Citrus Sinensis ID: 005075

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-----
MITFMDSKEKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEVTSGWNGNCVTPYGGFSAFLREDDNKLMRNGIGNVNGPSSNNGNNLMAKGKVRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRKKSRLPQPPDFPLDGQLPMPSFSGSLLGPNSPFGCLPDNTPAGMQGARHAHYGLSLSDLHLNKLQSGLSPAGFPPFDRAAKPTRASNSPILQKPSMSENISCLLTMSHSTQPSKKADDLKTPQLVLFGKPILTEQQMSHSCSGDTVSPVRTGNSSSEGNLDKLTNFSDGSGSALQQQGLPDRSFCEVFQWYKDNRQETEPSLETGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
ccccccccHHHHHHHccccHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEEccccccccccEEEccccHHHcccccccccccccEEEEEEEccccEEEEEEEEEccccEEEEccccHHHHcccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEccccccccEEEHHHHHHHHccccccccEEEEEEcccccccEEEEEcEEEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHcccccccccEEEEEEccccEEEEcccccccccccEEEEEEEEcHHHHccccccEEEEEEcccc
cccccccHHHcccccccccHHHHHHHcccccEccccccEEEEcccccHHHHHccccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccEEEEEEEEccccccEEEcccccEEEcccEEEcccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEHHHcccHHHHHHHHHHHcccccHHHccEEEEEcccccEEEcccccccHHHHHHEEEEEEcEHEEcccccEEEEEEEEEEEc
MITFMDSKEKLKEVEKCLDSQLWHACaggmvqmppvnsrvfyfpqghaehacgpvdfrscrrippyilcrvspikfmadpetdEVYAKIKlvpvstndpdfdnddgiagihsnetqdkpaSFAKTltqsdanngggfsvprycaetifprldysadppvqtilakdvhgetwkfrhiyrgtprrhllttgwstfvnhkklvagDSIVFLRAENGDLCVGIRRakrgigggpevtsgwngncvtpyggfsaflreDDNKLMRngignvngpssnngnnlmakgkvrpeSVIEAATLAanrqpfevvyyprastpefcVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGtissvqvsdplywpdspwrllqvtwdepdllqnvkrVSPWLVELVsnmptihlspfspprkksrlpqppdfpldgqlpmpsfsgsllgpnspfgclpdntpagmqgarhahyglslsdLHLNKLqsglspagfppfdraakptrasnspilqkpsmsenisclltmshstqpskkaddlktpqlvlfgkpilteqqmshscsgdtvspvrtgnsssegnldkltnfsdgsgsalqqqglpdrsfCEVFQWYKdnrqetepsletghckvfmesedvgrtlDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVtgavkhigdepFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
mitfmdskeKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNETQDKPASFAKTLTqsdanngggfSVPRYCAETIFPRLDYSADPPVQTIlakdvhgetwkfrhiyrgtprrHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRgigggpevtsgwngncVTPYGGFSAFLREDDNKLMRNGIGnvngpssnngnnLMAKGKVRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRKKSRLPQPPDFPLDGQLPMPSFSGSLLGPNSPFGCLPDNTPAGMQGARHAHYGLSLSDLHLNKLQSGLSPAGFPPFDRAAKPTrasnspilqkpSMSENISCLLTMSHStqpskkaddLKTPQLVLFGKPILTEQQMSHSCSGDTVSPVRTGNSSSEGNLDKLTNFSDGSGSALQQQGLPDRSFCEVFQWYKDNRqetepsletghCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
MITFMDSKEKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVgirrakrgigggPEVTSGWNGNCVTPYGGFSAFLREDDNKLMRngignvngpssnngnnLMAKGKVRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRKKSRLPQPPDFPLDGQLPMPSFSGSLLGPNSPFGCLPDNTPAGMQGARHAHYGLSLSDLHLNKLQSGLSPAGFPPFDRAAKPTRASNSPILQKPSMSENISCLLTMSHSTQPSKKADDLKTPQLVLFGKPILTEQQMSHSCSGDTVSPVRTGNSSSEGNLDKLTNFSDGSGSALQQQGLPDRSFCEVFQWYKDNRQETEPSLETGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
*************VEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPV****************************************GGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEVTSGWNGNCVTPYGGFSAFLRED*********************************VIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIH***********************************************************YGL*********************************************************************LVLFGK*****************************************************SFCEVFQWYKD**********TGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAV**
********************QLWHACAGGMVQMPPVNSRVFYFPQGHAE*************IPPYILCRVSPIKFMADPETDEVYAKIKL*****************************SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRG*************************************************************SVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNM******************************************************************************GLSPAGFPPF*RA***********************************************F*************************NSSSEG***************************************************FMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTII****FNLICFVVAVAV**
MITFMDSKEKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEVTSGWNGNCVTPYGGFSAFLREDDNKLMRNGIGNVNGPSSNNGNNLMAKGKVRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPF**********QPPDFPLDGQLPMPSFSGSLLGPNSPFGCLPDNTPAGMQGARHAHYGLSLSDLHLNKLQSGLSPAGFPPFDRAAKPTRASNSPILQKPSMSENISCLLTMSH*********DLKTPQLVLFGKPILTEQ********************SEGNLDKLTNFSDGSGSALQQQGLPDRSFCEVFQWYKDNRQETEPSLETGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
*****DS*****EVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVST**********************PASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEVTSGWNGNCVTPYGGFSAFLR**D***************************VRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRK*****************************SPFG***DNTPAGMQG**HAHYGLSLSDLHLNKLQSGLSPAGF**********************************************KTPQLVLF*KPILT**********************************************************************TGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
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MITFMDSKEKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEVTSGWNGNCVTPYGGFSAFLREDDNKLMRNGIGNVNGPSSNNGNNLMAKGKVRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRKKSRLPQPPDFPLDGQLPMPSFSGSLLGPNSPFGCLPDNTPAGMQGARHAHYGLSLSDLHLNKLQSGLSPAGFPPFDRAAKPTRASNSPILQKPSMSENISCLLTMSHSTQPSKKADDLKTPQLVLFGKPILTEQQMSHSCSGDTVSPVRTGNSSSEGNLDKLTNFSDGSGSALQQQGLPDRSFCEVFQWYKDNRQETEPSLETGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFRFQLFRLLAIFSLYTIISLKGFNLICFVVAVAVTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query715 2.2.26 [Sep-21-2011]
Q653H7700 Auxin response factor 18 yes no 0.916 0.935 0.629 0.0
Q9AV47698 Auxin response factor 22 no no 0.907 0.929 0.607 0.0
Q93YR9670 Auxin response factor 16 yes no 0.889 0.949 0.572 0.0
Q6K223681 Auxin response factor 8 O no no 0.906 0.951 0.564 0.0
Q9SKN5693 Auxin response factor 10 no no 0.850 0.877 0.570 0.0
Q7XKK6699 Auxin response factor 10 no no 0.895 0.915 0.495 1e-171
Q01I35699 Auxin response factor 10 N/A no 0.895 0.915 0.495 1e-171
Q84WU6585 Auxin response factor 17 no no 0.587 0.717 0.441 1e-97
Q6H6V4 908 Auxin response factor 6 O no no 0.503 0.396 0.401 8e-74
A2X1A1 908 Auxin response factor 6 O N/A no 0.503 0.396 0.401 8e-74
>sp|Q653H7|ARFR_ORYSJ Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1 Back     alignment and function desciption
 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/702 (62%), Positives = 516/702 (73%), Gaps = 47/702 (6%)

Query: 1   MITFMDS--KEKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHA--CGPVD 56
           MITF+DS  KE+ +E +KCLD QLWHACAGGMVQMPPV+S+V+YFPQGHAEHA   GPV+
Sbjct: 1   MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVE 60

Query: 57  FRSCRRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNET- 115
           F   R +P  +LCRV+ ++FMADP+TDEV+AKI+LVPV  N+  +  D       +    
Sbjct: 61  FPGGR-VPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAA 119

Query: 116 --QDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWK 173
             ++KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQT+LAKDVHG  WK
Sbjct: 120 AQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWK 179

Query: 174 FRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEV 233
           FRHIYRGTPRRHLLTTGWSTFVN KKLVAGDSIVF+R ENGDLCVGIRRAK+G  GGPE 
Sbjct: 180 FRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEF 239

Query: 234 ---------TSGWNGNCVTPYGGFSAFLREDD--NKLMRNGIGNVNGPSSNNGNNLMAKG 282
                    T    GN    YGGFS FLR DD  NK+     G V             + 
Sbjct: 240 LPPPPPPPPTPAAGGN----YGGFSMFLRGDDDGNKMAAAARGKV-------------RA 282

Query: 283 KVRPESVIEAATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFET 342
           +VRPE V+EAA LA + QPFEVVYYPRASTPEFCVKA  V+AA++ +W +GMRFKMAFET
Sbjct: 283 RVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFET 342

Query: 343 EDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMP 402
           EDSSRISWFMGT+S+VQV+DP+ WP+SPWRLLQV+WDEPDLLQNVKRVSPWLVELVSNMP
Sbjct: 343 EDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMP 402

Query: 403 TIHLSPFSPPRKKSRLPQPPDFPLDGQLPMPSFSGSLLGPN-SPFGCLPDNTPAGMQGAR 461
            IHL+PFSPPRKK  +P  P+ P+DGQ P P F G+ L     P    PD TPAG+QGAR
Sbjct: 403 AIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGAR 462

Query: 462 HAHYGLSLSDLHLNKLQSGLSPAGFPPFDRAAKPTRASNSPILQKPSMSENISCLLTMSH 521
           HA +G+SLSDLHLNKLQS LSP G    D   +P R +   I+  P+  ++ISCLLT+  
Sbjct: 463 HAQFGISLSDLHLNKLQSSLSPHGLHQLDHGMQP-RIAAGLIIGHPAARDDISCLLTIG- 520

Query: 522 STQPSKKADDLKTP-QLVLFGKPILTEQQMSHSCSGDTVSPVRTGNSSSEGNLDKLTNF- 579
           S Q +KK+D  K P QL+LFGKPILTEQQ+S    GD  S V    SSS+GN +   N  
Sbjct: 521 SPQNNKKSDGKKAPAQLMLFGKPILTEQQIS---LGDAAS-VDVKKSSSDGNAENTVNKS 576

Query: 580 -SDGSGSALQQQGLPDRSFCEVFQWYKDNRQETEPSLETGHCKVFMESEDVGRTLDLSLL 638
            SD S     Q G  D   C      +DN+   +  LETGHCKVFM+SEDVGRTLDLS++
Sbjct: 577 NSDVSSPRSNQNGTTDNLSCGGVPLCQDNKV-LDVGLETGHCKVFMQSEDVGRTLDLSVV 635

Query: 639 GSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPF 680
           GSY+ELY++LA+MFGIE AE +SH+ YRD  GA+KH GDEPF
Sbjct: 636 GSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPF 677
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9AV47|ARFV_ORYSJ Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1 Back     alignment and function description
>sp|Q93YR9|ARFP_ARATH Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q6K223|ARFH_ORYSJ Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKN5|ARFJ_ARATH Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1 Back     alignment and function description
>sp|Q7XKK6|ARFJ_ORYSJ Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3 Back     alignment and function description
>sp|Q01I35|ARFJ_ORYSI Auxin response factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2 Back     alignment and function description
>sp|Q84WU6|ARFQ_ARATH Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query715
206572097702 putative auxin response factor ARF16 [Ma 0.942 0.960 0.821 0.0
255556996702 Auxin response factor, putative [Ricinus 0.938 0.955 0.803 0.0
449482590701 PREDICTED: auxin response factor 18-like 0.942 0.961 0.778 0.0
449451004698 PREDICTED: auxin response factor 18-like 0.939 0.962 0.777 0.0
356537563700 PREDICTED: auxin response factor 18-like 0.939 0.96 0.766 0.0
225439992701 PREDICTED: auxin response factor 18-like 0.939 0.958 0.759 0.0
224069455705 predicted protein [Populus trichocarpa] 0.960 0.974 0.726 0.0
224140191700 predicted protein [Populus trichocarpa] 0.941 0.961 0.718 0.0
356570756688 PREDICTED: auxin response factor 18-like 0.916 0.952 0.716 0.0
356545983647 PREDICTED: auxin response factor 18-like 0.865 0.956 0.708 0.0
>gi|206572097|gb|ACI13681.1| putative auxin response factor ARF16 [Malus x domestica] Back     alignment and taxonomy information
 Score = 1149 bits (2972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/683 (82%), Positives = 616/683 (90%), Gaps = 9/683 (1%)

Query: 1   MITFMDSKEKLKEVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSC 60
           MITFMDSKEKLKE ++CLD QLWHACAGGMVQMPPVN++VFYFPQGHAEHACGPVDFR+C
Sbjct: 1   MITFMDSKEKLKEGDRCLDPQLWHACAGGMVQMPPVNAKVFYFPQGHAEHACGPVDFRNC 60

Query: 61  RRIPPYILCRVSPIKFMADPETDEVYAKIKLVPVSTNDPDFDNDDGIAGIHSNETQDKPA 120
            R+P +ILCRV+ IKFMADP TDEVYAKI+LVP++  +  ++ DDGI G++  ET DKPA
Sbjct: 61  PRVPAHILCRVAAIKFMADPGTDEVYAKIRLVPLNGAEAGYE-DDGIGGLNGTETPDKPA 119

Query: 121 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRG 180
           SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRG
Sbjct: 120 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRG 179

Query: 181 TPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPEVTSGWN-- 238
           TPRRHLLTTG STFVNHKKLV+GDSIVFLRAENGDLCVGIRRAKRGIGGG E +SGWN  
Sbjct: 180 TPRRHLLTTGSSTFVNHKKLVSGDSIVFLRAENGDLCVGIRRAKRGIGGGSESSSGWNPM 239

Query: 239 -GNCVTPYGGFSAFLREDDNKLMRNGIGNVNGPSSNNGNNLMAKGKVRPESVIEAATLAA 297
            GNC  PYGGFSAFLRED+NKLM+NG GN     SN+  +LM KGKV PESV EAATLAA
Sbjct: 240 GGNCTVPYGGFSAFLREDENKLMKNGHGN----GSNSNGSLMGKGKVGPESVFEAATLAA 295

Query: 298 NRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISS 357
           N QPFEVVYYPRASTPEFCVKAS+VKAALQIRWC GMRFKMAFETEDSSRISWFMGTISS
Sbjct: 296 NGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWFMGTISS 355

Query: 358 VQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRKKSR 417
           VQV++PL WP+SPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMP IHL+PFSPPRKK R
Sbjct: 356 VQVAEPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIHLTPFSPPRKKMR 415

Query: 418 LPQPPDFPLDGQLPMPSFSGSLLGPNSPFGCLPDNTPAGMQGARHAHYGLSLSDLHLNKL 477
           LPQ PDFP +GQLPMP+FSG+LLGP+SPFGCLPD TPAGMQGARHAHYGLSLSD+HLNKL
Sbjct: 416 LPQHPDFPFEGQLPMPTFSGNLLGPSSPFGCLPDKTPAGMQGARHAHYGLSLSDMHLNKL 475

Query: 478 QSGLSPAGFPPFDRAAKPTRASNSPILQKPSMSENISCLLTMSHSTQPSKKADDLKTPQL 537
            +GL PAGFPP D AA P++ SN+ ++QKP+MSEN+SCLLTMSHSTQ SKK DD+K PQL
Sbjct: 476 HTGLFPAGFPPLDHAAAPSKFSNNTMIQKPTMSENLSCLLTMSHSTQTSKKPDDVKPPQL 535

Query: 538 VLFGKPILTEQQMSHSCSGDTVSPVRTGNSSSEGNLDKLTNFSDGSGSALQQQGLPDRSF 597
           +LFG+PILTEQQ+S S SGDTVSPV TGNSSS+GN DK+ N SD SGSALQQ  + +RS 
Sbjct: 536 ILFGQPILTEQQISLSSSGDTVSPVLTGNSSSDGNADKMANHSDNSGSALQQS-IQERSS 594

Query: 598 CEVFQWYKDNRQETEPSLETGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENA 657
           CE FQWYKDNR ETEP LETGHCKVFMESEDVGRTLDLSLLGSYDELY+KLA+MFGI+N+
Sbjct: 595 CEGFQWYKDNRHETEPHLETGHCKVFMESEDVGRTLDLSLLGSYDELYRKLADMFGIDNS 654

Query: 658 ETLSHLLYRDVTGAVKHIGDEPF 680
           ETL+H+LYRD TGAVKH+GDEPF
Sbjct: 655 ETLNHVLYRDGTGAVKHVGDEPF 677

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556996|ref|XP_002519531.1| Auxin response factor, putative [Ricinus communis] gi|223541394|gb|EEF42945.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449482590|ref|XP_004156337.1| PREDICTED: auxin response factor 18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449451004|ref|XP_004143252.1| PREDICTED: auxin response factor 18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356537563|ref|XP_003537296.1| PREDICTED: auxin response factor 18-like [Glycine max] Back     alignment and taxonomy information
>gi|225439992|ref|XP_002281486.1| PREDICTED: auxin response factor 18-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224069455|ref|XP_002326354.1| predicted protein [Populus trichocarpa] gi|222833547|gb|EEE72024.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224140191|ref|XP_002323468.1| predicted protein [Populus trichocarpa] gi|222868098|gb|EEF05229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356570756|ref|XP_003553551.1| PREDICTED: auxin response factor 18-like [Glycine max] Back     alignment and taxonomy information
>gi|356545983|ref|XP_003541412.1| PREDICTED: auxin response factor 18-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query715
TAIR|locus:2057517693 ARF10 "auxin response factor 1 0.730 0.753 0.598 5.2e-186
TAIR|locus:2126460670 ARF16 "auxin response factor 1 0.781 0.834 0.572 1.7e-162
TAIR|locus:2029436585 ARF17 "auxin response factor 1 0.741 0.905 0.387 9.6e-89
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.279 0.246 0.483 1.1e-78
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.276 0.182 0.495 7.9e-78
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.278 0.212 0.466 1.9e-75
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.275 0.308 0.480 9.5e-72
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.275 0.327 0.478 5e-70
TAIR|locus:2035454 902 MP "MONOPTEROS" [Arabidopsis t 0.275 0.218 0.461 8.5e-70
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.271 0.319 0.504 4.2e-69
TAIR|locus:2057517 ARF10 "auxin response factor 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1563 (555.3 bits), Expect = 5.2e-186, Sum P(2) = 5.2e-186
 Identities = 335/560 (59%), Positives = 389/560 (69%)

Query:    13 EVEKCLDSQLWHACAGGMVQMPPVNSRVFYFPQGHAEHACGPVDFRSCRRIPPYILCRVS 72
             E EK LD QLWHACAG MVQ+P +NS VFYF QGH EHA  P DF +  R+PP ILCRV 
Sbjct:     2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHA-PRVPPLILCRVV 60

Query:    73 PIKFMADPETDEVYAKIKLVPVSTNDPDFDNDD--GIAGIHSNET---QDKPASFAKTLT 127
              +KF+AD ETDEV+AKI L+P+  ND D +ND   G+    S+     ++KPASFAKTLT
Sbjct:    61 SVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLT 120

Query:   128 QSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLL 187
             QSDANNGGGFSVPRYCAETIFPRLDYSA+PPVQT++AKD+HGETWKFRHIYRGTPRRHLL
Sbjct:   121 QSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLL 180

Query:   188 TTGWSTFVNHKKLVAGDSIVFLRAENGDLCVXXXXXXXXXXXXPEVTSGWNGNCVTPYGG 247
             TTGWSTFVN KKL+AGDSIVFLR+E+GDLCV                 G N     PY G
Sbjct:   181 TTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGL-------GSNAGSDNPYPG 233

Query:   248 FSAFLREDDNKLMRXXXXXXXXXXXXXXXXLMAKGKVRPESVIEAATLAANRQPFEVVYY 307
             FS FLR DD                       A G+VR E+V EA   AA  Q FEVVYY
Sbjct:   234 FSGFLR-DDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYY 292

Query:   308 PRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWP 367
             PRASTPEFCVKA+ V++A++IRWCSGMRFKMAFETEDSSRISWFMGT+S+VQV+DP+ WP
Sbjct:   293 PRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWP 352

Query:   368 DSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPPRKKSRLPQPPDFPLD 427
             +SPWRLLQV WDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSP RKK R+PQP +FP  
Sbjct:   353 NSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSP-RKKIRIPQPFEFPFH 411

Query:   428 G-QLPM--PSFSGSLLGPNSPFGCLPDNT-PAGMQGARHAH--YGLS----LSDLHLNKL 477
             G + P+  P F+ +  G +  +    +N  PAG+QGAR A   +G      LSDL+L+  
Sbjct:   412 GTKFPIFSPGFANNGGGESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSDLNLSSY 471

Query:   478 QSGL---SPAGF-PPFDRAAKPTRASNSPILQKPSMSENISCLLTMSHST--QPSKKA-D 530
                    SPA F   F+      +A +S        S NISC LTM +    Q  KK+  
Sbjct:   472 TGNNKLHSPAMFLSSFNPRHHHYQARDS------ENSNNISCSLTMGNPAMVQDKKKSVG 525

Query:   531 DLKTPQLVLFGKPILTEQQM 550
              +KT Q VLFG+PILTEQQ+
Sbjct:   526 SVKTHQFVLFGQPILTEQQV 545
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0035198 "miRNA binding" evidence=ISS
GO:0007389 "pattern specification process" evidence=IDA
GO:0048829 "root cap development" evidence=IGI;IMP
GO:0051301 "cell division" evidence=IGI
GO:0009734 "auxin mediated signaling pathway" evidence=IMP
GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP
GO:0009743 "response to carbohydrate stimulus" evidence=IMP
GO:0010154 "fruit development" evidence=IMP
GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
GO:0048441 "petal development" evidence=IMP
GO:0048442 "sepal development" evidence=IMP
GO:0048589 "developmental growth" evidence=IMP
TAIR|locus:2126460 ARF16 "auxin response factor 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029436 ARF17 "auxin response factor 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93YR9ARFP_ARATHNo assigned EC number0.57280.88950.9492yesno
Q653H7ARFR_ORYSJNo assigned EC number0.62960.91600.9357yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query715
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 7e-41
pfam0236297 pfam02362, B3, B3 DNA binding domain 6e-27
smart0101996 smart01019, B3, B3 DNA binding domain 1e-22
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 7e-20
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 3e-04
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 5e-04
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  143 bits (363), Expect = 7e-41
 Identities = 43/84 (51%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 292 AATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWF 351
           AA  A+   PF V Y PRAST EF V  +    A+   +  GMRFKM FETEDSS   + 
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRF- 59

Query: 352 MGTISSVQVSDPLYWPDSPWRLLQ 375
            GTIS V   DP+ WP+S WR LQ
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 715
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 99.96
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.69
KOG06441113 consensus Uncharacterized conserved protein, conta 99.58
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.05
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.46
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 95.54
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 94.83
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 94.64
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 94.24
cd0599281 PB1 The PB1 domain is a modular domain mediating s 94.18
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 93.94
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 93.8
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 91.81
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 91.04
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 88.14
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 88.0
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 87.99
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 87.51
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=7.2e-35  Score=254.93  Aligned_cols=83  Identities=58%  Similarity=0.913  Sum_probs=80.6

Q ss_pred             HHHHHHcCCcEEEEEecCCCCCceEEehHHHHHHhhcCcccccEEEEEeeeCCCCceeeeeeEEEEeecCCCCCCCCCCc
Q 005075          292 AATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPW  371 (715)
Q Consensus       292 Aa~~aa~g~~F~V~Y~Pr~~~~EFvV~~~~~~~a~~~~w~~GmRFkM~fE~EDss~~~wf~GTI~~v~~~Dp~~wP~S~W  371 (715)
                      ||++|++|++|+|+||||++++||||++++|++||+++|++||||||+||+||+++++ |+|||++|++.||++||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~-~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERR-WQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccce-eeeEEeEeeccCCCCCCCCCc
Confidence            6899999999999999999999999999999999999999999999999999999976 599999999999999999999


Q ss_pred             ccee
Q 005075          372 RLLQ  375 (715)
Q Consensus       372 R~Lq  375 (715)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query715
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 4e-10
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 120 ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILA--KDVHGETWKFRHI 177
           A F K +T SD        +P++ AE  FP    S++  V+ +L   +DV+G+ W+FR+ 
Sbjct: 12  ALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLP--SSNVSVKGVLLNFEDVNGKVWRFRYS 69
Query: 178 YRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGD 215
           Y  + + ++LT GWS FV  K L AGD + F R+   D
Sbjct: 70  YWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQD 107

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query715
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 4e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  139 bits (352), Expect = 4e-39
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 109 GIHSNETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVH 168
           G   +  +   A F K +T SD        +P++ AE  FP    +       +  +DV+
Sbjct: 1   GSSGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN 60

Query: 169 GETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIG 228
           G+ W+FR+ Y  + + ++LT GWS FV  K L AGD + F R+   D  + I    R   
Sbjct: 61  GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 229 GGPE--VTSG 236
                  +SG
Sbjct: 121 DLDASGPSSG 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query715
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.95
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.68
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.49
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 94.44
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 94.02
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 93.5
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 85.46
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 84.64
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 84.04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.95  E-value=4.7e-28  Score=225.97  Aligned_cols=114  Identities=30%  Similarity=0.491  Sum_probs=103.7

Q ss_pred             CCCCcceEEEEecccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccCchh
Q 005075          114 ETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWST  193 (715)
Q Consensus       114 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~  193 (715)
                      ...++..+|.|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus         6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~   85 (130)
T 1wid_A            6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR   85 (130)
T ss_dssp             --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred             CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence            34556789999999999999999999999999999999987667789999999999999999999999999999999999


Q ss_pred             hhcccCCCCCCEEEEEEecC--CcEEEEEEEeccCc
Q 005075          194 FVNHKKLVAGDSIVFLRAEN--GDLCVGIRRAKRGI  227 (715)
Q Consensus       194 FV~~K~L~aGD~VvF~R~~n--G~l~VGIRRa~~~~  227 (715)
                      ||++|+|++||+|+|++.++  +.|+|++||+....
T Consensus        86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            99999999999999999874  57999999988744
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 715
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 8e-35
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-20
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 1e-13
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  126 bits (317), Expect = 8e-35
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 117 DKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRH 176
              A F K +T SD        +P++ AE  FP    +       +  +DV+G+ W+FR+
Sbjct: 2   SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRY 61

Query: 177 IYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGD--LCVGIRRAK 224
            Y  + + ++LT GWS FV  K L AGD + F R+   D  L +G +   
Sbjct: 62  SYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 111
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query715
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.93
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.78
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.41
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.2
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 94.11
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.9e-26  Score=206.80  Aligned_cols=107  Identities=32%  Similarity=0.537  Sum_probs=101.3

Q ss_pred             ceEEEEecccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccCchhhhccc
Q 005075          119 PASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHK  198 (715)
Q Consensus       119 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~K  198 (715)
                      .++|.|+||+|||++++||+||+++|++|||+++.....+++.|.+.|.+|++|.|+|+||++.++|+|++||..||+++
T Consensus         4 ~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~   83 (117)
T d1wida_           4 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEK   83 (117)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHT
T ss_pred             ceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHc
Confidence            46999999999999999999999999999999999888889999999999999999999999889999999999999999


Q ss_pred             CCCCCCEEEEEEec--CCcEEEEEEEecc
Q 005075          199 KLVAGDSIVFLRAE--NGDLCVGIRRAKR  225 (715)
Q Consensus       199 ~L~aGD~VvF~R~~--nG~l~VGIRRa~~  225 (715)
                      +|++||+|+|+|.+  +++++|++||+..
T Consensus        84 ~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          84 NLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             CCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            99999999999985  6789999999875
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure