Citrus Sinensis ID: 004964
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LKF9 | 739 | Cleavage and polyadenylat | yes | no | 0.994 | 0.970 | 0.773 | 0.0 | |
| Q652P4 | 738 | Cleavage and polyadenylat | yes | no | 0.994 | 0.971 | 0.716 | 0.0 | |
| Q9V3D6 | 756 | Probable cleavage and pol | yes | no | 0.958 | 0.914 | 0.362 | 1e-138 | |
| O35218 | 782 | Cleavage and polyadenylat | yes | no | 0.954 | 0.879 | 0.347 | 1e-137 | |
| Q10568 | 782 | Cleavage and polyadenylat | yes | no | 0.951 | 0.877 | 0.345 | 1e-136 | |
| Q9P2I0 | 782 | Cleavage and polyadenylat | yes | no | 0.951 | 0.877 | 0.343 | 1e-136 | |
| Q9W799 | 783 | Cleavage and polyadenylat | N/A | no | 0.959 | 0.883 | 0.350 | 1e-133 | |
| Q55BS1 | 784 | Cleavage and polyadenylat | yes | no | 0.968 | 0.890 | 0.325 | 1e-119 | |
| O17403 | 843 | Probable cleavage and pol | yes | no | 0.864 | 0.739 | 0.317 | 2e-92 | |
| A8XUS3 | 842 | Probable cleavage and pol | N/A | no | 0.850 | 0.728 | 0.311 | 3e-91 |
| >sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/743 (77%), Positives = 651/743 (87%), Gaps = 26/743 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSVT----------- 109
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+ V+
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 110 -------RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
G D+N S +PM+ID + DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 698
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 699 IEGPLCEDYYKIRAYLYSQFYLL 721
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
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CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2 OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1 | Back alignment and function description |
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| >sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2 OS=Xenopus laevis GN=cpsf2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2 OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1 | Back alignment and function description |
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| >sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1 | Back alignment and function description |
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| >sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | ||||||
| 255553723 | 740 | cleavage and polyadenylation specificity | 0.997 | 0.971 | 0.846 | 0.0 | |
| 224121102 | 740 | predicted protein [Populus trichocarpa] | 0.998 | 0.972 | 0.825 | 0.0 | |
| 449446027 | 738 | PREDICTED: cleavage and polyadenylation | 0.995 | 0.972 | 0.823 | 0.0 | |
| 356530856 | 736 | PREDICTED: cleavage and polyadenylation | 0.993 | 0.972 | 0.823 | 0.0 | |
| 356559788 | 738 | PREDICTED: cleavage and polyadenylation | 0.997 | 0.974 | 0.814 | 0.0 | |
| 356530858 | 742 | PREDICTED: cleavage and polyadenylation | 0.997 | 0.969 | 0.817 | 0.0 | |
| 225464483 | 740 | PREDICTED: cleavage and polyadenylation | 0.998 | 0.972 | 0.816 | 0.0 | |
| 356559790 | 743 | PREDICTED: cleavage and polyadenylation | 0.995 | 0.966 | 0.808 | 0.0 | |
| 297808393 | 739 | CPSF100 [Arabidopsis lyrata subsp. lyrat | 0.994 | 0.970 | 0.780 | 0.0 | |
| 15237845 | 739 | cleavage and polyadenylation specificity | 0.994 | 0.970 | 0.773 | 0.0 |
| >gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/742 (84%), Positives = 671/742 (90%), Gaps = 23/742 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL+GV+NENPLSYL+SID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLNGVYNENPLSYLISIDNFNLLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRSV------------ 108
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR++V
Sbjct: 61 SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKAVSEFDLFSLDDID 120
Query: 109 ------TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 162
TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 163 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR--EMFQDAISKTLRAGGNVLLPVDSA 220
+HLNGTVLESFVRPAVLITDAYNAL NQPPRQQR E + I KTL AGGNVLLPVD+A
Sbjct: 181 RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDTA 240
Query: 221 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 280
GRVLELLLILE +WA LNYPI+FLTYVSSSTIDYVKSFLEWM DSI KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQFWAHRLLNYPIFFLTYVSSSTIDYVKSFLEWMSDSIAKSFETSRDNAF 300
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 340
LLKHVTLLINK+ELDNAP+ PK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQFG
Sbjct: 301 LLKHVTLLINKNELDNAPNVPKVVLASMASLEAGFSHDIFVEWAADVKNLVLFTERGQFG 360
Query: 341 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 400
TLARMLQADPPPKAVKVTMSRRVPLVG+ELIAYEEEQ RLKKEE L AS++KEEE+K S
Sbjct: 361 TLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKRLKKEEELNASMIKEEEAKVSH 420
Query: 401 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 460
GPD+NLS DPM+IDA+N NAS D V G YRDIL DGFVPPSTSVAPMFPFYEN +EW
Sbjct: 421 GPDSNLS-DPMIIDASNNNASLDAVGSQGTGYRDILFDGFVPPSTSVAPMFPFYENTTEW 479
Query: 461 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 519
DDFGEVINPDDY+IKD+DMDQ MH+GGD DGK DEGSAS ILD KPSKVVS+ELTVQVK
Sbjct: 480 DDFGEVINPDDYVIKDDDMDQP-MHVGGDIDGKFDEGSASWILDTKPSKVVSSELTVQVK 538
Query: 520 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 579
C LI++DYEGR+DGRSIK+IL+HVAPLKLVLVHGSAE+TEHLKQHCLKHVCPHVY PQIE
Sbjct: 539 CSLIYMDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPHVYAPQIE 598
Query: 580 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 639
ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD+EIAWVDAEVGKTE+ LSLLPIST APP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDFEIAWVDAEVGKTESDALSLLPISTSAPP 658
Query: 640 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 699
HKSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG QKGGGSGTQQIVI
Sbjct: 659 HKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNINQKGGGSGTQQIVI 718
Query: 700 EGPLCEDYYKIRAYLYSQFYLL 721
EGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 EGPLCEDYYKIREYLYSQFYLL 740
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa] gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Vitis vinifera] gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata] gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit; Short=AtCPSF100; Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING PHENOTYPE 5 gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 721 | ||||||
| TAIR|locus:2172843 | 739 | CPSF100 "cleavage and polyaden | 0.904 | 0.882 | 0.741 | 1.4e-313 | |
| UNIPROTKB|Q9P2I0 | 782 | CPSF2 "Cleavage and polyadenyl | 0.719 | 0.663 | 0.372 | 5.6e-137 | |
| UNIPROTKB|Q10568 | 782 | CPSF2 "Cleavage and polyadenyl | 0.719 | 0.663 | 0.372 | 9.2e-137 | |
| UNIPROTKB|E2R496 | 782 | CPSF2 "Uncharacterized protein | 0.719 | 0.663 | 0.372 | 1.2e-136 | |
| UNIPROTKB|Q9W799 | 783 | cpsf2 "Cleavage and polyadenyl | 0.747 | 0.688 | 0.372 | 3.1e-136 | |
| RGD|1309687 | 782 | Cpsf2 "cleavage and polyadenyl | 0.719 | 0.663 | 0.370 | 3.1e-136 | |
| MGI|MGI:1861601 | 782 | Cpsf2 "cleavage and polyadenyl | 0.719 | 0.663 | 0.370 | 3.9e-136 | |
| UNIPROTKB|F1NMN0 | 782 | CPSF2 "Uncharacterized protein | 0.719 | 0.663 | 0.372 | 1.3e-135 | |
| ZFIN|ZDB-GENE-040718-79 | 790 | cpsf2 "cleavage and polyadenyl | 0.719 | 0.656 | 0.368 | 1.7e-135 | |
| FB|FBgn0027873 | 756 | Cpsf100 "Cleavage and polyaden | 0.836 | 0.797 | 0.356 | 2.8e-120 |
| TAIR|locus:2172843 CPSF100 "cleavage and polyadenylation specificity factor 100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2527 (894.6 bits), Expect = 1.4e-313, Sum P(2) = 1.4e-313
Identities = 494/666 (74%), Positives = 566/666 (84%)
Query: 66 LHLGALPYAMK---QLGLSA---PVFSTEPVYRLGLLTMYDQYLSRRSVTRLTYSQNYHL 119
L L A YA + +LGL S + V L T+ D + ++V RLTYSQNYHL
Sbjct: 78 LGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYSQNYHL 137
Query: 120 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 179
SGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE+HLNGTVL+SFVRPAVL
Sbjct: 138 SGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQSFVRPAVL 197
Query: 180 ITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 237
ITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+AGRVLELLLILE +W++
Sbjct: 198 ITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257
Query: 238 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 297
++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAFLL+HVTLLINK++LDNA
Sbjct: 258 GFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNA 317
Query: 298 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 357
P GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFGTLARMLQ+ PPPK VKV
Sbjct: 318 PPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAPPPKFVKV 377
Query: 358 TMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDXXX 417
TMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS G D+N S +PM+ID
Sbjct: 378 TMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASHGSDDN-SSEPMIIDTKT 436
Query: 418 XXXSADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDE 477
DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEWDDFGE+INPDDY+IKDE
Sbjct: 437 TH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEWDDFGEIINPDDYVIKDE 493
Query: 478 DMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 536
DMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V C L+ +DYEGR+DGRSI
Sbjct: 494 DMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVSCSLVKMDYEGRSDGRSI 553
Query: 537 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLS 596
K++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIEET+DVTSDLCAYKVQLS
Sbjct: 554 KSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIEETVDVTSDLCAYKVQLS 613
Query: 597 EKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPF 656
EKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A PHK VLVGDLK+AD K F
Sbjct: 614 EKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASPHKPVLVGDLKIADFKQF 673
Query: 657 LSSKGIQVEFAGG-ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 715
LSSKG+QVEFAGG ALRCGEYVT+RKVGP GQKGG SG QQI+IEGPLCEDYYKIR YLY
Sbjct: 674 LSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQILIEGPLCEDYYKIRDYLY 733
Query: 716 SQFYLL 721
SQFYLL
Sbjct: 734 SQFYLL 739
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| UNIPROTKB|Q9P2I0 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q10568 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R496 CPSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9W799 cpsf2 "Cleavage and polyadenylation specificity factor subunit 2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| RGD|1309687 Cpsf2 "cleavage and polyadenylation specific factor 2, 100kDa" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1861601 Cpsf2 "cleavage and polyadenylation specific factor 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NMN0 CPSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040718-79 cpsf2 "cleavage and polyadenylation specific factor 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| FB|FBgn0027873 Cpsf100 "Cleavage and polyadenylation specificity factor 100" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9P2I0 | CPSF2_HUMAN | No assigned EC number | 0.3439 | 0.9514 | 0.8772 | yes | no |
| Q9V3D6 | CPSF2_DROME | No assigned EC number | 0.3625 | 0.9583 | 0.9140 | yes | no |
| O74740 | CFT2_SCHPO | No assigned EC number | 0.315 | 0.9251 | 0.8368 | yes | no |
| Q55BS1 | CPSF2_DICDI | No assigned EC number | 0.3258 | 0.9680 | 0.8903 | yes | no |
| O35218 | CPSF2_MOUSE | No assigned EC number | 0.3472 | 0.9542 | 0.8797 | yes | no |
| Q10568 | CPSF2_BOVIN | No assigned EC number | 0.3451 | 0.9514 | 0.8772 | yes | no |
| Q9LKF9 | CPSF2_ARATH | No assigned EC number | 0.7738 | 0.9944 | 0.9702 | yes | no |
| Q652P4 | CPSF2_ORYSJ | No assigned EC number | 0.7169 | 0.9944 | 0.9715 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 |
|||
 | eugene3.01480064 | hypothetical protein (740 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.XII.1275.1 | • | • | • | • | 0.813 | |||||
 | estExt_Genewise1_v1.C_LG_XVII0873 | • | • | • | 0.758 | ||||||
 | eugene3.00030785 | • | • | • | 0.643 | ||||||
 | gw1.XV.841.1 | • | • | • | 0.587 | ||||||
 | eugene3.00170303 | • | • | • | • | • | 0.528 | ||||
 | gw1.XVII.849.1 | • | • | • | • | • | 0.525 | ||||
 | fgenesh4_pg.C_LG_I002796 | • | • | 0.500 | |||||||
 | eugene3.00440042 | • | • | 0.494 | |||||||
 | eugene3.00161109 | • | • | 0.480 | |||||||
 | gw1.XI.2829.1 | • | • | 0.459 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 721 | |||
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 4e-49 | |
| smart01027 | 126 | smart01027, Beta-Casp, Beta-Casp domain | 4e-29 | |
| pfam13299 | 152 | pfam13299, CPSF100_C, Cleavage and polyadenylation | 3e-25 | |
| pfam10996 | 124 | pfam10996, Beta-Casp, Beta-Casp domain | 4e-22 | |
| COG1782 | 637 | COG1782, COG1782, Predicted metal-dependent RNase, | 4e-22 | |
| TIGR03675 | 630 | TIGR03675, arCOG00543, arCOG00543 universal archae | 1e-17 | |
| pfam00753 | 148 | pfam00753, Lactamase_B, Metallo-beta-lactamase sup | 2e-09 | |
| smart00849 | 177 | smart00849, Lactamase_B, Metallo-beta-lactamase su | 3e-07 | |
| pfam07521 | 43 | pfam07521, RMMBL, RNA-metabolising metallo-beta-la | 4e-06 | |
| COG0491 | 252 | COG0491, GloB, Zn-dependent hydrolases, including | 3e-05 | |
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 0.002 | |
| COG0595 | 555 | COG0595, COG0595, mRNA degradation ribonucleases J | 0.003 |
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 4e-49
Identities = 101/346 (29%), Positives = 143/346 (41%), Gaps = 27/346 (7%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79
L+ G L+DCG DPS +PL +DAVLL+H H+GALPY + + G
Sbjct: 16 CVLLETGGTRILLDCGLFPG-DPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLV-RNG 73
Query: 80 LSAPVFSTEPVYRLGLLTMYDQY-------------LSRRSVTRLTYSQNYHLSGKGEGI 126
PV++T P L + + D V L Y + G+
Sbjct: 74 FEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGV 133
Query: 127 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA 186
V + AGH+LG + DG ++Y D RRK++ LNG L VLI ++
Sbjct: 134 KVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPP--CIDVLIVESTYG 191
Query: 187 LHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYF 245
P R + E F +++ L GG VL+P + GR ELLLIL + +YPIY
Sbjct: 192 DRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYV 249
Query: 246 LTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVL 305
++ + Y K + + K E+ + V N GP +VL
Sbjct: 250 DGPIARVALAYAKYPIGLDLPDLLKVAESR------FRFVESRRNSMREGID-KGPAVVL 302
Query: 306 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 351
A+ L+ G S SD KN VL GTL R+L
Sbjct: 303 AAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT 348
|
Length = 427 |
| >gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|222032 pfam13299, CPSF100_C, Cleavage and polyadenylation factor 2 C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|203663 pfam07521, RMMBL, RNA-metabolising metallo-beta-lactamase | Back alignment and domain information |
|---|
| >gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| KOG1135 | 764 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| COG1782 | 637 | Predicted metal-dependent RNase, consists of a met | 100.0 | |
| KOG1136 | 501 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| TIGR03675 | 630 | arCOG00543 arCOG00543 universal archaeal KH-domain | 100.0 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase f | 100.0 | |
| TIGR00649 | 422 | MG423 conserved hypothetical protein. Contains an | 100.0 | |
| KOG1138 | 653 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| PF13299 | 161 | CPSF100_C: Cleavage and polyadenylation factor 2 C | 100.0 | |
| COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta | 99.95 | |
| PF10996 | 126 | Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T | 99.92 | |
| PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory pro | 99.75 | |
| TIGR03307 | 238 | PhnP phosphonate metabolism protein PhnP. This fam | 99.69 | |
| TIGR02651 | 299 | RNase_Z ribonuclease Z. Processing of the 3-prime | 99.68 | |
| TIGR02649 | 303 | true_RNase_BN ribonuclease BN. Members of this pro | 99.64 | |
| PRK02113 | 252 | putative hydrolase; Provisional | 99.63 | |
| PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB | 99.58 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 99.57 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 99.57 | |
| PF12706 | 194 | Lactamase_B_2: Beta-lactamase superfamily domain; | 99.56 | |
| TIGR02108 | 302 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. | 99.55 | |
| smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Ap | 99.55 | |
| PRK02126 | 334 | ribonuclease Z; Provisional | 99.48 | |
| PRK04286 | 298 | hypothetical protein; Provisional | 99.48 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.42 | |
| COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactam | 99.41 | |
| PF00753 | 194 | Lactamase_B: Metallo-beta-lactamase superfamily; I | 99.34 | |
| PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provis | 99.32 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 99.24 | |
| TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members | 99.24 | |
| PLN02469 | 258 | hydroxyacylglutathione hydrolase | 99.22 | |
| TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me | 99.22 | |
| PLN02398 | 329 | hydroxyacylglutathione hydrolase | 99.21 | |
| PLN02962 | 251 | hydroxyacylglutathione hydrolase | 99.17 | |
| KOG1361 | 481 | consensus Predicted hydrolase involved in interstr | 99.14 | |
| PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 99.14 | |
| COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylase | 99.08 | |
| PF13483 | 163 | Lactamase_B_3: Beta-lactamase superfamily domain; | 99.07 | |
| PF07521 | 43 | RMMBL: RNA-metabolising metallo-beta-lactamase; In | 99.05 | |
| COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase | 98.93 | |
| PRK11539 | 755 | ComEC family competence protein; Provisional | 98.9 | |
| COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase s | 98.88 | |
| TIGR00361 | 662 | ComEC_Rec2 DNA internalization-related competence | 98.88 | |
| COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactam | 98.84 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 98.84 | |
| COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lact | 98.82 | |
| KOG0813 | 265 | consensus Glyoxylase [General function prediction | 98.8 | |
| KOG2121 | 746 | consensus Predicted metal-dependent hydrolase (bet | 98.63 | |
| COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superf | 98.45 | |
| PF02112 | 335 | PDEase_II: cAMP phosphodiesterases class-II; Inter | 98.44 | |
| PF14597 | 199 | Lactamase_B_5: Metallo-beta-lactamase superfamily; | 97.24 | |
| KOG3798 | 343 | consensus Predicted Zn-dependent hydrolase (beta-l | 97.08 | |
| KOG0814 | 237 | consensus Glyoxylase [General function prediction | 96.78 | |
| COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal t | 96.68 | |
| PF13691 | 63 | Lactamase_B_4: tRNase Z endonuclease | 95.97 | |
| KOG4736 | 302 | consensus Uncharacterized conserved protein [Funct | 95.32 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 93.53 | |
| COG2015 | 655 | Alkyl sulfatase and related hydrolases [Secondary | 92.92 | |
| KOG3592 | 934 | consensus Microtubule-associated proteins [Cytoske | 91.74 |
| >KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-146 Score=1184.60 Aligned_cols=695 Identities=48% Similarity=0.851 Sum_probs=613.5
Q ss_pred EEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCccEEEecCCchhhhCchHHHHHhcCCCccE
Q 004964 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (721)
Q Consensus 5 m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g~~~~I 84 (721)
++++.+.|..++++-||+|++||.+|||||||+..++...++++...+++||+|||||+.+-|+|||||++.+++.++||
T Consensus 2 i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~V 81 (764)
T KOG1135|consen 2 IKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPV 81 (764)
T ss_pred eeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceE
Confidence 67788889999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred EechhhHhhhhccchHhhhcCCC------------------eEEecCCCEEEeccccCCeEEEEecCCCccCceEEEEEE
Q 004964 85 FSTEPVYRLGLLTMYDQYLSRRS------------------VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 146 (721)
Q Consensus 85 y~T~pt~~l~~~~l~d~~~~~~~------------------i~~v~y~q~~~l~~~~~gl~it~~~aGH~~Gs~~~~I~~ 146 (721)
|+|.|+.+||+++++|.++++.+ +.+++|+|++.+.+++.|++|++|+|||++|++.|+|..
T Consensus 82 YAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k 161 (764)
T KOG1135|consen 82 YATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISK 161 (764)
T ss_pred EEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEe
Confidence 99999999999999999987432 899999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCcCccccCcccccccCCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhcCCeEEEeccCchHHHH
Q 004964 147 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 225 (721)
Q Consensus 147 ~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~gG~VLIP~~~~GR~qE 225 (721)
.+++|+|+.||||.+++||+|..++.+.||.+|||++.+....+++|+.|+ .|++.|.+++++||+||||++.+||++|
T Consensus 162 ~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvLE 241 (764)
T KOG1135|consen 162 VGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLE 241 (764)
T ss_pred cCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHHH
Confidence 999999999999999999999999999999999999999998889999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCCCCCCCCCeEEcCChHHHhccCCCCc
Q 004964 226 LLLILEDYWAEH--SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 302 (721)
Q Consensus 226 ll~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~~PF~~~~~~~~~s~~e~~~~~~~p~ 302 (721)
|+.+|+++|.+. ++ .+||+++|+.+.++++|+++|+|||++++.+.|+.++.|||.|+|+.+|++..++.++.++|+
T Consensus 242 La~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gpk 321 (764)
T KOG1135|consen 242 LALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGPK 321 (764)
T ss_pred HHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCCe
Confidence 999999999987 56 699999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCC-CceeeecceEEecchhhHHHHHHHHHHHH
Q 004964 303 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYEEEQTRLK 381 (721)
Q Consensus 303 Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~~gT~g~~L~~~~~~-~~v~~~~~~~v~L~g~el~~y~~~~~~~~ 381 (721)
||+||..+|++|+|+++|..|++||+|.|+||.+.+++|++|.++..+.. +.+.+.+.+|++|+|+||.+|++.+ +.+
T Consensus 322 VVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e-~~r 400 (764)
T KOG1135|consen 322 VVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGE-RLR 400 (764)
T ss_pred EEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhh-hhh
Confidence 99999999999999999999999999999999999999999999866444 8899999999999999999999986 355
Q ss_pred HHHHHHhhhhhhhc---cccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCc
Q 004964 382 KEEALKASLVKEEE---SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNS 458 (721)
Q Consensus 382 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~ 458 (721)
.|+++.+....+.+ +.+||++||++ +..+....|.. +.+.+..++ ++||++++++++||||+|+|+
T Consensus 401 ~e~~~~~~~~~~~~~~~~~~Sd~~dd~d----~~~~~~~~Hd~----~~~~~~~~~---~~f~~~~~~~~~MFPy~e~r~ 469 (764)
T KOG1135|consen 401 NEDALRLNVNRDVEIDSSHESDDSDDED----MENDTEVRHDI----MSKAGKSTK---DGFFKSAKSKHPMFPYIEERR 469 (764)
T ss_pred hhhhHHhhccCCccccccccCCcccccc----cccccccchhh----hhccCCccc---ccccccccccCcccCCcHHhc
Confidence 55554444433322 22333333322 33333333321 111122222 678999999999999999999
Q ss_pred ccCCcCcccCCCcccc-ccccchhhhhccCCCCCCCCcc-----cccccccCCCceEEEeeeEEEEEEEEEEEecccccC
Q 004964 459 EWDDFGEVINPDDYII-KDEDMDQAAMHIGGDDGKLDEG-----SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 532 (721)
Q Consensus 459 ~~DdYGe~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D 532 (721)
|||||||+|+|+||.. .++.++.+.........++.++ +.+....+.|+||++....+.|+|+|.+||++|++|
T Consensus 470 k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGisD 549 (764)
T KOG1135|consen 470 KWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGISD 549 (764)
T ss_pred cccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeecccc
Confidence 9999999999999944 4444444432221111122222 123345789999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhccC--CceeecCCCcEEEEceeeeEEEEEeChhhhhcccceecCC
Q 004964 533 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC--PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 610 (721)
Q Consensus 533 ~rsl~~ii~~l~PrkliLv~g~~~~~~~l~~~~~~~~~--~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~~~~ 610 (721)
+||+++|+++|+||+||||||+.++++.|+..|....+ ++||+|+.||+|++|+++++|+|+|+|.|++.|.|+++++
T Consensus 550 grSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~~ 629 (764)
T KOG1135|consen 550 GRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVGD 629 (764)
T ss_pred chhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeeccc
Confidence 99999999999999999999999999999999998654 8999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecc--------------------------------cCccccccCCCC-CCCCCCceEEccccccchHHHH
Q 004964 611 YEIAWVDAEVGKT--------------------------------ENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFL 657 (721)
Q Consensus 611 ~~va~v~g~l~~~--------------------------------~~~~~~l~p~~~-~~~~~~~~~iGd~rL~~lk~~L 657 (721)
.+||||+|+|... +...++|+|+.. .+|.|++++|||+||++|||.|
T Consensus 630 ~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~~~~P~h~~v~igd~rLadfKq~L 709 (764)
T KOG1135|consen 630 AEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPGAEIPRHQAVLIGDLRLADFKQLL 709 (764)
T ss_pred ceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCcccCCcccceeecChhHHHHHHHH
Confidence 9999999999311 023578888765 5677999999999999999999
Q ss_pred HhCCCceEEeC-cEEEECCeEEEEEcCCCCCCCCCCCcceEEEEcCCChhHHHHHHHHhhccccC
Q 004964 658 SSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 721 (721)
Q Consensus 658 ~~~g~~aeF~g-G~Lv~~~~V~vrk~~~~~~~~~~~~~g~i~ieG~~~~~yy~Vr~~iy~~~~~~ 721 (721)
+++|++|||+| |+|+|||+|+|||+.+ |+|.|||++|++||+||+++|+|||+|
T Consensus 710 ~~kgi~aEf~ggglL~~~g~VavRk~d~----------G~i~ieG~lse~fy~iR~lvYdq~A~v 764 (764)
T KOG1135|consen 710 TEKGIQAEFKGGGLLVCNGCVAVRKVDT----------GKITIEGCLSEDFYKIRDLVYDQLAVV 764 (764)
T ss_pred HhCCeEEEEecCcEEEECCEEEEEEcCC----------ceEEEeccchHHHHHHHHHHHHHhhcC
Confidence 99999999999 8999999999999977 999999999999999999999999986
|
|
| >COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00649 MG423 conserved hypothetical protein | Back alignment and domain information |
|---|
| >KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal | Back alignment and domain information |
|---|
| >COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease | Back alignment and domain information |
|---|
| >PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
|---|
| >TIGR02651 RNase_Z ribonuclease Z | Back alignment and domain information |
|---|
| >TIGR02649 true_RNase_BN ribonuclease BN | Back alignment and domain information |
|---|
| >PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
|---|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
| >PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A | Back alignment and domain information |
|---|
| >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B | Back alignment and domain information |
|---|
| >smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
|---|
| >PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] | Back alignment and domain information |
|---|
| >PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
|---|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
| >TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PLN02469 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type | Back alignment and domain information |
|---|
| >PLN02398 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PLN02962 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A | Back alignment and domain information |
|---|
| >PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11539 ComEC family competence protein; Provisional | Back alignment and domain information |
|---|
| >COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 | Back alignment and domain information |
|---|
| >COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0813 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 | Back alignment and domain information |
|---|
| >PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B | Back alignment and domain information |
|---|
| >KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0814 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13691 Lactamase_B_4: tRNase Z endonuclease | Back alignment and domain information |
|---|
| >KOG4736 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 721 | ||||
| 2i7t_A | 459 | Structure Of Human Cpsf-73 Length = 459 | 7e-34 | ||
| 2i7x_A | 717 | Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 | 5e-28 | ||
| 3af5_A | 651 | The Crystal Structure Of An Archaeal Cpsf Subunit, | 1e-19 | ||
| 2xr1_A | 640 | Dimeric Archaeal Cleavage And Polyadenylation Speci | 2e-16 | ||
| 2ycb_A | 636 | Structure Of The Archaeal Beta-Casp Protein With N- | 1e-14 | ||
| 3ie1_A | 431 | Crystal Structure Of H380a Mutant Ttha0252 From The | 5e-14 | ||
| 3ie2_A | 431 | Crystal Structure Of H400v Mutant Ttha0252 From The | 5e-14 | ||
| 3idz_A | 431 | Crystal Structure Of S378q Mutant Ttha0252 From The | 6e-14 | ||
| 3iek_A | 431 | Crystal Structure Of Native Ttha0252 From Thermus T | 6e-14 | ||
| 3a4y_A | 431 | Crystal Structure Of H61a Mutant Ttha0252 From Ther | 6e-14 | ||
| 3ie0_A | 431 | Crystal Structure Of S378y Mutant Ttha0252 From The | 6e-14 | ||
| 2dkf_A | 431 | Crystal Structure Of Ttha0252 From Thermus Thermoph | 1e-13 | ||
| 1vme_A | 410 | Crystal Structure Of Flavoprotein (Tm0755) From The | 3e-04 |
| >pdb|2I7T|A Chain A, Structure Of Human Cpsf-73 Length = 459 | Back alignment and structure |
|
| >pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 | Back alignment and structure |
| >pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 | Back alignment and structure |
| >pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity Factor With N-Terminal Kh Domains (Kh-Cpsf) From Methanosarcina Mazei Length = 640 | Back alignment and structure |
| >pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636 | Back alignment and structure |
| >pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Length = 431 | Back alignment and structure |
| >pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8, A Rna Degradation Protein Of The Metallo-Beta-Lactamase Superfamily Length = 431 | Back alignment and structure |
| >pdb|1VME|A Chain A, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga Maritima At 1.80 A Resolution Length = 410 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 | Back alignment and structure |
|---|
Score = 463 bits (1193), Expect = e-154
Identities = 139/705 (19%), Positives = 253/705 (35%), Gaps = 145/705 (20%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77
+V D LID GWN ++ KV ID ++LS P LGA
Sbjct: 18 SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNF 77
Query: 78 ---LGLSAPVFSTEPVYRLGLLTMYDQYLSRR--------------------SVTRLTYS 114
V++T PV LG ++ D Y S + L YS
Sbjct: 78 TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYS 137
Query: 115 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------ 168
Q L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 138 QLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDAT 197
Query: 169 --VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 226
L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+ L+L
Sbjct: 198 GKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDL 257
Query: 227 LLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAF 280
+ + E + P+ L+Y T+ Y KS LEW+ S+ K++E + + F
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--- 337
+ +I +EL P G K+ S +++ ++ + K ++ T+
Sbjct: 318 EIGSRIKIIAPNELSKYP-GSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFEC 373
Query: 338 ----------------QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 381
+ T ++ + + + PL EE A++ + K
Sbjct: 374 ASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKK 433
Query: 382 KEEALKASLVKEEESKASLG----PDNNLSGDPMVIDANNANASADVVEPH--------- 428
++ K LVK E K + G D N D N + H
Sbjct: 434 RDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVENVNGVPPIDHIMGGDEDDD 493
Query: 429 --------------------GGRYRDILIDGFVPPS-TSVAPMFPFYENNSEWDDFGEVI 467
+ ++ +D + PS S MFPF + DD+G V+
Sbjct: 494 EEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIKKDDYGTVV 553
Query: 468 NPDDYIIKDE-----------------------------------------------DMD 480
+ ++ D
Sbjct: 554 DFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRAS 613
Query: 481 QAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 540
+ + G + + + L +D SK + + VQ+KC ++ ++ + D RS I
Sbjct: 614 RYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIW 673
Query: 541 SHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT 585
+ K+VL E + +K V + + ++ +
Sbjct: 674 PSLKSRKIVLSAPKQIQNEEITAKLIKKNIE-VVNMPLNKIVEFS 717
|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 | Back alignment and structure |
|---|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284 | Back alignment and structure |
|---|
| >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| 2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase | 100.0 | |
| 3iek_A | 431 | Ribonuclease TTHA0252; metallo beta lactamase fold | 100.0 | |
| 2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 | 100.0 | |
| 3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal | 100.0 | |
| 2ycb_A | 636 | Beta-CAsp RNAse, cleavage and polyadenylation spec | 100.0 | |
| 2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 | 100.0 | |
| 3zq4_A | 555 | Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat | 100.0 | |
| 3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclea | 100.0 | |
| 2az4_A | 429 | Hypothetical protein EF2904; structural genomics, | 100.0 | |
| 4b87_A | 367 | DNA cross-LINK repair 1A protein; dclre1A, DCLRE, | 99.92 | |
| 3zdk_A | 336 | 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A | 99.88 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 99.79 | |
| 3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosph | 99.78 | |
| 2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase t | 99.78 | |
| 1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase, hy | 99.77 | |
| 3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural | 99.7 | |
| 3zwf_A | 368 | Zinc phosphodiesterase ELAC protein 1; beta-lactam | 99.7 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 99.69 | |
| 3kl7_A | 235 | Putative metal-dependent hydrolase; structural gen | 99.66 | |
| 3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta prote | 99.64 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 99.58 | |
| 3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetall | 99.56 | |
| 2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, | 99.54 | |
| 3m8t_A | 294 | 'BLR6230 protein; subclass B3 beta-lactamase, zinc | 99.53 | |
| 1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA | 99.52 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 99.52 | |
| 3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotic | 99.51 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 99.49 | |
| 2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A | 99.49 | |
| 1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, | 99.48 | |
| 3esh_A | 280 | Protein similar to metal-dependent hydrolase; stru | 99.48 | |
| 3aj3_A | 274 | MLR6805 protein, 4-pyridoxolactonase; Zn-protein, | 99.48 | |
| 2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrol | 99.47 | |
| 3adr_A | 261 | Putative uncharacterized protein ST1585; quorum se | 99.47 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.46 | |
| 1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alph | 99.46 | |
| 4hl2_A | 243 | Beta-lactamase NDM-1; structural genomics, PSI-bio | 99.45 | |
| 4efz_A | 298 | Metallo-beta-lactamase family protein; structural | 99.44 | |
| 2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alph | 99.43 | |
| 2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethyl | 99.43 | |
| 1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd | 99.42 | |
| 1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase) | 99.42 | |
| 3tp9_A | 474 | Beta-lactamase and rhodanese domain protein; struc | 99.41 | |
| 2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- super | 99.41 | |
| 1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hyd | 99.4 | |
| 1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A { | 99.39 | |
| 4ax1_B | 303 | Metallo-beta-lactamase AIM-1; hydrolase, antibioti | 99.38 | |
| 1xm8_A | 254 | Glyoxalase II; structural genomics, protein struct | 99.38 | |
| 4ad9_A | 289 | Lactb2, beta-lactamase-like protein 2; hydrolase, | 99.38 | |
| 1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase s | 99.38 | |
| 2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ ch | 99.38 | |
| 2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; | 99.37 | |
| 1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, a | 99.36 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.35 | |
| 3q6v_A | 233 | Beta-lactamase; metalloenzyme, alpha-beta, hydrola | 99.35 | |
| 3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein | 99.34 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.34 | |
| 2y8b_A | 265 | Metallo-B-lactamase; hydrolase, cephalosporins, an | 99.33 | |
| 2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, s | 99.33 | |
| 3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, | 99.33 | |
| 2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, ant | 99.32 | |
| 3r2u_A | 466 | Metallo-beta-lactamase family protein; structural | 99.3 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 99.3 | |
| 1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactama | 99.29 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 99.28 | |
| 4eyb_A | 270 | Beta-lactamase NDM-1; metallo beta lactamase, anti | 99.22 | |
| 2p97_A | 201 | Hypothetical protein; putative metal-dependent hyd | 99.14 | |
| 2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 | 98.91 | |
| 2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase s | 98.8 | |
| 2yhe_A | 668 | SEC-alkyl sulfatase; hydrolase, inversion, metallo | 98.2 | |
| 3h3e_A | 267 | Uncharacterized protein TM1679; structural genomic | 98.33 |
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-92 Score=831.13 Aligned_cols=568 Identities=23% Similarity=0.373 Sum_probs=376.7
Q ss_pred EEEEEeecCCCC-CCcEEEEEECCeEEEEeCCCCCCC-C-cccCccccCCCCCccEEEecCCchhhhCchHHHHHhcC--
Q 004964 5 VQVTPLSGVFNE-NPLSYLVSIDGFNFLIDCGWNDHF-D-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG-- 79 (721)
Q Consensus 5 m~~t~lgG~~~~-g~s~~ll~~~~~~ILiDcG~~~~~-~-~~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~g-- 79 (721)
|+|++|+|+.+. +++||+|+.++.+||||||+.... . ...+..+.....+||+|||||+|.||+||+|+|.++++
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g 80 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred CEEEEEeecCCCCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhc
Confidence 478888766554 999999999999999999997531 0 10111222223489999999999999999999997532
Q ss_pred --CCccEEechhhHhhhhccchHhhhcC--------------------CCeEEecCCCEEEeccccCCeEEEEecCCCcc
Q 004964 80 --LSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 137 (721)
Q Consensus 80 --~~~~Iy~T~pt~~l~~~~l~d~~~~~--------------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~ 137 (721)
.++|||+|.+|..+++.++.+.+... ..+++++|++.+.+.++.++++|+++++||++
T Consensus 81 ~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred ccCCceEEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCC
Confidence 37899999999998887766543211 13688999999998322368999999999999
Q ss_pred CceEEEEEECCeEEEEEecCCCcCccccCcccc--------cccCCCcEEEeecccccccCCCcchHHHHHHHHHHHHhc
Q 004964 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 209 (721)
Q Consensus 138 Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l--------~~l~~~d~LI~est~~~~~~~~r~~~e~l~~~I~~~l~~ 209 (721)
|+++|+|+.++++|+||||+++..+.++.++.+ ..+.++|+||+||+|+...++.+...+.|++.|.+++++
T Consensus 161 Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~h~~~~~~~~l~~~i~~~l~~ 240 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (717)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CcEEEEEEeCCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988887766543 345689999999999988777654233999999999999
Q ss_pred CCeEEEeccCchHHHHHHHHHHHHH-H---hcCC-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHhcCC--CCCC-
Q 004964 210 GGNVLLPVDSAGRVLELLLILEDYW-A---EHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--NAFL- 281 (721)
Q Consensus 210 gG~VLIP~~~~GR~qEll~~L~~~~-~---~~~l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~~~~--~PF~- 281 (721)
+|+|+||+|++||+|||+++|.++| + .+.+ ++|||++++++.+++++|+.+++||+..+.+.|.. ++ +||.
T Consensus 241 ~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~-~~~~~pf~~ 319 (717)
T 2i7x_A 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWEN-RNNTSPFEI 319 (717)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHS-SSSCCTTCC
T ss_pred CCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHHHHhc-ccccCCccc
Confidence 9999999999999999999999998 2 3344 78999999999999999999999999998887765 44 5999
Q ss_pred CCCeEEcCChHHHhccCCCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEecCCC-CCChhHHHhcC--C--------
Q 004964 282 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-FGTLARMLQAD--P-------- 350 (721)
Q Consensus 282 ~~~~~~~~s~~e~~~~~~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iiltg~~~-~gT~g~~L~~~--~-------- 350 (721)
|+++++ .+.+++.++ ++|+||+||. .+|+++++|++|++||+|+|||||||+ +||+||+|+.. .
T Consensus 320 ~~~l~~-~~~~~l~~~-~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~~~~~~~~~~~~~ 394 (717)
T 2i7x_A 320 GSRIKI-IAPNELSKY-PGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTF 394 (717)
T ss_dssp TTTEEE-CCGGGGGGC-CSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC------
T ss_pred cccCcc-CCHHHHhhC-CCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHhhhhhhccccccc
Confidence 899998 778888776 6799888866 899999999999999999999999999 69999999742 1
Q ss_pred --------CCCceeeecceEEecchhhHHHHHHHHHHHHHH-HHHHh-----------------hhhhhhccc-------
Q 004964 351 --------PPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE-EALKA-----------------SLVKEEESK------- 397 (721)
Q Consensus 351 --------~~~~v~~~~~~~v~L~g~el~~y~~~~~~~~~~-~~~~~-----------------~~~~~~~~~------- 397 (721)
.++.++++..+|+||+|+||++|+++++.++++ .++.+ +...+++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (717)
T 2i7x_A 395 PEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVE 474 (717)
T ss_dssp --CCCCEECCEEEEEEEEEEEESCSCCC----------------------------------------------------
T ss_pred ccccccccCCceEEEEEeeeccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccc
Confidence 127899999999999999999999987422221 11111 111111211
Q ss_pred -------------cCCCCCCCC--CCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCC
Q 004964 398 -------------ASLGPDNNL--SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDD 462 (721)
Q Consensus 398 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~~~~~Dd 462 (721)
++|++|+++ +.+...+....+... .......++||++.++. +++++||||+++|+||||
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~---~~~~~mFP~~~~~~k~Dd 548 (717)
T 2i7x_A 475 NVNGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSA---AKKNTEVPVDIIIQPSA---ASKHKMFPFNPAKIKKDD 548 (717)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccchhhcccccccccccc---ccccccCcceeeecccc---CCccCcCCcccCcccccC
Confidence 111111111 011111111111100 00112344689887663 457899999999999999
Q ss_pred cCcccCCCccccccccchh---hhh--------------c-c-CCCCCCCCcc---------------------ccc---
Q 004964 463 FGEVINPDDYIIKDEDMDQ---AAM--------------H-I-GGDDGKLDEG---------------------SAS--- 499 (721)
Q Consensus 463 YGe~i~~~~~~~~~~~~~~---~~~--------------~-~-~~~~~~~~~~---------------------~~~--- 499 (721)
|||+||||||+++++..+. +.. + . ...+.++++. +.+
T Consensus 549 yGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (717)
T 2i7x_A 549 YGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENFD 628 (717)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred CCCccCHHHhehhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999998864421 000 0 0 0000011100 000
Q ss_pred ----ccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhccCCceee
Q 004964 500 ----LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYT 575 (721)
Q Consensus 500 ----~~~~~~P~K~~~~~~~v~v~c~v~~id~~g~~D~rsl~~ii~~l~PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~ 575 (721)
....+.|+|||+++.+|+|||+|+||||||++|+|||++|||+++|||||||||+++++++|+++|++. +.+||+
T Consensus 629 ~~~~~~~~~~P~K~v~~~~~v~~~c~v~fiD~~g~~D~rs~~~i~~~~~Prklilv~g~~~~~~~l~~~~~~~-~~~v~~ 707 (717)
T 2i7x_A 629 NLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVN 707 (717)
T ss_dssp CCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHT-TCEEEE
T ss_pred cchhhhccCCCeEEEEeeEEEEEEEEEEEEecCCCCcHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHHHHhc-CCeEEe
Confidence 013579999999999999999999999999999999999999999999999999999999999999864 789999
Q ss_pred cCCCcEEEEc
Q 004964 576 PQIEETIDVT 585 (721)
Q Consensus 576 P~~ge~v~~~ 585 (721)
|.+||+|++.
T Consensus 708 p~~~e~v~~~ 717 (717)
T 2i7x_A 708 MPLNKIVEFS 717 (717)
T ss_dssp CCSSCCEEEC
T ss_pred CCCCCeecCC
Confidence 9999999974
|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* | Back alignment and structure |
|---|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A | Back alignment and structure |
|---|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
|---|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
|---|
| >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* | Back alignment and structure |
|---|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A | Back alignment and structure |
|---|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A | Back alignment and structure |
|---|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
|---|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
|---|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A | Back alignment and structure |
|---|
| >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
|---|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
|---|
| >4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
|---|
| >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... | Back alignment and structure |
|---|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
|---|
| >3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 | Back alignment and structure |
|---|
| >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
|---|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
|---|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B | Back alignment and structure |
|---|
| >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
|---|
| >4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
|---|
| >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
|---|
| >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
| >3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
|---|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
|---|
| >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A | Back alignment and structure |
|---|
| >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
|---|
| >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} | Back alignment and structure |
|---|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 721 | ||||
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 3e-69 | |
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 3e-19 | |
| d2dkfa1 | 431 | d.157.1.10 (A:1-431) Putative RNA-degradation prot | 2e-37 | |
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 2e-33 | |
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 5e-05 | |
| d1vmea2 | 250 | d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, | 3e-05 | |
| d2az4a1 | 183 | d.157.1.10 (A:56-238) Hypothetical protein EF2904 | 0.001 | |
| d2gmna1 | 264 | d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Br | 0.002 | |
| d1wraa1 | 305 | d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi | 0.002 | |
| d1zkpa1 | 244 | d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B | 0.004 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 233 bits (595), Expect = 3e-69
Identities = 95/417 (22%), Positives = 171/417 (41%), Gaps = 50/417 (11%)
Query: 21 YLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77
+V D LID GWN ++ KV ID ++LS P LGA
Sbjct: 18 SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNF 77
Query: 78 ---LGLSAPVFSTEPVYRLGLLTMYDQYLSRRS--------------------VTRLTYS 114
V++T PV LG ++ D Y S + L YS
Sbjct: 78 TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYS 137
Query: 115 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------ 168
Q L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 138 QLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDAT 197
Query: 169 --VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 226
L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+ L+L
Sbjct: 198 GKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDL 257
Query: 227 LLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD-NAF 280
+ + E + P+ L+Y T+ Y KS LEW+ S+ K++E + + F
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317
Query: 281 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--Q 338
+ +I +EL + G K+ S +++ ++ + K ++ T+
Sbjct: 318 EIGSRIKIIAPNEL-SKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFEC 373
Query: 339 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 395
+L ++L+ + P G+ + KEE L +
Sbjct: 374 ASSLDKILEI----VEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNFDN 426
|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 | Back information, alignment and structure |
|---|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 721 | |||
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 100.0 | |
| d2dkfa1 | 431 | Putative RNA-degradation protein TTHA0252 {Thermus | 100.0 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 100.0 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 99.78 | |
| d2az4a1 | 183 | Hypothetical protein EF2904 {Enterococcus faecalis | 99.73 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 99.59 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 99.57 | |
| d1p9ea_ | 294 | Methyl parathion hydrolase {Pseudomonas sp. WBC-3 | 99.46 | |
| d1k07a_ | 262 | Zn metallo-beta-lactamase {Fluoribacter gormanii, | 99.44 | |
| d2aioa1 | 266 | Zn metallo-beta-lactamase {Xanthomonas maltophilia | 99.4 | |
| d1ztca1 | 207 | Hypothetical protein TM0894 {Thermotoga maritima [ | 99.38 | |
| d2gmna1 | 264 | Zn metallo-beta-lactamase {Bradyrhizobium japonicu | 99.33 | |
| d2q0ia1 | 298 | Quinolone signal response protein PqsE {Pseudomona | 99.31 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 99.31 | |
| d1xtoa_ | 304 | Coenzyme PQQ synthesis protein B, PqqB {Pseudomona | 99.26 | |
| d1x8ha_ | 228 | Zn metallo-beta-lactamase {Aeromonas hydrophila, C | 99.25 | |
| d1wraa1 | 305 | Teichoic acid phosphorylcholine esterase Pce (LytD | 99.23 | |
| d1ko3a_ | 230 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 99.19 | |
| d1qh5a_ | 260 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.18 | |
| d1e5da2 | 249 | Rubredoxin oxygen:oxidoreductase (ROO), N-terminal | 99.18 | |
| d1mqoa_ | 221 | Zn metallo-beta-lactamase {Bacillus cereus [TaxId: | 99.17 | |
| d1ycga2 | 249 | Nitric oxide reductase N-terminal domain {Moorella | 99.16 | |
| d1xm8a_ | 254 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.16 | |
| d1vjna_ | 209 | Hypothetical protein TM0207 {Thermotoga maritima [ | 99.15 | |
| d1m2xa_ | 219 | Zn metallo-beta-lactamase {Chryseobacterium mening | 99.14 | |
| d2qeda1 | 251 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.13 | |
| d1jjta_ | 220 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 99.11 | |
| d1znba_ | 230 | Zn metallo-beta-lactamase {Bacteroides fragilis [T | 98.98 | |
| d1vmea2 | 250 | ROO-like flavoprotein TM0755, N-terminal domain {T | 98.97 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 98.82 | |
| d2p97a1 | 200 | Hypothetical protein Ava3068 {Anabaena variabilis | 98.42 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.9e-76 Score=666.63 Aligned_cols=471 Identities=23% Similarity=0.383 Sum_probs=392.6
Q ss_pred eEEEEEeecCCCCCCcEEEEEECCeEEEEeCCCCCCCCc--ccCccccCCCCCccEEEecCCchhhhCchHHHHHhc---
Q 004964 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL--- 78 (721)
Q Consensus 4 ~m~~t~lgG~~~~g~s~~ll~~~~~~ILiDcG~~~~~~~--~~l~~l~~~~~~Id~IlLTH~H~DHiGgLp~L~~~~--- 78 (721)
.+++++++ .++.+.+|+||+.++.+|||||||+++... ..+..+...+++||+|||||+|.||+||||+|+++.
T Consensus 2 ~~~~~~~~-~g~g~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~ 80 (514)
T d2i7xa1 2 TYKYNCCD-DGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (514)
T ss_dssp CEEEEECC-SSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred eEEEEEec-CCCceeeEEEEEECCeEEEEECCCCcCccchhhhhhhhhcCcccCCEEEECCCChHHHCchHHHHHhcccc
Confidence 46777763 333477999999999999999999876532 234456667889999999999999999999998642
Q ss_pred -CCCccEEechhhHhhhhccchHhhhcC--------------------CCeEEecCCCEEEeccccCCeEEEEecCCCcc
Q 004964 79 -GLSAPVFSTEPVYRLGLLTMYDQYLSR--------------------RSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 137 (721)
Q Consensus 79 -g~~~~Iy~T~pt~~l~~~~l~d~~~~~--------------------~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~~ 137 (721)
++++|||||+||+++++.++.|.+... ..+.+++|+|++.+.+...++++++++|||++
T Consensus 81 ~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHil 160 (514)
T d2i7xa1 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (514)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred cCCCcCEEeCHHHHHHHHHHHHHHHHHhhhhcccccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCC
Confidence 468999999999999999998876432 12789999999999755668999999999999
Q ss_pred CceEEEEEECCeEEEEEecCCCcCccccCccccccc-------CCCcEEEeecccccccCCCcchHH-HHHHHHHHHHhc
Q 004964 138 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF-------VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 209 (721)
Q Consensus 138 Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l-------~~~d~LI~est~~~~~~~~r~~~e-~l~~~I~~~l~~ 209 (721)
||++|.|+.++++|+|||||++.++++++++.+... ...|.++++++|+...++++..++ .|++.|.+++++
T Consensus 161 Gsa~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~~~~~~~~~~~~l~~~i~~~~~~ 240 (514)
T d2i7xa1 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (514)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CceEEEEEECCeEEEEEeccCCCCCccCCCccccccccccccccCCCEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988765321 234556666666666667787777 999999999999
Q ss_pred CCeEEEeccCchHHHHHHHHHHHHHHhcC----C-CccEEEEccchHHHHHHHHHHHhhhCHHHHHHHHh-cCCCCCCCC
Q 004964 210 GGNVLLPVDSAGRVLELLLILEDYWAEHS----L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAFLLK 283 (721)
Q Consensus 210 gG~VLIP~~~~GR~qEll~~L~~~~~~~~----l-~~pI~~~s~~a~~~~~~~~~~~Ewl~~~~~~~~~~-~~~~PF~~~ 283 (721)
||+||||+|++||+|||+.+|+++|++.. + ++|||++++++.+++++|+.++|||++++.+.|.. .+.+||.|+
T Consensus 241 gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~ 320 (514)
T d2i7xa1 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIG 320 (514)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCT
T ss_pred CCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHHhHhhcCHHHHHHHhhhcCCCchhcc
Confidence 99999999999999999999999998653 2 78999999999999999999999999999998875 357899999
Q ss_pred CeEEcCChHHHhccCCCCcEEEEcCCCCCcchHHHHHHHHcCCCCCeEEEe--cCCCCCChhHHHhcCCCCCceeeecce
Q 004964 284 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT--ERGQFGTLARMLQADPPPKAVKVTMSR 361 (721)
Q Consensus 284 ~~~~~~s~~e~~~~~~~p~Vi~as~~~L~~G~s~~~l~~~~~~~~n~Iilt--g~~~~gT~g~~L~~~~~~~~v~~~~~~ 361 (721)
+++.+.+.+++.++ ++|||||||++| |+++++|++|++||+|+|+|| ||+.++|+|+.+++.
T Consensus 321 ~~~~i~~~~~l~~~-~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~------------ 384 (514)
T d2i7xa1 321 SRIKIIAPNELSKY-PGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIV------------ 384 (514)
T ss_dssp TTEEECCGGGGGGC-CSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHH------------
T ss_pred CceeccCHHHHHhc-cCCcEEEEcCCC---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHhhh------------
Confidence 99999999999887 899999999998 999999999999999999999 999999999988731
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccC
Q 004964 362 RVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFV 441 (721)
Q Consensus 362 ~v~L~g~el~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~ 441 (721)
. .
T Consensus 385 --------------~-------------------------------~--------------------------------- 386 (514)
T d2i7xa1 385 --------------E-------------------------------Q--------------------------------- 386 (514)
T ss_dssp --------------H-------------------------------T---------------------------------
T ss_pred --------------h-------------------------------h---------------------------------
Confidence 0 0
Q ss_pred CCCCCCCCCCCccccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEE
Q 004964 442 PPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 521 (721)
Q Consensus 442 ~~~~~~~~mFP~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~ 521 (721)
......|||+...++++|+|+++...+.....++...- .+.......+.|+|+......+.|+|+
T Consensus 387 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~v~~~ 451 (514)
T d2i7xa1 387 --DERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNF-------------DNLDYLKIDKTLSKRTISTVNVQLKCS 451 (514)
T ss_dssp --CC--------CCCCEECCEEEEEEEEEEEESCSCCCCC-------------SCCGGGSCSSCCEEEEEEEEEEEECSE
T ss_pred --hccccccccccccccccCcceeecccccccccccccCc-------------ccccccccccccceeecccceEEEEEE
Confidence 00122688999999999999997666555444322110 011122345689999999999999999
Q ss_pred EEEEecccccCHHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhccCCceeecCCCcEEEEc
Q 004964 522 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT 585 (721)
Q Consensus 522 v~~id~~g~~D~rsl~~ii~~l~PrkliLv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~~ 585 (721)
|.++|||||+|+++|+.+++.++||++|||||+++++++||+.+++. +.+|++|.+||+|+++
T Consensus 452 v~~i~~SgHad~~el~~~~~~~~P~~vvlvHGe~~~~~~~a~~l~~~-g~~v~~p~~g~~ie~~ 514 (514)
T d2i7xa1 452 VVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVNMPLNKIVEFS 514 (514)
T ss_dssp EEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHT-TCEEEECCSSCCEEEC
T ss_pred EEEEEeeecCCHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHHHHC-CCeEEecCCCCEEeeC
Confidence 99999999999999999999999999999999999999999998765 8999999999999986
|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} | Back information, alignment and structure |
|---|
| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} | Back information, alignment and structure |
|---|
| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
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| >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} | Back information, alignment and structure |
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| >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} | Back information, alignment and structure |
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| >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
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| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
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