Citrus Sinensis ID: 005065
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LNC4 | 766 | Transcription factor GTE4 | yes | no | 0.728 | 0.680 | 0.557 | 1e-149 | |
| Q9S7T1 | 461 | Transcription factor GTE3 | no | no | 0.406 | 0.631 | 0.492 | 4e-74 | |
| Q8H1D7 | 487 | Transcription factor GTE5 | no | no | 0.412 | 0.605 | 0.440 | 1e-65 | |
| Q9LK27 | 813 | Transcription factor GTE8 | no | no | 0.300 | 0.264 | 0.397 | 6e-41 | |
| Q93YS6 | 688 | Transcription factor GTE9 | no | no | 0.413 | 0.430 | 0.336 | 3e-40 | |
| Q9FGW9 | 1061 | Transcription factor GTE1 | no | no | 0.351 | 0.236 | 0.323 | 2e-34 | |
| Q7Y214 | 590 | Transcription factor GTE7 | no | no | 0.272 | 0.330 | 0.366 | 2e-34 | |
| Q93ZB7 | 620 | Transcription factor GTE1 | no | no | 0.307 | 0.354 | 0.356 | 3e-34 | |
| Q84XV2 | 386 | Transcription factor GTE1 | no | no | 0.345 | 0.639 | 0.323 | 7e-32 | |
| Q9LXA7 | 581 | Transcription factor GTE2 | no | no | 0.138 | 0.170 | 0.62 | 3e-31 |
| >sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 309/554 (55%), Positives = 391/554 (70%), Gaps = 33/554 (5%)
Query: 147 EQPTQTLTVADTN---LDQQP--VVSHLDAASDDSSSLNRQ--------------QGGVV 187
E P+QTL++ D + +D+ P V S D D+ +L ++ Q
Sbjct: 185 EAPSQTLSLEDGDTLVVDKNPIEVSSEEDVHVIDADNLIKEAHPENFVERDTTDAQQPAG 244
Query: 188 VAATTREAPSENGVVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247
+ + + A + + + DGR++I + S+TK++ EIRKKLE +L+ VR +VK+IE K
Sbjct: 245 LTSDSAHATAAGSMPMEEDADGRIRIHVASTTKQQKEEIRKKLEDQLNVVRGMVKKIEDK 304
Query: 248 EVQISGGVSNSGVLPVSDVVDNGIKRGHSEVASVGVPVTRVGITRPSRPLNQLSISTVEN 307
E +I G ++S VL ++ ++NG R S AS G+P + R RP+NQLSIS +EN
Sbjct: 305 EGEI-GAYNDSRVL-INTGINNGGGRILSGFASAGLPRE---VIRAPRPVNQLSISVLEN 359
Query: 308 SLGLSENVEKEKRTPKANQFYRNSEFLLAKDKFPPAESNKKSKLNGKKQAGNELAHGFGT 367
+ G++E+VEKEKRTPKANQFYRNSEFLL DK PPAESNKKSK + KKQ G+ + HGFG
Sbjct: 360 TQGVNEHVEKEKRTPKANQFYRNSEFLLG-DKLPPAESNKKSKSSSKKQGGD-VGHGFGA 417
Query: 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWY 427
G+K+FK+CSALLE+LMKHKHGWVFNAPVDVK LGL DY+TII HPMDLGT+K+ L KN Y
Sbjct: 418 GTKVFKNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLY 477
Query: 428 KSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREMRIGADYE 487
KSP+EFAEDVRLTFHNAMTYNP+GQDVH+MA LL+IFE++W VIE++YNREMR YE
Sbjct: 478 KSPREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMRFVTGYE 537
Query: 488 MGFHTPT--SRKAPPL-PPPLDMRRILDRSE--SITHPMDSRLKPISTTPSSRTPAPKKP 542
M TPT SR P + PPP+++R +DR++ + P S TPS RTPA KKP
Sbjct: 538 MNLPTPTMRSRLGPTMPPPPINVRNTIDRADWSNRQPTTTPGRTPTSATPSGRTPALKKP 597
Query: 543 KAKDPHKRDMTYDEKQKLSTNLQSLPSEKLDNIVQIIKKRNSSLFQHDDEIEVDIDSVDA 602
KA +P+KRDMTY+EKQKLS +LQ+LP +KLD IVQI+ KRN+++ D+EIEVDIDSVD
Sbjct: 598 KANEPNKRDMTYEEKQKLSGHLQNLPPDKLDAIVQIVNKRNTAVKLRDEEIEVDIDSVDP 657
Query: 603 ETLWELDRFVTNYKKSLSKNKRKAELANQARAVAQQNVQQQ-TPAPVVTEVRKE-IRTDD 660
ETLWELDRFVTNYKK LSK KRKAELA QARA A++N QQQ PAP E +E T
Sbjct: 658 ETLWELDRFVTNYKKGLSKKKRKAELAIQARAEAERNSQQQMAPAPAAHEFSREGGNTAK 717
Query: 661 RIGSTSSPVQVEKQ 674
+ T P QVEKQ
Sbjct: 718 KTLPTPLPSQVEKQ 731
|
Involved in the activation and maintenance of cell division in the meristems and by this controls cell numbers in differentiated organs. Its action in cell cycle regulation may be directed through the RB-E2F pathway. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q84XV2|GTE1_ARATH Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9LXA7|GTE2_ARATH Transcription factor GTE2 OS=Arabidopsis thaliana GN=GTE2 PE=2 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| 356542179 | 901 | PREDICTED: uncharacterized protein LOC10 | 0.848 | 0.673 | 0.588 | 0.0 | |
| 356546972 | 640 | PREDICTED: transcription factor GTE4-lik | 0.841 | 0.940 | 0.586 | 0.0 | |
| 225446551 | 654 | PREDICTED: transcription factor GTE4-lik | 0.727 | 0.795 | 0.618 | 0.0 | |
| 356545057 | 874 | PREDICTED: transcription factor GTE4-lik | 0.717 | 0.586 | 0.668 | 0.0 | |
| 147820894 | 660 | hypothetical protein VITISV_035453 [Viti | 0.725 | 0.786 | 0.619 | 0.0 | |
| 356515098 | 971 | PREDICTED: uncharacterized protein LOC10 | 0.721 | 0.531 | 0.659 | 0.0 | |
| 449526541 | 629 | PREDICTED: LOW QUALITY PROTEIN: transcri | 0.818 | 0.930 | 0.541 | 1e-179 | |
| 449465695 | 629 | PREDICTED: transcription factor GTE4-lik | 0.818 | 0.930 | 0.539 | 1e-179 | |
| 302143389 | 612 | unnamed protein product [Vitis vinifera] | 0.696 | 0.813 | 0.606 | 1e-171 | |
| 357474555 | 980 | Bromodomain-containing factor [Medicago | 0.567 | 0.414 | 0.627 | 1e-152 |
| >gi|356542179|ref|XP_003539547.1| PREDICTED: uncharacterized protein LOC100781720 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/686 (58%), Positives = 462/686 (67%), Gaps = 79/686 (11%)
Query: 1 MASGPIVEGNDGANREKQRYSESKVYTRKAFKGPKKQNTNATATAAADNTNAPAAAANNV 60
MASGPIV G+DGA +EKQRY+ESKVYTRKAFKGPK + A P V
Sbjct: 256 MASGPIV-GDDGA-KEKQRYTESKVYTRKAFKGPKNKGNAVITVNAVPPPPPPPPPPAAV 313
Query: 61 SAVTTTTATTTTTITTDVTANENNRDENNDVEIDKDGNNGSEGNKNENDATENSKNEYNG 120
+ + T I D +N+ +N DV + NN S
Sbjct: 314 ATTNGGDDGSATVIAVDYNNKDNSTVDNGDVRAKDNSNNASV------------------ 355
Query: 121 TKSFMNQNNGIENNRNENDNEKSSIPEQPTQTLTVADTNLDQQPVVSHLDAASDDSSSLN 180
+PE D N + V S LD SDDSSSLN
Sbjct: 356 ----------------------QPVPE---------DGNSARPQVNSMLDTVSDDSSSLN 384
Query: 181 RQQGGVVVAATTREAPSENGVVAVKSG-DGRVKISLGSSTKREMREIRKKLEIELDTVRS 239
R Q E S GV G + V+ISL S +K+E RE+R++L+ EL+ VRS
Sbjct: 385 RPQD---------EPFSVPGVGERSPGPENCVRISLASRSKQEKRELRRRLQGELNRVRS 435
Query: 240 LVKRIEAKEVQISGGVSNSGVLPVSDVVDNGI--KRGHSEVASVGV-PVTRVGITRPSRP 296
LV RIE K + + GG NS ++ V + NG+ KR HSEVAS V P R P+RP
Sbjct: 436 LVNRIEEK-LGVLGGYGNSDMM-VDRGIGNGVGAKRAHSEVASAVVTPRER----EPTRP 489
Query: 297 LNQLSISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKFPPAESNKKSKLNGKKQ 356
L+QLS+S +ENS G++E VEKEKRTP ANQFYRNSEFLL KDKFPPAESNKKSKLNGKK
Sbjct: 490 LHQLSVSVLENSQGVTEIVEKEKRTPTANQFYRNSEFLLGKDKFPPAESNKKSKLNGKKH 549
Query: 357 AGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLG 416
E+ HG G SK+ KSCSALLEKLMKHKHGWVFNAPVDV+ LGLHDYF+II HPMDLG
Sbjct: 550 VEGEMGHGMG--SKLLKSCSALLEKLMKHKHGWVFNAPVDVEGLGLHDYFSIITHPMDLG 607
Query: 417 TVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEY 476
TVK+RLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLL IFE++W +IES Y
Sbjct: 608 TVKSRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLNIFEERWAIIESNY 667
Query: 477 NREMRIGADYEMGFHTPTSRKAPPL-PPPLDMRRILDRSESITHPMDSRLKPISTTPSSR 535
RE+R G DY G +P SRKAPP PPP+DMRRILDRSES+T P K + TPSSR
Sbjct: 668 YREIRYGLDY--GAPSPVSRKAPPFRPPPIDMRRILDRSESMTQPP----KIMGITPSSR 721
Query: 536 TPAPKKPKAKDPHKRDMTYDEKQKLSTNLQSLPSEKLDNIVQIIKKRNSSLFQHDDEIEV 595
TPAPKKPKAKDPHKRDMTY+EKQKLST+LQSLPSEKLD IVQIIKKRNS+L QHDDEIEV
Sbjct: 722 TPAPKKPKAKDPHKRDMTYEEKQKLSTHLQSLPSEKLDAIVQIIKKRNSALSQHDDEIEV 781
Query: 596 DIDSVDAETLWELDRFVTNYKKSLSKNKRKAELANQARAVAQQNVQQQTPAPVVTEVRKE 655
DIDSVD ETLWELDRFVTNYKKSLSKNKRKAELA AR A+QN QQ++ APV E+ KE
Sbjct: 782 DIDSVDTETLWELDRFVTNYKKSLSKNKRKAELAILARERAEQNAQQKSQAPVAVEIPKE 841
Query: 656 IRTDDRIGSTSSPVQVEKQVDNGSRS 681
+ D+R S P Q + VDNGS++
Sbjct: 842 TQADERNVPPSLPEQGQIPVDNGSKT 867
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546972|ref|XP_003541893.1| PREDICTED: transcription factor GTE4-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225446551|ref|XP_002276195.1| PREDICTED: transcription factor GTE4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356545057|ref|XP_003540962.1| PREDICTED: transcription factor GTE4-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|147820894|emb|CAN67478.1| hypothetical protein VITISV_035453 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356515098|ref|XP_003526238.1| PREDICTED: uncharacterized protein LOC100780669 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449526541|ref|XP_004170272.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449465695|ref|XP_004150563.1| PREDICTED: transcription factor GTE4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|302143389|emb|CBI21950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357474555|ref|XP_003607562.1| Bromodomain-containing factor [Medicago truncatula] gi|355508617|gb|AES89759.1| Bromodomain-containing factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| TAIR|locus:2038565 | 766 | GTE4 "AT1G06230" [Arabidopsis | 0.647 | 0.604 | 0.534 | 2.9e-119 | |
| TAIR|locus:2032692 | 461 | GTE3 "AT1G73150" [Arabidopsis | 0.393 | 0.609 | 0.453 | 7.6e-71 | |
| TAIR|locus:2030958 | 487 | AT1G17790 "AT1G17790" [Arabido | 0.215 | 0.316 | 0.546 | 8.3e-68 | |
| TAIR|locus:2155715 | 590 | GTE7 "AT5G65630" [Arabidopsis | 0.188 | 0.228 | 0.492 | 1.1e-47 | |
| TAIR|locus:2086498 | 813 | GTE8 "AT3G27260" [Arabidopsis | 0.307 | 0.270 | 0.360 | 4.3e-31 | |
| TAIR|locus:2044722 | 386 | IMB1 "AT2G34900" [Arabidopsis | 0.253 | 0.468 | 0.345 | 4.2e-29 | |
| TAIR|locus:2158564 | 1061 | NPX1 "nuclear protein X1" [Ara | 0.187 | 0.126 | 0.437 | 1.3e-27 | |
| TAIR|locus:2082289 | 620 | BET10 "AT3G01770" [Arabidopsis | 0.2 | 0.230 | 0.44 | 3.2e-26 | |
| UNIPROTKB|H9L2H3 | 859 | LOC100859056 "Uncharacterized | 0.219 | 0.182 | 0.379 | 1.4e-24 | |
| RGD|1306678 | 952 | Brdt "bromodomain, testis-spec | 0.321 | 0.241 | 0.316 | 8.4e-24 |
| TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 255/477 (53%), Positives = 316/477 (66%)
Query: 205 KSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAKEVQISGGVSNSGVLPVS 264
+ DGR++I + S+TK++ EIRKKLE +L+ VR +VK+IE KE +I G ++S VL ++
Sbjct: 262 EDADGRIRIHVASTTKQQKEEIRKKLEDQLNVVRGMVKKIEDKEGEI-GAYNDSRVL-IN 319
Query: 265 DVVDNGIKRGHSEVASVGVPVTRVGITRPSRPLNQLSISTVENSLGLSENVEKEKRTPKA 324
++NG R S AS G+P R I P RP+NQLSIS +EN+ G++E+VEKEKRTPKA
Sbjct: 320 TGINNGGGRILSGFASAGLP--REVIRAP-RPVNQLSISVLENTQGVNEHVEKEKRTPKA 376
Query: 325 NQFYRNSEFLLAKDKFPPAESNKKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMK 384
NQFYRNSEFLL DK PPAESNKKSK + KKQ G ++ HGFG G+K+FK+CSALLE+LMK
Sbjct: 377 NQFYRNSEFLLG-DKLPPAESNKKSKSSSKKQGG-DVGHGFGAGTKVFKNCSALLERLMK 434
Query: 385 HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444
HKHGWVFNAPVDVK LGL DY+TII HPMDLGT+K+ L KN YKSP+EFAEDVRLTFHNA
Sbjct: 435 HKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNA 494
Query: 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREMRIGADYEMGFHTPT--SRKAPPLP 502
MTYNP+GQDVH+MA LL+IFE++W VIE++YNREMR YEM TPT SR P +P
Sbjct: 495 MTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMRFVTGYEMNLPTPTMRSRLGPTMP 554
Query: 503 PP-LDMRRILDRSE-SITHPMDSR-LXXXXXXXXXXXXXXXXXXXXXXXXXXMTYDEKQK 559
PP +++R +DR++ S P + MTY+EKQK
Sbjct: 555 PPPINVRNTIDRADWSNRQPTTTPGRTPTSATPSGRTPALKKPKANEPNKRDMTYEEKQK 614
Query: 560 LSTNLQSLPSEKLDNIVQIIKKRNSSLFQHXXXXXXXXXXXXAETLWELDRFVTNYKKSL 619
LS +LQ+LP +KLD IVQI+ KRN+++ ETLWELDRFVTNYKK L
Sbjct: 615 LSGHLQNLPPDKLDAIVQIVNKRNTAVKLRDEEIEVDIDSVDPETLWELDRFVTNYKKGL 674
Query: 620 SKNKRKAELXXXXXXXXXXXXXXXXXXXXXXX--XRKEIRTDDRIGSTSSPVQVEKQ 674
SK KRKAEL R+ T + T P QVEKQ
Sbjct: 675 SKKKRKAELAIQARAEAERNSQQQMAPAPAAHEFSREGGNTAKKTLPTPLPSQVEKQ 731
|
|
| TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H9L2H3 LOC100859056 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| RGD|1306678 Brdt "bromodomain, testis-specific" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LNC4 | GTE4_ARATH | No assigned EC number | 0.5577 | 0.7286 | 0.6801 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 715 | |||
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 6e-58 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 4e-42 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 2e-30 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-29 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 4e-29 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 1e-27 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 9e-25 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 2e-22 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 2e-22 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 4e-20 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 1e-17 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 2e-17 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 5e-16 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 2e-13 | |
| cd05502 | 109 | cd05502, Bromo_tif1_like, Bromodomain; tif1_like s | 3e-13 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 4e-12 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 9e-12 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 4e-11 | |
| cd05510 | 112 | cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s | 7e-11 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 1e-10 | |
| cd05528 | 112 | cd05528, Bromo_AAA, Bromodomain; sub-family co-occ | 1e-10 | |
| cd05513 | 98 | cd05513, Bromo_brd7_like, Bromodomain, brd7_like s | 1e-09 | |
| cd05501 | 102 | cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li | 2e-09 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 4e-09 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 5e-09 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 5e-09 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 1e-08 | |
| cd05518 | 103 | cd05518, Bromo_polybromo_IV, Bromodomain, polybrom | 3e-08 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 5e-08 | |
| cd05516 | 107 | cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su | 6e-08 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 6e-08 | |
| cd05517 | 103 | cd05517, Bromo_polybromo_II, Bromodomain, polybrom | 6e-07 | |
| cd05522 | 104 | cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i | 1e-06 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 9e-05 | |
| cd05524 | 113 | cd05524, Bromo_polybromo_I, Bromodomain, polybromo | 1e-04 | |
| cd05491 | 119 | cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like s | 2e-04 | |
| pfam05110 | 1154 | pfam05110, AF-4, AF-4 proto-oncoprotein | 5e-04 | |
| cd05494 | 114 | cd05494, Bromodomain_1, Bromodomain; uncharacteriz | 5e-04 |
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 6e-58
Identities = 69/98 (70%), Positives = 75/98 (76%)
Query: 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPK 431
K C LL KLMKHK GWVFNAPVDV LGL DYF II+ PMDLGTVK +L K Y SP+
Sbjct: 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPE 61
Query: 432 EFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
EFA DVRLTF NAM YNP G DVH MA++LLKIFE +W
Sbjct: 62 EFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >gnl|CDD|99923 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein | Back alignment and domain information |
|---|
| >gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.95 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.95 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.94 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.94 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.93 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.93 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.93 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.93 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.93 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.93 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.93 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.93 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.92 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.92 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.92 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.92 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.91 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.91 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.91 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.91 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.9 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.89 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.89 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.89 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.88 | |
| smart00297 | 107 | BROMO bromo domain. | 99.88 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.88 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.88 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.87 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.87 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.85 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.85 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.84 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.84 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.83 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.7 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.69 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.67 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 99.45 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 99.38 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 99.17 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.93 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.88 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 98.74 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.72 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 98.72 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.64 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.61 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 98.07 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 97.74 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 97.03 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 94.6 | |
| PF05110 | 1191 | AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 | 92.92 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 87.07 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 85.05 |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=398.35 Aligned_cols=258 Identities=44% Similarity=0.681 Sum_probs=184.1
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 005065 365 FGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (715)
Q Consensus 365 ~~~~~el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDLsTIkkKL~~~~Y~s~~EF~~DVrLIF~NA 444 (715)
...+..+|++|..||.+||+|+++|||+.|||++.||+||||+||||||||+|||+||.++.|.++.+|++||||||.||
T Consensus 217 ~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Nc 296 (640)
T KOG1474|consen 217 SKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNC 296 (640)
T ss_pred ccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHH
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-C-----CCC----CCCC--------CCCCC-CCCh
Q 005065 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREMRIGADYEM-G-----FHT----PTSR--------KAPPL-PPPL 505 (715)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~e~~~e~~~~~d~~~-~-----~~~----p~sr--------ka~~~-~~~~ 505 (715)
|+||++|++||.||..|+++|+.+|+.++.++............ . ... +... ..+.. ..+.
T Consensus 297 m~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (640)
T KOG1474|consen 297 MTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELMSE 376 (640)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccccH
Confidence 99999999999999999999999999987766443221110000 0 000 0000 00000 0000
Q ss_pred hHHHh-hhhcccccCCCCCCC-----CCCCCCCC---------CCC--------CCCCCCCCCCCCCCCCCHHHHHHHHH
Q 005065 506 DMRRI-LDRSESITHPMDSRL-----KPISTTPS---------SRT--------PAPKKPKAKDPHKRDMTYDEKQKLST 562 (715)
Q Consensus 506 ~~~r~-~~~ses~~qp~k~~~-----kp~s~~p~---------~r~--------~~~KK~k~~d~~krpMT~eEK~kLs~ 562 (715)
+++.. ..........+...+ .+....+. .+. ...++.......++.||..|+..|..
T Consensus 377 ~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~ 456 (640)
T KOG1474|consen 377 EERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKE 456 (640)
T ss_pred HhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccchh
Confidence 10000 000000000000000 00000000 000 11122333456788999999999999
Q ss_pred HhcC-CChhhHHHHHHHH--HhhcCCCCCCCCcEEEECCCCC-------------HHHHHHHHHHHHHHHhhhchh
Q 005065 563 NLQS-LPSEKLDNIVQII--KKRNSSLFQHDDEIEVDIDSVD-------------AETLWELDRFVTNYKKSLSKN 622 (715)
Q Consensus 563 dIn~-Lp~EkL~~VV~II--k~~eP~l~~~~dEIEIDIDtL~-------------~~TLreLeryV~~~kK~~~K~ 622 (715)
.++. |++.+|..+++|+ ..+.+.+.+.+++|++|++.++ ..|+|++.+++..+...+.+.
T Consensus 457 ~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~ 532 (640)
T KOG1474|consen 457 LLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSKA 532 (640)
T ss_pred hccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHHHHHHH
Confidence 9999 5999999999999 5577888889999999999999 999999999999986655543
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
| >PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian) | Back alignment and domain information |
|---|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 715 | ||||
| 3jvl_A | 120 | Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le | 4e-21 | ||
| 2i8n_A | 114 | Solution Structure Of The Second Bromodomain Of Brd | 7e-21 | ||
| 3oni_A | 114 | Crystal Structure Of The Second Bromodomain Of Huma | 7e-21 | ||
| 2dvv_A | 112 | Crystal Structure Of The Second Bromodomain Of The | 9e-21 | ||
| 2g4a_A | 116 | Solution Structure Of A Bromodomain From Ring3 Prot | 2e-20 | ||
| 2lsp_B | 128 | Solution Structures Of Brd4 Second Bromodomain With | 4e-20 | ||
| 2ouo_A | 130 | Crystal Structure Of The Bromo Domain 2 In Human Br | 5e-20 | ||
| 2wp1_A | 126 | Structure Of Brdt Bromodomain 2 Bound To An Acetyla | 4e-19 | ||
| 2dww_A | 114 | Crystal Structure Of Bromodomain-Containing Protein | 6e-18 | ||
| 2oo1_A | 113 | Crystal Structure Of The Bromo Domain 2 Of Human Br | 1e-17 | ||
| 2e7n_A | 117 | Solution Structure Of The Second Bromodomain From H | 1e-17 | ||
| 4don_A | 145 | Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy | 3e-16 | ||
| 4a9e_A | 154 | N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- | 4e-16 | ||
| 2ydw_A | 153 | Crystal Structure Of The First Bromodomain Of Human | 4e-16 | ||
| 3jvj_A | 131 | Crystal Structure Of The Bromodomain 1 In Mouse Brd | 5e-16 | ||
| 2oss_A | 127 | Crystal Structure Of The Bromo Domain 1 In Human Br | 7e-16 | ||
| 4hbw_A | 127 | Crystal Structure Of The First Bromodomain Of Human | 7e-16 | ||
| 2wp2_A | 120 | Structure Of Brdt Bromodomain Bd1 Bound To A Diacet | 2e-15 | ||
| 2rfj_A | 119 | Crystal Structure Of The Bromo Domain 1 In Human Br | 3e-15 | ||
| 2l5e_A | 128 | Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt | 1e-14 | ||
| 2nxb_A | 123 | Crystal Structure Of Human Bromodomain Containing P | 2e-14 | ||
| 2yw5_A | 138 | Solution Structure Of The Bromodomain From Human Br | 2e-14 | ||
| 1x0j_A | 122 | Crystal Structure Analysis Of The N-Terminal Bromod | 3e-13 | ||
| 3aqa_A | 128 | Crystal Structure Of The Human Brd2 Bd1 Bromodomain | 4e-13 | ||
| 3dwy_A | 119 | Crystal Structure Of The Bromodomain Of Human Crebb | 5e-13 | ||
| 1jsp_B | 121 | Nmr Structure Of Cbp Bromodomain In Complex With P5 | 7e-13 | ||
| 3i3j_A | 124 | Crystal Structure Of The Bromodomain Of Human Ep300 | 1e-12 | ||
| 3q2e_A | 123 | Crystal Structure Of The Second Bromodomain Of Huma | 3e-11 | ||
| 3g0l_A | 117 | Crystal Structure Of Human Bromodomain Adjacent To | 6e-11 | ||
| 2e7o_A | 112 | Solution Structure Of The Bromodomain From Human Br | 7e-11 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 4e-10 | ||
| 2ri7_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 4e-10 | ||
| 3qzs_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 1e-09 | ||
| 3qzt_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 2e-09 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 2e-09 | ||
| 3mb3_A | 135 | Crystal Structure Of The Second Bromodomain Of Plec | 3e-09 | ||
| 3uv2_A | 126 | Crystal Structure Of The Bromodomain Of Human Nucle | 3e-09 | ||
| 3gg3_A | 119 | Crystal Structure Of The Bromodomain Of Human Pcaf | 3e-09 | ||
| 3fkm_X | 166 | Plasmodium Falciparum Bromodomain-Containing Protei | 3e-09 | ||
| 1n72_A | 118 | Structure And Ligand Of A Histone Acetyltransferase | 4e-09 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 7e-09 | ||
| 1e6i_A | 121 | Bromodomain From Gcn5 Complexed With Acetylated H4 | 7e-09 | ||
| 2yyn_A | 135 | Crystal Sturcture Of Human Bromodomain Protein Leng | 2e-08 | ||
| 3rcw_A | 135 | Crystal Structure Of The Bromodomain Of Human Brd1 | 7e-08 | ||
| 3lxj_A | 136 | Crystal Structure Of The Bromodomain Of Human Aaa D | 1e-07 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 2e-07 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 6e-06 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 2e-07 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 1e-05 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 3e-07 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 3e-07 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 6e-06 | ||
| 3nxb_A | 116 | Crystal Structure Of The Bromodomain Of Human Cecr2 | 3e-07 | ||
| 1f68_A | 103 | Nmr Solution Structure Of The Bromodomain From Huma | 5e-07 | ||
| 3d7c_A | 112 | Crystal Structure Of The Bromodomain Of Human Gcn5, | 6e-07 | ||
| 2ktb_B | 121 | Solution Structure Of The Second Bromodomain Of Hum | 8e-07 | ||
| 3hme_A | 123 | Crystal Structure Of Human Bromodomain Containing 9 | 8e-07 | ||
| 3ljw_A | 120 | Crystal Structure Of The Second Bromodomain Of Huma | 9e-07 | ||
| 3hmf_A | 116 | Crystal Structure Of The Second Bromodomain Of Huma | 1e-06 | ||
| 3uv4_A | 158 | Crystal Structure Of The Second Bromodomain Of Huma | 2e-06 | ||
| 2dkw_A | 131 | Solution Structure Of The Bromodomain Of Human Prot | 4e-06 | ||
| 3hmh_A | 155 | Crystal Structure Of The Second Bromodomain Of Huma | 1e-05 | ||
| 3dai_A | 130 | Crystal Structure Of The Bromodomain Of The Human A | 2e-05 | ||
| 3tlp_A | 150 | Crystal Structure Of The Fourth Bromodomain Of Huma | 4e-05 | ||
| 2dat_A | 123 | Solution Structure Of The Bromodomain Of Human SwiS | 4e-05 | ||
| 2i7k_A | 117 | Solution Structure Of The Bromodomain Of Human Brd7 | 1e-04 | ||
| 2d9e_A | 121 | Solution Structure Of The Bromodomain Of Peregrin L | 1e-04 | ||
| 2grc_A | 129 | 1.5 A Structure Of Bromodomain From Human Brg1 Prot | 3e-04 | ||
| 3uvd_A | 124 | Crystal Structure Of The Bromodomain Of Human Trans | 3e-04 | ||
| 2h60_A | 128 | Solution Structure Of Human Brg1 Bromodomain Length | 4e-04 |
| >pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 | Back alignment and structure |
|
| >pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 | Back alignment and structure |
| >pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 | Back alignment and structure |
| >pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 | Back alignment and structure |
| >pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 | Back alignment and structure |
| >pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 | Back alignment and structure |
| >pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 | Back alignment and structure |
| >pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 | Back alignment and structure |
| >pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 | Back alignment and structure |
| >pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 | Back alignment and structure |
| >pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 | Back alignment and structure |
| >pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 | Back alignment and structure |
| >pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 | Back alignment and structure |
| >pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 | Back alignment and structure |
| >pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 | Back alignment and structure |
| >pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 | Back alignment and structure |
| >pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 | Back alignment and structure |
| >pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 | Back alignment and structure |
| >pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 | Back alignment and structure |
| >pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 | Back alignment and structure |
| >pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 | Back alignment and structure |
| >pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 | Back alignment and structure |
| >pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 | Back alignment and structure |
| >pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 | Back alignment and structure |
| >pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 | Back alignment and structure |
| >pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 | Back alignment and structure |
| >pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 | Back alignment and structure |
| >pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 | Back alignment and structure |
| >pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 | Back alignment and structure |
| >pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 | Back alignment and structure |
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
| >pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 | Back alignment and structure |
| >pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 | Back alignment and structure |
| >pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 | Back alignment and structure |
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
| >pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 | Back alignment and structure |
| >pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 | Back alignment and structure |
| >pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 | Back alignment and structure |
| >pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 | Back alignment and structure |
| >pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 | Back alignment and structure |
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
| >pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 | Back alignment and structure |
| >pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 | Back alignment and structure |
| >pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 | Back alignment and structure |
| >pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 | Back alignment and structure |
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
| >pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 | Back alignment and structure |
| >pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 | Back alignment and structure |
| >pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 | Back alignment and structure |
| >pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 | Back alignment and structure |
| >pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 | Back alignment and structure |
| >pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 | Back alignment and structure |
| >pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
| >pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 | Back alignment and structure |
| >pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 | Back alignment and structure |
| >pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 | Back alignment and structure |
| >pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 | Back alignment and structure |
| >pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 | Back alignment and structure |
| >pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123 | Back alignment and structure |
| >pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 | Back alignment and structure |
| >pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 | Back alignment and structure |
| >pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 | Back alignment and structure |
| >pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 | Back alignment and structure |
| >pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 5e-51
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 369 SKIFKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN 425
S+ K CS +L+++ KH W F PVDV+ LGLHDY II+HPMD+ T+K++L
Sbjct: 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESR 67
Query: 426 WYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475
Y+ +EF DVRL F N YNP +V MA +L +FE ++ + E
Sbjct: 68 EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 | Back alignment and structure |
|---|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 | Back alignment and structure |
|---|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
| >2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 90 | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.95 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.95 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.95 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.95 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.95 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.95 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.94 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.94 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.94 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.94 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.94 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.94 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.94 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.94 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.94 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.94 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.94 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.94 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.93 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.93 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.93 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.93 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.93 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.93 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.93 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.92 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.92 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.91 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.91 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.91 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.9 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.89 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.89 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.88 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.87 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.86 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.84 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.84 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.79 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.78 | |
| 2jns_A | 90 | Bromodomain-containing protein 4; ET-domain, struc | 99.75 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.67 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.6 | |
| 2lm0_A | 125 | AF4/FMR2 family member 1/protein AF-9 chimera; int | 95.0 |
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-29 Score=232.00 Aligned_cols=108 Identities=43% Similarity=0.817 Sum_probs=103.1
Q ss_pred CchHHHHHHHHHHHHHHcCCC---CCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 005065 367 TGSKIFKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (715)
Q Consensus 367 ~~~el~k~C~~IL~kL~k~k~---a~pF~~PVD~~~l~~PDYy~IIK~PMDLsTIkkKL~~~~Y~s~~EF~~DVrLIF~N 443 (715)
.+.+++++|..||..|+++++ +|+|.+|||+..+++||||+||++||||+||++||+++.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 367889999999999999986 89999999999888999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005065 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (715)
Q Consensus 444 A~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (715)
|++||++++.||.+|..|+++|+.+|+.|+.
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999998753
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
| >2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 715 | ||||
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 1e-31 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 2e-31 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 5e-30 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 1e-29 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 4e-28 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 2e-27 |
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (292), Expect = 1e-31
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPK 431
+ +L +L H W F PV+ + + DY+ I+ PMDL T++ +L N Y+ +
Sbjct: 5 DAAIQNILTELQNHAAAWPFLQPVNKEEV--PDYYDFIKEPMDLSTMEIKLESNKYQKME 62
Query: 432 EFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREM 480
+F D RL F+N YN + + A +L K F +K I EY+ +
Sbjct: 63 DFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIP-EYSHLI 110
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.94 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.94 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.94 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.93 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.92 |
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-27 Score=210.58 Aligned_cols=100 Identities=30% Similarity=0.538 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 005065 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (715)
Q Consensus 370 el~k~C~~IL~kL~k~k~a~pF~~PVD~~~l~~PDYy~IIK~PMDLsTIkkKL~~~~Y~s~~EF~~DVrLIF~NA~~YN~ 449 (715)
++...|..||..|++|+.+|+|..||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 79 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 79 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChhh--CcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence 678999999999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 005065 450 KGQDVHIMAEQLLKIFEDKWVV 471 (715)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~~~~ 471 (715)
++|.++.+|..|+++|+++|++
T Consensus 80 ~~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 80 PDSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998764
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|