Citrus Sinensis ID: 004964

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-

MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL

ccccEEEEEccccccccccEEEEEEccCEEEEEcccccccccccccccccccccccEEEEcccccccccHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEECcccEEEEEECccccccEEEEEEEEccEEEEEEccccccccccccccccccccccCEEEEcccccccccccHHHHHHHHHHHHHHHHcccCEEEccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccEEEcccccHHHccccccEEEEEcccccccHHHHHHHHHHccccccEEEEEcccccccHHHHHHcccccccEEEEccEEEEEEEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccCEEEEECcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEEccEEEEEEEEEEEEccccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHcccccEECcccccEEEEcccccEEEEEccHHHHHccccccccccEEEEEEEEEEcccccccccccccccccccccEEEccccHHcHHHHHHHcccEEEEEccEEEEccEEEEEEccccccccccccccEEEEEccccHHHHHHHHHHHHccccc

*GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH********EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQ**********************************************VVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDE**********************LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPIST****HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG******GTQQIVIEGPLCEDYYKIRAYLYSQFYLL

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MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAxxxxxxxxxxxxxxxxxxxxxEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Cleavage and polyadenylation specificity factor subunit 2	CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.	confident	Q9LKF9
Cleavage and polyadenylation specificity factor subunit 2	CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.	confident	Q652P4
Cleavage and polyadenylation specificity factor subunit 2	Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Involved in the histone 3' end pre-mRNA processing.	probable	Q10568

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2I7T, chain A
Confidence level:very confident
Coverage over the Query: 3-246,282-356,436-439,514-586
View the alignment between query and template
View the model in PyMOL

Template: 2I7X, chain A
Confidence level:very confident
Coverage over the Query: 5-370
View the alignment between query and template
View the model in PyMOL