Citrus Sinensis ID: 005052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
MLAYLQKNSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVSSSNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGNNPGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDDNSGRPNQTQNPPADQKPTQDQLVRIDSECLSSIINNHDKNDANKNPNKALPSHHMQQNFGSFGAMELDFSSYNQHTVGGVSYANDSANHQNFNGGSGGVSLTLGLQQHGGSGVSLAFSPASQSSLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG
cHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHcHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHcccHHHHHHHHHHHHHHHHHHEEcccccccEEEEccEEEEEEEcccccccccccHHHHHcccccccHcHHccccccHHccccccccccccccccEEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccEEEccccccEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHccccccccccccccccccEEccccccccccccccccccHHHHHcc
mlaylqknSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFcysdvsssnptlhqTHMMNqiqgfegnheifnlTTGMEMIGFSknlqqhtsdnnSVMWKEFfnnkpagnnpgpsssktinesttsdhhfyqhdhqfnkqdfttgmsetsgenlivghdhsdvagawqennsrllvddsslrcvfpcegnerpsqglslslsssnpssiglqsfelrqtnhndhdhqqddmrfissstsregffgkpaagiQQQQQMMQdgflgkpaippnihhqtghqfqlrnskylAPAQEILKEFCslgtkqndatklksnkakqqwddenagsssrkqslCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKamgekdpvapgtsrgetprlkIIDQTLRQQRAFQQMSmmeshpwrpqrglperSVSVLRAWLFEhflhpypsdvdkhILARQtglsrsqvsNWFINARVRLWKPMVEEMYLEETKeqdnnmassdgatdlddnsgrpnqtqnppadqkptqdqlvRIDSECLSSIInnhdkndanknpnkalpshhmqqnfgsfgameldfssynqhtvggvsyandsanhqnfnggsggvSLTLglqqhggsgvslafspasqsslfyprdhieDCQQVQYSLldgegqnlpyrnlMGAQLLHDLAG
MLAYLQKNSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVSSSNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNkpagnnpgpSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSlgtkqndatklksnkakqqwddenagsssrkqslcsLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQAtkkamgekdpvapgtsrgetprlkIIDQTLRQQRAFQQMSMMeshpwrpqrglPERSVSVLRAWLFEHFLHPYPSDVDKHILARQtglsrsqvsnwfinARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDDNSGRPNQtqnppadqkptqdQLVRIDSECLSSIINNHDKNDANKNPNKALPSHHMQQNFGSFGAMELDFSSYNQHTVGGVSYANDSANHQNFNGGSGGVSLTLGLQQHGGSGVSLAFSPASQSSLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG
MLAYLQKNSEERfffffffflfffcfvfNITDKIHSLLLLRNWWFCYSDVSSSNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGNNPGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERpsqglslslsssnpssiglqsFELRQTnhndhdhqqddMRFISSSTSREGFFGKPAAGIqqqqqmmqDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDDNSGRPNQTQNPPADQKPTQDQLVRIDSECLSSIInnhdkndanknpnkaLPSHHMQQNFGSFGAMELDFSSYNQHTVGGVSYANDSANHQNFNggsggvsltlglQQHGGSGVSLAFSPASQSSLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG
**********ERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVSS***TLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKN**********VMWKEF***************************************************LIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPC*****************************************************************************************GHQFQLRNSKYLAPAQEILKEFCSL***********************************LEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQ**********************************************************VSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYL************************************************************************************AMELDFSSYNQHTVGGVSY*****************SLTLGL******************SLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQL******
*******NSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVS**********MMNQIQGFEGNHEIFNLTTGME**********************************************************************************************************************************************************************************************************LRNSKYLAPAQEILKEFCSLG******************************************RKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEA***********ALASKAMSRHFRCL*******************************************************************VSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRL*************************************************************************************************************************************LGL*****************************************************QLLHDLAG
MLAYLQKNSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVSSSNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGN***********ESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGN******************IGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQN*************************QSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI*******************GETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDD********************QLVRIDSECLSSIINNHDKNDANKNPNKALPSHHMQQNFGSFGAMELDFSSYNQHTVGGVSYANDSANHQNFNGGSGGVSLTLGLQQHGGSGVSLAFSPASQSSLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG
MLAYLQKNSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVSSSNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKP***************STTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFEL*********************************************************HQTGHQFQLRNSKYLAPAQEILKEFCSLG**********************************LEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMG**************PRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQ***************************************************************************SFGAMELDFSSYNQHTVGGVSYANDSANHQNFNGGSGGVSLTLGLQQHGGSGVSLAFSPASQSSLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLAYLQKNSEERFFFFFFFFLFFFCFVFNITDKIHSLLLLRNWWFCYSDVSSSNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGNNPGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDDNSGRPNQTQNPPADQKPTQDQLVRIDSECLSSIINNHDKNDANKNPNKALPSHHMQQNFGSFGAMELDFSSYNQHTVGGVSYANDSANHQNFNGGSGGVSLTLGLQQHGGSGVSLAFSPASQSSLFYPRDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query716 2.2.26 [Sep-21-2011]
Q38897611 Homeobox protein BEL1 hom yes no 0.731 0.857 0.474 1e-122
Q9SW80739 BEL1-like homeodomain pro no no 0.351 0.341 0.555 3e-84
Q94KL5627 BEL1-like homeodomain pro no no 0.511 0.583 0.457 1e-83
O65685532 BEL1-like homeodomain pro no no 0.350 0.471 0.552 2e-72
Q9SIW1482 BEL1-like homeodomain pro no no 0.358 0.533 0.525 2e-71
Q9SJ56680 BEL1-like homeodomain pro no no 0.509 0.536 0.437 3e-69
Q9FXG8538 BEL1-like homeodomain pro no no 0.332 0.442 0.515 3e-68
Q9FWS9524 BEL1-like homeodomain pro no no 0.356 0.486 0.5 1e-67
Q8S897431 BEL1-like homeodomain pro no no 0.423 0.703 0.360 4e-53
Q1PFD1290 BEL1-like homeodomain pro no no 0.337 0.834 0.415 6e-52
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 303/638 (47%), Positives = 379/638 (59%), Gaps = 114/638 (17%)

Query: 130 SDHHFYQHDHQFNKQDFTTGM----SETSGENLIVGHDHS----DVAGAWQENNSRLLVD 181
           +DHH Y  +HQ    +   GM    S+     +  G DH       +G   +N  +LL D
Sbjct: 36  TDHHHY--NHQIFGSNSNMGMMIDFSKQQQIRMTSGSDHHHHHHQTSGGTDQN--QLLED 91

Query: 182 DSS-LRCV-----FPCEGNE-----RPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDH 230
            SS +R       FP E N+     RPSQGLSLSLSSSNP+SI LQSFELR         
Sbjct: 92  SSSAMRLCNVNNDFPSEVNDERPPQRPSQGLSLSLSSSNPTSISLQSFELR--------- 142

Query: 231 QQDDMRFISSSTSREGFFGKPAAGIQQ----QQQMMQDGFLGKPAIPPNIHHQTGHQFQL 286
                        ++G+ G  +   Q     Q  MM      +     N  H   HQFQ+
Sbjct: 143 --------PQQQQQQGYSGNKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQI 194

Query: 287 RNSKYLAPAQEILKEFCSLGTKQND-------ATKLKSNKAKQQWD----------DENA 329
            +SKYL+PAQE+L EFCSLG K++D         K +  K +++WD          D++A
Sbjct: 195 GSSKYLSPAQELLSEFCSLGVKESDEEVMMMKHKKKQKGKQQEEWDTSHHSNNDQHDQSA 254

Query: 330 GSSSRKQ--SLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAA 387
            +SS+K    L SLEFMELQKRK KLLSMLEE+ RRY HY +QM+   ++FEA  G G A
Sbjct: 255 TTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGA 314

Query: 388 RVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDP---VAPGTSRGETPRLKIIDQT 444
            +Y+ALAS+AMSRHFRCL+DG+VGQIQAT +A+GE++         +RGETPRL+++DQ 
Sbjct: 315 EIYTALASRAMSRHFRCLKDGLVGQIQATSQALGEREEDNRAVSIAARGETPRLRLLDQA 374

Query: 445 LRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLS 504
           LRQQ++++QM+++++HPWRPQRGLPER+V+ LRAWLFEHFLHPYPSDVDKHILARQTGLS
Sbjct: 375 LRQQKSYRQMTLVDAHPWRPQRGLPERAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLS 434

Query: 505 RSQVSNWFINARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDDNSGRPNQTQNP-PA 563
           RSQVSNWFINARVRLWKPM+EEMY EET+ +   +                    NP   
Sbjct: 435 RSQVSNWFINARVRLWKPMIEEMYCEETRSEQMEIT-------------------NPMMI 475

Query: 564 DQKPTQDQLVRIDSECLSSIINNHDKNDANKNPNKALPSHHMQQNFGSFGAMELDFSSYN 623
           D KP  DQL+R++ E LSSI+ N      +        S H   + GS      DFS Y 
Sbjct: 476 DTKPDPDQLIRVEPESLSSIVTNPTSKSGHN-------STHGTMSLGS----TFDFSLYG 524

Query: 624 QHTVGGVSYANDSANHQNFNGGSGGVSLTLGLQQH-GGSGVSLAFSP--ASQSSLFYPRD 680
                 V+YA +        G  G VSLTLGLQ++ G  GVSLA SP  A    LFY RD
Sbjct: 525 NQ---AVTYAGE-------GGPRGDVSLTLGLQRNDGNGGVSLALSPVTAQGGQLFYGRD 574

Query: 681 HIEDCQQVQYS---LLDGEGQNLPYRNLMGAQLLHDLA 715
           HIE+   VQYS   L D + QNLPYRNLMGAQLLHD+ 
Sbjct: 575 HIEEG-PVQYSASMLDDDQVQNLPYRNLMGAQLLHDIV 611
Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description
>sp|Q1PFD1|BLH11_ARATH BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
255537553698 bel1 homeotic protein, putative [Ricinus 0.909 0.932 0.765 0.0
359474075672 PREDICTED: homeobox protein BEL1 homolog 0.895 0.953 0.751 0.0
224058451535 predicted protein [Populus trichocarpa] 0.731 0.979 0.783 0.0
356539654642 PREDICTED: homeobox protein BEL1 homolog 0.860 0.959 0.668 0.0
356497253646 PREDICTED: homeobox protein BEL1 homolog 0.860 0.953 0.660 0.0
356528643646 PREDICTED: homeobox protein BEL1 homolog 0.857 0.950 0.661 0.0
356513359635 PREDICTED: homeobox protein BEL1 homolog 0.847 0.955 0.639 0.0
297742224445 unnamed protein product [Vitis vinifera] 0.618 0.995 0.711 0.0
365222892624 Hop-interacting protein THI035 [Solanum 0.805 0.924 0.559 1e-176
187940722534 BEL14 protein [Solanum etuberosum] 0.708 0.949 0.587 1e-164
>gi|255537553|ref|XP_002509843.1| bel1 homeotic protein, putative [Ricinus communis] gi|223549742|gb|EEF51230.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/698 (76%), Positives = 578/698 (82%), Gaps = 47/698 (6%)

Query: 45  FCYSDVSS-SNPTLHQTHMMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQ------HTSD 97
           FCYSDVSS SNPT+ QTH+ NQIQGFE N EIFNLTTGMEMIGFS+NLQQ      H S+
Sbjct: 22  FCYSDVSSASNPTI-QTHLGNQIQGFESNQEIFNLTTGMEMIGFSRNLQQQQQQQSHDSN 80

Query: 98  NNSV-MWKEFFNNKPAGNN----PGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSE 152
             +  MWK F N   AGNN     GPSSSKTINEST+    FYQH+  FNKQ+FTTG+SE
Sbjct: 81  TTAAAMWKGFLNK--AGNNNNSCAGPSSSKTINESTSD---FYQHE--FNKQEFTTGISE 133

Query: 153 TSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSS 212
           TS ENLIVG   S   G WQ +  RLLVDDS+LRCVFPCEGNERPSQGLSLSLSS+NPSS
Sbjct: 134 TSSENLIVGPTDSSSPG-WQVH--RLLVDDSNLRCVFPCEGNERPSQGLSLSLSSANPSS 190

Query: 213 IGLQSFELRQT-NHNDHDHQQD-DMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKP 270
           IGLQSFELR T NH+DH+ QQ+ +MRF++SS SR+GFFGK  A  Q QQQMMQDGF+ K 
Sbjct: 191 IGLQSFELRHTSNHHDHNQQQEQEMRFLNSS-SRDGFFGKSPANTQHQQQMMQDGFMTKA 249

Query: 271 AIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAG 330
           A    +HHQ   QFQLRNSKYL PAQE+L EFCSLGTKQ+D  + KS+K KQ W++EN  
Sbjct: 250 AT---LHHQG--QFQLRNSKYLGPAQELLNEFCSLGTKQSDQLRQKSSKPKQ-WENENGS 303

Query: 331 SSS---RKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAA 387
           SSS   RKQSLCSLEFMELQKRKTKLLSMLEEV+RRYRHYCDQMKAVVSSFEAVAG GAA
Sbjct: 304 SSSSASRKQSLCSLEFMELQKRKTKLLSMLEEVERRYRHYCDQMKAVVSSFEAVAGAGAA 363

Query: 388 RVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQ 447
            VYSALASKAMSRHFRCLRDGIV QI ATKKAMGEKDPVAPGT++GETPRL+I+DQTLRQ
Sbjct: 364 MVYSALASKAMSRHFRCLRDGIVAQIHATKKAMGEKDPVAPGTTKGETPRLRILDQTLRQ 423

Query: 448 QRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQ 507
           QRA QQM+MMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQ
Sbjct: 424 QRAIQQMTMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQ 483

Query: 508 VSNWFINARVRLWKPMVEEMYLEETKEQDNNMASSDGATDLDDNSGRPNQTQNPPADQKP 567
           VSNWFINARVRLWKPMVEEMYLEETKEQDNNMAS DG TDL+DN+GRP+Q  +   DQKP
Sbjct: 484 VSNWFINARVRLWKPMVEEMYLEETKEQDNNMASPDGITDLEDNNGRPSQNLS-STDQKP 542

Query: 568 TQDQLVRIDSECLSSIINNHDKNDANKNPN-------KALPSHHMQQNFGSFGAMELDFS 620
           T DQL+R+DSECLSSII+N DKND +K                  Q NFG+FGA+ELD S
Sbjct: 543 TPDQLIRVDSECLSSIISNPDKNDISKTTKTFQNHHHLHTQQQQQQHNFGAFGAVELDIS 602

Query: 621 SYNQHTVGGVSYAND-SANHQNFNGGSGGVSLTLGLQQHGGS-GVSLAFSPASQSSLFYP 678
           SYN H  GGVSYAND   NHQNFNG  GGVSLTLGLQQHGGS GVSLAFSPASQSSLFY 
Sbjct: 603 SYNHHAAGGVSYANDHGGNHQNFNG--GGVSLTLGLQQHGGSGGVSLAFSPASQSSLFYS 660

Query: 679 RDHIEDCQQVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 716
           RDHI+DCQ VQYSLLDGEGQNLPYRNLMGAQLLHDLAG
Sbjct: 661 RDHIDDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 698

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474075|ref|XP_002279230.2| PREDICTED: homeobox protein BEL1 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|224058451|ref|XP_002299516.1| predicted protein [Populus trichocarpa] gi|222846774|gb|EEE84321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356539654|ref|XP_003538310.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356497253|ref|XP_003517476.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356528643|ref|XP_003532909.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356513359|ref|XP_003525381.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|297742224|emb|CBI34373.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|365222892|gb|AEW69798.1| Hop-interacting protein THI035 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|187940722|gb|ACD39462.1| BEL14 protein [Solanum etuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
TAIR|locus:2177856611 BEL1 "AT5G41410" [Arabidopsis 0.349 0.409 0.588 2.1e-105
TAIR|locus:2049035627 BLH4 "BEL1-like homeodomain 4" 0.420 0.480 0.514 8.2e-85
TAIR|locus:2115000739 BLH2 "AT4G36870" [Arabidopsis 0.384 0.372 0.552 1.5e-83
TAIR|locus:2039250680 BLH1 "AT2G35940" [Arabidopsis 0.325 0.342 0.588 1.6e-76
TAIR|locus:2139614532 BLH6 "AT4G34610" [Arabidopsis 0.350 0.471 0.552 6.5e-67
TAIR|locus:2013154538 BEL10 "AT1G19700" [Arabidopsis 0.389 0.518 0.470 7.7e-66
TAIR|locus:2018398524 BLH3 "AT1G75410" [Arabidopsis 0.375 0.513 0.483 2e-65
TAIR|locus:2042609482 BLH7 "AT2G16400" [Arabidopsis 0.358 0.533 0.525 2.5e-65
TAIR|locus:2185183575 RPL "AT5G02030" [Arabidopsis t 0.389 0.485 0.433 1.1e-58
TAIR|locus:2018457290 BLH11 "BEL1-like homeodomain 1 0.353 0.872 0.406 3.2e-49
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 819 (293.4 bits), Expect = 2.1e-105, Sum P(3) = 2.1e-105
 Identities = 169/287 (58%), Positives = 209/287 (72%)

Query:   316 KSNKAKQQ--WD----------DENAGSSSRKQ--SLCSLEFMELQKRKTKLLSMLEEVD 361
             K  K KQQ  WD          D++A +SS+K    L SLEFMELQKRK KLLSMLEE+ 
Sbjct:   229 KKQKGKQQEEWDTSHHSNNDQHDQSATTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELK 288

Query:   362 RRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMG 421
             RRY HY +QM+   ++FEA  G G A +Y+ALAS+AMSRHFRCL+DG+VGQIQAT +A+G
Sbjct:   289 RRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQALG 348

Query:   422 EKDPVAPGTS---RGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRA 478
             E++      S   RGETPRL+++DQ LRQQ++++QM+++++HPWRPQRGLPER+V+ LRA
Sbjct:   349 EREEDNRAVSIAARGETPRLRLLDQALRQQKSYRQMTLVDAHPWRPQRGLPERAVTTLRA 408

Query:   479 WLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNN 538
             WLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM+EEMY EET+ +   
Sbjct:   409 WLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEEMYCEETRSEQME 468

Query:   539 MASSDGATDLDDNSGRPNQTQNPPA-DQKPTQDQLVRIDSECLSSII 584
             +                    NP   D KP  DQL+R++ E LSSI+
Sbjct:   469 IT-------------------NPMMIDTKPDPDQLIRVEPESLSSIV 496
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0048481 "ovule development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0048513 "organ development" evidence=RCA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018457 BLH11 "BEL1-like homeodomain 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
pfam07526139 pfam07526, POX, Associated with HOX 5e-56
smart00574140 smart00574, POX, domain associated with HOX domain 1e-48
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 8e-20
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 5e-11
smart0038957 smart00389, HOX, Homeodomain 1e-08
pfam0004657 pfam00046, Homeobox, Homeobox domain 4e-04
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  187 bits (476), Expect = 5e-56
 Identities = 76/140 (54%), Positives = 89/140 (63%), Gaps = 13/140 (9%)

Query: 284 FQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENA------------GS 331
             LR SKYL PAQE+L+EFCS+G K        SN A+   +   A             S
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVG-KNKALDDDSSNGAENGANSSGASSGDGGGSSAGDSS 59

Query: 332 SSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYS 391
            S    L + E  ELQ++K KLLSMLEEVDRRYR Y DQM+ V+SSFEAVAG GAA+ Y+
Sbjct: 60  DSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAKPYT 119

Query: 392 ALASKAMSRHFRCLRDGIVG 411
           ALA +AMSRHFRCLRD I G
Sbjct: 120 ALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 716
smart00574140 POX domain associated with HOX domains. 100.0
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 99.97
KOG0774334 consensus Transcription factor PBX and related HOX 99.61
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.58
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.36
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.32
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.32
KOG0775304 consensus Transcription factor SIX and related HOX 99.25
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 98.88
KOG0487308 consensus Transcription factor Abd-B, contains HOX 98.85
KOG0843197 consensus Transcription factor EMX1 and related HO 98.68
KOG0493342 consensus Transcription factor Engrailed, contains 98.65
KOG0489261 consensus Transcription factor zerknullt and relat 98.62
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.6
KOG0488309 consensus Transcription factor BarH and related HO 98.58
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.56
KOG0850245 consensus Transcription factor DLX and related pro 98.56
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 98.51
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 98.42
COG5576156 Homeodomain-containing transcription factor [Trans 98.36
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.35
KOG2251228 consensus Homeobox transcription factor [Transcrip 98.26
KOG0848317 consensus Transcription factor Caudal, contains HO 98.25
KOG0492246 consensus Transcription factor MSH, contains HOX d 98.24
KOG0486351 consensus Transcription factor PTX1, contains HOX 98.19
KOG0491194 consensus Transcription factor BSH, contains HOX d 98.12
KOG0494332 consensus Transcription factor CHX10 and related H 98.1
KOG0847288 consensus Transcription factor, contains HOX domai 98.05
KOG4577383 consensus Transcription factor LIM3, contains LIM 97.94
KOG2252558 consensus CCAAT displacement protein and related h 97.87
KOG0844408 consensus Transcription factor EVX1, contains HOX 97.5
KOG0849354 consensus Transcription factor PRD and related pro 97.42
KOG0773342 consensus Transcription factor MEIS1 and related H 97.36
KOG0490235 consensus Transcription factor, contains HOX domai 97.32
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 97.1
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 95.58
KOG0490235 consensus Transcription factor, contains HOX domai 94.79
KOG1146 1406 consensus Homeobox protein [General function predi 87.66
>smart00574 POX domain associated with HOX domains Back     alignment and domain information 
Probab=100.00  E-value=6.4e-38  Score=294.70  Aligned_cols=130  Identities=53%  Similarity=0.811  Sum_probs=106.1

Q ss_pred             ccceeccCCcchhHHHHHHHHHHccCCccCcchhhhh---h--h--hcccCCCCCCC-CCCcccccChhhHHHHHHHHHH
Q 005052          281 GHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKS---N--K--AKQQWDDENAG-SSSRKQSLCSLEFMELQKRKTK  352 (716)
Q Consensus       281 Gya~~l~~SRyLkPAQeLL~E~c~v~~~~~~~~~~~s---~--~--~~~~~~~~~~~-~~s~~peLssle~~elQ~kK~k  352 (716)
                      ||+++|++||||+||||||+|||+|+...........   .  .  .....+...+. ..+..+++++++++|+|+||+|
T Consensus         2 g~~~~l~~SkyLk~aQeLLdEf~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ls~~~r~e~q~kk~k   81 (140)
T smart00574        2 GGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPVSTSSNEGGGENLSGGSSSSEVPPLSTAERQELQRKKAK   81 (140)
T ss_pred             chhhhccCccccccHHHHHHHHhcccHHhhcccccccccccccccccCCCcCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Confidence            8899999999999999999999999855433221110   0  0  00111111111 2234589999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCccCchhhhHHHhhhcccchhhHH
Q 005052          353 LLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIV  410 (716)
Q Consensus       353 LL~mLEEVd~rY~qY~~qmq~V~sSFe~vaG~gaA~~Yt~lAl~amSrhfr~LrdaI~  410 (716)
                      ||.||||||+||+|||+|||+|+++||+|+|.|+|.|||+||+++||||||||||+|+
T Consensus        82 Ll~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~SrhFr~LrdaI~  139 (140)
T smart00574       82 LLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIA  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999996

>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 5e-12
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 6e-11
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 6e-11
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 2e-10
1du6_A64 Solution Structure Of The Truncated Pbx Homeodomain 6e-07
1lfu_P82 Nmr Solution Stucture Of The Extended Pbx Homeodoma 6e-07
1b8i_B63 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 7e-07
1b72_B87 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 1e-06
1puf_B73 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 1e-06
4egc_A559 Crystal Structure Of Mbp-fused Human Six1 Bound To 2e-05
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 468 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 526
            P+ + ++ RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINAR R+ +P +++
Sbjct: 5   FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPXIDQ 63
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain Length = 64 Back     alignment and structure
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Back     alignment and structure
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 63 Back     alignment and structure
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Back     alignment and structure
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 73 Back     alignment and structure
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human Eya2 Eya Domain Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 6e-37
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 1e-36
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 7e-36
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 2e-33
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 2e-32
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 4e-32
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 2e-30
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 7e-27
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 1e-26
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 3e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 4e-07
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 5e-07
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 9e-07
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 2e-06
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 1e-05
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 4e-05
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 6e-05
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 1e-04
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 1e-04
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
 Score =  132 bits (333), Expect = 6e-37
 Identities = 33/86 (38%), Positives = 48/86 (55%)

Query: 457 MESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 516
           M  H       LP+ SV +LR WL+EH  + YPS+ +K +L++QT LS  QV NWFINAR
Sbjct: 1   MGHHHHHHSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINAR 60

Query: 517 VRLWKPMVEEMYLEETKEQDNNMASS 542
            RL   M+ +   +  +   +   + 
Sbjct: 61  RRLLPDMLRKDGKDPNQFTISRRGAK 86
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.74
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.72
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.68
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.67
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.65
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.63
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.62
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.6
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.59
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.58
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.47
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.45
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.44
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.4
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.4
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.4
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.39
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.39
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.39
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.39
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.38
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.38
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.37
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.37
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.37
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.37
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.37
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.36
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.36
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.36
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.35
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.35
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.34
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.33
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.33
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.33
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.32
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.32
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.32
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.31
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.31
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.31
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.3
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.3
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.29
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.28
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.28
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.28
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.27
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.27
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.27
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.27
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.26
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.26
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.25
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.25
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.24
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.24
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.23
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.21
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.18
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.18
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.14
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.13
2e19_A64 Transcription factor 8; homeobox domain, structura 99.13
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.12
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.12
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.09
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.07
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 99.04
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 99.04
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.01
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 98.95
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.87
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.82
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 98.77
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.67
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 95.6
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 90.57
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
Probab=99.74  E-value=9.9e-19  Score=153.81  Aligned_cols=63  Identities=49%  Similarity=0.800  Sum_probs=58.8

Q ss_pred             CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhchhhHHHHH
Q 005052          466 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY  528 (716)
Q Consensus       466 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlkKpmiee~~  528 (716)
                      .-||++++++|++||.+|..||||++++|.+||++||||++||+|||+|+|+|.|++++++..
T Consensus        10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~~   72 (89)
T 2lk2_A           10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDG   72 (89)
T ss_dssp             CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhcC
Confidence            349999999999999999999999999999999999999999999999999999998875543
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 716
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 3e-18
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 5e-16
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 7e-15
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 6e-07
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 3e-06
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 5e-06
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 1e-05
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 2e-05
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 2e-04
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 2e-04
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 3e-04
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 4e-04
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 4e-04
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 4e-04
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 4e-04
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 9e-04
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 0.001
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 0.002
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 0.002
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 0.003
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 0.003
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 0.004
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 0.004
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 29/58 (50%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 463 RPQRG-LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRL 519
           + +RG LP+ + +V+R+WLF+H  HPYP++ +K  +A QT L+  QV+NWFINAR R+
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 60
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.73
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.68
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.49
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.46
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.44
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.44
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.43
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.43
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.42
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.42
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.41
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.41
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.41
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.4
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.4
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.4
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.37
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.37
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.37
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.36
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.35
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.35
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.35
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.32
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.29
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.29
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.27
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.26
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.22
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.22
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.1
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-18  Score=140.74  Aligned_cols=59  Identities=46%  Similarity=0.838  Sum_probs=55.5

Q ss_pred             CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhchhhhhhhc
Q 005052          462 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW  520 (716)
Q Consensus       462 kRkrR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LAkqTGLS~~QVsNWFiNaRrRlk  520 (716)
                      +|+|..||++++.+|+.||.+|..||||+.+||.+||++|||+.+||.|||+|+|+|+.
T Consensus         3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l   61 (62)
T d1x2na1           3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL   61 (62)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence            45556699999999999999999999999999999999999999999999999999975
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure