegicus GN=Tpcn1 PE=1 SV=2	Back alignment and function description

>sp\|Q9EQJ0\|TPC1_MOUSE Two pore calcium channel protein 1 OS=Mus musculus GN=Tpcn1 PE=2 SV=1	Back alignment and function description

>sp\|Q8BWC0\|TPC2_MOUSE Two pore calcium channel protein 2 OS=Mus musculus GN=Tpcn2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		722
302143292		732	unnamed protein product [Vitis vinifera]	0.973	0.960	0.719	0.0
449438094		738	PREDICTED: two pore calcium channel prot	0.943	0.922	0.732	0.0
255553747		743	Voltage-dependent L-type calcium channel	0.929	0.903	0.753	0.0
18412295		733	two pore calcium channel protein 1 [Arab	0.945	0.931	0.716	0.0
14041819		733	two-pore calcium channel [Arabidopsis th	0.945	0.931	0.712	0.0
224121708		726	predicted protein [Populus trichocarpa]	0.963	0.958	0.729	0.0
75326539		735	RecName: Full=Two pore calcium channel p	0.980	0.963	0.691	0.0
297813953		732	two-pore channel 1 [Arabidopsis lyrata s	0.962	0.949	0.711	0.0
75326538		735	RecName: Full=Two pore calcium channel p	0.981	0.964	0.691	0.0
4206210		724	putative calcium channel [Arabidopsis th	0.922	0.919	0.690	0.0

>gi\|302143292\|emb\|CBI21853.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/737 (71%), Positives = 615/737 (83%), Gaps = 34/737 (4%)

Query: 6   LVSGEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEIL 65
           L+ GE+SG         RRRG T +F RR+DAI  GSPYQKAAALVDLAEDGIGLPE++L
Sbjct: 5   LLDGESSGG--------RRRGQTPVFHRRSDAIAYGSPYQKAAALVDLAEDGIGLPEQML 56

Query: 66  DRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLG 125
           D+ SFES+AKFYFIFI+F+++WSLN FALIVLNFLEKPLWCAK    TYSC DREYY+LG
Sbjct: 57  DQESFESAAKFYFIFIRFNFLWSLNLFALIVLNFLEKPLWCAKQT--TYSCNDREYYFLG 114

Query: 126 QLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVY 185
           QLPYLT  ESL+YEGITLVI+++HTFFPI+YEGS I+WK+   RLKV+ L ILVAD LVY
Sbjct: 115 QLPYLTSVESLIYEGITLVIILLHTFFPISYEGSQIYWKNPLNRLKVILLSILVADLLVY 174

Query: 186 GLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL---------- 235
            LYLSP+ F +LP R+APYIRV+  ILNIR++R T+ +LAGMLGTYLN++          
Sbjct: 175 VLYLSPLPFYYLPFRLAPYIRVILCILNIREVRATMVILAGMLGTYLNIMALGLLFLLFA 234

Query: 236 -------------GNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVL 282
                        G  VFTS+ TTLYQMF+LFTTSNNPDVWIPAYK SRWYCLFFVLY+L
Sbjct: 235 SWVAYVMFEDTQQGKTVFTSYLTTLYQMFILFTTSNNPDVWIPAYKVSRWYCLFFVLYML 294

Query: 283 IGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKL 342
           +GVYF+TNLILAV+YDSFK+QLAKQV+EMDRMRRR L KAFNLID  N+GFL KEQCI L
Sbjct: 295 LGVYFMTNLILAVIYDSFKNQLAKQVAEMDRMRRRILEKAFNLIDKSNLGFLKKEQCIHL 354

Query: 343 FEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFEN 402
           FEELNKYR+LP ISRE+FELIFDELDD++DFKINLDEF DLCNAI L FQKED  S FE 
Sbjct: 355 FEELNKYRSLPKISREDFELIFDELDDSNDFKINLDEFFDLCNAITLSFQKEDSQSWFER 414

Query: 403 LPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFV 462
            PS YHSP  EKLKAF+RS+ FG MI++IL++NLVAVI+ETTLDI+ +S Q VWQ+VEFV
Sbjct: 415 YPSFYHSPACEKLKAFVRSSIFGNMIAVILVLNLVAVIIETTLDIENNSAQKVWQKVEFV 474

Query: 463 FGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWI 522
            GWIYVLEMALK++++GF+NYWRD  NRFDF +TW+IVIGET T  +P+  +FLSNGEWI
Sbjct: 475 LGWIYVLEMALKVFAFGFKNYWRDDSNRFDFFITWIIVIGETATFVAPSSLSFLSNGEWI 534

Query: 523 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGI 582
           RYLLLARMLRLIRLLM V+QYR F+ATFL LIPSLMPYLGTIFCV CIYCSLGVQIFGGI
Sbjct: 535 RYLLLARMLRLIRLLMRVKQYRAFIATFLNLIPSLMPYLGTIFCVLCIYCSLGVQIFGGI 594

Query: 583 VNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLA 642
           VN GN+ LE TDL + DYLLFNFNDYPNGMVTLFNLLVM NWQVWMQSYK+LTGT+WTL 
Sbjct: 595 VNNGNSNLEGTDLEESDYLLFNFNDYPNGMVTLFNLLVMNNWQVWMQSYKDLTGTSWTLV 654

Query: 643 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERRRRVGTKTRSQ 702
           YF+S+YL+TVLLLLNLV+AFVLEAFFAEM+LE SE C E+ K+   ++ RR   ++ RSQ
Sbjct: 655 YFISYYLLTVLLLLNLVVAFVLEAFFAEMDLEKSENCGEDGKEAGEKQ-RRYTRSRIRSQ 713

Query: 703 KVDVLLHHMLSAELQKS 719
           +VD+LLHHMLSAEL ++
Sbjct: 714 RVDILLHHMLSAELNQT 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449438094\|ref\|XP_004136825.1\| PREDICTED: two pore calcium channel protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255553747\|ref\|XP_002517914.1\| Voltage-dependent L-type calcium channel, putative [Ricinus communis] gi\|223542896\|gb\|EEF44432.1\| Voltage-dependent L-type calcium channel, putative [Ricinus communis]	Back alignment and taxonomy information

>gi|18412295|ref|NP_567258.1| two pore calcium channel protein 1 [Arabidopsis thaliana] gi|75166464|sp|Q94KI8.1|TPC1_ARATH RecName: Full=Two pore calcium channel protein 1; AltName: Full=Calcium channel protein 1; Short=AtCCH1; AltName: Full=Fatty acid oxygenation up-regulated protein 2; AltName: Full=Voltage-dependent calcium channel protein TPC1; Short=AtTPC1 gi|13786069|gb|AAK39554.1|AF360372_1 putative calcium channel [Arabidopsis thaliana] gi|222422931|dbj|BAH19452.1| AT4G03560 [Arabidopsis thaliana] gi|332656937|gb|AEE82337.1| two pore calcium channel protein 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|14041819\|dbj\|BAB55460.1\| two-pore calcium channel [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224121708\|ref\|XP_002330633.1\| predicted protein [Populus trichocarpa] gi\|222872237\|gb\|EEF09368.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|75326539\|sp\|Q75VR1.1\|TCP1A_TOBAC RecName: Full=Two pore calcium channel protein 1A; AltName: Full=Voltage-dependent calcium channel protein TPC1A; Short=NtTPC1A gi\|46275792\|dbj\|BAD15099.1\| two-pore calcium channel [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|297813953\|ref\|XP_002874860.1\| two-pore channel 1 [Arabidopsis lyrata subsp. lyrata] gi\|297320697\|gb\|EFH51119.1\| two-pore channel 1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|75326538\|sp\|Q75VR0.1\|TPC1B_TOBAC RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B gi\|46275794\|dbj\|BAD15100.1\| two-pore calcium channel [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|4206210\|gb\|AAD11598.1\| putative calcium channel [Arabidopsis thaliana] gi\|4263043\|gb\|AAD15312.1\| putative calcium channel [Arabidopsis thaliana] gi\|7270679\|emb\|CAB77841.1\| putative calcium channel [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		722
TAIR\|locus:2128716		733	TPC1 "two-pore channel 1" [Ara	0.673	0.663	0.631	6.5e-234
UNIPROTKB\|J9JHA5		773	TPC3 "Uncharacterized protein"	0.620	0.579	0.25	7.5e-33
UNIPROTKB\|C4IXV8		768	TPC3 "Uncharacterized protein"	0.617	0.580	0.234	5.3e-31
UNIPROTKB\|E2QYG4		751	TPCN2 "Uncharacterized protein	0.552	0.531	0.263	1.3e-30
UNIPROTKB\|Q8NHX9		752	TPCN2 "Two pore calcium channe	0.551	0.529	0.257	9e-28
UNIPROTKB\|F1RY74		502	TPCN2 "Uncharacterized protein	0.544	0.782	0.266	2.8e-27
ZFIN\|ZDB-GENE-060526-199		805	tpcn1 "two pore segment channe	0.614	0.551	0.254	1.4e-25
RGD\|1311779		730	Tpcn2 "two pore segment channe	0.552	0.546	0.256	2.5e-25
UNIPROTKB\|F1MSJ0		793	TPCN1 "Uncharacterized protein	0.560	0.510	0.26	4.8e-25
UNIPROTKB\|B7Z3R2		748	TPCN1 "Two pore calcium channe	0.563	0.544	0.263	7e-25

TAIR\|locus:2128716 TPC1 "two-pore channel 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1582 (562.0 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
 Identities = 308/488 (63%), Positives = 345/488 (70%)

Query:   236 GNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAV 295
             G  VFTS+G TLYQMF+LFTTSNNPDVWIPAYK+SRW  +FFVLYVLIGVYFVTNLILAV
Sbjct:   244 GLTVFTSYGATLYQMFILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAV 303

Query:   296 VYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNI 355
             VYDSFK QLAKQVS MD+M+RR L KAF LID+   G ++K QCIKLFE+L  YRTLP I
Sbjct:   304 VYDSFKEQLAKQVSGMDQMKRRMLEKAFGLIDSDKNGEIDKNQCIKLFEQLTNYRTLPKI 363

Query:   356 SRXXXXXXXXXXXXTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKL 415
             S+            T DFKIN DEFADLC AIALRFQKE+VPS FE+ P IYHS  S++L
Sbjct:   364 SKEEFGLIFDELDDTRDFKINKDEFADLCQAIALRFQKEEVPSLFEHFPQIYHSALSQQL 423

Query:   416 KAFIRSTKFGYMXXXXXXXXXXXXXXETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKI 475
             +AF+RS  FGY               ETTLDI+ESS Q  WQ  EFVFGWIYVLEMALKI
Sbjct:   424 RAFVRSPNFGYAISFILIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKI 483

Query:   476 YSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIXXXXXXXXXXXXX 535
             Y+YGFENYWR+G NRFDFLVTWVIVIGET T  +P+  TF SNGEWI             
Sbjct:   484 YTYGFENYWREGANRFDFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIR 543

Query:   536 XXMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDL 595
               M+VQ+YR F+ATF+TLIPSLMPYLGTIFCV CIYCS+GVQ+FGG+VNAGN KL ET+L
Sbjct:   544 LLMNVQRYRAFIATFITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETEL 603

Query:   596 ADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYXXXXXXX 655
             A+DDYLLFNFNDYPNGMVTLFNLLVMGNWQVWM+SYK+LTGT W++ YFVSFY       
Sbjct:   604 AEDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVSFYVITILLL 663

Query:   656 XXXXXXXXXEAFFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQKVDVLLHHMLSAE 715
                      EAFF                                SQ+VD LLHHML  E
Sbjct:   664 LNLVVAFVLEAFFTELDLEEEEKCQGQDSQEKRNRRRSAGSKSR-SQRVDTLLHHMLGDE 722

Query:   716 LQK-SCDS 722
             L K  C +
Sbjct:   723 LSKPECST 730

GO:0005216 "ion channel activity" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IGI;ISS;IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IGI;ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006816 "calcium ion transport" evidence=IC;RCA;IMP

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009845 "seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0080141 "regulation of jasmonic acid biosynthetic process" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB\|J9JHA5 TPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|C4IXV8 TPC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QYG4 TPCN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8NHX9 TPCN2 "Two pore calcium channel protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RY74 TPCN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060526-199 tpcn1 "two pore segment channel 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1311779 Tpcn2 "two pore segment channel 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MSJ0 TPCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B7Z3R2 TPCN1 "Two pore calcium channel protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75VR0	TPC1B_TOBAC	No assigned EC number	0.6917	0.9819	0.9646	N/A	no
Q75VR1	TPC1A_TOBAC	No assigned EC number	0.6913	0.9806	0.9632	N/A	no
Q6YLX9	TPC1_WHEAT	No assigned EC number	0.5852	0.9847	0.9582	N/A	no
Q5QM84	TPC1_ORYSJ	No assigned EC number	0.6207	0.9418	0.8982	yes	no
Q94KI8	TPC1_ARATH	No assigned EC number	0.7165	0.9459	0.9317	yes	no
Q6S5H8	TPC1_HORVU	No assigned EC number	0.5852	0.9847	0.9582	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATTPC1	ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel; Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress. ; Functions as a voltage- [...] (733 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATCNGC11	ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleo [...] (621 aa)			•	0.649
	ATPCS2	ATPCS2 (phytochelatin synthase 2); glutathione gamma-glutamylcysteinyltransferase; Encodes a pr [...] (452 aa)			•	0.623
	CER5	CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances; Encodes an ABC tr [...] (687 aa)		•	•	0.616
	AT2G31800	ankyrin protein kinase, putative; ankyrin protein kinase, putative; FUNCTIONS IN- protein serin [...] (476 aa)			•	0.534
	ATKCO1	ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel; [...] (363 aa)			•	0.534
	AT3G50770	calmodulin-related protein, putative; calmodulin-related protein, putative; FUNCTIONS IN- calci [...] (205 aa)			•	0.508
	AT3G13330	binding; binding; FUNCTIONS IN- binding; LOCATED IN- cellular_component unknown; EXPRESSED IN- [...] (1781 aa)			•	0.467
	AT4G02480	AAA-type ATPase family protein; AAA-type ATPase family protein; FUNCTIONS IN- nucleoside-tripho [...] (1265 aa)	•			0.458
	CAX1	CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium-cation antiporter/ ca [...] (475 aa)			•	0.439
	AOS	AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding; Encodes a memb [...] (518 aa)			•	0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		722
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	2e-24
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	1e-05
pfam13499		60	pfam13499, EF_hand_5, EF-hand domain pair	7e-05
cd00051		63	cd00051, EFh, EF-hand, calcium binding motif; A di	0.001
PLN03223		1634	PLN03223, PLN03223, Polycystin cation channel prot	0.002

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

 Score =  101 bits (253), Expect = 2e-24
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 14/206 (6%)

Query: 459 VEFVFGWIYVLEMALKIYSYGFE-NYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLS 517
           +++VF  I+ LEM LK  + GF+  Y+R   N  DFLV    ++   + L          
Sbjct: 2   LDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFL-------LGE 54

Query: 518 NGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQ 577
           +   +R L L R+LRL+RLL      R  + +    + SL+  L  +  +  I+  +GVQ
Sbjct: 55  DSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQ 114

Query: 578 IFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT 637
           +FG     G          +      NF+ Y   ++ LF  L    W   M       GT
Sbjct: 115 LFG-----GELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLV-PGT 168

Query: 638 AWTLAYFVSFYLITVLLLLNLVIAFV 663
                +FV F ++  +LLLNL+I  +
Sbjct: 169 VLGKIFFVIFIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

>gnl\|CDD\|222177 pfam13499, EF_hand_5, EF-hand domain pair	Back alignment and domain information

>gnl\|CDD\|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	Back alignment and domain information

>gnl\|CDD\|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		722
KOG2301		1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	100.0
KOG2302		1956	consensus T-type voltage-gated Ca2+ channel, pore-	100.0
KOG2301		1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	100.0
KOG2302		1956	consensus T-type voltage-gated Ca2+ channel, pore-	100.0
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.87
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.85
PLN03223		1634	Polycystin cation channel protein; Provisional	99.81
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	99.7
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.69
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.67
PLN03223		1634	Polycystin cation channel protein; Provisional	99.49
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	99.48
KOG3599		798	consensus Ca2+-modulated nonselective cation chann	99.46
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	99.4
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	99.27
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.19
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	98.95
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	98.95
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	98.9
KOG3599		798	consensus Ca2+-modulated nonselective cation chann	98.77
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	98.66
TIGR00870		743	trp transient-receptor-potential calcium channel p	98.4
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	98.33
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.01
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	97.66
KOG0510		929	consensus Ankyrin repeat protein [General function	97.47
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	97.46
KOG3733		566	consensus Mucolipidin and related proteins (TRML s	97.28
KOG3614		1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	97.14
PLN03192		823	Voltage-dependent potassium channel; Provisional	97.14
KOG0498		727	consensus K+-channel ERG and related proteins, con	96.86
KOG0510		929	consensus Ankyrin repeat protein [General function	96.64
KOG3614		1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	95.72
KOG3533		2706	consensus Inositol 1,4,5-trisphosphate receptor [S	95.58
KOG3733		566	consensus Mucolipidin and related proteins (TRML s	94.18
PF13499		66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	92.44
cd00213		88	S-100 S-100: S-100 domain, which represents the la	92.29
KOG0498		727	consensus K+-channel ERG and related proteins, con	92.26
cd05022		89	S-100A13 S-100A13: S-100A13 domain found in protei	92.07
smart00027		96	EH Eps15 homology domain. Pair of EF hand motifs t	89.88
PRK10537		393	voltage-gated potassium channel; Provisional	89.73
cd05027		88	S-100B S-100B: S-100B domain found in proteins sim	89.72
COG5126		160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	88.61
cd00052		67	EH Eps15 homology domain; found in proteins implic	88.24
KOG1420		1103	consensus Ca2+-activated K+ channel Slowpoke, alph	88.11
cd05026		93	S-100Z S-100Z: S-100Z domain found in proteins sim	87.97
cd05025		92	S-100A1 S-100A1: S-100A1 domain found in proteins	87.8
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	87.39
cd05031		94	S-100A10_like S-100A10_like: S-100A10 domain found	86.45
cd05023		89	S-100A11 S-100A11: S-100A11 domain found in protei	84.67
KOG0028		172	consensus Ca2+-binding protein (centrin/caltractin	84.01
cd00051		63	EFh EF-hand, calcium binding motif; A diverse supe	82.7
KOG0027		151	consensus Calmodulin and related proteins (EF-Hand	81.77
KOG0027		151	consensus Calmodulin and related proteins (EF-Hand	81.16

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=4.1e-63  Score=594.40  Aligned_cols=449  Identities=25%  Similarity=0.433  Sum_probs=384.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhhhhhHHHHHHhchHHH
Q 004951          138 YEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL  217 (722)
Q Consensus       138 ~e~~~~~if~~e~~~k~~~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~R~lR~lrli~~~~~l  217 (722)
                      .|.+|+.+|++|+++|+++.|...|++|.||++|++++++++|.++....    .....+.+|++|+|||+|.++..++|
T Consensus       877 ~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~m  952 (1592)
T KOG2301|consen  877 ADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPGM  952 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcccc
Confidence            59999999999999999999998899999999999999999999988765    22367899999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhhhc----------------------------------------------------------cccc
Q 004951          218 RDTLFVLAGMLGTYLNVL----------------------------------------------------------GNMV  239 (722)
Q Consensus       218 r~~~~~i~~~l~~~~~i~----------------------------------------------------------~~~~  239 (722)
                      |.++..+++.++.++++.                                                          ...|
T Consensus       953 r~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~n 1032 (1592)
T KOG2301|consen  953 RVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFN 1032 (1592)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccc
Confidence            999999999988887753                                                          4568


Q ss_pred             cccHHHHHHHHHHHHhcCCCCCcchh-----------hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951          240 FTSFGTTLYQMFVLFTTSNNPDVWIP-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV  308 (722)
Q Consensus       240 F~~~~~s~~~lf~l~t~e~w~dvm~~-----------~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~~  308 (722)
                      |||++++++++|+..|.+||+|+|+.           .+..+.+.++||++|+++|.|+.+|+|+|||.+||+++.+++.
T Consensus      1033 fDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~ 1112 (1592)
T KOG2301|consen 1033 FDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAG 1112 (1592)
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhh
Confidence            99999999999999999999999864           4556778899999999999999999999999999999988876


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951          309 SEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA  388 (722)
Q Consensus       309 ~~~~~~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~  388 (722)
                      .+                      +.+.+|.... ...++..                                     +
T Consensus      1113 ~~----------------------~~~~eq~~~~-~~~~~l~-------------------------------------s 1132 (1592)
T KOG2301|consen 1113 GT----------------------FMTEEQKKRL-NAAKKLG-------------------------------------S 1132 (1592)
T ss_pred             hh----------------------hhhHHHHHHH-HHHHHhc-------------------------------------C
Confidence            63                      0111111100 0010000                                     0


Q ss_pred             hhhcccCCccccccCCCCcCchHHHHHHHccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 004951          389 LRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYV  468 (722)
Q Consensus       389 ~~~~k~~~~~~~~~~p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~  468 (722)
                      ++.+| +.|        .+.++.+.+++.++.++.|++.+..++++|++.++++++.  ++......+.+++.+|+.+|+
T Consensus      1133 k~~~r-~ip--------r~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~--qs~~~~~~l~~in~vft~~Ft 1201 (1592)
T KOG2301|consen 1133 KPPQR-PIP--------RPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYD--QSDTYTAILTILNAVFIVLFT 1201 (1592)
T ss_pred             CCCCC-CCC--------CCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHH
Confidence            01111 111        2245688999999999999999999999999999999863  445667788999999999999


Q ss_pred             HHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004951          469 LEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVA  548 (722)
Q Consensus       469 ~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~  548 (722)
                      +|+++|++|+|++.||+++||.||++++++++++.+++.....   +.++....++.|++|+.|++|+++..+++|.+..
T Consensus      1202 ~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~ 1278 (1592)
T KOG2301|consen 1202 IECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLL 1278 (1592)
T ss_pred             HHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHHHH
Confidence            9999999999999999999999999999999999988766543   1234556799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHH
Q 004951          549 TFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWM  628 (722)
Q Consensus       549 tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im  628 (722)
                      |++.|+|++.++++++++++++||++||++||....+        ++++    ++||.+|++|++.||+++|+|||+++|
T Consensus      1279 t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~--------~i~~----~~NF~tf~~a~i~LFr~~Tge~W~~im 1346 (1592)
T KOG2301|consen 1279 TLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG--------GIND----HNNFRTFPNSMVVLFRCATGEGWNDIM 1346 (1592)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc--------ccCC----CcccccchhheeeeeehhhhhhHHHHH
Confidence            9999999999999999999999999999999999865        1112    589999999999999999999999999


Q ss_pred             HHHHh--------------hhC-CceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004951          629 QSYKE--------------LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS  676 (722)
Q Consensus       629 ~~~~~--------------~~g-~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~  676 (722)
                      .+++.              .|| ..++.+||++|+++++++++|||||||+|||+..++..++
T Consensus      1347 ~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1347 DDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred             HHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence            99875              367 6889999999999999999999999999999999888774

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]	Back alignment and domain information

>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E	Back alignment and domain information

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13	Back alignment and domain information

>smart00027 EH Eps15 homology domain	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B	Back alignment and domain information

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]	Back alignment and domain information

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction	Back alignment and domain information

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z	Back alignment and domain information

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10	Back alignment and domain information

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11	Back alignment and domain information

>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	Back alignment and domain information

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		722
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	6e-35
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	5e-08
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	6e-32
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1wlz_A		105	DJBP, CAP-binding protein complex interacting prot	4e-06
2pmy_A		91	RAS and EF-hand domain-containing protein; rasef,	3e-05
2kgr_A		111	Intersectin-1; structure, alternative splicing, ca	4e-04
2sas_A		185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	7e-04
2be4_A		272	Hypothetical protein LOC449832; DR.36843, BC083168	8e-04

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285	Back alignment and structure

 Score =  133 bits (336), Expect = 6e-35
 Identities = 49/286 (17%), Positives = 109/286 (38%), Gaps = 36/286 (12%)

Query: 407 YHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWI 466
             S    ++   + S+ F   I  ++++N + + +ET+      S          +   I
Sbjct: 15  RGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETS-KTFMQSFGVYTTLFNQIVITI 73

Query: 467 YVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLL 526
           + +E+ L+IY +   ++++D  + FDF     +V             + +        L 
Sbjct: 74  FTIEIILRIYVHRI-SFFKDPWSLFDF----FVVAI-----------SLVPTSSGFEILR 117

Query: 527 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG 586
           + R+LRL RL+  V Q R  V+  +++IP ++  +  +     I+  +  Q+FG      
Sbjct: 118 VLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPE- 176

Query: 587 NAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVS 646
                             F        TLF ++ + +W + +     +    +   +F+ 
Sbjct: 177 -----------------WFGTLGESFYTLFQVMTLESWSMGI-VRPLMEVYPYAWVFFIP 218

Query: 647 FYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERR 692
           F  +   +++NLV+A  ++A     + E     +E     +     
Sbjct: 219 FIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNE 264

PyMOL of 3rvy

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Length = 105	Back alignment and structure

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91	Back alignment and structure

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Length = 111	Back alignment and structure

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Length = 185	Back alignment and structure

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		722
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	100.0
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	100.0
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	99.93
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	99.92
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	99.92
4f4l_A		112	ION transport protein; alpha helical membrane prot	99.84
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	99.72
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	99.71
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	99.62
1ors_C		132	Potassium channel; voltage-dependent, voltage sens	99.59
4f4l_A		112	ION transport protein; alpha helical membrane prot	99.55
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	99.33
2kyh_A		147	KVAP, voltage-gated potassium channel; ION channel	99.23
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	99.0
1ors_C		132	Potassium channel; voltage-dependent, voltage sens	98.85
2kyh_A		147	KVAP, voltage-gated potassium channel; ION channel	97.98
2a9h_A		155	Voltage-gated potassium channel; potassium channel	97.73
2a9h_A		155	Voltage-gated potassium channel; potassium channel	97.39
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	97.3
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	96.67
4h33_A		137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	95.94
2lv7_A		100	Calcium-binding protein 7; metal binding protein;	95.41
1fi6_A		92	EH domain protein REPS1; EPS15 homology domain, EF	94.85
1eh2_A		106	EPS15; calcium binding, signaling domain, NPF bind	94.8
1qg9_A		26	Protein (sodium channel protein, brain II alpha su	94.4
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	94.34
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	94.18
1c07_A		95	Protein (epidermal growth factor receptor pathway	94.13
1qjt_A		99	EH1, epidermal growth factor receptor substrate su	94.05
2kgr_A		111	Intersectin-1; structure, alternative splicing, ca	94.03
1wlz_A		105	DJBP, CAP-binding protein complex interacting prot	93.92
2kz2_A		94	Calmodulin, CAM; TR2C, metal binding protein; NMR	93.87
1tiz_A		67	Calmodulin-related protein, putative; helix-turn-h	93.52
3fia_A		121	Intersectin-1; EH 1 domain, NESG, structural genom	92.98
1avs_A		90	Troponin C; muscle contraction, calcium-activated,	92.75
2ktg_A		85	Calmodulin, putative; ehcam, Ca-binding protein, p	92.75
2joj_A		77	Centrin protein; N-terminal domain, centrin soluti	92.75
2jq6_A		139	EH domain-containing protein 1; metal binding prot	92.71
2obh_A		143	Centrin-2; DNA repair complex EF hand superfamily	92.63
2pmy_A		91	RAS and EF-hand domain-containing protein; rasef,	92.56
2opo_A		86	Polcalcin CHE A 3; calcium-binding protein, dimer,	92.54
1k2h_A		93	S100A1, S-100 protein, alpha chain; non-covalent h	92.37
3rm1_A		92	Protein S100-B; alpha-helical, EF hand, metal bind	92.32
1yx7_A		83	Calsensin, LAN3-6 antigen; calcium-binding protein	92.25
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	92.17
2kn2_A		92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	92.06
2b1u_A		71	Calmodulin-like protein 5; CLSP, calmodulin-like S	91.94
2lmt_A		148	Calmodulin-related protein 97A; spermatogenesis, m	91.87
3n22_A		98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	91.83
3li6_A		66	Calcium-binding protein; calcium signaling protein	91.62
1k9u_A		78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	91.59
1iq3_A		110	Ralbp1-interacting protein (partner of ralbp1); EF	91.57
4eto_A		93	Protein S100-A4; calcium-binding protein, EF-hand,	91.51
4h33_A		137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	91.5
1qx2_A		76	Vitamin D-dependent calcium-binding protein, INTE;	91.44
2lnk_A		113	Protein S100-A4; EF-hand, calcium binding, all alp	91.43
1j7q_A		86	CAVP, calcium vector protein; EF-hand family, calc	91.37
3nxa_A		100	Protein S100-A16; S100 family, calcium binding pro	91.28
1exr_A		148	Calmodulin; high resolution, disorder, metal trans	91.24
3zwh_A		104	Protein S100-A4; Ca-binding protein-motor protein	90.98
1xk4_C		113	Calgranulin B; S100 family, heterotetramer, metal	90.97
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	90.71
3nso_A		101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	90.69
2lcm_A		28	Voltage-dependent N-type calcium channel subunit;	90.49
1q80_A		174	SCP, sarcoplasmic calcium-binding protein; all-alp	90.33
3qrx_A		169	Centrin; calcium-binding, EF-hand, cell division,	90.21
2d58_A		107	Allograft inflammatory factor 1; EF-hand, metal bi	90.16
2kav_A		129	Sodium channel protein type 2 subunit alpha; volta	90.13
1qv0_A		195	Obelin, OBL; photoprotein, bioluminescence, atomic	90.02
3h4s_E		135	KCBP interacting Ca2+-binding protein; kinesin, mo	89.92
1top_A		162	Troponin C; contractIle system protein; 1.78A {Gal	89.88
5pal_A		109	Parvalbumin; calcium-binding protein; 1.54A {Triak	89.87
2lhi_A		176	Calmodulin, serine/threonine-protein phosphatase c	89.53
2y5i_A		99	S100Z, S100 calcium binding protein Z; metal-bindi	89.48
1bu3_A		109	Calcium-binding protein; 1.65A {Merluccius bilinea	89.22
2kax_A		92	Protein S100-A5; EF-hand, calcium binding protien,	89.15
1rwy_A		109	Parvalbumin alpha; EF-hand, calcium-binding, calci	89.05
3fs7_A		109	Parvalbumin, thymic; calcium-binding protein, EF-h	88.85
2pvb_A		108	Protein (parvalbumin); calcium binding protein, me	88.7
1j55_A		95	S-100P protein; metal binding protein; 2.00A {Homo	88.64
1c7v_A		81	CAVP, calcium vector protein; EF-hand family, calc	88.62
2lcm_A		28	Voltage-dependent N-type calcium channel subunit;	88.43
2mys_C		149	Myosin; muscle protein, motor protein; HET: MLY; 2	88.28
3i5g_C		159	Myosin catalytic light chain LC-1, mantle muscle;	88.15
3akb_A		166	Putative calcium binding protein; EF-hand, metal b	88.14
2jjz_A		150	Ionized calcium-binding adapter molecule 2; EF-han	88.13
3i5g_B		153	Myosin regulatory light chain LC-2, mantle muscle;	88.02
3j04_B		143	Myosin regulatory light chain 2, smooth muscle MA	87.93
3fwb_A		161	Cell division control protein 31; gene gating, com	87.86
2ccm_A		191	Calexcitin; EF hand, calcium, signaling protein; 1	87.85
2hpk_A		208	Photoprotein berovin; structural genomics, PSI, pr	87.84
1pva_A		110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	87.83
1k8u_A		90	S100A6, calcyclin, CACY; calcium regulatory protei	87.74
1xk4_A		93	Calgranulin A; S100 family, heterotetramer, metal	87.66
1uhk_A		191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	87.56
1ggw_A		140	Protein (CDC4P); light chain, cytokinesis, cell cy	87.54
3ox6_A		153	Calcium-binding protein 1; EF-hand, calcium-sensor	87.5
1wy9_A		147	Allograft inflammatory factor 1; EF-hand, calucium	87.39
2ovk_C		159	Myosin catalytic light chain LC-1, mantle muscle,	87.3
2mys_B		166	Myosin; muscle protein, motor protein; HET: MLY; 2	87.26
2wcb_A		95	Protein S100-A12; calcium signalling, HOST-parasit	87.24
1dtl_A		161	Cardiac troponin C; helix-turn-helix, structural p	87.04
1cb1_A		78	Calbindin D9K; calcium-binding protein; NMR {Sus s	87.04
2bl0_B		145	Myosin regulatory light chain; muscle protein, sli	87.0
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	86.8
4ds7_A		147	Calmodulin, CAM; protein binding, metal binding, s	86.75
1m45_A		148	MLC1P, myosin light chain; protein-peptide complex	86.34
3ox6_A		153	Calcium-binding protein 1; EF-hand, calcium-sensor	86.31
2bl0_C		142	Myosin regulatory light chain; muscle protein, sli	86.3
1w7j_B		151	Myosin light chain 1; motor protein, unconventiona	85.95
3u0k_A		440	Rcamp; fluorescent protein, calcium binding, EF-ha	85.9
2l4h_A		214	Calcium and integrin-binding protein 1; metal bind	85.74
4drw_A		121	Protein S100-A10/annexin A2 chimeric protein; atyp	85.64
3qrx_A		169	Centrin; calcium-binding, EF-hand, cell division,	85.62
3nyv_A		484	Calmodulin-domain protein kinase 1; serine/threoni	85.52
2qks_A		321	KIR3.1-prokaryotic KIR channel chimera; G-protein	85.49
1rro_A		108	RAT oncomodulin; calcium-binding protein; 1.30A {R	85.41
3dd4_A		229	KV channel-interacting protein 4; EF-hands protein	85.41
2f2o_A		179	Calmodulin fused with calmodulin-binding domain of	85.05
2jnf_A		158	Troponin C; stretch activated muscle contraction,	84.9
3u0k_A		440	Rcamp; fluorescent protein, calcium binding, EF-ha	84.88
2obh_A		143	Centrin-2; DNA repair complex EF hand superfamily	84.8
3fwb_A		161	Cell division control protein 31; gene gating, com	84.74
1qls_A		99	S100C protein, calgizzarin; metal-binding protein/	84.68
2ovk_B		153	RLC, myosin regulatory light chain LC-2, mantle mu	84.65
3k21_A		191	PFCDPK3, calcium-dependent protein kinase 3; calci	84.57
3khe_A		191	Calmodulin-like domain protein kinase isoform 3; c	84.52
2jnf_A		158	Troponin C; stretch activated muscle contraction,	84.46
1s6j_A		87	CDPK, calcium-dependent protein kinase SK5; EF-han	84.11
1wdc_C		156	Scallop myosin; calcium binding protein, muscle pr	83.95
4ds7_A		147	Calmodulin, CAM; protein binding, metal binding, s	83.94
2f2o_A		179	Calmodulin fused with calmodulin-binding domain of	83.86
3ll8_B		155	Calcineurin subunit B type 1; protein-peptide dock	83.82
1y1x_A		191	Leishmania major homolog of programmed cell death	83.78
1exr_A		148	Calmodulin; high resolution, disorder, metal trans	83.64
2bl0_C		142	Myosin regulatory light chain; muscle protein, sli	83.49
2h2k_A		106	Protein S100-A13; calcium binding protein, metal b	83.31
1a4p_A		96	S100A10; S100 family, EF-hand protein, ligand of a	83.3
1top_A		162	Troponin C; contractIle system protein; 1.78A {Gal	83.08
2q67_A		114	Potassium channel protein; inverted teepee, helix	82.92
1s6c_A		183	KV4 potassium channel-interacting protein kchip1B;	82.59
1psr_A		100	Psoriasin, S100A7; EF-hand protein, MAD phasing, p	82.55
1k94_A		165	Grancalcin; penta-EF-hand protein, calcium binding	82.49
1wdc_B		156	Scallop myosin; calcium binding protein, muscle pr	82.08
2znd_A		172	Programmed cell death protein 6; penta-EF-hand pro	81.86
3pjs_K		166	KCSA, voltage-gated potassium channel; ION channel	81.63
1gjy_A		167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	81.62
1alv_A		173	Calpain, S-camld; calcium binding, calmodulin like	81.43
3e3r_A		204	Calcyphosin, calcyphosine; human calcyphosine, EF-	81.43
1s1e_A		224	KV channel interacting protein 1; kchip, calcium-b	81.08
2aao_A		166	CDPK, calcium-dependent protein kinase, isoform AK	80.76
1nya_A		176	Calerythrin; EF-hand, metal binding protein; NMR {	80.76
2mys_C		149	Myosin; muscle protein, motor protein; HET: MLY; 2	80.75
3mse_B		180	Calcium-dependent protein kinase, putative; CDPKS,	80.74
2ggz_A		211	Guanylyl cyclase-activating protein 3; EF hand, gu	80.73
1dtl_A		161	Cardiac troponin C; helix-turn-helix, structural p	80.68
3sjs_A		220	URE3-BP sequence specific DNA binding protein; EF-	80.66
2q67_A		114	Potassium channel protein; inverted teepee, helix	80.27
2bec_A		202	Calcineurin B homologous protein 2; calcineurin-ho	80.08
3k21_A		191	PFCDPK3, calcium-dependent protein kinase 3; calci	80.03

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}	Back alignment and structure

Probab=100.00  E-value=1.4e-37  Score=315.93  Aligned_cols=223  Identities=21%  Similarity=0.415  Sum_probs=189.6

Q ss_pred             HHHHccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhccccchh
Q 004951          414 KLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYG-FENYWRDGQNRFD  492 (722)
Q Consensus       414 ~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~lKi~a~g-~~~y~~~~wn~fD  492 (722)
                      +|+++++|++|+.++.++|++|++.+++++++  .+....+.+..+|.+|+++|++|+++|+++.| +++|++++||++|
T Consensus         4 ~~~~iv~~~~f~~~i~~~I~ln~i~l~~~~~~--~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni~D   81 (229)
T 4dxw_A            4 FFSSLKDNRIFQFTVVSIIILNAVLIGATTYE--LDPLFLETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFD   81 (229)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHHHSTTTCCSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHccCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHHHH
Confidence            47899999999999999999999999999864  34456678899999999999999999999996 5899999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004951          493 FLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYC  572 (722)
Q Consensus       493 ~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifA  572 (722)
                      +++++.++++..             ....++++|++|++|++|+++..+++|.+..++.++.|++.++++++++++++||
T Consensus        82 ~~~v~~~~i~~~-------------~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa  148 (229)
T 4dxw_A           82 TVIVAISLIPIP-------------NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYA  148 (229)
T ss_dssp             HHHHHHTTCC---------------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcC-------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887654321             1123466788999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHH
Q 004951          573 SLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITV  652 (722)
Q Consensus       573 iiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~  652 (722)
                      ++|+++|+|..                  +.||+|+++|++++|+++|+|||+++|+++++..  +|+.+||++|+++++
T Consensus       149 ~~g~~lf~~~~------------------~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~--~~~~~~f~~~~~i~~  208 (229)
T 4dxw_A          149 TMGAILFGNDD------------------PSRWGDLGISLITLFQVLTLSSWETVMLPMQEIY--WWSWVYFFSFIIICS  208 (229)
T ss_dssp             HHHHHHTTTTS------------------CTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTC--TTHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCC------------------cccccCHHHHHHHHHHHHccCCHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence            99999999863                  1489999999999999999999999999988764  588999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004951          653 LLLLNLVIAFVLEAFFAEM  671 (722)
Q Consensus       653 ~i~lnLfvavi~e~F~~~~  671 (722)
                      ++++|||+|+++|||+++.
T Consensus       209 ~i~lNlfiavi~~~f~~~~  227 (229)
T 4dxw_A          209 ITILNLVIAILVDVVIQKK  227 (229)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999753

PyMOL of 4dxw

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}	Back alignment and structure

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*	Back alignment and structure

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A	Back alignment and structure

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1	Back alignment and structure

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*	Back alignment and structure

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A	Back alignment and structure

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1	Back alignment and structure

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A	Back alignment and structure

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6	Back alignment and structure

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6	Back alignment and structure

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6	Back alignment and structure

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}	Back alignment and structure

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7	Back alignment and structure

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}	Back alignment and structure

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5	Back alignment and structure

>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A	Back alignment and structure

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A	Back alignment and structure

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}	Back alignment and structure

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A	Back alignment and structure

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A	Back alignment and structure

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}	Back alignment and structure

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A	Back alignment and structure

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A	Back alignment and structure

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...	Back alignment and structure

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}	Back alignment and structure

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}	Back alignment and structure

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A	Back alignment and structure

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}	Back alignment and structure

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10	Back alignment and structure

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6	Back alignment and structure

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*	Back alignment and structure

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A	Back alignment and structure

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A	Back alignment and structure

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A	Back alignment and structure

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A	Back alignment and structure

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A	Back alignment and structure

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...	Back alignment and structure

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}	Back alignment and structure

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A	Back alignment and structure

>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}	Back alignment and structure

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A	Back alignment and structure

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A	Back alignment and structure

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}	Back alignment and structure

>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A	Back alignment and structure

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*	Back alignment and structure

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}	Back alignment and structure

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...	Back alignment and structure

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4	Back alignment and structure

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}	Back alignment and structure

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4	Back alignment and structure

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A	Back alignment and structure

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A	Back alignment and structure

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A	Back alignment and structure

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A	Back alignment and structure

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A	Back alignment and structure

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A	Back alignment and structure

>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}	Back alignment and structure

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*	Back alignment and structure

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C	Back alignment and structure

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A	Back alignment and structure

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A	Back alignment and structure

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B	Back alignment and structure

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}	Back alignment and structure

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A	Back alignment and structure

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}	Back alignment and structure

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}	Back alignment and structure

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A	Back alignment and structure

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A	Back alignment and structure

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A	Back alignment and structure

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A	Back alignment and structure

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5	Back alignment and structure

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A	Back alignment and structure

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A	Back alignment and structure

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B	Back alignment and structure

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A	Back alignment and structure

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...	Back alignment and structure

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1	Back alignment and structure

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A	Back alignment and structure

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A	Back alignment and structure

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A	Back alignment and structure

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A	Back alignment and structure

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}	Back alignment and structure

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C	Back alignment and structure

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}	Back alignment and structure

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A	Back alignment and structure

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}	Back alignment and structure

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A	Back alignment and structure

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*	Back alignment and structure

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}	Back alignment and structure

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A	Back alignment and structure

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A	Back alignment and structure

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A	Back alignment and structure

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A	Back alignment and structure

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}	Back alignment and structure

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A	Back alignment and structure

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A	Back alignment and structure

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A	Back alignment and structure

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A	Back alignment and structure

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}	Back alignment and structure

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A	Back alignment and structure

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5	Back alignment and structure

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...	Back alignment and structure

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A	Back alignment and structure

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A	Back alignment and structure

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*	Back alignment and structure

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8	Back alignment and structure

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...	Back alignment and structure

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}	Back alignment and structure

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A	Back alignment and structure

>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A	Back alignment and structure

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E	Back alignment and structure

>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A	Back alignment and structure

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A	Back alignment and structure

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...	Back alignment and structure

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A	Back alignment and structure

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A	Back alignment and structure

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8	Back alignment and structure

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A	Back alignment and structure

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}	Back alignment and structure

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5	Back alignment and structure

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}	Back alignment and structure

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5	Back alignment and structure

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*	Back alignment and structure

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}	Back alignment and structure

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}	Back alignment and structure

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...	Back alignment and structure

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}	Back alignment and structure

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		722
d1orsc_		132	f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer	6e-07
d1oqpa_		77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	2e-06
d1rwya_		109	a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [Ta	4e-06
d2pvba_		107	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	6e-06
d1pvaa_		109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	7e-06
d2opoa1		81	a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che	8e-06
d5pala_		109	a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis	9e-06
d1rroa_		108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	2e-05
d2fcea1		61	a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [	4e-05
d1fi5a_		81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	4e-05
d1c7va_		68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	4e-05
d1s6ja_		87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	1e-04
d1f54a_		77	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	1e-04
d1fw4a_		65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	2e-04
d1topa_		162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-04
d2obha1		141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	2e-04
d1ij5a_		321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	2e-04
d2pq3a1		73	a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [T	2e-04
d1avsa_		81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	5e-04
d1dtla_		156	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	6e-04
d1zfsa1		93	a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus no	0.002
d1tiza_		67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	0.002
d1jc2a_		75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.003
d1yuta1		98	a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sa	0.003
d1a4pa_		92	a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapien	0.003
d1qjta_		99	a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId:	0.003
d3c1va1		93	a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sa	0.004

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 12/142 (8%)

Query: 418 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYS 477
            +        +S   +++++ V+VE T+ +           V+ +   I   + A + Y 
Sbjct: 2   VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEY-LVRLYLVDLILVIILWADYAYRAYK 60

Query: 478 YGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLL 537
            G        +  ++              + +        +   +    L R+LR +R+L
Sbjct: 61  SGD-PAGYVKKTLYEIP----------ALVPAGLLALIEGHLAGLGLFRLVRLLRFLRIL 109

Query: 538 MHVQQYRGFVATFLTLIPSLMP 559
           + + +   F++        L+P
Sbjct: 110 LIISRGSKFLSAIADAADKLVP 131

PyMOL of d1orsc_

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77	Back information, alignment and structure

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Length = 109	Back information, alignment and structure

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 107	Back information, alignment and structure

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109	Back information, alignment and structure

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81	Back information, alignment and structure

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Length = 109	Back information, alignment and structure

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108	Back information, alignment and structure

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 61	Back information, alignment and structure

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68	Back information, alignment and structure

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87	Back information, alignment and structure

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77	Back information, alignment and structure

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65	Back information, alignment and structure

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141	Back information, alignment and structure

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321	Back information, alignment and structure

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Length = 73	Back information, alignment and structure

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81	Back information, alignment and structure

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 156	Back information, alignment and structure

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Length = 93	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67	Back information, alignment and structure

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75	Back information, alignment and structure

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Length = 98	Back information, alignment and structure

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Length = 92	Back information, alignment and structure

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99	Back information, alignment and structure

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Length = 93	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		722
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.61
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.73
d1wlza1		83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	96.15
d1oqpa_		77	Caltractin (centrin 2) {Green algae (Chlamydomonas	95.65
d1tiza_		67	Calmodulin-related protein T21P5.17 {Thale cress (	95.48
d1fw4a_		65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.38
d2fcea1		61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.28
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	95.16
d1jc2a_		75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.09
d2pq3a1		73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	94.88
d1fi6a_		92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	94.86
d1qv0a_		189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	94.82
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	94.7
d1f54a_		77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.63
d1avsa_		81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	94.57
d1wrka1		82	Troponin C {Human (Homo sapiens), cardiac isoform	94.48
d1c07a_		95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	94.41
d1fi5a_		81	Troponin C {Chicken (Gallus gallus), cardiac isofo	94.33
d1c7va_		68	Calcium vector protein {Amphioxus (Branchiostoma l	93.85
d2opoa1		81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	93.53
d1rroa_		108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	93.24
d1rwya_		109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	93.1
d5pala_		109	Parvalbumin {Leopard shark (Triakis semifasciata)	92.93
d1uhka1		187	Calcium-regulated photoprotein {Jellyfish (Aequore	92.91
d2pvba_		107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	92.61
d1pvaa_		109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	92.16
d1exra_		146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	92.03
d2jxca1		95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	91.92
d1zfsa1		93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	91.74
d1topa_		162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	91.34
d2obha1		141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	91.11
d1s6ja_		87	Calcium-dependent protein kinase sk5 CLD {Soybean	91.02
d2mysc_		145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	90.55
d1qjta_		99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	90.36
d1a4pa_		92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	90.06
d1iq3a_		110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	89.88
d1lkja_		146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	89.58
d2sasa_		185	Sarcoplasmic calcium-binding protein {Amphioxus (B	88.85
d1xo5a_		180	Calcium- and integrin-binding protein, CIB {Human	88.44
d1qx2a_		76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	88.32
d1dtla_		156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	87.9
d1ggwa_		140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	87.29
d2mysb_		145	Myosin Essential Chain {Chicken (Gallus gallus) [T	87.2
d1m45a_		146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	86.03
d1nyaa_		176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	85.89
d3c1va1		93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	85.75
d1ksoa_		93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	85.61
d1w7jb1		139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	84.94
d1y1xa_		182	Programmed cell death 6 protein-like protein {Leis	84.83
d1wdcb_		142	Myosin Essential Chain {Bay scallop (Aequipecten i	84.34
d2obha1		141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	83.98
d2scpa_		174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	83.43
d1exra_		146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	83.01
d2h8pc1		57	Potassium channel protein {Streptomyces coelicolor	82.7
d1g8ia_		187	Frequenin (neuronal calcium sensor 1) {Human (Homo	81.69
d1e8aa_		87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	80.54

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.61  E-value=8.9e-16  Score=138.31  Aligned_cols=129  Identities=15%  Similarity=0.212  Sum_probs=108.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhccccchhHHHHH
Q 004951          418 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTW  497 (722)
Q Consensus       418 iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~lKi~a~g~~~y~~~~wn~fD~~vvi  497 (722)
                      +++||.|+.++.+++++|++.+++|+.++. +......+.++|.+|+++|++|+++|+++.| +.|....||++|++.++
T Consensus         2 ~i~~p~~e~~i~~lillnvi~~~let~~~~-~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~-~~~~~~~~~~iDl~ai~   79 (132)
T d1orsc_           2 VMEHPLVELGVSYAALLSVIVVVVEYTMQL-SGEYLVRLYLVDLILVIILWADYAYRAYKSG-DPAGYVKKTLYEIPALV   79 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTTTTTTCGGGTGGGS
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhCC-ccceeCCcchHHHHHHH
Confidence            689999999999999999999999987543 3356678899999999999999999999988 35666789999999887


Q ss_pred             HHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004951          498 VIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLM  558 (722)
Q Consensus       498 ~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~  558 (722)
                      .+++.....          ...+.+|++|++|++|++|+++..++++.+.+++.++.+++.
T Consensus        80 p~~~~~~~~----------~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~lv  130 (132)
T d1orsc_          80 PAGLLALIE----------GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV  130 (132)
T ss_dssp             CHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            776654432          123467889999999999999999999999999999998764

PyMOL of d1orsc_

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}	Back information, alignment and structure

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}	Back information, alignment and structure

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}	Back information, alignment and structure

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}	Back information, alignment and structure

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}	Back information, alignment and structure

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	Back information, alignment and structure

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	Back information, alignment and structure

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}	Back information, alignment and structure

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}	Back information, alignment and structure

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}	Back information, alignment and structure

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}	Back information, alignment and structure

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}	Back information, alignment and structure

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}	Back information, alignment and structure

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}	Back information, alignment and structure

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}	Back information, alignment and structure

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}	Back information, alignment and structure