Citrus Sinensis ID: 004985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
MSAAAKTARSRAAAAAENGGAKIEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
ccccccHHHHHHHHHHHcccccHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHcc
ccccccccccccccccccccccHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccHHEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccc
MSAAAKTARSRAAAAAENGGAKIEEGlnlfksdkfdadvyvkskcslNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEgvhidslkgsesfaskndllnlenkepsdlekwsvefPDLLDVLLAERRIDEALTALDEGEHLAAEAKqtktldpaMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKlgdgprahsLLLNAHYQRYQYsmqslrpsstsyggaYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADdwvltyppmgtrqaSSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKAlpgsmeeeanfegsGNKIVRMAENEAQQIALLANASLLADEllpraamkvsplnqanykddprrrhsdrqnrnpeqrEWKRRLVISVDRLKDTFCRQHALDLiftedgdshlnADMYLnmdgnvdelewfpsLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQsfwddieegpkplgplglqqFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
MSAAAKTARSRAaaaaenggakieeglnlfksdkFDADVYVKSkcslnekeiRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKepsdlekwsvEFPDLLDVLLAERRIDEALTALDEGEHLAAeakqtktldpaMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRaamkvsplnqanykddprrrhsdrqnrnpeqrewkrrlviSVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
MsaaaktarsraaaaaENGGAKIEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHalassaaagglraaaECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
*************************GLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDS************************EKWSVEFPDLLDVLLAERRIDEALTALDEGEHL********TLDPAMLISLENTIIDRRQKL*******************AAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSL****TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGT*****MALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALP************************QQIALLANASLLADELL***********************************WKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFV***
*****************************FKSDKFDADVYVK**************SYLLDLKRASAEEMRKSVYANYAAFIRTSKEISD*****************************************************LEKWSVEFPDLLDVLLAERRIDEALTALDEGEH**************MLISLENTIIDRRQKLADQ******************ISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDW*******************RLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKAL***************KIVRMAENEAQQIALLANASLLADELLPRAAM*****************************EWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVK**
******************GGAKIEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLAD**************ELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHAL***********AAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANY******************REWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
*************************GLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHID*******************KEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPM***QASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLN******************NPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSAAAKTARSRAAAAAENGGAKIEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLHELSMRLYLKPWQHLLLLAWILIVCCLKMTGLMIFVKKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query721 2.2.26 [Sep-21-2011]
Q54VZ8815 Exocyst complex component yes no 0.477 0.422 0.194 5e-11
Q6PGF7716 Exocyst complex component yes no 0.361 0.364 0.265 4e-10
Q5U247685 Exocyst complex component N/A no 0.327 0.344 0.244 1e-09
Q5ZJ43708 Exocyst complex component yes no 0.328 0.334 0.252 2e-09
Q8IYI6725 Exocyst complex component yes no 0.328 0.326 0.250 4e-09
A4IF89725 Exocyst complex component yes no 0.328 0.326 0.254 6e-09
O54924716 Exocyst complex component yes no 0.361 0.364 0.261 6e-09
P0CN62675 Exocyst complex component yes no 0.098 0.105 0.361 6e-05
P0CN63675 Exocyst complex component N/A no 0.098 0.105 0.361 6e-05
Q5BFX0666 Exocyst complex component yes no 0.144 0.156 0.271 0.0008
>sp|Q54VZ8|EXOC8_DICDI Exocyst complex component 8 OS=Dictyostelium discoideum GN=exoc8 PE=3 SV=2 Back     alignment and function desciption
 Score = 70.5 bits (171), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 153/365 (41%), Gaps = 21/365 (5%)

Query: 30  FKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEIS 89
           F S+K+  D++        +++      YL + K    + ++K VY N+  FI  SKEI+
Sbjct: 115 FNSEKYVNDLFTHK----TDQQATVHLQYLENRKLGCIDHLKKDVYKNHLIFIGASKEIA 170

Query: 90  DLEGELSSIRNLLSTQATLIHGLAE-GVHIDSLKGSESFASKNDLLNLENKEP-SDLEKW 147
           + E ++   RNL+S    ++  L    +  D  K       K+  ++ E   P ++  +W
Sbjct: 171 NSEVDMLDFRNLISDYGNVMSSLQNISISWDHYK-----VKKSGKIDFEPLSPATEPIQW 225

Query: 148 SVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLA 207
               P+ L V + +R  + A+  +++   +     + + +       L++ I ++ + L 
Sbjct: 226 LTTAPNELSVSIEQREFEVAVGLVEKINKIYESNPKVEIVMQTH--PLKDQIENKVKILT 283

Query: 208 DQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYG 267
           D+L      P  +  +++  IS L +L    +A S+ L +       +++ +  S     
Sbjct: 284 DKLMNELRSPLLKANQIKDTISLLVRLSQNDKAKSIFLESRSHSINQAIKKIVFSGDL-- 341

Query: 268 GAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSA 327
             +   L++++F++I     D    F   +   S LV W   +    + +  R       
Sbjct: 342 NRFIGELARVIFNSINSTCNDFTNSFP--SYMNSGLVSWIIEELVLISDIFNRQVF---- 395

Query: 328 AAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMA 387
                 + ++ ++I   HC +++  GL++      L +P VEQ +     +I +S     
Sbjct: 396 ILDNFYSISQAIRIIESHCEMMDQTGLSIGFYWNLLLQPHVEQLIVNYEIKIRDSMLHQL 455

Query: 388 AADDW 392
             + W
Sbjct: 456 MDEKW 460
Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
Dictyostelium discoideum (taxid: 44689)
>sp|Q6PGF7|EXOC8_MOUSE Exocyst complex component 8 OS=Mus musculus GN=Exoc8 PE=1 SV=1 Back     alignment and function description
>sp|Q5U247|EXOC8_XENLA Exocyst complex component 8 OS=Xenopus laevis GN=exoc8 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ43|EXOC8_CHICK Exocyst complex component 8 OS=Gallus gallus GN=EXOC8 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYI6|EXOC8_HUMAN Exocyst complex component 8 OS=Homo sapiens GN=EXOC8 PE=1 SV=2 Back     alignment and function description
>sp|A4IF89|EXOC8_BOVIN Exocyst complex component 8 OS=Bos taurus GN=EXOC8 PE=2 SV=1 Back     alignment and function description
>sp|O54924|EXOC8_RAT Exocyst complex component 8 OS=Rattus norvegicus GN=Exoc8 PE=1 SV=1 Back     alignment and function description
>sp|P0CN62|EXO84_CRYNJ Exocyst complex component EXO84 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=EXO84 PE=3 SV=1 Back     alignment and function description
>sp|P0CN63|EXO84_CRYNB Exocyst complex component EXO84 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=EXO84 PE=3 SV=1 Back     alignment and function description
>sp|Q5BFX0|EXO84_EMENI Exocyst complex component exo84 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=exo84 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
225443280769 PREDICTED: exocyst complex component 8 [ 0.945 0.886 0.838 0.0
255568053761 conserved hypothetical protein [Ricinus 0.941 0.892 0.838 0.0
224110014779 predicted protein [Populus trichocarpa] 0.948 0.878 0.811 0.0
356526324768 PREDICTED: uncharacterized protein LOC10 0.975 0.915 0.778 0.0
356522153769 PREDICTED: uncharacterized protein LOC10 0.937 0.879 0.814 0.0
224097468768 predicted protein [Populus trichocarpa] 0.948 0.890 0.8 0.0
449447970765 PREDICTED: uncharacterized protein LOC10 0.944 0.890 0.797 0.0
449515827765 PREDICTED: uncharacterized LOC101213590 0.944 0.890 0.796 0.0
297795751751 hypothetical protein ARALYDRAFT_495042 [ 0.979 0.940 0.746 0.0
15240560752 exocyst complex component 84B [Arabidops 0.979 0.938 0.744 0.0
>gi|225443280|ref|XP_002273667.1| PREDICTED: exocyst complex component 8 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/693 (83%), Positives = 635/693 (91%), Gaps = 11/693 (1%)

Query: 4   AAKTARSRAAAAA-ENGGAKIEEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDL 62
           + K++RSR  AA  ENGGAK EE LN+FK+D FDAD Y++SKCSLNEKEIRQLCSYLLDL
Sbjct: 3   SVKSSRSRTVAAPRENGGAKFEENLNVFKTDHFDADSYLQSKCSLNEKEIRQLCSYLLDL 62

Query: 63  KRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLK 122
           K+ASAEEMR+SVYANYAAFIRTSKEISDLEGEL SIRNLLSTQ+ LIHGLAEGV+IDSL 
Sbjct: 63  KKASAEEMRRSVYANYAAFIRTSKEISDLEGELLSIRNLLSTQSGLIHGLAEGVNIDSLS 122

Query: 123 GSESFASK-NDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEA 181
            + S +S  N L N E++EPSDLEKW +EFPDLLDVLLAERR+DEAL ALDEGE +AAEA
Sbjct: 123 ITVSESSTPNGLSNSEDREPSDLEKWLIEFPDLLDVLLAERRVDEALEALDEGERVAAEA 182

Query: 182 KQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAH 241
            + KTL P  L SL+  I +RRQKLADQLAEAACQPSTRG ELRAAISALKKLGDGPRAH
Sbjct: 183 IEMKTLSPDTLTSLQTAITERRQKLADQLAEAACQPSTRGNELRAAISALKKLGDGPRAH 242

Query: 242 SLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTS 301
           +LLLNAHYQR+QY+MQSLRPSSTSYGGAYTAALSQLVFSAIAQAA DSLAIF KET+YTS
Sbjct: 243 TLLLNAHYQRFQYNMQSLRPSSTSYGGAYTAALSQLVFSAIAQAASDSLAIFSKETSYTS 302

Query: 302 ELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLI 361
           ELVMWAT+Q+EAFA LVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVL+
Sbjct: 303 ELVMWATKQSEAFALLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLL 362

Query: 362 KLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQA---SSMAL------QHR 412
           KLFRPSVEQALDANLKRIEESTAA+AAADDWVLTYPP GTRQ+   SSM+L       H+
Sbjct: 363 KLFRPSVEQALDANLKRIEESTAALAAADDWVLTYPPTGTRQSGRPSSMSLGNTTAFHHK 422

Query: 413 LTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANF 472
           L++SAHRFNLMVQDFFEDVGPLLSMQLGG+ LEGLFQVFNSYV++LIKALPGSMEEEANF
Sbjct: 423 LSSSAHRFNLMVQDFFEDVGPLLSMQLGGQTLEGLFQVFNSYVNLLIKALPGSMEEEANF 482

Query: 473 EGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQN 532
           EGSGNKIVRMAE E QQIALLANAS LADELLPRAAMK+SPLNQAN+KDDPRRR SDRQN
Sbjct: 483 EGSGNKIVRMAETEEQQIALLANASSLADELLPRAAMKLSPLNQANFKDDPRRRPSDRQN 542

Query: 533 RNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDELEWFP 592
           R+PEQREWKRRLV +VDRLKD+FC+QHALDLIFTE+GDS+L+ADMY+NMDGN DELEWFP
Sbjct: 543 RHPEQREWKRRLVSAVDRLKDSFCQQHALDLIFTEEGDSNLSADMYINMDGNADELEWFP 602

Query: 593 SLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKP 652
           S IFQEL+ KLNRMASIAADMFVGR+R+ATLLLMRLTETVI+WLSEDQSFWDDIEEGP+P
Sbjct: 603 SPIFQELFTKLNRMASIAADMFVGRERYATLLLMRLTETVIIWLSEDQSFWDDIEEGPRP 662

Query: 653 LGPLGLQQFYLDMKFVICFASQGHYLSRNLHEL 685
           LGPLGLQQFYLDMKFVICFASQG YLSRNL+ +
Sbjct: 663 LGPLGLQQFYLDMKFVICFASQGRYLSRNLNRV 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568053|ref|XP_002525003.1| conserved hypothetical protein [Ricinus communis] gi|223535711|gb|EEF37375.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224110014|ref|XP_002315387.1| predicted protein [Populus trichocarpa] gi|222864427|gb|EEF01558.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526324|ref|XP_003531768.1| PREDICTED: uncharacterized protein LOC100816882 [Glycine max] Back     alignment and taxonomy information
>gi|356522153|ref|XP_003529713.1| PREDICTED: uncharacterized protein LOC100820599 [Glycine max] Back     alignment and taxonomy information
>gi|224097468|ref|XP_002310947.1| predicted protein [Populus trichocarpa] gi|222850767|gb|EEE88314.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449447970|ref|XP_004141739.1| PREDICTED: uncharacterized protein LOC101213590 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515827|ref|XP_004164949.1| PREDICTED: uncharacterized LOC101213590 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297795751|ref|XP_002865760.1| hypothetical protein ARALYDRAFT_495042 [Arabidopsis lyrata subsp. lyrata] gi|297311595|gb|EFH42019.1| hypothetical protein ARALYDRAFT_495042 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240560|ref|NP_199794.1| exocyst complex component 84B [Arabidopsis thaliana] gi|8978259|dbj|BAA98150.1| unnamed protein product [Arabidopsis thaliana] gi|18700079|gb|AAL77652.1| AT5g49830/K21G20_4 [Arabidopsis thaliana] gi|20334792|gb|AAM16257.1| AT5g49830/K21G20_4 [Arabidopsis thaliana] gi|332008477|gb|AED95860.1| exocyst complex component 84B [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
TAIR|locus:2155441814 EXO84B "exocyst complex compon 0.872 0.772 0.760 2.5e-265
TAIR|locus:505006115754 AT1G10385 "AT1G10385" [Arabido 0.916 0.876 0.607 2.1e-210
TAIR|locus:2012768769 AT1G10180 "AT1G10180" [Arabido 0.862 0.808 0.348 1.7e-91
ZFIN|ZDB-GENE-070410-60684 exoc8 "exocyst complex compone 0.341 0.359 0.251 2.2e-18
MGI|MGI:2142527716 Exoc8 "exocyst complex compone 0.361 0.364 0.261 2.1e-16
UNIPROTKB|Q5ZJ43708 EXOC8 "Exocyst complex compone 0.337 0.343 0.250 7.7e-16
UNIPROTKB|F1NE80709 EXOC8 "Exocyst complex compone 0.337 0.342 0.250 7.7e-16
RGD|620245716 Exoc8 "exocyst complex compone 0.361 0.364 0.258 9.4e-16
UNIPROTKB|A4IF89725 EXOC8 "Exocyst complex compone 0.360 0.358 0.253 3.4e-15
UNIPROTKB|Q8IYI6725 EXOC8 "Exocyst complex compone 0.338 0.336 0.250 4.5e-15
TAIR|locus:2155441 EXO84B "exocyst complex component 84B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2425 (858.7 bits), Expect = 2.5e-265, Sum P(2) = 2.5e-265
 Identities = 483/635 (76%), Positives = 550/635 (86%)

Query:    51 EIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110
             +I+QLCSYLLDLKRASAEEMR+SVYANY AFIRTSKEISDLEGELSSIRNLLSTQATLIH
Sbjct:   110 DIKQLCSYLLDLKRASAEEMRRSVYANYPAFIRTSKEISDLEGELSSIRNLLSTQATLIH 169

Query:   111 GLAEGVHIDSLKGS-ESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALT 169
             GLA+GV+ID  K S ES A  N LLN E+   SDLEKW+ EFPD LD LLAERR+DEAL 
Sbjct:   170 GLADGVNIDDDKVSDESLA--NGLLNFEDNGLSDLEKWATEFPDHLDALLAERRVDEALA 227

Query:   170 ALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAIS 229
             A DEGE L ++A +  TL  ++L SL+  I +R+QKLADQLA+AACQPSTRG ELR+AI+
Sbjct:   228 AFDEGEILVSQANEKHTLSSSVLSSLQFAIAERKQKLADQLAKAACQPSTRGGELRSAIA 287

Query:   230 ALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDS 289
             ALK+LGDGPRAH++LL+AH+QRYQY+MQSLRPSSTSYGGAYTAALSQLVFSAI+QA+ DS
Sbjct:   288 ALKRLGDGPRAHTVLLDAHFQRYQYNMQSLRPSSTSYGGAYTAALSQLVFSAISQASSDS 347

Query:   290 LAIFGKETAYTSELVMWATRQTEAFAHLVKRHXXXXXXXXXXXXXXXECVQIALGHCSLL 349
             L IFGKE AY+SELV WAT+QTEAF+ LVKRH               EC QIALGHCSLL
Sbjct:   348 LGIFGKEPAYSSELVTWATKQTEAFSLLVKRHALASSAAAGGLRAAAECAQIALGHCSLL 407

Query:   350 EARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMAL 409
             EARGL+LCPVL+K F+P VEQAL+ANLKRIEE+TAAMAAADDWVLT PP G+R AS+ A 
Sbjct:   408 EARGLSLCPVLLKHFKPIVEQALEANLKRIEENTAAMAAADDWVLTSPPAGSRHAST-AF 466

Query:   410 QHRLTTSAHRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEE 469
             Q++LT+SAHRFNLMVQDFFEDVGPLLSMQLG K LEGLF+VFNSYV +L++ALPGS+EEE
Sbjct:   467 QNKLTSSAHRFNLMVQDFFEDVGPLLSMQLGSKALEGLFRVFNSYVDVLVRALPGSIEEE 526

Query:   470 -ANFEGSGNKIVRMAENEAQQIALLANASLLADELLPRAAMKVSPLNQANYKDDPRRRHS 528
               NFE S NKIV+MAE EA Q+ALLANASLLADELLPRAAMK+S L+Q   + D  RR  
Sbjct:   527 DPNFESSCNKIVQMAETEANQLALLANASLLADELLPRAAMKLS-LDQTGQRTDDLRRPL 585

Query:   529 DRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADMYLNMDGNVDEL 588
             DRQNRNPEQREWKRRL+ +VD+LKD FCRQHALDLIFTE+GDSHL+ADMY+N+D N +++
Sbjct:   586 DRQNRNPEQREWKRRLLSTVDKLKDAFCRQHALDLIFTEEGDSHLSADMYVNIDENGEDV 645

Query:   589 EWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEE 648
             ++FPSLIFQEL+AKLNRMAS+AADMFVGR+RFA  LLMRLTETVILWLS DQSFWDDIEE
Sbjct:   646 DFFPSLIFQELFAKLNRMASLAADMFVGRERFAISLLMRLTETVILWLSGDQSFWDDIEE 705

Query:   649 GPKPLGPLGLQQFYLDMKFVICFASQGHYLSRNLH 683
             GP+PLGPLGL+Q YLDMKFVICFASQG YLSRNLH
Sbjct:   706 GPRPLGPLGLRQLYLDMKFVICFASQGRYLSRNLH 740
GO:0005737 "cytoplasm" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:505006115 AT1G10385 "AT1G10385" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012768 AT1G10180 "AT1G10180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-60 exoc8 "exocyst complex component 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2142527 Exoc8 "exocyst complex component 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ43 EXOC8 "Exocyst complex component 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE80 EXOC8 "Exocyst complex component 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|620245 Exoc8 "exocyst complex component 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4IF89 EXOC8 "Exocyst complex component 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYI6 EXOC8 "Exocyst complex component 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025272001
SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (769 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
pfam0870087 pfam08700, Vps51, Vps51/Vps67 7e-16
>gnl|CDD|219977 pfam08700, Vps51, Vps51/Vps67 Back     alignment and domain information 
 Score = 72.7 bits (179), Expect = 7e-16
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 30  FKSDKFDADVYVKSKCS-LNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEI 88
             S  FDAD Y     S    +E+RQ+   L        EE+R+ VY NY   I+ +  I
Sbjct: 1   LSSPSFDADRYFSELLSKATLEELRQIEKKLRAEIEELQEELRQLVYENYRDLIKAADTI 60

Query: 89  SDLEGELSSIRNLLSTQATLIHGLAEG 115
           S ++ E+ S+   LS     +  L+  
Sbjct: 61  SKMKSEMESLSQKLSELKQALEKLSSK 87

This family includes a presumed domain found in a number of components of vesicular transport. The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of the eight-unit Conserved Oligomeric Golgi (COG) complex that participates in retrograde vesicular transport and is required to maintain normal Golgi structure and function. The subunits are located in two lobes and Cog1 serves to bind the two lobes together probably via the highly conserved N-terminal domain of approximately 85 residues. Length = 87

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 721
KOG2215673 consensus Exocyst complex subunit [Intracellular t 100.0
KOG2346636 consensus Uncharacterized conserved protein [Funct 99.95
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 99.83
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 99.66
KOG2069581 consensus Golgi transport complex subunit [Intrace 99.66
KOG2215673 consensus Exocyst complex subunit [Intracellular t 99.63
PF15469182 Sec5: Exocyst complex component Sec5 99.14
KOG2347934 consensus Sec5 subunit of exocyst complex [Intrace 98.88
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 98.76
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 98.53
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 98.49
PF10475291 DUF2450: Protein of unknown function N-terminal do 98.45
KOG2033 863 consensus Low density lipoprotein B-like protein [ 98.11
KOG2180793 consensus Late Golgi protein sorting complex, subu 97.68
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 97.21
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 97.05
KOG2307705 consensus Low density lipoprotein receptor [Intrac 96.34
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 96.18
KOG4182828 consensus Uncharacterized conserved protein [Funct 93.35
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 92.53
KOG3691 982 consensus Exocyst complex subunit Sec8 [Intracellu 91.89
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 85.77
PF03081371 Exo70: Exo70 exocyst complex subunit; InterPro: IP 85.23
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-63  Score=563.17  Aligned_cols=652  Identities=31%  Similarity=0.393  Sum_probs=573.8

Q ss_pred             hhhcccCCCCCChHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 004985           25 EGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLST  104 (721)
Q Consensus        25 ~~~~~f~~~~Fdpe~YV~~ll~~~e~~L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~EM~~L~~lLse  104 (721)
                      ++...|..+.|+|+.|+++.....+++|+++|+++..+++++++.|+++||.||.+||++||||++||.||++++|++.+
T Consensus         4 ~~~s~f~~~~~t~~~~i~~~~~~~e~dl~~~~~~~~~l~~as~e~~r~~~~~ny~~fI~~skEi~~le~el~~l~~~l~~   83 (673)
T KOG2215|consen    4 DDDSSFEDEKITPSSYIPSKSKKKESDLQQLCSELVALNKASAETLRQKVSMNYKAFIRTSKEISDLEMELYQLPKFLIE   83 (673)
T ss_pred             CccccCcccccCccccccchhhhhhhhHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhcCcccccccchHHHhHHhhhh
Confidence            45568999999999999999866779999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccccccccc-ccCcccccccccCCCCC-chhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHH--HH
Q 004985          105 QATLIHGLAEGVHIDSLKGSE-SFASKNDLLNLENKEPS-DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLA--AE  180 (721)
Q Consensus       105 q~~lI~~Ls~~~~l~sl~~~~-d~~~~~~~~~~e~~e~~-~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L--~~  180 (721)
                      |.++++++.+|+. .+..... ..+..++....++.... ...+|+.++++.++.+.+.+ .+.|...++-.+...  ..
T Consensus        84 Q~~~~~~l~~~~~-~d~~~~~s~~s~sn~~~~~~~~~l~~~~~~~~~~fl~~l~~~~~~~-~dg~l~~~D~~~~~~~q~~  161 (673)
T KOG2215|consen   84 QNNVIQSLLNGVL-QDLSEDESLESLSNTLLSLEDIHLGDVVKNLVKGFLKNLNTLLFES-VDGALEAFDFEKFLPSQKT  161 (673)
T ss_pred             ccchHHHhhcccc-ccccccccccccCCccccccCCchhHHHHHHHHHHHHhhhhhhhcc-chHHHhhcchhhhccchHH
Confidence            9999999999987 2222211 11110110111111122 46789999999999999999 888888776543211  11


Q ss_pred             hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhccccc
Q 004985          181 AKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLR  260 (721)
Q Consensus       181 ~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~  260 (721)
                      +..  ..++ .....+..++.|...|++.+.+...++++...++..++-.|+++|.++.++.+.++.+..++...+...+
T Consensus       162 ~~~--~~~~-~L~~~~~~~~~r~~~l~d~~~~~a~~~~~~~~e~~~a~~~li~l~~~~~~~~i~~~~~~~~~~~~~ea~R  238 (673)
T KOG2215|consen  162 LKT--DFSH-DLNSVKITHDKRKESLTDLSLRLAAQINIKDEESWEAQLNLIRLGYSRMYHNILAQRPTLWVNMLIQAKR  238 (673)
T ss_pred             HHH--HHHh-hhhhhhhhhchhhhHHHHHHHHHhhccccchHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHH
Confidence            111  1111 2566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCC--CcchhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHH
Q 004985          261 PSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE--TAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAEC  338 (721)
Q Consensus       261 ~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~--~~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ec  338 (721)
                      +....++..|-..++.+.|+.+..+..+-...|++.  ++|...-+.|..++++.|-.+|+.+.+.++..+..++..+.|
T Consensus       239 ~~l~~~~~~~qa~~~~~~~~~~S~A~~e~~~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~  318 (673)
T KOG2215|consen  239 LSLQTSPMERQATFPKLRFSAISWALTESLISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASAC  318 (673)
T ss_pred             HHHhhCccccccccchHHHhcCCcccCcccccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccc
Confidence            988888889999999999999999999999999998  889999999999999999999999998887788899999999


Q ss_pred             HHHHHHhhhhhhhcCCCchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCccccc-cccccccccchhH
Q 004985          339 VQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQA-SSMALQHRLTTSA  417 (721)
Q Consensus       339 v~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~-~~~~~~~~LT~S~  417 (721)
                      .+.+..+|..|+.+||-+...|..++.  ++++++.++++.......++.-++|...+++.+.+.+ ...+..+..|+++
T Consensus       319 ~~~~~~~~~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~~a~~~~~~~~~  396 (673)
T KOG2215|consen  319 LQLALTICKPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSRSTKRLLFKHSESLSAYRCRDTDEA  396 (673)
T ss_pred             hhhhhhhhhhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcccchHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999999999  8999999999999999999999999988887777765 2345678999999


Q ss_pred             HHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccCCccchhhccccHHHHHHHHhhHH
Q 004985          418 HRFNLMVQDFFEDVGPLLSMQLGGKMLEGLFQVFNSYVSMLIKALPGSMEEEANFEGSGNKIVRMAENEAQQIALLANAS  497 (721)
Q Consensus       418 ~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~yv~~l~~al~~~~~~~~~~e~~~~~~v~~a~t~~qq~~ll~Na~  497 (721)
                      ++|.-++++|.++++++.+.+.++..+..+.+.++.|++.+.+++|++.++.+-.+..+..+++.|++..+|++.|+++.
T Consensus       397 ~r~~~~~~d~~~~l~~~~~~e~~s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a~iv~~a~~~~~qL~~ig~~l  476 (673)
T KOG2215|consen  397 SRFLQVVQDFSEDLCDILKFEQGSKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVAEIVKRAEHTSEQLTLIGLDL  476 (673)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHHHHHHHhhhhHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999988887778888999999999999999999999


Q ss_pred             HHHHhHHHHHhhhhcCCccCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcccchhh
Q 004985          498 LLADELLPRAAMKVSPLNQANYKDDPRRRHSDRQNRNPEQREWKRRLVISVDRLKDTFCRQHALDLIFTEDGDSHLNADM  577 (721)
Q Consensus       498 ~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~fc~~~~~~~i~~~~~~~~~~~~~  577 (721)
                      ++.++.||+....-.+  ......+...+++++.++  |.++|++.+-.+.++|++-||+++.++++|.+.|.+++++++
T Consensus       477 t~~~~~Llr~~le~s~--~l~~~~E~~~~ald~r~~--~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d~  552 (673)
T KOG2215|consen  477 TIRDEALLRSKLESSQ--LLEGFKEGIADALDNRNR--EEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGDG  552 (673)
T ss_pred             HHHHHhhhhhhHHHhh--hhhcchhhHHHHHHhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccce
Confidence            9999999999876631  111123334577888777  899999999999999999999999999999999989999999


Q ss_pred             hhccCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCcCCCccc
Q 004985          578 YLNMDGNVDELEWFPSLIFQELYAKLNRMASIAADMFVGRQRFATLLLMRLTETVILWLSEDQSFWDDIEEGPKPLGPLG  657 (721)
Q Consensus       578 y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v~~~ls~~~~~w~~~e~~~~~~~~~g  657 (721)
                      |.+             ++||.+|.+.+.++.+++|++.||++..++||++|+||+++|+   |+||-.+++++.|.+|.|
T Consensus       553 ~~n-------------l~~q~v~~~~~~~~~le~d~~l~k~~l~~~lLe~L~e~~~~~l---Q~l~~~~~~~~dP~~~~~  616 (673)
T KOG2215|consen  553 WLN-------------LSSQLVVSKKQLMHLLEKDLPLGKLELAFQLLELLAETLSIAL---QSLWLKIDDEADPNIFAG  616 (673)
T ss_pred             EEe-------------hhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHH---HHHHhhhccccCcchHHH
Confidence            933             7799999999999999999999999999999999999999999   899999999999999999


Q ss_pred             hhhhhhhHHHHHHHHhhCCCCchhHHHHHHHHh-----------cCCccCCCchhHH
Q 004985          658 LQQFYLDMKFVICFASQGHYLSRNLHELSMRLY-----------LKPWQHLLLLAWI  703 (721)
Q Consensus       658 lqq~~ldm~f~~~~a~~g~~~s~~~~~~~~~~~-----------~dp~~~l~~d~wf  703 (721)
                      ++|||+||.|.++++.++||+.+..+.+.+-.+           ++|++.+|.++||
T Consensus       617 ~~q~i~~m~~~v~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~v~~~s~l~~~d~f  673 (673)
T KOG2215|consen  617 IRQLILDMELPVCIAAFDRIEGELGSKIMQLNTLRAEAKFDAMGVNPQSDLPVDDVF  673 (673)
T ss_pred             HHHHHHHhhhhhhHHHhhhhhHHhhhhhHHHHHHHHHhhcccccCCccccccccccC
Confidence            999999999999999999999998776554333           8999999999998

>KOG2346 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>KOG4182 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
2d2s_A235 Exocyst complex component EXO84; tethering complex 8e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Length = 235 Back     alignment and structure
 Score =  195 bits (496), Expect = 8e-58
 Identities = 45/241 (18%), Positives = 95/241 (39%), Gaps = 12/241 (4%)

Query: 132 DLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAM 191
            +    +     L K+  E  + +D+ LA  R + A+  L + E    +  +  + +  M
Sbjct: 3   HMSRDMSSTAQRL-KFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELM 61

Query: 192 LISLENTIID-RRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQ 250
           L++L +  I+ RR+ ++ +L+++    S     L++    + KLG   +A  L L     
Sbjct: 62  LLNLISLKIEQRREAISSKLSQSIL-SSNEIVHLKSGTENMIKLGLPEQALDLFLQNRSN 120

Query: 251 RYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETA-YTSELVMWATR 309
             Q  +  +          Y   L+ + F  I +   D   IF +  A  +S LV W + 
Sbjct: 121 FIQDLILQIGSVDNPT--NYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSD 178

Query: 310 QTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVE 369
           + +    L+ +  L           +   ++ +      L+A GL     L +  + + +
Sbjct: 179 EVDNHFKLIDKQLL------NDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSD 232

Query: 370 Q 370
           +
Sbjct: 233 K 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
2d2s_A235 Exocyst complex component EXO84; tethering complex 100.0
3swh_A341 MUNC13-1, protein UNC-13 homolog A; alpha helical, 87.6
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Back     alignment and structure
Probab=100.00  E-value=2.3e-45  Score=377.44  Aligned_cols=220  Identities=19%  Similarity=0.237  Sum_probs=198.8

Q ss_pred             CchhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 004985          142 SDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTK-TLDPAMLISLENTIIDRRQKLADQLAEAACQPSTR  220 (721)
Q Consensus       142 ~~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~-~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~  220 (721)
                      .+.++|+.++||+|||+||+|+||+||++++++++.+..++... +.+++....|+.|+++|++.|+++|.+++.+ +.+
T Consensus        12 ~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~   90 (235)
T 2d2s_A           12 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNE   90 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSS
T ss_pred             chhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            46789999999999999999999999999999999999887532 2345678899999999999999999999966 778


Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCC-CCcc
Q 004985          221 GAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGK-ETAY  299 (721)
Q Consensus       221 ~~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~-~~~~  299 (721)
                      +.+++++|++|+|||++++||++||++|+.+|++++|++..+|+  ++.||.++|.+||+.|++|+++|.++|++ +|.|
T Consensus        91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd--~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~  168 (235)
T 2d2s_A           91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDN--PTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKI  168 (235)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCS--HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            99999999999999999999999999999999999999977665  59999999999999999999999999999 7789


Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHH
Q 004985          300 TSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQ  370 (721)
Q Consensus       300 ~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~  370 (721)
                      +|+||.||++|++.|+.+|+||+++ .   +++.+  +||+++++||++|+++||||+|+|+++|+|++++
T Consensus       169 ~S~lV~Wa~~eve~f~~l~~rqv~~-~---~~l~~--ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~  233 (235)
T 2d2s_A          169 SSILVDWCSDEVDNHFKLIDKQLLN-D---EMLSP--GSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK  233 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC-------CCH--HHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccC-C---ccHHH--HHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence            9999999999999999999999987 3   66774  9999999999999999999999999999999876
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 721
d2d2sa1229 a.118.17.2 (A:525-753) Exocyst complex component E 7e-57
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  191 bits (486), Expect = 7e-57
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 146 KWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID-RRQ 204
           K+  E  + +D+ LA  R + A+  L + E    +  +  + +  ML++L +  I+ RR+
Sbjct: 10  KFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRRE 69

Query: 205 KLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSST 264
            ++ +L++ +   S     L++    + KLG   +A  L L       Q  +  +     
Sbjct: 70  AISSKLSQ-SILSSNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDN 128

Query: 265 SYGGAYTAALSQLVFSAIAQAACDSLAIF-GKETAYTSELVMWATRQTEAFAHLVKRHAL 323
                Y   L+ + F  I +   D   IF       +S LV W + + +    L+ +  L
Sbjct: 129 PT--NYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQLL 186

Query: 324 ASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQ 370
                      +   ++ +      L+A GL     L +  + + ++
Sbjct: 187 ------NDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 227

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 100.0
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-41  Score=344.66  Aligned_cols=219  Identities=19%  Similarity=0.231  Sum_probs=194.6

Q ss_pred             chhhhhhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Q 004985          143 DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLD-PAMLISLENTIIDRRQKLADQLAEAACQPSTRG  221 (721)
Q Consensus       143 ~~l~wl~elpdeLDv~IAer~feeAV~ll~k~~~~L~~~~~~~~~~-~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~  221 (721)
                      ++++|+.++||+||||||+|+||+|+++++++++++..+++.+... ......+..++++|++.|+++|.+.++. +.+.
T Consensus         7 ~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~~-~~~~   85 (229)
T d2d2sa1           7 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEI   85 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSH
T ss_pred             hhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCh
Confidence            5789999999999999999999999999999999999887654322 2346679999999999999999998864 5678


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcccccccccccccchHHhhHHHHHHHHHHHHHHHHHhcCCC-Ccch
Q 004985          222 AELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-TAYT  300 (721)
Q Consensus       222 ~elr~aV~lL~rLG~~~~A~~lfL~~rs~~L~~~ir~l~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~~~-~~~~  300 (721)
                      ++++++|++|+|||.+++||++||++|+.+|++.+++++++|+.  ..||.+++.+||+.|++|+.+|+++|+++ |.|+
T Consensus        86 ~~~~~~v~~L~rLg~~~~A~~lfL~~rs~~l~~~i~~~~~~~~~--~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~~s  163 (229)
T d2d2sa1          86 VHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNP--TNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKIS  163 (229)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhcCcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence            99999999999999999999999999999999999999999976  69999999999999999999999999765 5578


Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhcCcccccCccHHHHHHHHHHHHhhhhhhhcCCCchHHHHHhhhHHHHH
Q 004985          301 SELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQ  370 (721)
Q Consensus       301 S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~ls~~~ecv~ia~~~c~~L~~vGLdl~~lL~~ll~p~ve~  370 (721)
                      |.||.||.+|++.|+.+|+||++++      .+++++||+++++||+.|+++||||+|+|+++|++++++
T Consensus       164 S~lv~Wa~~ei~~f~~~l~r~l~~~------~~~~~~~i~~~~~~c~~L~~vGlDf~~lL~~ll~~~~~~  227 (229)
T d2d2sa1         164 SILVDWCSDEVDNHFKLIDKQLLND------EMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK  227 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccc------hhHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHhhHHh
Confidence            9999999999999999999999754      456789999999999999999999999999999999875