Citrus Sinensis ID: 005095

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-----
Protein Sequence
MILSNGLSVQSRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVSTGVCSDDDISLKDAFGPGFFYHANYGPSSNGASGNQNSHLQPPQAISSSIDFFEARGPDAHVVLDPSIWPMYASSDQVPSTSAELSRAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHcccccccEEccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHcccccccHHHHHHHHHcccccccccHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHccccccccccccccHcccccccccccccccccccccccEEccccccccccccccccccccccccccHHcccccccHHHHHHHHHccccHcHHcccHHHHHHccccccccccHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccEcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEHcccHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEcc
Coil and Loop (DISEMBL)
milsnglsvqsrygnglsidtcfpeiksvtnsscksfgeddvstgvcsdddislkdafgpgffyhanygpssngasgnqnshlqppqaisssidffeargpdahvvldpsiwpmyassdqvpstsAELSRAaadessgfaqpavslsqpgavsggverncftsyapLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKnrelpsirgnkgatpLCMAALLGHKEMIWYLYSvtkeedlkeEDRIELLVAVIDAGLYDVALDLIQhhpqlamardgngeTALHVLArkpsafasgsqlgfWRRCiysvpgmraildPKLMHLQALELVKRLWEQVLLLDdskigellrkpsRLLFTAVELGNVEFLMVLIQMYPNliwkvddhsrsMFHIAVVHRQEKIFNLIYELGAHKDLIASYkdennnnmlhlagklappdrlkidsGAALQLRRELHWFKEIEKVVqpsyreaknsegrtphilfsEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAftvpggnddstgrpiflHYKSFMVFAVSDALALFCSATSILMFLSIITSRyaeedfvhslpNRLIIGLATLFISIATMMAAFAATLFIVLGDdfvwiaipiatgacvpVSLFALLQFPLLSDMISHLYKYSIFtrrsnhlly
Flexible Loop (DISEMBL)
MILSNGLSVQSRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVSTGVCSDDDISLKDAFGPGFFYHANYGPSSNGASGNQNSHLQPPQAISSSIDFFEARGPDAHVVLDPSIWPMYASSDQVPSTSAELSRAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNrelpsirgnkgaTPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPsafasgsqlgfWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDskigellrkpSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLagklappdrLKIDSGAALQLRRELHWfkeiekvvqpsyreaknsegrtphilfseehRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKysiftrrsnhlly
Low Complexity Region (SEG)
MILSNGLSVQSRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVSTGVCSDDDISLKDAFGPGFFYHANYGPSSNGASGNQNSHLQPPQAISSSIDFFEARGPDAHVVLDPSIWPMYASSDQVPSTSAELSRAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISiatmmaafaatlfiVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Disordered region (IsUnstruct)
************YGNGLSIDTCFPEIKSVTNSSCKSFGEDDVSTGVCSDDDISLKDAFGPGFFYHANY*************************DFFEARGPDAHVVLDPSIWPMY**************************************GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ***************ILFS***RRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRR******
Disordered Region (DISOPRED)
MILSNG*SVQSRYGNGLSIDTCFPE******************TGVCSDDDISLKDAFGPGFFYHANYGPS*N*ASGNQNSHLQPPQAISSSIDFFEARGPDAHVVLDPSIWPMYASSDQVPSTSA**********SGFAQPAV**************NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRT*************************SCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRR******
Disordered Region (DISEMBL)
********VQSRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVSTGVCSDDDISLKDAFGPGFFYHANYGPSS************PPQAISSSIDFFEARGPDAHVVLDPSIWPMYAS***************************SLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Disordered Region (DISPRO)
********************TC*************S*********VCSDDDISLKDAFGPGFFYHANYGPSSNGASGNQNSHLQPPQAISSSIDFFEARGPDAHVVLDPSIWPMYASSDQVPSTSAELSRAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILSNGLSVQSRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVSTGVCSDDDISLKDAFGPGFFYHANYGPSSNGASGNQNSHLQPPQAISSSIDFFEARGPDAHVVLDPSIWPMYASSDQVPSTSAELSRAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	715	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.418	0.506	0.256	1e-16
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.630	0.860	0.229	1e-11
A5PMU4	1280	Ankyrin repeat and steril	yes	no	0.247	0.138	0.310	2e-08
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.574	0.772	0.216	4e-08
Q92625	1134	Ankyrin repeat and SAM do	yes	no	0.247	0.156	0.305	4e-08
Q7Z6G8	1248	Ankyrin repeat and steril	no	no	0.248	0.142	0.304	7e-07
Q8BIZ1	1259	Ankyrin repeat and steril	yes	no	0.248	0.141	0.304	7e-07
P0C6S7	1260	Ankyrin repeat and steril	no	no	0.248	0.141	0.304	8e-07
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.213	0.034	0.296	1e-06
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.213	0.078	0.296	2e-06

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 154/366 (42%), Gaps = 67/366 (18%)

Query: 397 SKIGELLR----KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ 452
           SK G LL          L  A   G+VE +  L+   P L  ++D   ++  H+AV  + 
Sbjct: 219 SKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQS 278

Query: 453 EKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK----------LAPPD----------R 492
            ++  L+ +       I    D++ N  LH+A +          L+ PD          +
Sbjct: 279 SEVVKLLLDADP---AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHK 335

Query: 493 LKIDSGAALQLRRELHWFKE--------------------------IEKVVQPSYREAKN 526
             +D    L L  E  + KE                          I+  V     + K 
Sbjct: 336 TALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKR 395

Query: 527 SEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGR 586
           +     +I  S+E R+L REG   + +  +S  VVA L ATV FAA FTVPGG D++ G 
Sbjct: 396 TNKNVHNI--SKELRKLHREG---INNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGS 449

Query: 587 PIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFI 646
            + +   SF +F + +ALALF S   +++ ++++      E  V  + N+L + LA++  
Sbjct: 450 AVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKL-MWLASMCT 508

Query: 647 SIATMMAAFAATLFIVLGDDFVWIA--IPIATGACVPVSLFALLQFPLLSDMISHLYKYS 704
           S+     AF A+ +IV+G    W A  + +  G  +   L  +  + + S     + K  
Sbjct: 509 SV-----AFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKV 563

Query: 705 IFTRRS 710
              RRS
Sbjct: 564 KSARRS 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 123/535 (22%), Positives = 217/535 (40%), Gaps = 84/535 (15%)

Query: 195 SRNQDTALHIAAGARRTLFVQELVN----LMTPEDLALRNKVGNTALCFAAVSGVTKIAE 250
           +R  DT LH A    +T  + E++     +   E LA +N+ G TAL  AA  G T + +
Sbjct: 14  ARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVK 73

Query: 251 V-MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK-EEDRIELLVAVI 308
           + M + +  L   +   G     +AA  G+ +++  L     E     +  +   L    
Sbjct: 74  ILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAA 133

Query: 309 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR 368
             G  ++   L+     LA     NG+TALH  AR              ++ I    GM 
Sbjct: 134 SQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTV-------IVKKLIEKKAGMV 186

Query: 369 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM 428
             +D                               +K    L  AV+  N E + VL++ 
Sbjct: 187 TRVD-------------------------------KKGQTALHMAVKGQNTEIVDVLMEA 215

Query: 429 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA 488
             +LI   D+   +  HIAV   + +I   + +   + ++     +++    L +A K  
Sbjct: 216 DGSLINSADNKGNTPLHIAVRKNRAEIVQTVLK---YCEVSRVAVNKSGETALDIAEKTG 272

Query: 489 PPDRLKIDSGAALQLRRELHWFKEIEKVVQPS-----YREAKNSEGRTPHILFSEEHR-- 541
             + + +     +Q  R +   K  EKV +PS      +E  +  G   H    +  R  
Sbjct: 273 LHEIVPLLQKIGMQNARSI---KPAEKV-EPSGSSRKLKETVSEIGHEVHTQLEQTGRTR 328

Query: 542 --------RLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD---------ST 584
                   R+ +   + + +  +S  +VA LIATV FAA F VPG   D         S 
Sbjct: 329 REIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSL 388

Query: 585 GRPIFLHYKSFMVFAVSDALALFCS-ATSILMFLSIITSRYAEEDFVHSLPNRLIIGLAT 643
           G         F++F V D+ ALF S A  ++    ++  R A++  + ++ N+L + +A 
Sbjct: 389 GEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMM-AIINKL-MWMAC 446

Query: 644 LFISIATMMAAFAATLFIVLGDDFVWIAIPI-ATGACVPVSLFALLQFPLLSDMI 697
           + IS+     AF +  F+V+G+    +A+ + A GA + VS    + + ++++ I
Sbjct: 447 IMISV-----AFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWVIANRI 496

Arabidopsis thaliana (taxid: 3702)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 158 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISR-NQDTALHIAAGARRTLFVQE 216
           + CF    PLHLAA +GD D  +   +  P    V      ++TALH AA    +  V+ 
Sbjct: 90  KGCF----PLHLAAWRGDVDIVQILIHHGPSHSRVNEQNLEKETALHCAAQYGHSEVVRV 145

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 276
           L+  +T  D ++RN  G T L  AA+ G  ++  +++  +  L S    K  TPL +AA 
Sbjct: 146 LLQELT--DPSMRNSRGETPLDLAALYGRLQVVRMLLTAHPNLMSCNTRK-HTPLHLAAR 202

Query: 277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ---HHPQLAMARDGN 333
            GH   +  L     E D+    + E   A+ +A L+   +D++Q        A  RD  
Sbjct: 203 NGHYATVQVLL----EADMDVNTQTEKGSALHEAALFG-KMDVVQLLLDSGIDANIRDCQ 257

Query: 334 GETALHVLARKPS 346
           G TAL +L   PS
Sbjct: 258 GRTALDILREHPS 270

Danio rerio (taxid: 7955)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 115/531 (21%), Positives = 208/531 (39%), Gaps = 120/531 (22%)

Query: 199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 258
           +TA++I+A        + L+   + E + +R+K    A   AA  G   I + ++    E
Sbjct: 60  ETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPE 119

Query: 259 LPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 318
           L  I      +PL  AA+                     +D +E++ A++D         
Sbjct: 120 LCRICDASNTSPLYAAAV---------------------QDHLEIVNAMLDV-------- 150

Query: 319 LIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHL 378
                P  AM    NG+T+LH   R                  Y +              
Sbjct: 151 ----DPSCAMIVRKNGKTSLHTAGR------------------YGL-------------- 174

Query: 379 QALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDD 438
             L +VK L E+    D + +G   +K    L  AV+  ++E +  ++Q    ++ + D 
Sbjct: 175 --LRIVKALIEK----DAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDR 228

Query: 439 HSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA------PPDR 492
              +  HIA    + +I +L+    A   +  +  +      + LA KL         + 
Sbjct: 229 KGNTALHIATRKARPQITSLLLTFTA---IEVNAINNQKETAMDLADKLQYSESALEINE 285

Query: 493 LKIDSGA-----------ALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHR 541
             +++GA           A  L+R +    +I+  VQ    + + +  R   I  ++E R
Sbjct: 286 ALVEAGAKHGRFIGREDEARALKRAV---SDIKHEVQSQLLQNEKTNRRVSGI--AKELR 340

Query: 542 RLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPG---GNDDSTGRPIFLHYKSFMVF 598
           +L RE    +++T +S  VVA L A++ F A F +PG         G+        F VF
Sbjct: 341 KLHREA---VQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVF 397

Query: 599 AVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAAT 658
            + +A +LF S   +++ ++++      +  V S+ N+L      ++ + A    AF A 
Sbjct: 398 CLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL------MWAACACTFGAFLAI 451

Query: 659 LFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRR 709
            F V+G    W+AI I            LL  P+L   ++ +  Y +F +R
Sbjct: 452 AFAVVGKGNSWMAITI-----------TLLGAPILVGTLASMC-YFVFRQR 490

Arabidopsis thaliana (taxid: 3702)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 16/193 (8%)

Query: 158 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRN-QDTALHIAAGARRTLFVQE 216
           + C+    PLHLAA KGD    R   +  P    V    N  +TALH AA    T  V+ 
Sbjct: 112 KGCY----PLHLAAWKGDAQIVRLLIHQGPSHTRVNEQNNDNETALHCAAQYGHTEVVKV 167

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 276
           L+  +T  D  +RN    T L  AA+ G  ++ ++++N +  L S    K  TPL +AA 
Sbjct: 168 LLEELT--DPTMRNNKFETPLDLAALYGRLEVVKMLLNAHPNLLSC-NTKKHTPLHLAAR 224

Query: 277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY---DVALDLIQHHPQLAMARDGN 333
            GHK ++  L     + + +     E+  A+ +A L+   DV   L+     + + +D +
Sbjct: 225 NGHKAVVQVLLDAGMDSNYQ----TEMGSALHEAALFGKTDVVQILLAAGTDVNI-KDNH 279

Query: 334 GETALHVLARKPS 346
           G TAL  +   PS
Sbjct: 280 GLTALDTVRELPS 292

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ-DTALHIAAGARRTLFVQELVNLMT 222
           Y P+HLAA KGD +  +   +  P    V    N+ +TALH AA    +  V  L+  +T
Sbjct: 93  YFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELT 152

Query: 223 PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM 282
             D  +RN    T L  AA+ G  ++ +++++ +  L S    K  TPL +AA  GHK +
Sbjct: 153 --DPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRK-HTPLHLAARNGHKAV 209

Query: 283 IWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 342
           +  L     +   + E    L  A +  G  DV   L++     A  +D  G T L +L 
Sbjct: 210 VQVLLEAGMDVSCQTEKGSALHEAAL-FGKVDVVRVLLETGID-ANIKDSLGRTVLDILK 267

Query: 343 RKPS 346
             PS
Sbjct: 268 EHPS 271

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ-DTALHIAAGARRTLFVQELVNLMT 222
           Y P+HLAA KGD +  +   +  P    V    N+ +TALH AA    +  V  L+  +T
Sbjct: 93  YFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELT 152

Query: 223 PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM 282
             D  +RN    T L  AA+ G  ++ +++++ +  L S    K  TPL +AA  GHK +
Sbjct: 153 --DPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRK-HTPLHLAARNGHKAV 209

Query: 283 IWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 342
           +  L     +   + E    L  A +  G  DV   L++     A  +D  G T L +L 
Sbjct: 210 VQVLLEAGMDVSCQTEKGSALHEAAL-FGKVDVVRVLLETGID-ANIKDSLGRTVLDILK 267

Query: 343 RKPS 346
             PS
Sbjct: 268 EHPS 271

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ-DTALHIAAGARRTLFVQELVNLMT 222
           Y P+HLAA KGD +  +   +  P    V    N+ +TALH AA    +  V  L+  +T
Sbjct: 93  YFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELT 152

Query: 223 PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM 282
             D  +RN    T L  AA+ G  ++ +++++ +  L S    K  TPL +AA  GHK +
Sbjct: 153 --DPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRK-HTPLHLAARNGHKAV 209

Query: 283 IWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 342
           +  L     +   + E    L  A +  G  DV   L++     A  +D  G T L +L 
Sbjct: 210 VQVLLEAGMDVSCQTEKGSALHEAAL-FGKVDVVRVLLETGID-ANIKDSLGRTVLDILK 267

Query: 343 RKPS 346
             PS
Sbjct: 268 EHPS 271

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 26/179 (14%)

Query: 172 LKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK 231
           L+   D+ +N  ++N   +C   ++N   ALH+A+       V EL+      D A   K
Sbjct: 54  LEKALDYIKNGVDIN---IC---NQNGLNALHLASKEGHVEVVSELLQREANVDAA--TK 105

Query: 232 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK 291
            GNTAL  A+++G  ++ +V+V     + + +   G TPL MAA   H E++ +L     
Sbjct: 106 KGNTALHIASLAGQAEVVKVLVTNGANV-NAQSQNGFTPLYMAAQENHLEVVKFLLDNGA 164

Query: 292 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ---LAMARDGNGET---ALHVLARK 344
            + L  ED           G   +A+ L Q H Q   L +  D  G+    ALH+ ARK
Sbjct: 165 SQSLATED-----------GFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARK 212

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 26/179 (14%)

Query: 172 LKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK 231
           L+   D+ +N  ++N   +C   ++N   ALH+A+       V EL+      D A   K
Sbjct: 37  LEKALDYIKNGVDVN---IC---NQNGLNALHLASKEGHVEVVSELLQREANVDAA--TK 88

Query: 232 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK 291
            GNTAL  A+++G  ++ +V+V     + + +   G TPL MAA   H E++ +L     
Sbjct: 89  KGNTALHIASLAGQAEVVKVLVTNGANV-NAQSQNGFTPLYMAAQENHLEVVRFLLDNGA 147

Query: 292 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ---LAMARDGNGET---ALHVLARK 344
            + L  ED           G   +A+ L Q H Q   L +  D  G+    ALH+ ARK
Sbjct: 148 SQSLATED-----------GFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARK 195

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	715
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.960	0.870	0.634	0.0
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.969	0.408	0.591	0.0
297737987	1855	unnamed protein product [Vitis vinifera]	0.924	0.356	0.601	0.0
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.861	0.808	0.648	0.0
224136692	743	predicted protein [Populus trichocarpa]	0.791	0.761	0.641	0.0
356532648	739	PREDICTED: uncharacterized protein LOC10	0.762	0.737	0.609	0.0
297740805	702	unnamed protein product [Vitis vinifera]	0.787	0.801	0.574	0.0
147860696	891	hypothetical protein VITISV_011174 [Viti	0.759	0.609	0.546	1e-174
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.720	0.914	0.528	1e-164
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.769	0.913	0.542	1e-162

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/723 (63%), Positives = 547/723 (75%), Gaps = 36/723 (4%)

Query: 11  SRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVST--GVCSDDDI-----SLKDAFGPGFF 63
           SR    LS+ +CFPE++S   S CKS  +D+ S+  G  S DDI     +  D    G  
Sbjct: 9   SRLKRSLSLQSCFPEVRSAEASGCKS-PDDNASSVNGGRSFDDIRHNVDTCLDIDDQGIS 67

Query: 64  YHANYGPSSNGA---------------SGNQNSHLQPPQAISSSIDFFEARGPDAHVVLD 108
             ++ G +S  +               S  QNS  +  QA+       EA G DAHV LD
Sbjct: 68  PASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVP------EAIGSDAHVALD 121

Query: 109 PSIWPMYASSDQVPSTSAELS--RAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAP 166
            S WP  ++  +  ++ ++ S  R A D S     P  S+   GA+SG +  N   +Y  
Sbjct: 122 LSSWPGGSTHPKNETSKSDASPVRQAVDHSF----PLASVHYSGAISGEIRSNGLKAYVL 177

Query: 167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 226
           L LAAL GDW  A+ F   NP+AV  RI+R  +TALHIAAGAR T FV+ELV LM P+DL
Sbjct: 178 LCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDL 237

Query: 227 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
           AL+NKVGNTALCFAA SG+T+IAEVMVNKNRELP IRG+KG TPL MAAL+GHK+M+ YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 287 YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 346
           YSVT+E++L +EDRI LLVA I A L+DVAL ++   P+LAMARDGNG+TALHVLARKP 
Sbjct: 298 YSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARKPL 357

Query: 347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD-DSKIGELLRK 405
           AF SGSQLG W RCIYS PG +++ D KLMH+QALELV++LW+++L LD D KIGEL+R 
Sbjct: 358 AFYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRT 417

Query: 406 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 465
           PSRLLFTA ELG VEF+ VLI+ YP+LIWKV+D S+++FH+AV HRQEKIFNLIYE+GAH
Sbjct: 418 PSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAH 477

Query: 466 KDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 525
           KD IA+YKDE NNNMLHLAGKLAP +RLKIDSGAA QL+RELHWFKE+EK++QPSY E K
Sbjct: 478 KDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMK 537

Query: 526 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTG 585
           N +GRTP ILF+EEH+ LVREGEKWMKDTASSCMVVATLIATVMFAAAF+VPGGNDD TG
Sbjct: 538 NEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTG 597

Query: 586 RPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLF 645
           RPIFL  KSF+VFA+SDALALF SATSIL+FLSI+TSRYAEEDF+ SLPNRLIIGLATLF
Sbjct: 598 RPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLF 657

Query: 646 ISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSI 705
           IS+ATMM AF ATLFIVLG + VW+A P+A  ACVPV+LF LL+FPL  DMISH Y+ SI
Sbjct: 658 ISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSI 717

Query: 706 FTR 708
             R
Sbjct: 718 IFR 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/768 (59%), Positives = 550/768 (71%), Gaps = 75/768 (9%)

Query: 11  SRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVST--GVCSDDDI-----SLKDAFGPGFF 63
           SR    LS+ +CFPE++S   S CKS  +D+ S+  G  S DDI     +  D    G  
Sbjct: 9   SRLKRSLSLQSCFPEVRSAEASGCKS-PDDNASSVNGGRSFDDIRHNVDTCLDIDDQGIS 67

Query: 64  YHANYGPSSNGA---------------SGNQNSHLQPPQAISSSIDFFEARGPDAHVVLD 108
             ++ G +S  +               S  QNS  +  QA+       EA G DAHV LD
Sbjct: 68  PASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVP------EAIGSDAHVALD 121

Query: 109 PSIWPMYASSDQVPSTSAELS--RAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAP 166
            S WP  ++  +  ++ ++ S  R A D S     P  S+   GA+SG +  N   +Y  
Sbjct: 122 LSSWPGGSTHPKNETSKSDASPVRQAVDHSF----PLASVHYSGAISGEIRSNGLKAYVL 177

Query: 167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 226
           L LAAL GDW  A+ F   NP+AV  RI+R  +TALHIAAGAR T FV+ELV LM P+DL
Sbjct: 178 LCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDL 237

Query: 227 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
           AL+NKVGNTALCFAA SG+T+IAEVMVNKNRELP IRG+KG TPL MAAL+GHK+M+ YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 287 YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 346
           YSVT+E++L +EDRI LLVA I A L+DVAL ++   P+LAMARDGNG+TALHVLARKP 
Sbjct: 298 YSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARKPL 357

Query: 347 AFASGS--QLGFW----------RRCI---------------------------YSVPGM 367
           AF SG   Q G +          R C+                           ++VPG 
Sbjct: 358 AFYSGRARQRGVFLLYSATKGEVRLCLNVIRSLCSASTHVFYXFNSQTYFGLLPHAVPGF 417

Query: 368 RAILDPKLMHLQALELVKRLWEQVLLLD-DSKIGELLRKPSRLLFTAVELGNVEFLMVLI 426
           +++ D KLMH+QALELV++LW+++L LD D KIGEL+R PSRLLFTA ELG VEF+ VLI
Sbjct: 418 KSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLI 477

Query: 427 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK 486
           + YP+LIWKV+D S+++FH+AV HRQEKIFNLIYE+GAHKD IA+YKDE NNNMLHLAGK
Sbjct: 478 RSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGK 537

Query: 487 LAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVRE 546
           LAP +RLKIDSGAA QL+RELHWFKE+EK++QPSY E KN +GRTP ILF+EEH+ LVRE
Sbjct: 538 LAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVRE 597

Query: 547 GEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALAL 606
           GEKWMKDTASSCMVVATLIATVMFAAAF+VPGGNDD TGRPIFL  KSF+VFA+SDALAL
Sbjct: 598 GEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALAL 657

Query: 607 FCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDD 666
           F SATSIL+FLSI+TSRYAEEDF+ SLPNRLIIGLATLFIS+ATMM AF ATLFIVLG +
Sbjct: 658 FSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPE 717

Query: 667 FVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLL 714
            VW+A P+A  ACVPV+LF LL+FPL  DMISH Y+ SI  R +++ +
Sbjct: 718 LVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFRPTHNFI 765

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/723 (60%), Positives = 525/723 (72%), Gaps = 62/723 (8%)

Query: 11  SRYGNGLSIDTCFPEIKSVTNSSCKSFGEDDVST--GVCSDDDI-----SLKDAFGPGFF 63
           SR    LS+ +CFPE++S   S CKS  +D+ S+  G  S DDI     +  D    G  
Sbjct: 9   SRLKRSLSLQSCFPEVRSAEASGCKS-PDDNASSVNGGRSFDDIRHNVDTCLDIDDQGIS 67

Query: 64  YHANYGPSSNGA---------------SGNQNSHLQPPQAISSSIDFFEARGPDAHVVLD 108
             ++ G +S  +               S  QNS  +  QA+       EA G DAHV LD
Sbjct: 68  PASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVP------EAIGSDAHVALD 121

Query: 109 PSIWPMYASSDQVPSTSAELS--RAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAP 166
            S WP  ++  +  ++ ++ S  R A D S     P  S+   GA+SG +  N   +Y  
Sbjct: 122 LSSWPGGSTHPKNETSKSDASPVRQAVDHSF----PLASVHYSGAISGEIRSNGLKAYVL 177

Query: 167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 226
           L LAAL GDW  A+ F   NP+AV  RI+R  +TALHIAAGAR T FV+ELV LM P+DL
Sbjct: 178 LCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDL 237

Query: 227 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
           AL+NKVGNTALCFAA SG+T+IAEVMVNKNRELP IRG+KG TPL MAAL+GHK+M+ YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 287 YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 346
           YSVT+E++L +EDRI LLVA I A L+DVAL ++   P+LAMARDG    ++HV      
Sbjct: 298 YSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDG---ASIHV------ 348

Query: 347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD-DSKIGELLRK 405
                            +PG +++ D KLMH+QALELV++LW+++L LD D KIGEL+R 
Sbjct: 349 -----------------IPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRT 391

Query: 406 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 465
           PSRLLFTA ELG VEF+ VLI+ YP+LIWKV+D S+++FH+AV HRQEKIFNLIYE+GAH
Sbjct: 392 PSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAH 451

Query: 466 KDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 525
           KD IA+YKDE NNNMLHLAGKLAP +RLKIDSGAA QL+RELHWFKE+EK++QPSY E K
Sbjct: 452 KDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMK 511

Query: 526 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTG 585
           N +GRTP ILF+EEH+ LVREGEKWMKDTASSCMVVATLIATVMFAAAF+VPGGNDD TG
Sbjct: 512 NEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTG 571

Query: 586 RPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLF 645
           RPIFL  KSF+VFA+SDALALF SATSIL+FLSI+TSRYAEEDF+ SLPNRLIIGLATLF
Sbjct: 572 RPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLF 631

Query: 646 ISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSI 705
           IS+ATMM AF ATLFIVLG + VW+A P+A  ACVPV+LF LL+FPL  DMISH Y+ SI
Sbjct: 632 ISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSI 691

Query: 706 FTR 708
             R
Sbjct: 692 IFR 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/638 (64%), Positives = 490/638 (76%), Gaps = 22/638 (3%)

Query: 86  PQAISSSIDF-FEARGPDAHVVLD-PSIWPMYASSDQVPSTSAELSRAAADESSGFAQPA 143
           P+A SS+  F F+   PD  VV+D P+ +  Y S+  VP+    +S    DE    + P 
Sbjct: 139 PEAASSNQHFTFQ---PD--VVIDIPTAYGYYISN--VPNERPGVSNQGRDEYG--SSPL 189

Query: 144 VSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALH 203
            +    G VS G     F +YAPL+LAAL GDWD A   F  + +AV  RI+R Q+T LH
Sbjct: 190 AAAVHSGEVSSG-----FRTYAPLYLAALSGDWDVAERIFESDHQAVRARITRAQETPLH 244

Query: 204 IAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR 263
           IAAGAR   FV+ LV +MTP DLALRNKVGNTALCFAAVSGVTKIAEVMVNKN  LP IR
Sbjct: 245 IAAGARHLTFVENLVRMMTPADLALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIR 304

Query: 264 GNKGATPLCMAALLGHKEMIWYLYS------VTKEEDLKEEDRIELLVAVIDAGLYDVAL 317
           G++GATPL MA LLGH+EM+WYLY+      +T    L +ED   LL+A I + L+DVAL
Sbjct: 305 GSEGATPLHMATLLGHREMVWYLYNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVAL 364

Query: 318 DLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMH 377
            ++Q HP++A AR  NGETALH+LARKPSA+ SGSQLGF +RCIY+ P ++ + D KLMH
Sbjct: 365 KIVQKHPKIATARGRNGETALHILARKPSAYQSGSQLGFLQRCIYAFPFIKVVYDQKLMH 424

Query: 378 LQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD 437
           +QALELVK LW +VLL+++ ++GEL+R PSRLLFTA ELG VEFL+ LI  YP+LIWKVD
Sbjct: 425 IQALELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVD 484

Query: 438 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDS 497
             SRS+FHIAVVHRQEK+FNLI+E+GA KDLIASY+DENNNNMLHLAGKLAP DRLK DS
Sbjct: 485 TQSRSIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDS 544

Query: 498 GAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASS 557
           GAALQLRRELHWFKE+EK+VQP YRE +NSEG+TP  LF EEH+ LVREGEKWMKDTA+S
Sbjct: 545 GAALQLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAAS 604

Query: 558 CMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFL 617
           CM+VATLIATVMFAA FTVPGG++ +TG PIFL  +SF VFAVSDAL+   SA SILMFL
Sbjct: 605 CMLVATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFL 664

Query: 618 SIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATG 677
           SI+TSRYAEEDF+HSLPNRL IGL TLFIS+ATMM AF ATLF+VLG       IPIA  
Sbjct: 665 SILTSRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLGHGLHQAKIPIALV 724

Query: 678 ACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY 715
           AC+PVSLFALLQFPL +DM+S  Y   +F   S HLL+
Sbjct: 725 ACIPVSLFALLQFPLFADMVSCTYGSRMFFGPSRHLLH 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/566 (64%), Positives = 434/566 (76%)

Query: 150 GAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR 209
           G V G       T YAPL+ AA+KGDW+ A  FF  +P A+ VRI++  DT LHIAAGA+
Sbjct: 178 GLVKGNRSTTGLTLYAPLYQAAMKGDWEKADEFFKSHPGAINVRITKEMDTVLHIAAGAK 237

Query: 210 RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT 269
            T FV+E+V  MT  DL LRNK  NTALC+AA SGVTKIAE+MV+KNR LP +R N+G T
Sbjct: 238 HTKFVEEVVKSMTGTDLTLRNKYNNTALCYAAASGVTKIAEMMVSKNRNLPMMRNNRGVT 297

Query: 270 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMA 329
           PL +AAL GHK+M+WYLYSVT +E L  +D I LL+A I   L+DVAL +IQH P+LA+ 
Sbjct: 298 PLYIAALFGHKDMVWYLYSVTSDEYLTRDDYIGLLIATISTDLFDVALSIIQHQPELAIQ 357

Query: 330 RDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 389
           RD NGETALHVLARK SAFAS S LGFW R IY  PG++A+ D KLMH Q LELVK  WE
Sbjct: 358 RDLNGETALHVLARKSSAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWE 417

Query: 390 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV 449
           QVLLLDD +I ELL  PS+ LF A E G VEF+  LI+ YP+LIWKV++ SRS+FHIAV 
Sbjct: 418 QVLLLDDCQIAELLASPSQPLFVAAEFGIVEFITALIRSYPDLIWKVNEQSRSIFHIAVA 477

Query: 450 HRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHW 509
           HRQEKIF+LI ++GAHKD+I +YKD NN N+LHLAG +AP D+L + SGAALQ++REL W
Sbjct: 478 HRQEKIFSLINDIGAHKDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQRELLW 537

Query: 510 FKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVM 569
           FKE+EK VQPS +E ++  GRTP +LF+EEHR LV+EGEKWMK+TASSCM++ATLI TVM
Sbjct: 538 FKEVEKNVQPSLKEMRDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVM 597

Query: 570 FAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDF 629
           FAA FTVPGGND+S G P+ L   SF+VFAV+DA ALF S TSILMFLSI+TSRYAEEDF
Sbjct: 598 FAAIFTVPGGNDNSKGTPLVLASTSFIVFAVADAFALFSSVTSILMFLSILTSRYAEEDF 657

Query: 630 VHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQ 689
           V SLP RL++GLATLF SIA M+ AFAAT  IVL     WI +PI+ G+ VPV+LFA LQ
Sbjct: 658 VESLPKRLVVGLATLFCSIAAMLVAFAATFCIVLDHRLAWIVVPISLGSSVPVTLFAFLQ 717

Query: 690 FPLLSDMISHLYKYSIFTRRSNHLLY 715
           FPL  DMI   Y   IF R+S  +LY
Sbjct: 718 FPLFVDMIHSSYGAGIFARKSTDMLY 743

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/546 (60%), Positives = 419/546 (76%), Gaps = 1/546 (0%)

Query: 164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 223
           Y PL+ A+LKGDW+ A  F NL+P A    ISR  +TALHI+AGARRT FV+ELV  M  
Sbjct: 194 YLPLYRASLKGDWEKANEFLNLHPGAENAMISRGWETALHISAGARRTKFVEELVKRMRT 253

Query: 224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
            DL ++NK  NTALCFAA SGVTKIA++MV++NR LP IRG++G TPL +A LLG ++M+
Sbjct: 254 TDLEIQNKDNNTALCFAAASGVTKIAKLMVDRNRNLPVIRGSEGVTPLYIATLLGQRDMV 313

Query: 284 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 343
           WYLYSVT  E LK ED   LL+A I   LYD AL +++  PQLA     NGETALHVLA+
Sbjct: 314 WYLYSVTNHEILKTEDYFSLLIAAISTDLYDFALHVLECQPQLATYHGLNGETALHVLAK 373

Query: 344 KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL 403
           KPS+F SG QLG W RCIY +PG  A+   K ++ QAL+LV+RLWE ++  D+ + G+L+
Sbjct: 374 KPSSFTSGIQLGIWERCIYPLPGFEAVQKKKTLNAQALKLVQRLWELIVSSDEIQHGDLI 433

Query: 404 RKP-SRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL 462
           + P SR LF A E G  E ++ L+  YP+L+WKVD  +RS+FHIA++HRQEKIFNLIY++
Sbjct: 434 KSPLSRPLFIAAESGIPEIVIELLYSYPDLLWKVDGQNRSLFHIAIMHRQEKIFNLIYDI 493

Query: 463 GAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYR 522
           GAHKDLI SY+D NN+N+LHLAGKLAP ++L + SGAALQ++REL WFKE+EK++QP ++
Sbjct: 494 GAHKDLITSYRDNNNHNILHLAGKLAPSEQLHVVSGAALQMQRELLWFKEVEKIIQPLFK 553

Query: 523 EAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD 582
           E K+S+GRTP +LF+EEH+ L +EGEKW+K+TASSCM+VATLI TVMFAA FTVPGGN++
Sbjct: 554 EIKDSQGRTPQMLFTEEHKELAKEGEKWLKNTASSCMLVATLITTVMFAAIFTVPGGNNN 613

Query: 583 STGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLA 642
           + G PIF+H  SF VFA+SDALALF S  S+LMFLSI+TSRYA+EDF+ SLP RL +G+A
Sbjct: 614 NNGYPIFMHTTSFKVFALSDALALFSSVISVLMFLSILTSRYAQEDFLVSLPRRLSVGIA 673

Query: 643 TLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYK 702
           TLF SI TM+ AF AT FIVLG    WI IP    AC+P  LFALLQFPLL D IS  Y 
Sbjct: 674 TLFFSIITMLIAFGATFFIVLGHQLAWIVIPTTLVACIPAILFALLQFPLLVDTISCTYG 733

Query: 703 YSIFTR 708
             +F+R
Sbjct: 734 AGVFSR 739

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740805|emb|CBI30987.3| unnamed protein product [Vitis vinifera]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/647 (57%), Positives = 444/647 (68%), Gaps = 84/647 (12%)

Query: 86  PQAISSSIDF-FEARGPDAHVVLD-PSIWPMYASSDQVPSTSAELSRAAADESSGFAQPA 143
           P+A SS+  F F+   PD  VV+D P+ +  Y S+  VP+    +S    DE    + P 
Sbjct: 96  PEAASSNQHFTFQ---PD--VVIDIPTAYGYYISN--VPNERPGVSNQGRDEYG--SSPL 146

Query: 144 VSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALH 203
            +    G VS G     F +YAPL+LAAL GDWD A   F  + +AV  RI+R Q+T LH
Sbjct: 147 AAAVHSGEVSSG-----FRTYAPLYLAALSGDWDVAERIFESDHQAVRARITRAQETPLH 201

Query: 204 IAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR 263
           IAAGAR   FV+ LV +MTP DLALRNKVGNTAL                          
Sbjct: 202 IAAGARHLTFVENLVRMMTPADLALRNKVGNTAL-------------------------- 235

Query: 264 GNKGATPLCMAALLGHKEMIWYLYSVTK--EEDLKEEDRIELLVAVIDAGLYDVALDLIQ 321
                   C AA+ G          VTK  E  + + +R+ L+         +VAL ++Q
Sbjct: 236 --------CFAAVSG----------VTKIAEVMVNKNNRLPLIRG-------NVALKIVQ 270

Query: 322 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYS---------------VPG 366
            HP++A AR  NGETALH+LARKPSA+ SGSQLGF +RCIY+               VP 
Sbjct: 271 KHPKIATARGRNGETALHILARKPSAYQSGSQLGFLQRCIYACLHVELSGNSSVIHKVPF 330

Query: 367 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI 426
           ++ + D KLMH+QALELVK LW +VLL+++ ++GEL+R PSRLLFTA ELG VEFL+ LI
Sbjct: 331 IKVVYDQKLMHIQALELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVEFLIELI 390

Query: 427 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK 486
             YP+LIWKVD  SRS+FHIAVVHRQEK+FNLI+E+GA KDLIASY+DENNNNMLHLAGK
Sbjct: 391 HAYPDLIWKVDTQSRSIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLAGK 450

Query: 487 LAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVRE 546
           LAP DRLK DSGAALQLRRELHWFKE+EK+VQP YRE +NSEG+TP  LF EEH+ LVRE
Sbjct: 451 LAPSDRLKTDSGAALQLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLVRE 510

Query: 547 GEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALAL 606
           GEKWMKDTA+SCM+VATLIATVMFAA FTVPGG++ +TG PIFL  +SF VFAVSDAL+ 
Sbjct: 511 GEKWMKDTAASCMLVATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDALSF 570

Query: 607 FCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDD 666
             SA SILMFLSI+TSRYAEEDF+HSLPNRL IGL TLFIS+ATMM AF ATLF+VLG  
Sbjct: 571 VSSAASILMFLSILTSRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLGHG 630

Query: 667 FVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHL 713
                IPIA  AC+PVSLFALLQFPL +DM+S  Y   +F   S H 
Sbjct: 631 LHQAKIPIALVACIPVSLFALLQFPLFADMVSCTYGSRMFFGPSRHF 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 309/565 (54%), Positives = 394/565 (69%), Gaps = 22/565 (3%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
           PL+ AALKGDW+ A+  F ++P AV VRI+RN DT LHIAA A+RT FV+E+V LM P D
Sbjct: 331 PLYQAALKGDWETAKGIFEIHPTAVRVRITRNLDTVLHIAAAAKRTHFVEEVVGLMDPND 390

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
           L L+N+  NTA CFAA +G  +IAEVMV KN  LP IRGN+   PL MAALLGH EM+WY
Sbjct: 391 LELQNENSNTAFCFAAAAGTVRIAEVMVKKNDHLPMIRGNQQMMPLHMAALLGHSEMVWY 450

Query: 286 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 345
           LY+ T  +DLK+ED I +L   I   LY+VAL +++ HP+LA  RDGN ETALH+LARKP
Sbjct: 451 LYNKTNHQDLKDEDWIGILNTCISTDLYEVALAILESHPKLATIRDGNYETALHLLARKP 510

Query: 346 SAFASGSQLGFWRRCI----------------YSVPGMRAILDPKLMHLQALELVKRLWE 389
           SAF+  S++G W   I                  +P    + + +    + L        
Sbjct: 511 SAFSGESRIGIWTTFINPRSPLQVSTVVIIFLMVIPSNNFLFNSQFQS-KPLNSSNAFGS 569

Query: 390 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV 449
           ++    DSKI +L+R P RL+F A +LGN  FL  L+  YP+LIW+V   +RS+FHIA +
Sbjct: 570 RLYNYLDSKIADLIRDPYRLVFVAAKLGNTIFLTELLHSYPDLIWRVXSQTRSIFHIAAL 629

Query: 450 HRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHW 509
           HRQ++IFNLIYE+G+ KD+I +Y+DEN NNMLHL GKLA P  L I SGAALQ++REL W
Sbjct: 630 HRQDRIFNLIYEIGSIKDMIMTYRDENGNNMLHLVGKLAHPSELNIISGAALQMQRELLW 689

Query: 510 FKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVM 569
           FKE+EK++QP+YRE KN +G+TP +LF+EEHR L+++GEKWM++TA+  M+VATLIATV+
Sbjct: 690 FKEVEKLMQPTYREKKNRQGKTPWVLFTEEHRDLMKDGEKWMRETAAQSMLVATLIATVV 749

Query: 570 FAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDF 629
           F+AAFTVPGG+   T  PI L     MVFAVSD LALF S+TSILMFLSI+TSRYAE+DF
Sbjct: 750 FSAAFTVPGGHSQQTDTPILL-----MVFAVSDGLALFTSSTSILMFLSILTSRYAEQDF 804

Query: 630 VHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQ 689
           +HSLP+RL+ GL  LF+SI TMM  F  T FIV    F W+ I IA  A  PVSLFA LQ
Sbjct: 805 LHSLPSRLMFGLTALFVSIITMMVTFTITFFIVYHHGFAWVPILIALFATGPVSLFASLQ 864

Query: 690 FPLLSDMISHLYKYSIFTRRSNHLL 714
           +PLL+D+I+  Y          H+ 
Sbjct: 865 YPLLADVINSTYGSRFLFEPRKHMF 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 296/560 (52%), Positives = 375/560 (66%), Gaps = 45/560 (8%)

Query: 157 ERNCF-TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
           ER  + T   PL+ AA+KGDW  A   F + P AV + I++ +DT LHIAA A+   FV+
Sbjct: 48  ERYLYLTVCIPLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVE 107

Query: 216 ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 275
           E+V +M P+DL L+NK  NTALCFAA SG+ +IAEVMV KN  LP I+G  G  PL MAA
Sbjct: 108 EMVKMMEPKDLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAA 167

Query: 276 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE 335
           LLGH EM+ YLY+ T  E L   D + LL   I   LYDVALD++ HHP LA+ RD N E
Sbjct: 168 LLGHSEMVRYLYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDENDE 227

Query: 336 TALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD 395
           TALH+LARKPSAF+ G QL  W   I                                  
Sbjct: 228 TALHLLARKPSAFSGGDQLHMWNTFI---------------------------------- 253

Query: 396 DSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI 455
                      S LL  A ELGN  FL  L+  YP+LIW+ D+ +R++FHIAV+HR+E I
Sbjct: 254 ----------TSPLLLVAAELGNTVFLTELVGSYPDLIWEADNDNRTIFHIAVLHRRESI 303

Query: 456 FNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEK 515
           FNLIYE+G+ KDLI  YKD+N+NNMLHLAG+ AP  +  I SGAALQ++REL WFKE+EK
Sbjct: 304 FNLIYEIGSMKDLIVPYKDDNDNNMLHLAGRKAPLPQRNIVSGAALQMQRELLWFKEVEK 363

Query: 516 VVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFT 575
           ++ P+YRE KN +G+TP  LF++EH+ L+++GEKWM+ TA+  M+VATLIATV+FAAAFT
Sbjct: 364 IMLPTYRERKNKDGKTPRDLFTKEHKNLMKDGEKWMRGTAAQSMLVATLIATVVFAAAFT 423

Query: 576 VPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPN 635
           VPGG++  TG PI L  KSFM+FAVSDA+ALF S+TSIL+FLSI+TSRYAE+DF+ SLP+
Sbjct: 424 VPGGSNQDTGIPILLRKKSFMIFAVSDAIALFSSSTSILVFLSILTSRYAEDDFLESLPS 483

Query: 636 RLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSD 695
           RL+ GL TLF+SI +MM  F  T F+V G  F W  + IA  ACVPV+L+  LQ+PLL+D
Sbjct: 484 RLMFGLITLFVSIISMMVTFTITFFLVFGHGFAWAPMLIAVSACVPVTLYFSLQYPLLAD 543

Query: 696 MISHLYKYSIFTRRSNHLLY 715
           +    Y      R S  +LY
Sbjct: 544 IFRSTYGSRFLFRPSKRMLY 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/551 (54%), Positives = 385/551 (69%), Gaps = 1/551 (0%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
           PL+ AA+KGDW  A+  F + P AV   I+   DT LHIAA A+   FV+E+V +M PED
Sbjct: 52  PLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPED 111

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
           L L+N+  NTA  FAA +G+  IA+ MV KN  LP IR     TPL +AALLGH EM+WY
Sbjct: 112 LELKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVWY 171

Query: 286 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 345
           LY+ T  E L   D ++LL A I   LYDVALD+  HHP LA+ RDGNGETALH+LARKP
Sbjct: 172 LYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHLLARKP 231

Query: 346 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 405
           SAF+ G QL  W   I S+   R      L   ++L+LVK LW+QV++   S+I +L+R 
Sbjct: 232 SAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEILDLIRS 291

Query: 406 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 465
           PS LL  A ELGN  FL  LI +YP+LIW+VDDH+RS+FHIAV+HRQE IFNLIYE+G+ 
Sbjct: 292 PSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEIGSM 351

Query: 466 KDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 525
           KDLI   KDEN+NN+LHLAG+LAPP +  I  GAALQ++REL WF+E+EK+V PS+RE K
Sbjct: 352 KDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRERK 411

Query: 526 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTG 585
           N +G TP  LF++EH+ L++EGEKWM+ TA+  M+VATLIATV+FAAA TVPGG++  TG
Sbjct: 412 NRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTG 471

Query: 586 RPIFLHYKSFMVFAVSDALALFCSATSILMFLSII-TSRYAEEDFVHSLPNRLIIGLATL 644
            P F+  +   +FAVSDA+ALF S TSIL+FLSI+ TSRYA++DF+  LP+RL+ GL TL
Sbjct: 472 IPXFVEKEILHIFAVSDAIALFTSLTSILVFLSIVLTSRYADDDFLELLPSRLMFGLFTL 531

Query: 645 FISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYS 704
           FISI +MM  F AT F++      W  I +A  A + V+L+  +Q  L + +I   Y   
Sbjct: 532 FISIISMMVTFTATFFLLFSHGVTWAPILVAVFAFLLVTLYFSMQCRLWAHIIRATYCSR 591

Query: 705 IFTRRSNHLLY 715
           +  R   H+LY
Sbjct: 592 LIFRPRKHMLY 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	715
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.475	0.508	0.440	4.4e-90
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.763	0.873	0.381	6e-87
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.482	0.572	0.396	8.6e-73
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.468	0.965	0.446	4.1e-72
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.651	0.811	0.361	4.9e-69
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.205	0.521	0.455	2.1e-28
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.283	0.299	0.290	4.2e-14
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.672	0.815	0.244	1.6e-13
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.583	0.686	0.243	4.5e-13
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.591	0.674	0.249	4.8e-13

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 152/345 (44%), Positives = 213/345 (61%)

Query:   366 GMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL 425
             G+  +   K+MHLQA +L+  + E+ L L   +  E + +   LLF AV  GNV+FL+ +
Sbjct:   322 GIDEVYRLKVMHLQAKKLLLGISEETLALGLKERSETVDEA--LLF-AVRYGNVDFLVEM 378

Query:   426 IQMYPNLIWKVDDHSRS-MFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 484
             I+    L+W     S S +F +AV  RQEK+F+L+Y L   K L+ + KD + N +LHLA
Sbjct:   379 IRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLA 438

Query:   485 GKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLV 544
             G  +PP +L    GA LQL+REL WFKE+E++     +E  N+E +TP  +F++EH+ L 
Sbjct:   439 GFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLR 498

Query:   545 REGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD-STGRPIFLHYKSFMVFAVSDA 603
             +E EKWMKDTA SC +VA LI TV FAA FTVPGG DD S G+P  L  + F++F VSD 
Sbjct:   499 QEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDL 558

Query:   604 LALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVL 663
             ++ F S TS+L+FL I+T+RY+ +DF+  LP ++I GL+ L              LF ++
Sbjct:   559 ISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMM 618

Query:   664 GDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTR 708
             G +  WI  P    AC+P  LF LLQ+PLL +MI   Y   IF R
Sbjct:   619 GKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYGKGIFDR 663

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 215/563 (38%), Positives = 310/563 (55%)

Query:   159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV 218
             N +  Y  L+    +G  +  ++F N  P+AV   I+  +   L   A     + V+ L+
Sbjct:    71 NEYYEYIQLNQGISQGRVEAVKDFLNRRPDAVDKYINPYETPLLKACAYGNPEI-VKLLL 129

Query:   219 NLMTPEDLALR---NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 275
               MTPE +  +   N   NT L   AVSG  +IAE +V KN +L  I GN G  P+ +A 
Sbjct:   130 RRMTPEQMLPKMSQNNFYNTPLTVVAVSGNMEIAEALVAKNPKLLEIPGNNGEIPVVVAV 189

Query:   276 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY---DVALDLIQHHPQLAMARDG 332
                  EM  YLY+ T  + L E+D    ++  ++A  Y   D+ALDL     +LA+ +  
Sbjct:   190 ENTQMEMARYLYNRTPVQVLLEKDGFHGILLFLNAIYYKKLDMALDLFNKSRRLAVTKHL 249

Query:   333 NGETA-LHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV 391
               E+  + VLA KP  F   + +G   +C+    G+  +   K+MHLQA +L+K + E+ 
Sbjct:   250 RIESVPIIVLASKPDLFPD-TLMGKVLKCLSKCIGIDEVYRLKVMHLQAKKLLKGISEET 308

Query:   392 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR 451
             L L   +  E + +   LLF AV  GNV+FL+ +I+    L+W     + ++F+ AV  R
Sbjct:   309 LALGLKERSESVDEA--LLF-AVRYGNVDFLVEMIKNNSELLWSTG--TSTLFNTAVQVR 363

Query:   452 QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFK 511
             QEK+F+L+Y LG  K L  + KD + N++LHLAG   P  +L     A LQ++REL WFK
Sbjct:   364 QEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFK 423

Query:   512 EIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFA 571
             E+E++V     E  N+E  TP  +F +EH  +  E EKWMKDTA SC +VA LI TV FA
Sbjct:   424 EMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFA 483

Query:   572 AAFTVPGGNDDSTG-RPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFV 630
             A FTVPGG DD++G RP   H + F++F VSD ++ F + TS+L+FL I+T+RYA +DF+
Sbjct:   484 AIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFL 543

Query:   631 HSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVLGDDFVWIAIPIATGACVPVSLFALLQF 690
              SLP  +I GL+TL              LF +  D   WI  P    AC P  LF ++Q+
Sbjct:   544 FSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDP--WIVAPTIFFACFPALLFVMIQY 601

Query:   691 PLLSDMISHLYKYSIFTRRSNHL 713
             PLL ++I   Y   IF R    L
Sbjct:   602 PLLKELIFSTYGKRIFDRNMKSL 624

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 140/353 (39%), Positives = 205/353 (58%)

Query:   366 GMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPS--RLLFTAVELGNVEFLM 423
             G++   D K  H QA +L+K++     L D     E+  K +    L  A + GN +F +
Sbjct:   254 GIKQTYDLKKRHSQAQKLLKQMCTS--LRDIMAKNEIRWKETVYEALLEAAKSGNRDFFI 311

Query:   424 VLIQMYPNLIWKVDDHS-RSMFHIAVVHRQEKIFNLIYELGAHK-DLIASYKDENNNNML 481
              +I+    L+W ++  S R++F +AV  ++EKIFNLI+ L   K  L+ SY D+ NNN+L
Sbjct:   312 EIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSY-DKGNNNIL 370

Query:   482 HLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHR 541
             H+AG+L+ PD+L   SGAAL+++RE  WFKE+E +V       KN + +TP  +F   H 
Sbjct:   371 HIAGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHE 430

Query:   542 RLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVS 601
              L +EGE+WMK TA++C  VA LIATV F A FTVPGG D ++G P+ L+   F  F  +
Sbjct:   431 HLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFT 490

Query:   602 DALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFI 661
             D LA F S  S+L+FLSI+TSRY+ +DF+ SLP ++I+G + L              L  
Sbjct:   491 DTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSA 550

Query:   662 VLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLL 714
              +      +  P+   A  P  LF +LQ+PLL +MIS  Y   +F R + + L
Sbjct:   551 SMRHKPA-LVYPLKPLASFPSLLFLMLQYPLLKEMISSTYGKRLFYRDTKNWL 602

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 153/343 (44%), Positives = 219/343 (63%)

Query:   376 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWK 435
             M   A  +V+ LW  V+ L   +I + +     LLF A + GN+E L++LI+ YP+LIW 
Sbjct:     1 MRTLAHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWT 60

Query:   436 VDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKD-ENNNNMLHLAGKLAPPDRLK 494
             VD  ++S+FHIA ++R EKIFN IYELGA KDLIA YK+ E+N+N+LHL  +L PP+RL+
Sbjct:    61 VDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQ 120

Query:   495 IDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDT 554
             + SGAALQ++RE+ W+K ++++V   Y + KN +    H LF++EH  L +EGEKWMK+T
Sbjct:   121 VVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKET 180

Query:   555 ASSCMVVATLIATVMFAAAFTVPGGNDDS-----TGRPIFLHYKSFMVFAVSDALALFCS 609
             A++C++V+TLIATV+FAAAFT+PGGND S      G P F     F VF +SD++AL  S
Sbjct:   181 ATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSS 240

Query:   610 ATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVLGDDFVW 669
              TSI++FLSI+TSRYAE  F  +LP +L++GL  L              L ++   +  W
Sbjct:   241 VTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKW 300

Query:   670 IAIPIATGACVPVSLFALLQFPLLSDMI--SHLYKYSIFTRRS 710
               I +   A      F +L F L  D +  ++L K+    R+S
Sbjct:   301 SLILLVYVASATALSFVVLHFQLWFDTLRSAYLSKFLFHGRKS 343

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 176/487 (36%), Positives = 274/487 (56%)

Query:   233 GNTALCFAAVSGVTKIAEVMVNKNREL--P--SIRGNKGATPLCMAALLGHKEMIWYLYS 288
             GN+ +    ++   K  + + N  RE+  P  S++   G TPL  AA LG  E    L +
Sbjct:    83 GNSEIALH-IAVAAKHKDFVRNLLREMDPPDLSLKNKDGNTPLSFAAALGDIETAEMLIN 141

Query:   289 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF 348
             + +  DL +    + +  +  A LY    +++Q+       +D N +  L++     SA 
Sbjct:   142 MIR--DLPDISNEKTMTPIHIAALYGHG-EMVQYLFSKTSIKDLNDQQYLNLFHTMISAD 198

Query:   349 ASG--SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKP 406
               G  + +  W      +      L P     +AL L+ R    +       + + +   
Sbjct:   199 IYGVFADVPLWMLERVDLYRKELALYPNSN--KALHLLARKTSAISHKSQLNLFQQVAS- 255

Query:   407 SRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK 466
             S LLF A ELGNVE L++LI+ + +L+W VD+++R++FH+A ++R E IF+LIYELG  K
Sbjct:   256 SWLLFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIK 315

Query:   467 DLIASYKD-ENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 525
             DLIASYK+ ++ + +LHL  +L P +R ++ SGAAL +++EL WFK ++++V  SY E K
Sbjct:   316 DLIASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETK 375

Query:   526 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDS-- 583
             N++G   H +F+E+H  L +EGE+WMK+TA++CM+ ATLIATV+FAAA T+PGGNDDS  
Sbjct:   376 NTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGD 435

Query:   584 ----TGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLII 639
                  G P F     F +F +SD++ALF S  SI++FLSI TSRYAEEDF + LP +L+ 
Sbjct:   436 KANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMF 495

Query:   640 GLATLXXXXXXXXXXXXXXLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISH 699
             GL+ L              + ++  +      + I+  A +    FA L F L  + +  
Sbjct:   496 GLSALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYFHLWFNTLRS 555

Query:   700 LYKYSIF 706
             +Y  S+F
Sbjct:   556 VY-ISMF 561

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 67/147 (45%), Positives = 91/147 (61%)

Query:   167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 226
             L+ AALKGDW  A          +  +I+   +T LHIA  A+   FV+ L+  +   DL
Sbjct:    91 LYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGSLESNDL 150

Query:   227 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
             ALRN  GNTALCFAA SGV +IA++++ KN++LP IRG    TP+ MAAL GH EM+ YL
Sbjct:   151 ALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEMVKYL 210

Query:   287 YSVTKEEDLKEEDRIELLVAVIDAGLY 313
             Y  T+  +  +E+ + L  AVI A +Y
Sbjct:   211 YKNTRFREFNDEEFVNLFHAVISADIY 237

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
 Identities = 65/224 (29%), Positives = 111/224 (49%)

Query:   413 AVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL--GAHKDLIA 470
             AV+ G V+ L  +++  P+ +  +D  ++++ H+A  + + ++   I       +K+ + 
Sbjct:   357 AVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLI 416

Query:   471 SYKDENNNNMLHLAGKLAPP---DRLKIDSGAALQ-LRRELHWFKEI-EKVVQPSYR--E 523
             + +D N N  LHLA K   P     L  D+   L+ L  +     +I EK +  SY   E
Sbjct:   417 NEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDSSYTFFE 476

Query:   524 -----AKNSEG--RTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTV 576
                  A  S G  R P ++ S    +   +G K+ KD  ++ ++VATL+AT+ F A FT+
Sbjct:   477 RLTWMALISAGAPRGPKLILSTPVTQN-SDGGKY-KDRVNTLLLVATLVATMTFTAGFTL 534

Query:   577 PGGNDDST---GRPIFLHYKSFMVFAVSDALALFCSATSILMFL 617
             PGG + S    G        +F VF V D LA++CS  +I+  +
Sbjct:   535 PGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALI 578

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 130/532 (24%), Positives = 226/532 (42%)

Query:   196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 255
             R+ DT LH+AA       VQ+++  +  +   + +  G     F A   V +I   +VN+
Sbjct:    72 RHNDTELHLAAQRGDLAAVQQILKDINSQMEGILS--GEE---FDAE--VAEIRASIVNE 124

Query:   256 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI---ELLVAVIDAGL 312
               EL       G T L  AA  GH +++  L   +  E + +++R     L +A I  G 
Sbjct:   125 VNEL-------GETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQ-GH 176

Query:   313 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILD 372
             + +   L+ H   L+     +  T L V A         +QL      +  +       +
Sbjct:   177 HAIVEVLLDHDATLSQTFGPSNATPL-VSAAMRGHTEVVNQLLSKAGNLLEISRSN---N 232

Query:   373 PKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL 432
                +HL A +    + + +L  D      + +K    L  AV+  + E + +L+   P +
Sbjct:   233 KNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAI 292

Query:   433 IWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR 492
             + + D    +  H+A   ++ +I  L+  L    D  A+    ++   L +A  L   + 
Sbjct:   293 VMQPDKSCNTALHVATRKKRAEIVELLLSL---PDTNANTLTRDHKTALDIAEGLPLSEE 349

Query:   493 ---LK---IDSGA--ALQL---RRELH-WFKEIEKVVQPSYREAKNSEGRTPHILFSEEH 540
                +K     SGA  A +L   R EL     +I+  V     + K +     +I  S+E 
Sbjct:   350 SSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNI--SKEL 407

Query:   541 RRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAV 600
             R+L REG   + +  +S  VVA L ATV FAA FTVPGG D++ G  + +   SF +F +
Sbjct:   408 RKLHREG---INNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFI 463

Query:   601 SDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLF 660
              +ALALF S   +++ ++++      E  V  + N+L+  LA++               +
Sbjct:   464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLM-WLASMCTSVAFLASS-----Y 517

Query:   661 IVLGDDFVWIA--IPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRS 710
             IV+G    W A  + +  G  +   L  +  + + S     + K     RRS
Sbjct:   518 IVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSARRS 569

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 111/456 (24%), Positives = 197/456 (43%)

Query:   196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 255
             R+ DT LH+AA       V+++++ +   D  +   +  T   F     V +I   +VN+
Sbjct:    86 RHNDTELHLAAQRGDLASVKQILSDI---DSQITGTI--TGADFD--DEVAQIMTSVVNE 138

Query:   256 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR--IELLVAVIDAGLY 313
               EL       G TPL  AA  G+ +++  L   T  E L +++    + L      G  
Sbjct:   139 VNEL-------GETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHR 191

Query:   314 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDP 373
              +   L++H PQL+     +  T L   A +  +      L      +  +         
Sbjct:   192 SIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAK-DSSLLEISRSNG---K 247

Query:   374 KLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI 433
               +HL A +    +   +L  D        +K    L  AV+  + + + +L++  P ++
Sbjct:   248 NALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIV 307

Query:   434 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN-----NNMLHLAGKLA 488
                D    ++ HIA   ++ +I N + +L    ++ A  +D          + H + + A
Sbjct:   308 MLPDKFGNTVLHIATRKKRAEIVNELLQL-PDTNVNALTRDHKTAYDIAEGLTH-SEETA 365

Query:   489 PPDRLKIDSGA--ALQL---RRELH-WFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRR 542
                 +    GA  A +L   R EL     EI+K V     + + +      I  ++E R+
Sbjct:   366 EIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGI--AKELRK 423

Query:   543 LVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSD 602
             L R G   + +  +S  VVA L ATV FAA FTVPGG+DD  G  + +H  SF +F + +
Sbjct:   424 LHRAG---INNATNSVTVVAVLFATVAFAAIFTVPGGDDDH-GVAVMVHATSFKIFFIFN 479

Query:   603 ALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLI 638
             A+ALF S   +++ ++++      E  V  + N+L+
Sbjct:   480 AIALFTSLAVVVVQITLVRGETKTERRVVEVINKLM 515

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 117/469 (24%), Positives = 207/469 (44%)

Query:   231 KVGNTALCFAAVSG-VTKIAEVM-----VNKNRELPSIRGNKGATPLCMAALLGH----K 280
             K G++ L  AA +G + K+ E++     + + +EL S +  +G TPL  AA  GH    +
Sbjct:   111 KRGDSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVE 170

Query:   281 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
             EM+ ++   T    +K  +  +        G  +    L++  P LAM  D +  TALH 
Sbjct:   171 EMLKHMDLDTAS--VKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHT 228

Query:   341 LARKPSAFASGSQLGFWRRC--IYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSK 398
              A +         L        I    G  A+     M  +  E+VK L     + +D+ 
Sbjct:   229 AASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHR--EVVKSL-----IGNDAS 281

Query:   399 IG-ELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFN 457
             IG    +K    L  AV+  N   ++ L++  P ++   D    +  H A    + KI  
Sbjct:   282 IGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVR 341

Query:   458 LIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKI--DSGAAL--QLRRELHWFKEI 513
              +       +L A  K    +  L +A K+  P+ + +  ++GAA    L +  +  K++
Sbjct:   342 CLVSFDGI-NLNAMNKA--GDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQL 398

Query:   514 EKVVQPSYREAKNS--EGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFA 571
              + V     E ++   + R   +      +RL +     + +  +S  VVA LIATV FA
Sbjct:   399 NQTVSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFA 458

Query:   572 AAFTVPGGNDDSTGRPIFLHYKS-------FMVFAVSDALALFCSATSILMFLSIIT-SR 623
             A FT+PG  ++   + + L  ++       F+VF + D+LALF S   +++  S++   +
Sbjct:   459 AIFTIPGQYEEDRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQ 518

Query:   624 YAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVLGDDFVWIAI 672
              A+++ V  + N+L+  LA L               FIV+G + +W+AI
Sbjct:   519 KAKKNLVFVI-NKLM-WLACLFISVAFVSLS-----FIVVGKEDIWLAI 560

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	715
pfam13962	114	pfam13962, PGG, Domain of unknown function	6e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  125 bits (316), Expect = 6e-34
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 13/121 (10%)

Query: 548 EKWMKDTASSCMVVATLIATVMFAAAFTVPGG-----NDDSTGRPIFL-HYKSFMVFAVS 601
            +W++ T +S +VVATLIATV FAA FT PGG          G PI     + F  F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 602 DALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFI 661
           + +A   S  ++++ L I+        F   LP RL+  L  L++S+ ++M AFAA  + 
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 662 V 662
           V
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.5 bits (160), Expect = 9e-13
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
           PLHLAA  G  +  +       + V  + +  + T LH+AA       V+ L+      D
Sbjct: 10  PLHLAASNGHLEVVKLLLENGAD-VNAKDNDGR-TPLHLAAKNGHLEIVKLLLE--KGAD 65

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
           +  R+K GNT L  AA +G   + ++++       + R   G TPL +AA  GH E++
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGA-DVNARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 37/151 (24%)

Query: 194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
              +  T LH+AA       V+ L+      D+  ++  G T L  AA +G  +I ++++
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY 313
            K  +  + R   G TPL +AA  G+ +++  L        LK    +            
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLL--------LKHGADVN----------- 100

Query: 314 DVALDLIQHHPQLAMARDGNGETALHVLARK 344
                          ARD +G T LH+ A+ 
Sbjct: 101 ---------------ARDKDGRTPLHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 226
           LHLAA  G+ +  +       +   V +    DTALH+AA       V+ L+      D+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDT-DTALHLAARNGNLEIVKLLLEHGA--DV 54

Query: 227 ALRNKVGNTALCFAAVSGVTKIAEVMVNKN 256
             ++K GNTAL  AA +G  +I ++++   
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 202 LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS 261
           LH+AA       V+ L+      D+ L +   +TAL  AA +G  +I ++++    ++ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG--ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 262 IRGNKGATPLCMAALLGHKEMIWYLYS 288
            +   G T L +AA  G+ E++  L  
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 166 PLHLAALKG-----DWDFARNFFNLNPEAVC-VRISRNQDTALHIAAGARRTLFVQELVN 219
           PLHLAAL G     + + A+       +         + +T LH AA       V+ L  
Sbjct: 109 PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL-- 166

Query: 220 LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 265
           L    D   RN  G TAL  AA +G  ++ +++++K   L  ++ N
Sbjct: 167 LEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 166 PLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 221
           PLHLAA  G  +  +       ++N         ++ +T LH+AA       V+ L+   
Sbjct: 43  PLHLAAKNGHLEIVKLLLEKGADVN------ARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

Query: 222 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
              D+  R+K G T L  AA +G  ++ ++++
Sbjct: 97  A--DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 29/140 (20%)

Query: 409 LLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 468
            L  A   G++E + +L++   + +   D+  R+  H+A  +   +I  L+ E GA  + 
Sbjct: 10  PLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 469 IASYKDENNNNMLHLAGKLAPPDRLK--IDSGAALQLRRELHWFKEIEKVVQPSYREAKN 526
               +D++ N  LHLA +    D +K  +  GA +                      A++
Sbjct: 69  ----RDKDGNTPLHLAARNGNLDVVKLLLKHGADV---------------------NARD 103

Query: 527 SEGRTP-HILFSEEHRRLVR 545
            +GRTP H+     H  +V+
Sbjct: 104 KDGRTPLHLAAKNGHLEVVK 123

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	715
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
PF13962	113	PGG: Domain of unknown function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.29
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.76
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.67
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.65
PF13606	30	Ank_3: Ankyrin repeat	98.61
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.6
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.59
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.59
PF13606	30	Ank_3: Ankyrin repeat	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.47
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.45
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.33
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.24
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.07
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.02
KOG0511	516	consensus Ankyrin repeat protein [General function	97.95
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.89
KOG2384	223	consensus Major histocompatibility complex protein	97.86
KOG0511	516	consensus Ankyrin repeat protein [General function	97.79
KOG2384	223	consensus Major histocompatibility complex protein	97.67
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.3
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.23
KOG2505	591	consensus Ankyrin repeat protein [General function	95.41
KOG2505	591	consensus Ankyrin repeat protein [General function	95.31
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.77
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.63
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.07
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.11
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.82
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.3

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.6e-47  Score=438.81  Aligned_cols=340  Identities=16%  Similarity=0.151  Sum_probs=284.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHH---------------------------------
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA---------------------------------  206 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa---------------------------------  206 (715)
                      +..++||||.|+..|+.++|+.|++++|...... |..|.||||+|+                                 
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~-~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELIYIT-DHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccchhh-chhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            5568899999999999999999999988766554 888999999666                                 


Q ss_pred             -------------------------------------HcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHH
Q 005095          207 -------------------------------------GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIA  249 (715)
Q Consensus       207 -------------------------------------~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv  249 (715)
                                                           ..|+.+++++|++  .|+++|.+|..|.||||+|+..|+.++|
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~--~Gadvn~~d~~G~TpLh~Aa~~G~~~iv  194 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE--GGADVNAKDIYCITPIHYAAERGNAKMV  194 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh--CCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence                                                 5578899999999  8999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-----------------------------hcCCCCCcccccc
Q 005095          250 EVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY-----------------------------SVTKEEDLKEEDR  300 (715)
Q Consensus       250 ~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll-----------------------------~~ga~~~~~~~~g  300 (715)
                      ++|+++|++++ ..+.+|.||||+|+..|+.+++++|+                             +.|++++..+..|
T Consensus       195 ~~LL~~Gad~n-~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g  273 (682)
T PHA02876        195 NLLLSYGADVN-IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK  273 (682)
T ss_pred             HHHHHCCCCcC-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999986 78889999999999998888776655                             4555677778889


Q ss_pred             ccHHHHHHHcCCh-hHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhc--CCcchhccCCchhH
Q 005095          301 IELLVAVIDAGLY-DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYS--VPGMRAILDPKLMH  377 (715)
Q Consensus       301 ~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~~~~lh  377 (715)
                      .||||+|+..++. ++++.|++.|+++ +.+|.+|+||||+|+..|.      ..+.++.++..  .++..+..|.||||
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~------~~~~v~~Ll~~gadin~~d~~g~TpLh  346 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGY------DTENIRTLIMLGADVNAADRLYITPLH  346 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCC------CHHHHHHHHHcCCCCCCcccCCCcHHH
Confidence            9999999999886 5889999999885 8889999999999998874      35677777754  45566778899999


Q ss_pred             HHHH-----HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCC
Q 005095          378 LQAL-----ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ  452 (715)
Q Consensus       378 ~a~~-----~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~  452 (715)
                      .|+.     ++++.|+     ..+++++.+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++
T Consensus       347 ~A~~~~~~~~iv~lLl-----~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~  420 (682)
T PHA02876        347 QASTLDRNKDIVITLL-----ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTN  420 (682)
T ss_pred             HHHHhCCcHHHHHHHH-----HcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCC
Confidence            9874     3344443     45788888899999999999999999999999999999 77889999999999987665


Q ss_pred             -HHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-chhHhhhhcCCC
Q 005095          453 -EKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSEGR  530 (715)
Q Consensus       453 -~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~  530 (715)
                       ..++++|+++|++++.    +|..|+||||+|++.+..                   .+.++.++. +++++.+|..|.
T Consensus       421 ~~~~vk~Ll~~gadin~----~d~~G~TpLh~Aa~~~~~-------------------~~iv~lLl~~Gad~n~~d~~g~  477 (682)
T PHA02876        421 PYMSVKTLIDRGANVNS----KNKDLSTPLHYACKKNCK-------------------LDVIEMLLDNGADVNAINIQNQ  477 (682)
T ss_pred             HHHHHHHHHhCCCCCCc----CCCCCChHHHHHHHhCCc-------------------HHHHHHHHHCCCCCCCCCCCCC
Confidence             5678999999999874    999999999999987632                   123444444 566799999999


Q ss_pred             CchhhhHHH
Q 005095          531 TPHILFSEE  539 (715)
Q Consensus       531 Tpl~~a~~~  539 (715)
                      ||+++|.+.
T Consensus       478 tpl~~a~~~  486 (682)
T PHA02876        478 YPLLIALEY  486 (682)
T ss_pred             CHHHHHHHh
Confidence            999999864

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-44  Score=387.20  Aligned_cols=406  Identities=16%  Similarity=0.169  Sum_probs=315.2

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      .....|..|.||||+|+.....+.++.|++.+.+.. .. +.++.+|||+|+..|+.++.+.|++  .|+|+|..|+.|.
T Consensus        80 ~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~-~~-n~~~~aplh~A~~~~~~s~L~~Ll~--~~~dvnl~de~~~  155 (929)
T KOG0510|consen   80 ISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTP-LR-NLNKNAPLHLAADSGNYSCLKLLLD--YGADVNLEDENGF  155 (929)
T ss_pred             hhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCC-hh-hhhccCchhhccccchHHHHHHHHH--hcCCccccccCCC
Confidence            345567778899999999999999999998766543 33 8899999999999999999999999  7899999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCccccccccHHHHHHH
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS-----VTKEEDLKEEDRIELLVAVID  309 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-----~ga~~~~~~~~g~t~L~~A~~  309 (715)
                      ||||+||..++.|..+.|++.|+++. ..|.+|.+|+|.|++.|..|+.+..+.     ++..+|.-+.+|.||||.|+.
T Consensus       156 TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  156 TPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             chhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            99999999999999999999999986 789999999999999999999999998     678899999999999999999


Q ss_pred             cCChhHHHHHHhhCccc--------------ceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCC--cchhccCC
Q 005095          310 AGLYDVALDLIQHHPQL--------------AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRAILDP  373 (715)
Q Consensus       310 ~g~~~iv~~Ll~~~~~~--------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~  373 (715)
                      .|+.++++.+++.+...              ++..|.+|.||||+|++.|+       .+.++.++..+.  +.++..+.
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~-------~~svd~Ll~~Ga~I~~kn~d~~  307 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG-------PESVDNLLGFGASINSKNKDEE  307 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC-------hhHHHHHHHcCCcccccCCCCC
Confidence            99999999999987642              35678999999999999986       788888886655  45567888


Q ss_pred             chhHHHHH----HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCcc--ccCCCCCcHHHHH
Q 005095          374 KLMHLQAL----ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW--KVDDHSRSMFHIA  447 (715)
Q Consensus       374 ~~lh~a~~----~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~--~~d~~G~T~Lh~A  447 (715)
                      +|||.|+.    +.++.|++   ..+....++.|..|+||||+|+++||..+++.|+++|+...+  ..|.+|.||||.|
T Consensus       308 spLH~AA~yg~~ntv~rLL~---~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~A  384 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQ---ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLA  384 (929)
T ss_pred             CchHHHHHcccHHHHHHHHh---CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHH
Confidence            99999995    55666655   245567788899999999999999999999999999999665  5699999999999


Q ss_pred             HHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhH-HHHHHhhc-chhHhhh
Q 005095          448 VVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWF-KEIEKVVQ-PSYREAK  525 (715)
Q Consensus       448 ~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~-~~v~~ll~-~~~~~~~  525 (715)
                      +..|+..+|++|+.+|+++.+    +|+.|.+++++--....+..+.-..+.......-+..+ +.++..+. .......
T Consensus       385 a~~g~~~av~~Li~~Ga~I~~----~n~~g~SA~~~~~~~~~p~~~~~~~~n~c~~~~~i~~~pe~~e~vlD~c~l~~~e  460 (929)
T KOG0510|consen  385 AKYGNTSAVQKLISHGADIGV----KNKKGKSAFDTRPDRCLPVFVHRSPFNKCPTTELIEPLPECFEIVLDFCILKSQE  460 (929)
T ss_pred             HHhccHHHHHHHHHcCCceee----ccccccccccccccccccHHHhhCCCCCcchhhhhccchHHHHHHHHHHHHHHhh
Confidence            999999999999999999985    89999999996221111110111111000001111111 12222222 1122334


Q ss_pred             hcCCCCchhhhHH---------HhhHhhhh-------hhhhHHhh----hhhHHHHHHHHHHHHhHhhccCCCC
Q 005095          526 NSEGRTPHILFSE---------EHRRLVRE-------GEKWMKDT----ASSCMVVATLIATVMFAAAFTVPGG  579 (715)
Q Consensus       526 n~~G~Tpl~~a~~---------~~~~~~~~-------~~~~~k~~----~~s~~vvA~LIATvtFaA~ft~PGG  579 (715)
                      .+++.||.+.-..         +..++...       ..||.+-.    -..+++-+..++.+|+=.-.+.||-
T Consensus       461 ~~~~~~~~Q~~~~~~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~g~~~~~~nL~~Y~lFlv~lT~Yv~~~~~~~  534 (929)
T KOG0510|consen  461 RKDSPTPLQDEAAPILNIMVDKEQIELLEHPLSSSFLFMKWNRYGKYFHLNNLLIYSLFLVSLTIYVLLIKAGM  534 (929)
T ss_pred             ccCCCChhhhhhhhHHHHHhhhhHHHHhcChhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5667888773222         22222221       12455532    2456777777888888888888864

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=387.84  Aligned_cols=303  Identities=14%  Similarity=0.124  Sum_probs=210.7

Q ss_pred             cccCCCCCCcccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcC--CHHHHHHHHhcCC
Q 005095          145 SLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR--RTLFVQELVNLMT  222 (715)
Q Consensus       145 ~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~  222 (715)
                      .+.+.|+   +++..|..|+||||+||..|+.++++.|++.+ .+++.+ |.+|.||||+|+..+  +.+++++|++  +
T Consensus        57 ~Ll~~Ga---dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G-Adin~~-d~~g~TpLh~A~~~~~~~~e~v~lLl~--~  129 (446)
T PHA02946         57 ELLHRGY---SPNETDDDGNYPLHIASKINNNRIVAMLLTHG-ADPNAC-DKQHKTPLYYLSGTDDEVIERINLLVQ--Y  129 (446)
T ss_pred             HHHHCcC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCC-CCCCCCHHHHHHHcCCchHHHHHHHHH--c
Confidence            3455565   34556666777777777777777777777654 334443 677777777777655  3677777777  6


Q ss_pred             Cccccc-ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC--HHHHHHHHhcCCCCCccccc
Q 005095          223 PEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH--KEMIWYLYSVTKEEDLKEED  299 (715)
Q Consensus       223 g~~i~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~--~~iv~~Ll~~ga~~~~~~~~  299 (715)
                      |++++. .|.+|.|||| |+..|+.+++++|+++|++++ .+|..|+||||+|+..++  .+++++|+++|++++.+|.+
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~  207 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD  207 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC
Confidence            777774 5667777776 555677777777777777764 677777777777765443  56777777777777777777


Q ss_pred             cccHHHHHHHcC--ChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhH
Q 005095          300 RIELLVAVIDAG--LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMH  377 (715)
Q Consensus       300 g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh  377 (715)
                      |.||||+|+..+  +.+++++|++ ++++ +.+|..|.||||+|+..++      ..++++.++.......   +++ +|
T Consensus       208 G~TpLH~Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~------~~~~~~~Ll~~g~~~~---~~~-~~  275 (446)
T PHA02946        208 GNTPLHIVCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLS------PAHLINKLLSTSNVIT---DQT-VN  275 (446)
T ss_pred             CCCHHHHHHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCC------hHHHHHHHHhCCCCCC---CcH-HH
Confidence            777777777665  5667777664 5553 6777777777777777653      2355566665543221   222 45


Q ss_pred             HHHH----HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCH
Q 005095          378 LQAL----ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQE  453 (715)
Q Consensus       378 ~a~~----~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~  453 (715)
                      .++.    +.++.+..+     +      ...|.||||+|+++|+.++|++|+++++        .|+||||+|+.+++.
T Consensus       276 ~a~~~~~~~~~e~l~~~-----g------~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~  336 (446)
T PHA02946        276 ICIFYDRDDVLEIINDK-----G------KQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYE  336 (446)
T ss_pred             HHHHcCchHHHHHHHHc-----C------cccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHH
Confidence            5442    222222221     1      1357899999999999999999999864        478999999999999


Q ss_pred             HHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCc
Q 005095          454 KIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  492 (715)
Q Consensus       454 ~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~  492 (715)
                      +++++|+.+|++++.    + .+|+||||+|++.++.+.
T Consensus       337 ~~v~~Ll~~ga~~n~----~-~~G~t~l~~a~~~~~~~~  370 (446)
T PHA02946        337 TMVDYLLFNHFSVDS----V-VNGHTCMSECVRLNNPVI  370 (446)
T ss_pred             HHHHHHHHCCCCCCC----c-cccccHHHHHHHcCCHHH
Confidence            999999999999883    4 589999999999988653

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-42  Score=403.71  Aligned_cols=321  Identities=16%  Similarity=0.129  Sum_probs=249.4

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      +++.+|..|+||||+||..|+.++|++|++.+.+ ++.. +..|.||||+|+..|+.+++++|++  .+.+++    .+.
T Consensus       170 dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~--~~~~~~----~~~  241 (682)
T PHA02876        170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNII-ALDDLSVLECAVDSKNIDTIKAIID--NRSNIN----KND  241 (682)
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCcc-CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCC----CCc
Confidence            3444555566666666666666666666654432 2222 4556666666666666666666665  444433    234


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH-HHHHHHHhcCCCCCccccccccHHHHHHHcC-C
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK-EMIWYLYSVTKEEDLKEEDRIELLVAVIDAG-L  312 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~-~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g-~  312 (715)
                      ++|+.|+..++.+++++|++.|++++ ..|..|.||||+|+..|+. +++++|+++|++++.+|.+|.||||.|+..| .
T Consensus       242 ~~L~~ai~~~~~~~~~~Ll~~g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~  320 (682)
T PHA02876        242 LSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYD  320 (682)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCC
Confidence            56666666666666667777777775 6788999999999999996 6999999999999999999999999999999 5


Q ss_pred             hhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhc--CCcchhccCCchhHHHHH----HHHHH
Q 005095          313 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYS--VPGMRAILDPKLMHLQAL----ELVKR  386 (715)
Q Consensus       313 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~~~~lh~a~~----~~~~~  386 (715)
                      .++++.|+..|+++ +..|..|.||||+|+..+.      ..++++.++..  .++.++..|.||||+|+.    ++++.
T Consensus       321 ~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~------~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~  393 (682)
T PHA02876        321 TENIRTLIMLGADV-NAADRLYITPLHQASTLDR------NKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT  393 (682)
T ss_pred             HHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCC------cHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            89999999999996 8899999999999998653      46677777754  456778899999999985    66776


Q ss_pred             HHHHHHhcCcccccccccCCchHHHHHHHcCC-HHHHHHHHHhCCCCccccCCCCCcHHHHHHHhC-CHHHHHHHHHcCc
Q 005095          387 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGN-VEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR-QEKIFNLIYELGA  464 (715)
Q Consensus       387 l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~-~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~ga  464 (715)
                      |++.     +++++..+..|.||||+|+..++ .+++++|+++|++ ++.+|..|+||||+|+..+ +.+++++|+++|+
T Consensus       394 Ll~~-----gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Ga  467 (682)
T PHA02876        394 LLDY-----GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA  467 (682)
T ss_pred             HHHC-----CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCC
Confidence            6654     67788888999999999998766 5789999999999 8899999999999999976 7899999999999


Q ss_pred             chhhhhcccCCCCchHHHHhhhhCCCCccccCCCchh
Q 005095          465 HKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAAL  501 (715)
Q Consensus       465 ~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~  501 (715)
                      +++.    +|..|+||||+|+.++....+++..|++.
T Consensus       468 d~n~----~d~~g~tpl~~a~~~~~~v~~Ll~~~a~~  500 (682)
T PHA02876        468 DVNA----INIQNQYPLLIALEYHGIVNILLHYGAEL  500 (682)
T ss_pred             CCCC----CCCCCCCHHHHHHHhCCHHHHHHHCCCCC
Confidence            9984    99999999999998765545555666544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.9e-42  Score=373.15  Aligned_cols=319  Identities=13%  Similarity=0.092  Sum_probs=253.8

Q ss_pred             CChHHHHHHH--cCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHH
Q 005095          163 SYAPLHLAAL--KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA  240 (715)
Q Consensus       163 g~T~Lh~Aa~--~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~A  240 (715)
                      +.++||.++.  .++.++|++|++.+. +++.+ |.+|+||||+||..|+.++|++|++  +|++++.+|.+|.||||+|
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Ga-dvn~~-d~~G~TpLh~Aa~~g~~eiv~lLL~--~GAdin~~d~~g~TpLh~A  112 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGY-SPNET-DDDGNYPLHIASKINNNRIVAMLLT--HGADPNACDKQHKTPLYYL  112 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcC-CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHH--CcCCCCCCCCCCCCHHHHH
Confidence            4699998774  457789999997765 45554 8999999999999999999999999  8999999999999999999


Q ss_pred             HHcC--cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCC--hhHH
Q 005095          241 AVSG--VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL--YDVA  316 (715)
Q Consensus       241 a~~g--~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~--~~iv  316 (715)
                      +..+  ..+++++|+++|++++...|..|.|||| |+..|+.+++++|+++|++++.+|..|+||||.|+..++  .+++
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            8876  4899999999999998667999999997 777899999999999999999999999999999987655  5899


Q ss_pred             HHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhh-hcCCcchhccCCchhHHHHHH-----HHHHHHHH
Q 005095          317 LDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCI-YSVPGMRAILDPKLMHLQALE-----LVKRLWEQ  390 (715)
Q Consensus       317 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~lh~a~~~-----~~~~l~~~  390 (715)
                      ++|+++|+++ +.+|.+|+||||+|+..+.     ...++++.++ +...+.++..|.||||+|+..     +++.|+++
T Consensus       192 ~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~-----~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        192 SWMMKLGISP-SKPDHDGNTPLHIVCSKTV-----KNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             HHHHHcCCCC-cccCCCCCCHHHHHHHcCC-----CcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence            9999999996 8999999999999998763     1355666555 334556666777777777642     33344333


Q ss_pred             HHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhh
Q 005095          391 VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIA  470 (715)
Q Consensus       391 ~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~  470 (715)
                           +...     .++| ++.|+..++.++++.+.++|.       ..|+||||+|+++|+.++|++|+++|+      
T Consensus       266 -----g~~~-----~~~~-~~~a~~~~~~~~~e~l~~~g~-------~~~~TpLh~Aa~~g~~eivk~Ll~~~~------  321 (446)
T PHA02946        266 -----SNVI-----TDQT-VNICIFYDRDDVLEIINDKGK-------QYDSTDFKMAVEVGSIRCVKYLLDNDI------  321 (446)
T ss_pred             -----CCCC-----CCcH-HHHHHHcCchHHHHHHHHcCc-------ccCCCHHHHHHHcCCHHHHHHHHHCCC------
Confidence                 2221     1233 677777777777777776654       357899999999999999999998763      


Q ss_pred             cccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-chhHhhhhcCCCCchhhhHHHhhH
Q 005095          471 SYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSEGRTPHILFSEEHRR  542 (715)
Q Consensus       471 ~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~Tpl~~a~~~~~~  542 (715)
                           .|+||||+|+..++.+                    .++.++. +++++.+ .+|.||+++|.+....
T Consensus       322 -----~~~t~L~~A~~~~~~~--------------------~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~  368 (446)
T PHA02946        322 -----ICEDAMYYAVLSEYET--------------------MVDYLLFNHFSVDSV-VNGHTCMSECVRLNNP  368 (446)
T ss_pred             -----ccccHHHHHHHhCHHH--------------------HHHHHHHCCCCCCCc-cccccHHHHHHHcCCH
Confidence                 4789999999987643                    3344443 4455765 5899999999876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-41  Score=371.63  Aligned_cols=275  Identities=18%  Similarity=0.200  Sum_probs=231.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      ..|+.|+..|+.+.++.|++.++..++.. +..|.||||.|++.|+.++|++|++  .|++++..+..|.||||.|+..|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~--~Ga~~n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIK--HGADINHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcC
Confidence            36889999999999999998777666554 7788999999999999999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCC----------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccccc
Q 005095          245 VTKIAEVMVNKNRELP----------------------SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE  302 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~----------------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  302 (715)
                      +.+++++|+++|++..                      +.++..|.||||+|+..|+.++|++|+++|++++.++.+|.|
T Consensus        80 ~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~t  159 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY  159 (434)
T ss_pred             CHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            9999999998876531                      246777888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHH
Q 005095          303 LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALE  382 (715)
Q Consensus       303 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~  382 (715)
                      |||+|+..|+.+++++|+++|++. +..|..|+||||+|+..|+                                  .+
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~----------------------------------~~  204 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGD----------------------------------YA  204 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC----------------------------------HH
Confidence            888888888888888888888775 6778888888888888775                                  36


Q ss_pred             HHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhC-CHHHHHHHHH
Q 005095          383 LVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR-QEKIFNLIYE  461 (715)
Q Consensus       383 ~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~  461 (715)
                      ++++|++.     +.+++.++..|.||||.|+..++ +.+++|+ .+++ ++.+|..|+||||+|+..+ +.+++++|++
T Consensus       205 iv~~Ll~~-----g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~  276 (434)
T PHA02874        205 CIKLLIDH-----GNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLY  276 (434)
T ss_pred             HHHHHHhC-----CCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHH
Confidence            77777665     55667778889999999999875 5667666 5777 7889999999999999875 8899999999


Q ss_pred             cCcchhhhhcccCCCCchHHHHhhhhCC
Q 005095          462 LGAHKDLIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       462 ~ga~~~~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      +|++++.    +|..|+||||+|++.++
T Consensus       277 ~gad~n~----~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        277 HKADISI----KDNKGENPIDTAFKYIN  300 (434)
T ss_pred             CcCCCCC----CCCCCCCHHHHHHHhCC
Confidence            9999985    99999999999998764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.6e-42  Score=364.77  Aligned_cols=337  Identities=19%  Similarity=0.164  Sum_probs=282.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChH
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA  236 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~Tp  236 (715)
                      ...+..|.|++|.|+..+..      +.+. ..... .|..|+||||+|+.....+.|+.|++  .|++++..|.++.+|
T Consensus        55 ~~~~~~gd~~~~~~~~~~y~------~~~~-~~~~a-~D~~~n~~l~~a~~~~~~~~i~~Lls--~gad~~~~n~~~~ap  124 (929)
T KOG0510|consen   55 PGKRAFGDTELHHASARNYI------LSKL-AISYA-KDSADNTPLHAAVEYNQGDKIQVLLS--YGADTPLRNLNKNAP  124 (929)
T ss_pred             chhhhhchhHHHHHHhhcch------hhhh-hhhhh-hhcccCchhHHHhhcchHHHHHHHHh--cCCCCChhhhhccCc
Confidence            34566788999999999865      2111 12233 38899999999999999999999999  899999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHH
Q 005095          237 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVA  316 (715)
Q Consensus       237 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv  316 (715)
                      +|+|+..|+.++.+.|+++|++++ ..|..|.||||+||..++.|..+.|++.|+++-..|.+|.+|+|.|++.|..++.
T Consensus       125 lh~A~~~~~~s~L~~Ll~~~~dvn-l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~m  203 (929)
T KOG0510|consen  125 LHLAADSGNYSCLKLLLDYGADVN-LEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECM  203 (929)
T ss_pred             hhhccccchHHHHHHHHHhcCCcc-ccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhh
Confidence            999999999999999999999986 8999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHh-----hCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCC-----------------cchhccCCc
Q 005095          317 LDLIQ-----HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP-----------------GMRAILDPK  374 (715)
Q Consensus       317 ~~Ll~-----~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~-----------------~~~~~~~~~  374 (715)
                      +..+.     ++.. ++..+.+|.||||.|+..|+       .+.++.|++...                 +..+..|.|
T Consensus       204 Ei~l~~~g~~r~~~-in~~~n~~~~pLhlAve~g~-------~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t  275 (929)
T KOG0510|consen  204 EIFLPEHGYERQTH-INFDNNEKATPLHLAVEGGD-------IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT  275 (929)
T ss_pred             hhhhccccchhhcc-cccccCCCCcchhhhhhcCC-------HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc
Confidence            99998     4444 47888999999999999875       788888885543                 334567899


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHH-hCCCCccccCCCCCcHHHHHHHhCCH
Q 005095          375 LMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQE  453 (715)
Q Consensus       375 ~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~-~~~d~~~~~d~~G~T~Lh~A~~~~~~  453 (715)
                      |||+++.+.-...++.++ ..+++++.++.++.||||.||..|+.+.|+.||+ .+--..+..|..|+||||+|+++||.
T Consensus       276 pLH~a~r~G~~~svd~Ll-~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~  354 (929)
T KOG0510|consen  276 PLHYAARQGGPESVDNLL-GFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD  354 (929)
T ss_pred             hHHHHHHcCChhHHHHHH-HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH
Confidence            999999644333333222 2378888999999999999999999999999999 66666788899999999999999999


Q ss_pred             HHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCc--cccCCCchhhhHHHhhhHHHHHHhhcchhHhhhhcCCCC
Q 005095          454 KIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRT  531 (715)
Q Consensus       454 ~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~--l~l~~ga~~~~~~~l~~~~~v~~ll~~~~~~~~n~~G~T  531 (715)
                      +++++|+++|++.... .+.|.+|+||||+|++.|+...  +++.+|+                     ++..+|++|+|
T Consensus       355 ~v~qlLl~~GA~~~~~-~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga---------------------~I~~~n~~g~S  412 (929)
T KOG0510|consen  355 RVVQLLLNKGALFLNM-SEADSDGNTALHLAAKYGNTSAVQKLISHGA---------------------DIGVKNKKGKS  412 (929)
T ss_pred             HHHHHHHhcChhhhcc-cccccCCchhhhHHHHhccHHHHHHHHHcCC---------------------ceeeccccccc
Confidence            9999999999987621 1459999999999999998652  3344444                     44666777776


Q ss_pred             chhh
Q 005095          532 PHIL  535 (715)
Q Consensus       532 pl~~  535 (715)
                      ++++
T Consensus       413 A~~~  416 (929)
T KOG0510|consen  413 AFDT  416 (929)
T ss_pred             cccc
Confidence            6663

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-40  Score=365.13  Aligned_cols=344  Identities=12%  Similarity=0.089  Sum_probs=259.7

Q ss_pred             cCCCCCChHHHHHHHcC---CHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccccCC
Q 005095          158 RNCFTSYAPLHLAALKG---DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR--RTLFVQELVNLMTPEDLALRNKV  232 (715)
Q Consensus       158 ~~~~~g~T~Lh~Aa~~g---~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~g~~i~~~d~~  232 (715)
                      .+|..|+||||+|+..|   +.++|++||+++ ++++.+ |..|+||||+|+..|  +.|+|++|++...+++++..+..
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G-Adin~k-D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG-VERLCR-NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC-CCCccc-CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            67888999999999997   599999999764 455665 999999999999977  79999999994335566888888


Q ss_pred             CChHHHHHHH--cCcHHHHHHHHh-cCCCCCccCC----CCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-------cccc
Q 005095          233 GNTALCFAAV--SGVTKIAEVMVN-KNRELPSIRG----NKGATPLCMAALLGHKEMIWYLYSVTKEED-------LKEE  298 (715)
Q Consensus       233 G~TpLh~Aa~--~g~~~iv~~Ll~-~g~~~~~~~d----~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~-------~~~~  298 (715)
                      +.+|||.++.  +++.++|++|++ .+.+++...+    ..|.+|+++|...++.|+|++|+++|++++       ..+.
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~  193 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDS  193 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccC
Confidence            9999999998  899999999997 5567653322    379999999999999999999999999985       1333


Q ss_pred             cc-ccHHHHH------HHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhh---------
Q 005095          299 DR-IELLVAV------IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY---------  362 (715)
Q Consensus       299 ~g-~t~L~~A------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~---------  362 (715)
                      .+ .|.||++      ..+++.|++++|+++|+++ +.+|.+|+||||++....+     .+.++++.|+.         
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~-----~~~eiv~~Li~~~~~~~~~~  267 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCST-----IDIEIVKLLIKDVDTCSVYD  267 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCc-----ccHHHHHHHHhccccccccc
Confidence            33 4556643      3567899999999999996 9999999999996433321     13566777765         


Q ss_pred             -----------------------cCCcc----------------------hhccCCc---------------------hh
Q 005095          363 -----------------------SVPGM----------------------RAILDPK---------------------LM  376 (715)
Q Consensus       363 -----------------------~~~~~----------------------~~~~~~~---------------------~l  376 (715)
                                             .+.+.                      .+..|.+                     .|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l  347 (672)
T PHA02730        268 DISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAML  347 (672)
T ss_pred             cccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHH
Confidence                                   11111                      1111111                     11


Q ss_pred             HHHH-------HHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCC----HHHHHHHHHhCCC-CccccCCCCCcHH
Q 005095          377 HLQA-------LELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VEFLMVLIQMYPN-LIWKVDDHSRSMF  444 (715)
Q Consensus       377 h~a~-------~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~----~eiv~~Ll~~~~d-~~~~~d~~G~T~L  444 (715)
                      |.-.       .++++.|++     +|++++.. ..|.||||+|+..++    .+++++|+++|++ .++.+|..|+|||
T Consensus       348 ~~Y~~~~~~v~ieIvelLIs-----~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~L  421 (672)
T PHA02730        348 INYLHYGDMVSIPILRCMLD-----NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCM  421 (672)
T ss_pred             HHHHhcCCcCcHHHHHHHHH-----CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchH
Confidence            1111       244444444     46777765 689999999998875    8999999999984 3788899999999


Q ss_pred             HH---HHHhC---------CHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHH
Q 005095          445 HI---AVVHR---------QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKE  512 (715)
Q Consensus       445 h~---A~~~~---------~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~  512 (715)
                      |.   |...+         ..+++++|+++|++++    ++|..|+||||+|+..++.+                    .
T Consensus       422 h~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADIN----akD~~G~TPLh~Aa~~~~~e--------------------i  477 (672)
T PHA02730        422 YGLILSRFNNCGYHCYETILIDVFDILSKYMDDID----MIDNENKTLLYYAVDVNNIQ--------------------F  477 (672)
T ss_pred             hHHHHHHhccccccccchhHHHHHHHHHhcccchh----ccCCCCCCHHHHHHHhCCHH--------------------H
Confidence            94   33332         2357999999999988    59999999999999987643                    3


Q ss_pred             HHHhhc-chhHhhhhc-CCCCchhhhHHH
Q 005095          513 IEKVVQ-PSYREAKNS-EGRTPHILFSEE  539 (715)
Q Consensus       513 v~~ll~-~~~~~~~n~-~G~Tpl~~a~~~  539 (715)
                      ++.++. +++++.+|. .|.||+++|+..
T Consensus       478 ve~LI~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        478 ARRLLEYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             HHHHHHCCCCCCCCCCcCCcCHHHHHHHh
Confidence            344444 556688997 599999999763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.7e-41  Score=375.45  Aligned_cols=325  Identities=13%  Similarity=0.045  Sum_probs=219.9

Q ss_pred             cccccCCC-CCCcccccC-CCCCChHHHHHHH--cCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCC--HHHHHH
Q 005095          143 AVSLSQPG-AVSGGVERN-CFTSYAPLHLAAL--KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR--TLFVQE  216 (715)
Q Consensus       143 ~~~l~~~G-~~~~~~~~~-~~~g~T~Lh~Aa~--~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~--~~iv~~  216 (715)
                      ..++.+.| +   +++.. +..|.||||.|+.  +++.+++++|++.+. +++.+ |..|.||||+|++.|+  .++|++
T Consensus       158 Vk~LLe~G~A---DIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GA-DVN~k-D~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        158 IKYMVDVGIV---NLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGV-NVNLQ-NNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             HHHHHHCCCC---CcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCCCHHHHHH
Confidence            33477777 6   45555 7889999999865  468999999997754 55554 8999999999999995  599999


Q ss_pred             HHhcCCCcccccccCCCChHHHHHH-------------------------------------HcCcHHHHHHHHhcCCCC
Q 005095          217 LVNLMTPEDLALRNKVGNTALCFAA-------------------------------------VSGVTKIAEVMVNKNREL  259 (715)
Q Consensus       217 Ll~~~~g~~i~~~d~~G~TpLh~Aa-------------------------------------~~g~~~iv~~Ll~~g~~~  259 (715)
                      |++  .|+++|.+|..|+||||+|+                                     +.|+.+++++|+++|+++
T Consensus       233 LLe--~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        233 IIE--LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHH--cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            999  89999999999999999763                                     446677777777777776


Q ss_pred             CccCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCCCccccccccHHHHHHH--------------cCChhHHHHHHhhC
Q 005095          260 PSIRGNKGATPLCMAAL--LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID--------------AGLYDVALDLIQHH  323 (715)
Q Consensus       260 ~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~--------------~g~~~iv~~Ll~~~  323 (715)
                      + .+|..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||.|+.              .++.+++++|+++|
T Consensus       311 N-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 H-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             e-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            5 677777777777653  356777777777777777777777777777654              25677777777777


Q ss_pred             cccceecCCCCCCHHHHHH-hCCCCcccCcchhhHhhhhhcCCcc--h--------hccCCch--hHHHHHH----HHHH
Q 005095          324 PQLAMARDGNGETALHVLA-RKPSAFASGSQLGFWRRCIYSVPGM--R--------AILDPKL--MHLQALE----LVKR  386 (715)
Q Consensus       324 ~~~~~~~d~~g~tpLh~A~-~~~~~~~~~~~~~~~~~ll~~~~~~--~--------~~~~~~~--lh~a~~~----~~~~  386 (715)
                      +++ +.+|..|+||||.++ ...+    ....++++.|+......  .        ...+.+|  +|.++..    ....
T Consensus       390 ADI-n~kn~~G~TPLh~y~~~a~n----~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~  464 (764)
T PHA02716        390 ADI-TAVNCLGYTPLTSYICTAQN----YMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLY  464 (764)
T ss_pred             CCC-CCcCCCCCChHHHHHHHHHh----cChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhh
Confidence            774 677777777777321 1110    12356666666543210  0        0112222  2222211    0000


Q ss_pred             H-------------HHHHHhcCcccccccccCCchHHHHHHHcCCH-----HHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 005095          387 L-------------WEQVLLLDDSKIGELLRKPSRLLFTAVELGNV-----EFLMVLIQMYPNLIWKVDDHSRSMFHIAV  448 (715)
Q Consensus       387 l-------------~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~-----eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~  448 (715)
                      +             +.+.+...+.+++..|..|.||||+|+..|+.     |++++|++.|++ ++.+|.+|+||||+|+
T Consensus       465 ~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD-IN~~d~~G~TPLh~A~  543 (764)
T PHA02716        465 TDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN-INIPTKNGVTPLMLTM  543 (764)
T ss_pred             hhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC-CcccCCCCCCHHHHHH
Confidence            0             01112223445566677788888888877765     444788888877 6777888888888888


Q ss_pred             HhCCH-----HHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          449 VHRQE-----KIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       449 ~~~~~-----~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      ++|+.     ++|++|+++|++++.+          .|++|...++.+
T Consensus       544 ~~g~~~~~~~eIvk~LL~~ga~~~~~----------~l~~~~~~~~~~  581 (764)
T PHA02716        544 RNNRLSGHQWYIVKNILDKRPNVDIV----------IIFLDKCYANGK  581 (764)
T ss_pred             HcCCccccHHHHHHHHHhcCCCcchH----------HHHHHhhhhhhH
Confidence            77765     7788888877776642          366666555443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.6e-40  Score=372.93  Aligned_cols=334  Identities=13%  Similarity=0.073  Sum_probs=253.1

Q ss_pred             CCCCCChHHHHH-----HHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHH--cCCHHHHHHHHhcCCCcccccccC
Q 005095          159 NCFTSYAPLHLA-----ALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG--ARRTLFVQELVNLMTPEDLALRNK  231 (715)
Q Consensus       159 ~~~~g~T~Lh~A-----a~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~g~~i~~~d~  231 (715)
                      .+..+..+++..     .+.++.+++++|++.+..+++.+.|..|.||||+|+.  +++.++|++|++  +|++++.+|.
T Consensus       133 ~~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe--~GADVN~kD~  210 (764)
T PHA02716        133 PNNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN--NGVNVNLQNN  210 (764)
T ss_pred             CCcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH--cCCCCCCCCC
Confidence            333344555544     3568999999999887355655447889999999875  468999999999  8999999999


Q ss_pred             CCChHHHHHHHcCc--HHHHHHHHhcCCCCCccCCCCCCCHHHHH-----------------------------------
Q 005095          232 VGNTALCFAAVSGV--TKIAEVMVNKNRELPSIRGNKGATPLCMA-----------------------------------  274 (715)
Q Consensus       232 ~G~TpLh~Aa~~g~--~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A-----------------------------------  274 (715)
                      .|.||||+|++.|+  .++|++|+++|++++ .+|..|+||||+|                                   
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN-~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELGGDMD-MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            99999999999995  599999999999997 7999999999975                                   


Q ss_pred             --HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHH--cCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCc--
Q 005095          275 --ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID--AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF--  348 (715)
Q Consensus       275 --~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~--  348 (715)
                        ++.|+.+++++|+++|++++.+|.+|+||||+|+.  .++.+++++|+++|+++ +.+|..|+||||+|+......  
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~  368 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNI  368 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhcc
Confidence              45688899999999999999999999999998764  46789999999999986 899999999999987531100  


Q ss_pred             -----ccCcchhhHhhhhhcCC--cchhccCCchhHHHH--------HHHHHHHHHHHHhcCcc------cccccccCCc
Q 005095          349 -----ASGSQLGFWRRCIYSVP--GMRAILDPKLMHLQA--------LELVKRLWEQVLLLDDS------KIGELLRKPS  407 (715)
Q Consensus       349 -----~~~~~~~~~~~ll~~~~--~~~~~~~~~~lh~a~--------~~~~~~l~~~~l~~~~~------~~~~~~~~g~  407 (715)
                           ......++++.|+..+.  +.++..|.||||.++        .++++.|++........      ..+..+..+.
T Consensus       369 ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~  448 (764)
T PHA02716        369 LDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPC  448 (764)
T ss_pred             ccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchh
Confidence                 01135789999986654  566788999999421        46777777754221100      0112222333


Q ss_pred             hHHHHHHHcCCHH------------------HHHHHHHhCCCCccccCCCCCcHHHHHHHhCCH-----HHHHHHHHcCc
Q 005095          408 RLLFTAVELGNVE------------------FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQE-----KIFNLIYELGA  464 (715)
Q Consensus       408 t~Lh~A~~~g~~e------------------iv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~-----~iv~~Ll~~ga  464 (715)
                      . +|.++..++.+                  ++..++..+.+ ++..|..|+||||+|+..|+.     +++++|++.|+
T Consensus       449 ~-lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GA  526 (764)
T PHA02716        449 I-IHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQY  526 (764)
T ss_pred             h-HHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCC
Confidence            3 45555444433                  23333444555 677899999999999999877     45599999999


Q ss_pred             chhhhhcccCCCCchHHHHhhhhCCCC-------ccccCCCchhh
Q 005095          465 HKDLIASYKDENNNNMLHLAGKLAPPD-------RLKIDSGAALQ  502 (715)
Q Consensus       465 ~~~~l~~~~d~~G~TpLh~A~~~~~~~-------~l~l~~ga~~~  502 (715)
                      +++.    +|++|+||||+|+++|+.+       .++++.|+.++
T Consensus       527 DIN~----~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        527 NINI----PTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             CCcc----cCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            9984    9999999999999999752       24455555543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-40  Score=368.24  Aligned_cols=276  Identities=15%  Similarity=0.141  Sum_probs=191.5

Q ss_pred             HHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          168 HLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR---RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       168 h~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      ..++..++.++|++|++.+. +++.+ +..|.||||+|+..|   +.+++++|++  .|+++|.+|..|.||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga-~vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGA-DVNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCC-CcccC-CCCCCCHHHHHHHhcCCChHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcC
Confidence            45566677777777776543 34443 677777777777777   7777777777  67777777777777777777777


Q ss_pred             -cHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcC--ChhHHHHH
Q 005095          245 -VTKIAEVMVNKNRELPSIRGNKGATPLCMAA--LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG--LYDVALDL  319 (715)
Q Consensus       245 -~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g--~~~iv~~L  319 (715)
                       +.+++++|+++|++++ .+|..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.+++++|
T Consensus        95 ~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         95 TTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence             4777777777777775 67777777777777  455677777777777777777777777777777655  46777777


Q ss_pred             HhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccc
Q 005095          320 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  399 (715)
Q Consensus       320 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~  399 (715)
                      +++|++. +..|..|+||||+++.....     .                           .++++.|++.     ++++
T Consensus       174 l~~g~~~-~~~d~~g~t~Lh~~~~~~~~-----~---------------------------~~i~~~Ll~~-----g~~~  215 (471)
T PHA03095        174 IDAGADV-YAVDDRFRSLLHHHLQSFKP-----R---------------------------ARIVRELIRA-----GCDP  215 (471)
T ss_pred             HHcCCCC-cccCCCCCCHHHHHHHHCCC-----c---------------------------HHHHHHHHHc-----CCCC
Confidence            7777775 44477777777777764321     0                           1344444443     5556


Q ss_pred             cccccCCchHHHHHHHcCCH--HHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCC
Q 005095          400 GELLRKPSRLLFTAVELGNV--EFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN  477 (715)
Q Consensus       400 ~~~~~~g~t~Lh~A~~~g~~--eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G  477 (715)
                      +.+|..|.||||+|+..|+.  .+++.|++.|++ ++.+|..|+||||+|+..|+.+++++|+++|++++.    +|.+|
T Consensus       216 ~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~----~~~~g  290 (471)
T PHA03095        216 AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGADINA----VSSDG  290 (471)
T ss_pred             cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCC
Confidence            66666777777777776653  466667777776 566677777777777777777777777777777663    67777


Q ss_pred             chHHHHhhhhCCCC
Q 005095          478 NNMLHLAGKLAPPD  491 (715)
Q Consensus       478 ~TpLh~A~~~~~~~  491 (715)
                      +||||+|+..|+.+
T Consensus       291 ~tpl~~A~~~~~~~  304 (471)
T PHA03095        291 NTPLSLMVRNNNGR  304 (471)
T ss_pred             CCHHHHHHHhCCHH
Confidence            77777777766655

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=369.10  Aligned_cols=355  Identities=11%  Similarity=0.035  Sum_probs=268.8

Q ss_pred             CCcccccccCCCCCCcccccCCCCCChHHHHHHHcCCHH----HHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHH
Q 005095          139 FAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWD----FARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFV  214 (715)
Q Consensus       139 ~~~~~~~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~~----~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv  214 (715)
                      .......+...|+   +++..+..|+||||+|+..|+.+    +++.|++.++. .+.   .+..+++|+|+..|+.++|
T Consensus        47 ~~~~v~~Ll~~ga---~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~---~~~~~~~~~a~~~~~~e~v  119 (661)
T PHA02917         47 NVEVVKLLLDSGT---NPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNI---NDFNIFSYMKSKNVDVDLI  119 (661)
T ss_pred             cHHHHHHHHHCCC---CccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCC---CCcchHHHHHhhcCCHHHH
Confidence            3445555667787   45677888999999999999855    45667765443 111   1234778889999999999


Q ss_pred             HHHHhcCCCcccccccCCCChHHHHHH--HcCcHHHHHHHHhcCCCCCccCC---CCC-----------CCHHHHHHH--
Q 005095          215 QELVNLMTPEDLALRNKVGNTALCFAA--VSGVTKIAEVMVNKNRELPSIRG---NKG-----------ATPLCMAAL--  276 (715)
Q Consensus       215 ~~Ll~~~~g~~i~~~d~~G~TpLh~Aa--~~g~~~iv~~Ll~~g~~~~~~~d---~~g-----------~tpLh~A~~--  276 (715)
                      ++|++  +|+++|.+|.+|+||||+|+  ..|+.+++++|+++|++++ .+|   ..|           .||||+|+.  
T Consensus       120 k~Ll~--~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~  196 (661)
T PHA02917        120 KVLVE--HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDYQPRNCGTVLHLYIISH  196 (661)
T ss_pred             HHHHH--cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccHHHHHHhhc
Confidence            99999  89999999999999999654  5789999999999999986 343   234           599999986  


Q ss_pred             ---------cCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCCh--hHHHHHHhhCcccc---eecCCCCCCHHHHHH
Q 005095          277 ---------LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY--DVALDLIQHHPQLA---MARDGNGETALHVLA  342 (715)
Q Consensus       277 ---------~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~--~iv~~Ll~~~~~~~---~~~d~~g~tpLh~A~  342 (715)
                               .++.++|++|+++|+|+|.+|.+|.||||+|+.+|+.  +++++|++ |++..   ...|..|.+|+|+|+
T Consensus       197 ~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        197 LYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             ccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHH
Confidence                     4689999999999999999999999999999999986  79999975 76642   245677899999999


Q ss_pred             hCCCCccc--CcchhhHhhhhhcCCcch---------------------hccCCchhHHHH---------HHHHHHHHHH
Q 005095          343 RKPSAFAS--GSQLGFWRRCIYSVPGMR---------------------AILDPKLMHLQA---------LELVKRLWEQ  390 (715)
Q Consensus       343 ~~~~~~~~--~~~~~~~~~ll~~~~~~~---------------------~~~~~~~lh~a~---------~~~~~~l~~~  390 (715)
                      .-++.+..  .-..++++.|+..+....                     ...+.+++|...         .++++.|++.
T Consensus       276 yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~  355 (661)
T PHA02917        276 YLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEY  355 (661)
T ss_pred             HHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHc
Confidence            54322111  226789999998775321                     111222333222         2356666665


Q ss_pred             HHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHH-hCCCCccccCCCCCcHHHHHHHhC------------------
Q 005095          391 VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHR------------------  451 (715)
Q Consensus       391 ~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~-~~~d~~~~~d~~G~T~Lh~A~~~~------------------  451 (715)
                           +++++.++..|.++.    ...+.+++++|+. .|++..+. +.+|+||||.|++.+                  
T Consensus       356 -----GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~-~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~  425 (661)
T PHA02917        356 -----GAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNH-LDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDM  425 (661)
T ss_pred             -----CCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCcccc-CCCCCChhHHHHHhcccchhhhhhhhhhccchh
Confidence                 777777788887743    4677889999997 58875555 557999999998543                  


Q ss_pred             -----CHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-chhHhhh
Q 005095          452 -----QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAK  525 (715)
Q Consensus       452 -----~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~  525 (715)
                           ..+++++|+++|++++    ++|..|+||||+|+..++.+                    .++.++. +++++.+
T Consensus       426 ~~~~~~~~~v~~Ll~~GAdIN----~kd~~G~TpLh~Aa~~~~~~--------------------~v~~Ll~~GAdin~~  481 (661)
T PHA02917        426 SYACPILSTINICLPYLKDIN----MIDKRGETLLHKAVRYNKQS--------------------LVSLLLESGSDVNIR  481 (661)
T ss_pred             hhhhhhHHHHHHHHHCCCCCC----CCCCCCcCHHHHHHHcCCHH--------------------HHHHHHHCcCCCCCC
Confidence                 3567899999999998    59999999999999877533                    3444444 5667999


Q ss_pred             hcCCCCchhhhHH
Q 005095          526 NSEGRTPHILFSE  538 (715)
Q Consensus       526 n~~G~Tpl~~a~~  538 (715)
                      |..|+|||++|..
T Consensus       482 d~~G~T~L~~A~~  494 (661)
T PHA02917        482 SNNGYTCIAIAIN  494 (661)
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-39  Score=354.60  Aligned_cols=282  Identities=16%  Similarity=0.170  Sum_probs=244.8

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcC--------------
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM--------------  221 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~--------------  221 (715)
                      ++..+..|.||||.|+..|+.++|++|++.+.+ ++. .+..|.||||.|+..|+.+++++|++..              
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INH-INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            455677789999999999999999999987654 444 3788999999999999999999999821              


Q ss_pred             -------CCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Q 005095          222 -------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEED  294 (715)
Q Consensus       222 -------~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~  294 (715)
                             .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence                   235677889999999999999999999999999999986 789999999999999999999999999999999


Q ss_pred             ccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCc
Q 005095          295 LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPK  374 (715)
Q Consensus       295 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  374 (715)
                      ..+..|.||||.|+..|+.+++++|++.++++ +.++..|.||||.|+..+.                            
T Consensus       185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~----------------------------  235 (434)
T PHA02874        185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR----------------------------  235 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh----------------------------
Confidence            99999999999999999999999999999986 7889999999999998753                            


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcC-CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhC-C
Q 005095          375 LMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELG-NVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR-Q  452 (715)
Q Consensus       375 ~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g-~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~-~  452 (715)
                             +.+..|+      .+.+++.++..|.||||+|+..+ +.+++++|+++|++ ++.+|..|+||||+|++.+ +
T Consensus       236 -------~~i~~Ll------~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad-~n~~d~~g~TpL~~A~~~~~~  301 (434)
T PHA02874        236 -------SAIELLI------NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTAFKYINK  301 (434)
T ss_pred             -------HHHHHHH------cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHhCCc
Confidence                   3333332      36778889999999999999976 89999999999999 8999999999999999987 7


Q ss_pred             HHHHHHHHHcCcchhhhhcccCCCC-chHHHHhhhh
Q 005095          453 EKIFNLIYELGAHKDLIASYKDENN-NNMLHLAGKL  487 (715)
Q Consensus       453 ~~iv~~Ll~~ga~~~~l~~~~d~~G-~TpLh~A~~~  487 (715)
                      .++++.|++.+..++.    .+..+ .+++..+...
T Consensus       302 ~~~ik~ll~~~~~~~~----~~~~~~~~~~~~~~i~  333 (434)
T PHA02874        302 DPVIKDIIANAVLIKE----ADKLKDSDFLEHIEIK  333 (434)
T ss_pred             cHHHHHHHHhcCchhh----ccccchhHHHHHHHHh
Confidence            8899999999887653    34433 5566665443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=362.27  Aligned_cols=258  Identities=18%  Similarity=0.179  Sum_probs=153.5

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHH-----HHHcCCHHHHHHHHhcCCCcccccccC
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHI-----AAGARRTLFVQELVNLMTPEDLALRNK  231 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~-----Aa~~g~~~iv~~Ll~~~~g~~i~~~d~  231 (715)
                      +..+..+.||||.|+..|+.++|++|++.+.+ ++.. +..|.||||+     |+..|+.+++++|++  .|++++..|.
T Consensus        29 ~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~--~ga~i~~~d~  104 (480)
T PHA03100         29 DYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSS-TKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANVNAPDN  104 (480)
T ss_pred             hhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCc-cccCcCHHHHHHHHHHHhhchHHHHHHHHH--CCCCCCCCCC
Confidence            34455566666666666666666666655432 2222 5556666666     666666666666666  5666666666


Q ss_pred             CCChHHHHHH--HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCCCccccccccHHHHH
Q 005095          232 VGNTALCFAA--VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG--HKEMIWYLYSVTKEEDLKEEDRIELLVAV  307 (715)
Q Consensus       232 ~G~TpLh~Aa--~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  307 (715)
                      .|.||||+|+  ..|+.+++++|+++|++++ .++..|.||||+|+..|  +.+++++|+++|++++.++..|.||||.|
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A  183 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIA  183 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence            6666666666  6666666666666666654 55666666666666666  66666666666666666666666666666


Q ss_pred             HHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHH
Q 005095          308 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRL  387 (715)
Q Consensus       308 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l  387 (715)
                      +..|+.+++++|+++|++. +..+..|.+|+|.                                               
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~-----------------------------------------------  215 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADI-NAGDIETLLFTIF-----------------------------------------------  215 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHH-----------------------------------------------
Confidence            6666666666666666654 4555555222221                                               


Q ss_pred             HHHHHhcCcccccccccCCchHHHHHHHcCC--HHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 005095          388 WEQVLLLDDSKIGELLRKPSRLLFTAVELGN--VEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  465 (715)
Q Consensus       388 ~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~--~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  465 (715)
                                         .||||.|+..|+  .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       216 -------------------~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        216 -------------------ETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN  275 (480)
T ss_pred             -------------------HhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                               345555555555  5555555555555 455555555555555555555555555555555


Q ss_pred             hhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          466 KDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       466 ~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      ++.    +|..|+||||+|++.++.+
T Consensus       276 ~n~----~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        276 PNL----VNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             CCc----cCCCCCcHHHHHHHhCCHH
Confidence            542    5555555555555555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-39  Score=361.22  Aligned_cols=258  Identities=20%  Similarity=0.247  Sum_probs=230.3

Q ss_pred             CcccccccCCCCCC---------cccccCCCCCChHHHH-----HHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHH
Q 005095          140 AQPAVSLSQPGAVS---------GGVERNCFTSYAPLHL-----AALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIA  205 (715)
Q Consensus       140 ~~~~~~l~~~G~~~---------~~~~~~~~~g~T~Lh~-----Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~A  205 (715)
                      .+|++.|+..|...         .+++..+..|.||||.     |+..|+.++++.|++.++.. +. .|..|.||||+|
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~-~d~~g~tpL~~A  113 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NA-PDNNGITPLLYA  113 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CC-CCCCCCchhhHH
Confidence            34566655555532         2566778889999999     99999999999999876654 44 489999999999


Q ss_pred             H--HcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC--cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Q 005095          206 A--GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG--VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE  281 (715)
Q Consensus       206 a--~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~  281 (715)
                      +  ..|+.+++++|++  .|++++.+|..|.||||+|+..|  +.+++++|+++|++++ .++..|.||||+|+..|+.+
T Consensus       114 ~~~~~~~~~iv~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din-~~d~~g~tpL~~A~~~~~~~  190 (480)
T PHA03100        114 ISKKSNSYSIVEYLLD--NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN-AKNRYGYTPLHIAVEKGNID  190 (480)
T ss_pred             HhcccChHHHHHHHHH--cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc-cccCCCCCHHHHHHHhCCHH
Confidence            9  9999999999999  89999999999999999999999  9999999999999986 78889999999999999999


Q ss_pred             HHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhh
Q 005095          282 MIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCI  361 (715)
Q Consensus       282 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll  361 (715)
                      ++++|+++|++++..+..|.+|++.                            .||||.|+..++.              
T Consensus       191 iv~~Ll~~ga~~~~~~~~~~~~~~~----------------------------~t~l~~a~~~~~~--------------  228 (480)
T PHA03100        191 VIKFLLDNGADINAGDIETLLFTIF----------------------------ETPLHIAACYNEI--------------  228 (480)
T ss_pred             HHHHHHHcCCCccCCCCCCCcHHHH----------------------------HhHHHHHHHhCcC--------------
Confidence            9999999999999999999999887                            7999999998751              


Q ss_pred             hcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q 005095          362 YSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR  441 (715)
Q Consensus       362 ~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~  441 (715)
                                        ..++++.|++.     +.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus       229 ------------------~~~iv~~Ll~~-----g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~  284 (480)
T PHA03100        229 ------------------TLEVVNYLLSY-----GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGD  284 (480)
T ss_pred             ------------------cHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCC
Confidence                              02666777665     667788889999999999999999999999999998 889999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCcchhh
Q 005095          442 SMFHIAVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       442 T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                      ||||+|+.+++.+++++|+++|++++.
T Consensus       285 tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        285 TPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            999999999999999999999999885

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.7e-39  Score=357.75  Aligned_cols=279  Identities=20%  Similarity=0.158  Sum_probs=248.1

Q ss_pred             cccccCCCCCCcccccCCCCCChHHHHHHHcC---CHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcC-CHHHHHHHH
Q 005095          143 AVSLSQPGAVSGGVERNCFTSYAPLHLAALKG---DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR-RTLFVQELV  218 (715)
Q Consensus       143 ~~~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g-~~~iv~~Ll  218 (715)
                      +..+.+.|+   +++..+..|.||||+|+..|   +.++++.|++.+. +++.+ +..|.||||+|+..| +.+++++|+
T Consensus        30 v~~Ll~~ga---~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-din~~-~~~g~TpLh~A~~~~~~~~iv~lLl  104 (471)
T PHA03095         30 VRRLLAAGA---DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-DVNAP-ERCGFTPLHLYLYNATTLDVIKLLI  104 (471)
T ss_pred             HHHHHHcCC---CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCcHHHHHHHH
Confidence            334667787   46777888999999999999   9999999997765 45554 789999999999999 599999999


Q ss_pred             hcCCCcccccccCCCChHHHHHH--HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCCC
Q 005095          219 NLMTPEDLALRNKVGNTALCFAA--VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG--HKEMIWYLYSVTKEED  294 (715)
Q Consensus       219 ~~~~g~~i~~~d~~G~TpLh~Aa--~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~ga~~~  294 (715)
                      +  +|++++.+|..|+||||+|+  ..++.+++++|+++|++++ .+|..|.||||+|+..+  +.+++++|+++|++++
T Consensus       105 ~--~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~  181 (471)
T PHA03095        105 K--AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY  181 (471)
T ss_pred             H--cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc
Confidence            9  89999999999999999999  5568999999999999986 78999999999999876  6899999999999999


Q ss_pred             ccccccccHHHHHHHc--CChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccC
Q 005095          295 LKEEDRIELLVAVIDA--GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILD  372 (715)
Q Consensus       295 ~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  372 (715)
                      ..+..|.||||.|+..  ++.++++.|++.|++. +.+|..|+||||+|+..++..                        
T Consensus       182 ~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~------------------------  236 (471)
T PHA03095        182 AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCK------------------------  236 (471)
T ss_pred             ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCch------------------------
Confidence            9999999999999875  7789999999999995 899999999999999987510                        


Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCC
Q 005095          373 PKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ  452 (715)
Q Consensus       373 ~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~  452 (715)
                              ...++.+++     .+.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+
T Consensus       237 --------~~~v~~ll~-----~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~  302 (471)
T PHA03095        237 --------RSLVLPLLI-----AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNN  302 (471)
T ss_pred             --------HHHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCC
Confidence                    123344444     3778888999999999999999999999999999999 88999999999999999999


Q ss_pred             HHHHHHHHHcCcchhh
Q 005095          453 EKIFNLIYELGAHKDL  468 (715)
Q Consensus       453 ~~iv~~Ll~~ga~~~~  468 (715)
                      .+++++|++++++++.
T Consensus       303 ~~~v~~LL~~~~~~~~  318 (471)
T PHA03095        303 GRAVRAALAKNPSAET  318 (471)
T ss_pred             HHHHHHHHHhCCCHHH
Confidence            9999999999999875

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=359.84  Aligned_cols=362  Identities=11%  Similarity=0.014  Sum_probs=269.6

Q ss_pred             cccCCCCCChHHHHHHHc---CCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHH----HHHHHHhcCCCccccc
Q 005095          156 VERNCFTSYAPLHLAALK---GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTL----FVQELVNLMTPEDLAL  228 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~---g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~----iv~~Ll~~~~g~~i~~  228 (715)
                      ++..|.+|+||||+||..   |+.++|+.||+.+. +++.+ +..|+||||+|+..|+.+    +++.|++  .+...+.
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga-~v~~~-~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~--~~~~~n~  100 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGT-NPLHK-NWRQLTPLEEYTNSRHVKVNKDIAMALLE--ATGYSNI  100 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCC-Ccccc-CCCCCCHHHHHHHcCChhHHHHHHHHHHh--ccCCCCC
Confidence            356688899999998655   88999999998665 44554 899999999999999955    5577877  4333444


Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCCCcccc---cc---
Q 005095          229 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA--LLGHKEMIWYLYSVTKEEDLKEE---DR---  300 (715)
Q Consensus       229 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~ga~~~~~~~---~g---  300 (715)
                      .+  ..+++|.|+.+|+.++|++|+++|++++ .+|.+|.||||.|+  ..|+.++|++|+++|++++.+|.   .|   
T Consensus       101 ~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917        101 ND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             CC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence            33  3478888999999999999999999997 89999999999654  57899999999999999987653   23   


Q ss_pred             --------ccHHHHHHH-----------cCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhh
Q 005095          301 --------IELLVAVID-----------AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCI  361 (715)
Q Consensus       301 --------~t~L~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll  361 (715)
                              .||||+|+.           .++.+++++|+++|+++ +.+|.+|+||||+|+..|+.     ..++++.|+
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~-----~~eivk~Li  251 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHI-----DIDIVKLLM  251 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCC-----cHHHHHHHH
Confidence                    599999986           46899999999999996 89999999999999999862     357899887


Q ss_pred             hcCC-----cchhccCCchhHHHH-------------HHHHHHHHHHHHhcCcc------cccc--------cccCCchH
Q 005095          362 YSVP-----GMRAILDPKLMHLQA-------------LELVKRLWEQVLLLDDS------KIGE--------LLRKPSRL  409 (715)
Q Consensus       362 ~~~~-----~~~~~~~~~~lh~a~-------------~~~~~~l~~~~l~~~~~------~~~~--------~~~~g~t~  409 (715)
                      ....     ...+..+.+++|.++             .++++.|++.+......      ..+.        ....+.++
T Consensus       252 ~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (661)
T PHA02917        252 KGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVL  331 (661)
T ss_pred             hCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHH
Confidence            5321     134455667777776             25688888876432100      0011        12234455


Q ss_pred             HHHHH---HcCC--HHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH-cCcchhhhhcccCCCCchHHHH
Q 005095          410 LFTAV---ELGN--VEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHL  483 (715)
Q Consensus       410 Lh~A~---~~g~--~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~l~~~~d~~G~TpLh~  483 (715)
                      +|.+.   ..|.  .+++++|+++|++ ++.++..|.|+.    ...+.+++++|+. .|++++    .+|.+|+||||.
T Consensus       332 ~~~l~~~~~~g~~~~~~v~~Ll~~GAd-vn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~----~~~~~G~TpL~~  402 (661)
T PHA02917        332 QHILIEYMTFGDIDIPLVECMLEYGAV-VNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAV----NHLDDGEIPIGH  402 (661)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHcCCC-CCCCCccccchh----hcCCHHHHHHHHHhcCCCcc----ccCCCCCChhHH
Confidence            55444   4676  5699999999999 788899999864    3667888888887 588866    367789999999


Q ss_pred             hhhhCCC--Cc--cccCCCchhhhHHHhhhHHHHHHhhc-chhHhhhhcCCCCchhhhHHHh
Q 005095          484 AGKLAPP--DR--LKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSEGRTPHILFSEEH  540 (715)
Q Consensus       484 A~~~~~~--~~--l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~Tpl~~a~~~~  540 (715)
                      |++.+..  +.  .....|. .++.+.....+.++.+++ +++++.+|..|+||||+|+...
T Consensus       403 a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~  463 (661)
T PHA02917        403 LCKSNYGCYNFYTYTYKKGL-CDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYN  463 (661)
T ss_pred             HHHhcccchhhhhhhhhhcc-chhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcC
Confidence            9876542  11  1111221 112222224567777777 7799999999999999998654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.1e-38  Score=363.38  Aligned_cols=349  Identities=21%  Similarity=0.222  Sum_probs=218.5

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      ++...|..|.||||.|+..|+.+++++++.++... +.. +..|.||||.||..+..+++++|++  .|+++..++....
T Consensus       234 dv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~-~~~-~vr~~tplh~AA~~~~~e~~~~ll~--~ga~~~~~~~~~k  309 (1143)
T KOG4177|consen  234 DVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASV-NVS-TVRGETPLHMAARAGQVEVCKLLLQ--NGADVLAKARDDQ  309 (1143)
T ss_pred             cCCcccccCccHHHHHHhccchhHHHHHHhccccc-Ccc-cccccCcchhhhccchhhhHhhhhc--cCccccccccccc
Confidence            66777888888888888888888888888665543 332 7788888888888888888888888  7888877777777


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChh
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  314 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  314 (715)
                      ||+|.|.+.|+.++++++++.++..+ ..+..|.||||+++..++.++..+|.+.+..-...+..|.||+|.|+..|..+
T Consensus       310 t~l~~a~~~g~~~i~~~~l~~~~~~~-aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~  388 (1143)
T KOG4177|consen  310 TPLHIASRLGHEEIVHLLLQAGATPN-AARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVS  388 (1143)
T ss_pred             ChhhhhcccchHHHHHHHhhccCCcc-ccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchh
Confidence            77777777777777777777766654 45555555555555555555555555554444444555555555555555555


Q ss_pred             HHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhh--hcCCcchhccCCchhHHHHHHHHHHHHHHHH
Q 005095          315 VALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCI--YSVPGMRAILDPKLMHLQALELVKRLWEQVL  392 (715)
Q Consensus       315 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l  392 (715)
                      ++++++.++.+ ++..+.+|.||||.|+..++       ..+++.++  .+.++..+..|.|++|.++...-.......+
T Consensus       389 ~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~-------~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l  460 (1143)
T KOG4177|consen  389 VVELLLEAGAD-PNSAGKNGVTPLHVAAHYGN-------PRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLL  460 (1143)
T ss_pred             HHHhhhhccCC-cccCCCCCcceeeehhhccC-------cceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhH
Confidence            55555555555 35555555555555555543       22233332  2334444455555555555433111111222


Q ss_pred             hcCcccccccccCCchHHHHHHHcCCHHHHH---------------------------------HHHHhCCCCccccCCC
Q 005095          393 LLDDSKIGELLRKPSRLLFTAVELGNVEFLM---------------------------------VLIQMYPNLIWKVDDH  439 (715)
Q Consensus       393 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~---------------------------------~Ll~~~~d~~~~~d~~  439 (715)
                      ...+.+++.....|.||||+|++.|+.++++                                 .++++|++ ++.++..
T Consensus       461 ~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r  539 (1143)
T KOG4177|consen  461 LQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGR  539 (1143)
T ss_pred             hhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhccc
Confidence            2234444444444444444444444444444                                 44444444 4566777


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-
Q 005095          440 SRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-  518 (715)
Q Consensus       440 G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-  518 (715)
                      |.||||+|+.+|+.++|++|+++|+|++    ++|+.|+||||.|+..|+.+                    .++.+++ 
T Consensus       540 ~~TpLh~A~~~g~v~~VkfLLe~gAdv~----ak~~~G~TPLH~Aa~~G~~~--------------------i~~LLlk~  595 (1143)
T KOG4177|consen  540 GYTPLHVAVHYGNVDLVKFLLEHGADVN----AKDKLGYTPLHQAAQQGHND--------------------IAELLLKH  595 (1143)
T ss_pred             ccchHHHHHhcCCchHHHHhhhCCcccc----ccCCCCCChhhHHHHcChHH--------------------HHHHHHHc
Confidence            8888888888888888888888888877    47888888888888887644                    2333333 


Q ss_pred             chhHhhhhcCCCCchhhhHHHhh
Q 005095          519 PSYREAKNSEGRTPHILFSEEHR  541 (715)
Q Consensus       519 ~~~~~~~n~~G~Tpl~~a~~~~~  541 (715)
                      ++.+|..|.+|.|||++|....+
T Consensus       596 GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  596 GASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             CCCCCcccccCcchhHHHHHhcc
Confidence            44557777778888877766543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-37  Score=340.04  Aligned_cols=346  Identities=10%  Similarity=0.011  Sum_probs=265.1

Q ss_pred             ccccccCCCCCCcccccCCCCCChHHHHHHHcC--CHHHHHHHHhhCccchhhccCCCCCcHHHHHHH--cCCHHHHHHH
Q 005095          142 PAVSLSQPGAVSGGVERNCFTSYAPLHLAALKG--DWDFARNFFNLNPEAVCVRISRNQDTALHIAAG--ARRTLFVQEL  217 (715)
Q Consensus       142 ~~~~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~--~g~~~iv~~L  217 (715)
                      .+.++...|+   +++.+|..|+||||+|+..|  +.++|++|++.+........+..+++|||.++.  +++.++|++|
T Consensus        59 ivklLLs~GA---din~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~L  135 (672)
T PHA02730         59 IVRLLLSRGV---ERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYL  135 (672)
T ss_pred             HHHHHHhCCC---CCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHH
Confidence            4444566677   56788899999999999977  799999999886543223246779999999998  9999999999


Q ss_pred             HhcCCCcccccccC-----CCChHHHHHHHcCcHHHHHHHHhcCCCCCcc------CCCCCC-CHHHHH------HHcCC
Q 005095          218 VNLMTPEDLALRNK-----VGNTALCFAAVSGVTKIAEVMVNKNRELPSI------RGNKGA-TPLCMA------ALLGH  279 (715)
Q Consensus       218 l~~~~g~~i~~~d~-----~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~------~d~~g~-tpLh~A------~~~g~  279 (715)
                      ++. .+.+++..++     .|.+|+++|...++.|||++|+++|++++..      .+..+. |.||++      ..+++
T Consensus       136 i~~-~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~  214 (672)
T PHA02730        136 IVD-KRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLS  214 (672)
T ss_pred             HHh-cCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccC
Confidence            963 5678776533     7999999999999999999999999998411      333344 455533      45678


Q ss_pred             HHHHHHHHhcCCCCCccccccccHHHH--HHHcCChhHHHHHHh--------------------------------hCcc
Q 005095          280 KEMIWYLYSVTKEEDLKEEDRIELLVA--VIDAGLYDVALDLIQ--------------------------------HHPQ  325 (715)
Q Consensus       280 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~--A~~~g~~~iv~~Ll~--------------------------------~~~~  325 (715)
                      .|++++|+++|+++|.+|.+|.||||+  +...|+.|++++|++                                ++.+
T Consensus       215 ~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  294 (672)
T PHA02730        215 KDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD  294 (672)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcc
Confidence            999999999999999999999999995  555677999999999                                4555


Q ss_pred             ccee--------------------cCCCCCC---------------------HHHHHHhCCCCcccCcchhhHhhhhhcC
Q 005095          326 LAMA--------------------RDGNGET---------------------ALHVLARKPSAFASGSQLGFWRRCIYSV  364 (715)
Q Consensus       326 ~~~~--------------------~d~~g~t---------------------pLh~A~~~~~~~~~~~~~~~~~~ll~~~  364 (715)
                      . ..                    .+..|.+                     .||.=.+.+.    --..++++.|+..+
T Consensus       295 ~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~----~v~ieIvelLIs~G  369 (672)
T PHA02730        295 M-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD----MVSIPILRCMLDNG  369 (672)
T ss_pred             h-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC----cCcHHHHHHHHHCC
Confidence            3 22                    3444543                     4444444331    13678899998666


Q ss_pred             Ccch-hccCCchhHHHHH--------HHHHHHHHHHHhcCcccccccccCCchHHHH---HHHcC---------CHHHHH
Q 005095          365 PGMR-AILDPKLMHLQAL--------ELVKRLWEQVLLLDDSKIGELLRKPSRLLFT---AVELG---------NVEFLM  423 (715)
Q Consensus       365 ~~~~-~~~~~~~lh~a~~--------~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~---A~~~g---------~~eiv~  423 (715)
                      .++. ...|.||||.++.        ++++.|++++.   +.+++.+|..|.||||.   |...+         ..++++
T Consensus       370 AdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga---~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        370 ATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNG---HMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCC---CccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            5432 2688999998863        56666666421   12678888999999994   33332         236799


Q ss_pred             HHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCC-CCchHHHHhhhh--CCCC--ccccCCC
Q 005095          424 VLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDE-NNNNMLHLAGKL--APPD--RLKIDSG  498 (715)
Q Consensus       424 ~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~-~G~TpLh~A~~~--~~~~--~l~l~~g  498 (715)
                      +|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++++.    +|. .|+||||+|+..  ++.+  .+++..|
T Consensus       447 ~LIs~GAD-INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~----~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~g  521 (672)
T PHA02730        447 ILSKYMDD-IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT----TSRSIINTAIQKSSYRRENKTKLVDLLLSYH  521 (672)
T ss_pred             HHHhcccc-hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC----CCCcCCcCHHHHHHHhhcCcHHHHHHHHHcC
Confidence            99999999 899999999999999999999999999999999984    886 599999999974  3333  4667888


Q ss_pred             chhhhH
Q 005095          499 AALQLR  504 (715)
Q Consensus       499 a~~~~~  504 (715)
                      +.++.-
T Consensus       522 a~i~~I  527 (672)
T PHA02730        522 PTLETM  527 (672)
T ss_pred             CCHHHH
Confidence            877643

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-37  Score=343.01  Aligned_cols=274  Identities=15%  Similarity=0.111  Sum_probs=230.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHH
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      ....+.||||+||..|+.++|++|++.+. +++.. |.+|.||||+||..|+.++++.|++  .+.+.+.  ..+.+|||
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~ga-dvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~--~~~~~~~--~~~~~~l~  106 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGH-NVNQP-DHRDLTPLHIICKEPNKLGMKEMIR--SINKCSV--FYTLVAIK  106 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHCccHhHHHHHHH--HHhcccc--ccchhhHH
Confidence            34567899999999999999999998754 45554 8999999999999999999999999  4544333  56889999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHHHhcCCCCCccccc-cccHHHHHHHcCChhH
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL--GHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDV  315 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~i  315 (715)
                      .|+..|+.+++++|+..+.+.....+   ...+..+...  .+.+++++|+++|++++..+.. |.||||+|+..|+.++
T Consensus       107 ~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~i  183 (477)
T PHA02878        107 DAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRL  183 (477)
T ss_pred             HHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHH
Confidence            99999999999999988654321111   1111111122  2356999999999999999999 9999999999999999


Q ss_pred             HHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcC
Q 005095          316 ALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD  395 (715)
Q Consensus       316 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~  395 (715)
                      +++|++.|+++ +.+|..|+||||.|+..++                                  .++++.|++.     
T Consensus       184 v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~----------------------------------~~iv~~Ll~~-----  223 (477)
T PHA02878        184 TELLLSYGANV-NIPDKTNNSPLHHAVKHYN----------------------------------KPIVHILLEN-----  223 (477)
T ss_pred             HHHHHHCCCCC-CCcCCCCCCHHHHHHHhCC----------------------------------HHHHHHHHHc-----
Confidence            99999999996 8899999999999999876                                  3677777765     


Q ss_pred             cccccccccCCchHHHHHHHc-CCHHHHHHHHHhCCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhccc
Q 005095          396 DSKIGELLRKPSRLLFTAVEL-GNVEFLMVLIQMYPNLIWKVDD-HSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYK  473 (715)
Q Consensus       396 ~~~~~~~~~~g~t~Lh~A~~~-g~~eiv~~Ll~~~~d~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~  473 (715)
                      +++++.+|..|.||||+|+.. ++.+++++|+++|++ ++.++. .|+||||+|  .++.+++++|+++|+|++.    +
T Consensus       224 ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~----~  296 (477)
T PHA02878        224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS----L  296 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC----c
Confidence            677888899999999999976 799999999999999 666664 899999999  5788999999999999985    9


Q ss_pred             CCCCchHHHHhhhhC
Q 005095          474 DENNNNMLHLAGKLA  488 (715)
Q Consensus       474 d~~G~TpLh~A~~~~  488 (715)
                      |..|+||||+|++.+
T Consensus       297 d~~g~TpL~~A~~~~  311 (477)
T PHA02878        297 NSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCCCCCHHHHHHHHc
Confidence            999999999999854

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-37  Score=345.50  Aligned_cols=271  Identities=16%  Similarity=0.098  Sum_probs=225.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      +..+.||||+|++.|+.++|++|++  .|++++.+|..|.||||+||..|+.++++.|++.+.+.. .  ..+.+||+.|
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~--~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~-~--~~~~~~l~~a  108 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLT--RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS-V--FYTLVAIKDA  108 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc-c--ccchhhHHHH
Confidence            4568899999999999999999999  899999999999999999999999999999999887653 2  5788999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcC--ChhHHHHHHhhCcccceecCCC-CCCHHHHHHhCCCCcccC
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMARDGN-GETALHVLARKPSAFASG  351 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~-g~tpLh~A~~~~~~~~~~  351 (715)
                      +..++.+++++|+..+.+.+....  ...+......+  ..+++++|+++|+++ +.++.+ |+||||+|+..|+     
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~-----  180 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKD-----  180 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCC-----
Confidence            999999999999988654322110  01111111122  345999999999996 788888 9999999999986     


Q ss_pred             cchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 005095          352 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN  431 (715)
Q Consensus       352 ~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d  431 (715)
                                                   .++++.|++.     +++++..+..|.||||.|++.|+.+++++|+++|++
T Consensus       181 -----------------------------~~iv~~Ll~~-----gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        181 -----------------------------QRLTELLLSY-----GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             -----------------------------HHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence                                         3777777765     677888889999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHh-CCHHHHHHHHHcCcchhhhhcccCC-CCchHHHHhhhhCCCCccccCCCchhhhHHHhhh
Q 005095          432 LIWKVDDHSRSMFHIAVVH-RQEKIFNLIYELGAHKDLIASYKDE-NNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHW  509 (715)
Q Consensus       432 ~~~~~d~~G~T~Lh~A~~~-~~~~iv~~Ll~~ga~~~~l~~~~d~-~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~  509 (715)
                       ++.+|..|+||||+|+.. ++.+++++|+++|++++.    ++. .|+||||+|+...                     
T Consensus       227 -in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~----~~~~~g~TpLh~A~~~~---------------------  280 (477)
T PHA02878        227 -TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA----KSYILGLTALHSSIKSE---------------------  280 (477)
T ss_pred             -CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc----cCCCCCCCHHHHHccCH---------------------
Confidence             889999999999999976 799999999999999984    664 8999999994321                     


Q ss_pred             HHHHHHhhc-chhHhhhhcCCCCchhhhHHH
Q 005095          510 FKEIEKVVQ-PSYREAKNSEGRTPHILFSEE  539 (715)
Q Consensus       510 ~~~v~~ll~-~~~~~~~n~~G~Tpl~~a~~~  539 (715)
                       +.++.++. +++++.+|.+|+||+++|.+.
T Consensus       281 -~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        281 -RKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             -HHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence             12344444 567799999999999999874

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.5e-38  Score=359.25  Aligned_cols=322  Identities=23%  Similarity=0.259  Sum_probs=237.1

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      .++..+.+|.||||.||..+..+++++|++++.+. .. .+....||+|+|...|+.++++.+++  .++.+++.+..|.
T Consensus       267 ~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~-~~-~~~~~kt~l~~a~~~g~~~i~~~~l~--~~~~~~aar~~g~  342 (1143)
T KOG4177|consen  267 SVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADV-LA-KARDDQTPLHIASRLGHEEIVHLLLQ--AGATPNAARTAGY  342 (1143)
T ss_pred             ccCcccccccCcchhhhccchhhhHhhhhccCccc-cc-ccccccChhhhhcccchHHHHHHHhh--ccCCccccCcCCc
Confidence            56667777888888888888888888888665442 33 36677788888888888888888777  6777777777777


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChh
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  314 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  314 (715)
                      ||||+++..++.+++.+|.+.++.-. ..+..|.||+|.|+..|..+++++++++|++++..+..|.||||.|+..++.+
T Consensus       343 t~lHlaa~~~~~~~~~~l~~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~  421 (1143)
T KOG4177|consen  343 TPLHLAAKEGQVEVAGALLEHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPR  421 (1143)
T ss_pred             ccccHhhhhhhHHHHHHhhccccccC-cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcc
Confidence            77777777777776666666666553 56667777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhh--hhcCCcchhccCCchhHHHHH----HHHHHHH
Q 005095          315 VALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRC--IYSVPGMRAILDPKLMHLQAL----ELVKRLW  388 (715)
Q Consensus       315 iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~~~~lh~a~~----~~~~~l~  388 (715)
                      +++.+++++++. +..+..|.||+|+|+..|.      ..+....+  ....++.....|.||||.++.    +.++.++
T Consensus       422 ~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~------~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~lll  494 (1143)
T KOG4177|consen  422 VVKLLLKRGASP-NAKAKLGYTPLHVAAKKGR------YLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLL  494 (1143)
T ss_pred             eEEEEeccCCCh-hhHhhcCCChhhhhhhccc------HhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhh
Confidence            777777776664 6667777777777776652      12222222  233444444555555555542    2222222


Q ss_pred             H----------------------------HHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC
Q 005095          389 E----------------------------QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS  440 (715)
Q Consensus       389 ~----------------------------~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G  440 (715)
                      +                            ..+...+.+++.++..|.||||.||..|+.++|++|+++|+| ++.+|+.|
T Consensus       495 e~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~~~G  573 (1143)
T KOG4177|consen  495 EGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKDKLG  573 (1143)
T ss_pred             hcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc-ccccCCCC
Confidence            1                            122334778888899999999999999999999999999999 78889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCcc
Q 005095          441 RSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL  493 (715)
Q Consensus       441 ~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l  493 (715)
                      +||||.|+..|+.+|+++|+++|+++|    +.|.+|.||||+|+..|+.+.+
T Consensus       574 ~TPLH~Aa~~G~~~i~~LLlk~GA~vn----a~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  574 YTPLHQAAQQGHNDIAELLLKHGASVN----AADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             CChhhHHHHcChHHHHHHHHHcCCCCC----cccccCcchhHHHHHhcccchh
Confidence            999999999999999999999999998    5999999999999999987743

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.8e-37  Score=310.73  Aligned_cols=235  Identities=14%  Similarity=0.077  Sum_probs=183.6

Q ss_pred             cCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHH
Q 005095          173 KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM  252 (715)
Q Consensus       173 ~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~L  252 (715)
                      .++.+++++|++.+..   . +|.+|+||||+|+..|+.+++++|++  .|++++.++  |+||||+|+..|+.+++++|
T Consensus         9 ~~~~~~~~~Lis~~a~---~-~D~~G~TpLh~Aa~~g~~eiv~~Ll~--~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---K-ADVHGHSALYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHhCCCC---C-CCCCCCcHHHHHHHcCCHHHHHHHHH--CcCCCcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            4567888888875442   2 48889999999999999999999999  788887764  68999999999999999999


Q ss_pred             HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccc-ccHHHHHHHcCChhHHHHHHhhCcccceecC
Q 005095          253 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-IELLVAVIDAGLYDVALDLIQHHPQLAMARD  331 (715)
Q Consensus       253 l~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d  331 (715)
                      +++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|++++++.   .|
T Consensus        81 L~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d  156 (284)
T PHA02791         81 LFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FD  156 (284)
T ss_pred             HHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cc
Confidence            99999886 788899999999999999999999999999998888887 48999999999999999999887653   12


Q ss_pred             -CCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchH-
Q 005095          332 -GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRL-  409 (715)
Q Consensus       332 -~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~-  409 (715)
                       ..|.||||+|+..|+                                  .++++.|++.     +++++.++..|.|| 
T Consensus       157 ~~~g~TpLh~Aa~~g~----------------------------------~eiv~lLL~~-----gAd~n~~d~~g~t~~  197 (284)
T PHA02791        157 LAILLSCIHITIKNGH----------------------------------VDMMILLLDY-----MTSTNTNNSLLFIPD  197 (284)
T ss_pred             cccCccHHHHHHHcCC----------------------------------HHHHHHHHHC-----CCCCCcccCCCCChH
Confidence             246777777777765                                  2555555554     45555666666655 


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcch
Q 005095          410 LFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  466 (715)
Q Consensus       410 Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~  466 (715)
                      ||+|+..|+.++|++|+++|++ ++.+|..| ++|      ++.|++++|+++.++.
T Consensus       198 L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        198 IKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            7777777777777777777777 56666643 554      6777777777766553

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.3e-37  Score=310.09  Aligned_cols=184  Identities=21%  Similarity=0.233  Sum_probs=164.2

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhc-------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR-------ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK  231 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~-------~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~  231 (715)
                      .+.+|.|||.+||++||.++|++|+++....+...       ...+|.+||..|+..||+++|+.|++  +|+++|....
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~--~ga~VN~tT~  115 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR--RGASVNDTTR  115 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH--hcCccccccc
Confidence            34557799999999999999999998655433221       23568899999999999999999999  7899999888


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcC
Q 005095          232 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  311 (715)
Q Consensus       232 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  311 (715)
                      ...|||--||.-|+.++||+|+++|+|+. +.|..|.|.||+||.+||.+++++|++.|+|+|.++..|.|+||.|++.|
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcc
Confidence            88999999999999999999999999986 89999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCC
Q 005095          312 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSA  347 (715)
Q Consensus       312 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~  347 (715)
                      +.|++++|+++++.+  .+|..|.|||..|+..|..
T Consensus       195 ~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             cHHHHHHHHhCCcee--eecCCCCchHHHHhhhcch
Confidence            999999999999975  5788899999999998864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-37  Score=275.78  Aligned_cols=178  Identities=20%  Similarity=0.159  Sum_probs=155.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      +.++.+.+|......-++.++++.+..++.+.|.+|+||||+||..||.++|++|++. .+..+|.+|..|+||||.||.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhhh
Confidence            4578888888888888888998888778887677999999999999999999999964 788888899999999999999


Q ss_pred             cCcHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHh
Q 005095          243 SGVTKIAEVMVNK-NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  321 (715)
Q Consensus       243 ~g~~~iv~~Ll~~-g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  321 (715)
                      .|+.|+|+.|+.+ |++++ ..++.|.||||+|+.+|..|++++|+++|+.++.+|..|.||||.|+.-|.++++++|+.
T Consensus        82 ~g~~evVk~Ll~r~~advn-a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADVN-ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             cCcHHHHHHHhcCCCCCcc-eecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            9999999999988 88886 788889999999999999999999999999999999999999999999999999999988


Q ss_pred             hCcccceecCCCCCCHHHHHHh
Q 005095          322 HHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       322 ~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      .++.+ |.+|+.|+||||.|..
T Consensus       161 ~~a~~-n~qDk~G~TpL~~al~  181 (226)
T KOG4412|consen  161 QGAPL-NTQDKYGFTPLHHALA  181 (226)
T ss_pred             cCCCC-CcccccCccHHHHHHh
Confidence            88775 7778888877777743

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-36  Score=337.04  Aligned_cols=280  Identities=15%  Similarity=0.157  Sum_probs=220.5

Q ss_pred             cccccCCCCCCcccccCCCCCChHHHHHHHc--CCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcC------CHHHH
Q 005095          143 AVSLSQPGAVSGGVERNCFTSYAPLHLAALK--GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR------RTLFV  214 (715)
Q Consensus       143 ~~~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g------~~~iv  214 (715)
                      ...+.+.|+++   |.. ..|.||||.++..  ++.++|+.|++.++ +++.+ + .+.||||.|+.++      +.++|
T Consensus        19 v~~LL~~Gadv---N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GA-dvn~~-~-~~~tpL~~a~~~~~~~~~~~~~iv   91 (494)
T PHA02989         19 LEFLLRTGFDV---NEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGA-DVNYK-G-YIETPLCAVLRNREITSNKIKKIV   91 (494)
T ss_pred             HHHHHHcCCCc---ccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCC-CccCC-C-CCCCcHHHHHhccCcchhhHHHHH
Confidence            33466778854   444 4578888766554  36899999987655 44443 3 5789999887754      57899


Q ss_pred             HHHHhcCCCcccccccCCCChHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHHHhc
Q 005095          215 QELVNLMTPEDLALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL--GHKEMIWYLYSV  289 (715)
Q Consensus       215 ~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~  289 (715)
                      ++|++  +|+|+|.+|..|.||||.|+..   |+.+++++|+++|++++..+|..|.||||+|+..  ++.++|++|+++
T Consensus        92 ~~Ll~--~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         92 KLLLK--FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHH--CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            99999  8999999999999999988765   6789999999999998447888999999998764  578999999999


Q ss_pred             CCCCCc-cccccccHHHHHHHcC----ChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcC
Q 005095          290 TKEEDL-KEEDRIELLVAVIDAG----LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSV  364 (715)
Q Consensus       290 ga~~~~-~~~~g~t~L~~A~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~  364 (715)
                      |++++. .+..|.||||.|+..+    +.+++++|+++|+++ +.+|..|.||||.++..+.....              
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~--------------  234 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSK--------------  234 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcc--------------
Confidence            999988 6778999999887664    889999999999886 77888899999988765321000              


Q ss_pred             CcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHH
Q 005095          365 PGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMF  444 (715)
Q Consensus       365 ~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~L  444 (715)
                                    ...++++++.      .+++++.+|..|.||||+|+..|+.+++++|+++|+| ++.+|..|+|||
T Consensus       235 --------------~~~~il~~l~------~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL  293 (494)
T PHA02989        235 --------------KEFKVLNFIL------KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVL  293 (494)
T ss_pred             --------------cchHHHHHHH------hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHH
Confidence                          0013333332      2578888899999999999999999999999999999 788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCcchh
Q 005095          445 HIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       445 h~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                      |+|+.+|+.++++.|++.+...+
T Consensus       294 ~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        294 TYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HHHHHcCCHHHHHHHHhcCCChH
Confidence            99999999999999998775543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-36  Score=330.57  Aligned_cols=247  Identities=17%  Similarity=0.190  Sum_probs=206.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      .+++||.|+..|+.+++++|++.+.+ ++.. +.+|.||||+|+..|+.++|++|++  .|++++.++.+|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFE-IYDGISPIKLAMKFRDSEAIKLLMK--HGAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCcc-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccCCCcccHHHHHHH
Confidence            35789999999999999998876543 3433 6788999999999999999999998  788888888888999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      .|+.+++++|++.|+......+.+|.||||+|+..|+.+++++|+++|++++.++.+|.||||.|+..|+.+++++|+++
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999988877666777889999999999999999999999999888888888899988888888888888888


Q ss_pred             CcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccccc
Q 005095          323 HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL  402 (715)
Q Consensus       323 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~  402 (715)
                      ++++ +.+|.                                                                      
T Consensus       158 g~~~-~~~d~----------------------------------------------------------------------  166 (413)
T PHA02875        158 KACL-DIEDC----------------------------------------------------------------------  166 (413)
T ss_pred             CCCC-CCCCC----------------------------------------------------------------------
Confidence            7764 44444                                                                      


Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC-CcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHH
Q 005095          403 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS-RSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML  481 (715)
Q Consensus       403 ~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G-~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpL  481 (715)
                        .|.||||+|+..|+.+++++|+++|++ ++..+..| .||+|+|+..|+.+++++|+++|+++++. ...+.+|.|||
T Consensus       167 --~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~-~~~~~~~~t~l  242 (413)
T PHA02875        167 --CGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM-FMIEGEECTIL  242 (413)
T ss_pred             --CCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH-hhcCCCchHHH
Confidence              455566666667788999999999999 66777776 58999999999999999999999999863 24688899999


Q ss_pred             HHhhhhC
Q 005095          482 HLAGKLA  488 (715)
Q Consensus       482 h~A~~~~  488 (715)
                      ++++..+
T Consensus       243 ~~~~~~~  249 (413)
T PHA02875        243 DMICNMC  249 (413)
T ss_pred             HHHHhhc
Confidence            9987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=336.84  Aligned_cols=278  Identities=17%  Similarity=0.194  Sum_probs=232.3

Q ss_pred             HHHHHHH---cCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCcccccccCCCChHHHHH
Q 005095          166 PLHLAAL---KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA--RRTLFVQELVNLMTPEDLALRNKVGNTALCFA  240 (715)
Q Consensus       166 ~Lh~Aa~---~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~--g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~A  240 (715)
                      +||.-+.   ..+.++|++||+.+. +++..  .+|.||||.++..  ++.++|++|++  +|+++|.++ .+.||||.|
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~Ga-dvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~--~GAdvn~~~-~~~tpL~~a   76 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRTGF-DVNEE--YRGNSILLLYLKRKDVKIKIVKLLID--NGADVNYKG-YIETPLCAV   76 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHcCC-Ccccc--cCCCCHHHHHHhcCCCChHHHHHHHH--cCCCccCCC-CCCCcHHHH
Confidence            4554443   478999999997765 45554  4689999876654  37999999999  899999887 679999999


Q ss_pred             HHcC------cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCC-CccccccccHHHHHHHc
Q 005095          241 AVSG------VTKIAEVMVNKNRELPSIRGNKGATPLCMAALL---GHKEMIWYLYSVTKEE-DLKEEDRIELLVAVIDA  310 (715)
Q Consensus       241 a~~g------~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~  310 (715)
                      +.++      +.+++++|+++|++++ .+|..|.||||.|+..   |+.+++++|+++|+|+ +.++..|.||||+|+..
T Consensus        77 ~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         77 LRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             HhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence            8754      5789999999999997 7999999999998765   6799999999999999 89999999999998765


Q ss_pred             --CChhHHHHHHhhCccccee-cCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHH
Q 005095          311 --GLYDVALDLIQHHPQLAMA-RDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRL  387 (715)
Q Consensus       311 --g~~~iv~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l  387 (715)
                        ++.+++++|+++|+++ +. .+..|.||||.|+..+...   ..                           .+++++|
T Consensus       156 ~~~~~~iv~~Ll~~Gadi-~~~~~~~g~tpL~~a~~~~~~~---~~---------------------------~~iv~~L  204 (494)
T PHA02989        156 FSVKKDVIKILLSFGVNL-FEKTSLYGLTPMNIYLRNDIDV---IS---------------------------IKVIKYL  204 (494)
T ss_pred             ccCCHHHHHHHHHcCCCc-cccccccCCChHHHHHhccccc---cc---------------------------HHHHHHH
Confidence              5889999999999997 45 6889999999998764210   01                           3677777


Q ss_pred             HHHHHhcCcccccccccCCchHHHHHHHc------CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 005095          388 WEQVLLLDDSKIGELLRKPSRLLFTAVEL------GNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  461 (715)
Q Consensus       388 ~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~------g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  461 (715)
                      +++     +++++..+..+.||||.++..      +..+++++|++ +++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus       205 l~~-----Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~  277 (494)
T PHA02989        205 IKK-----GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLK  277 (494)
T ss_pred             HhC-----CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHH
Confidence            765     566777777889999987764      35778887665 688 89999999999999999999999999999


Q ss_pred             cCcchhhhhcccCCCCchHHHHhhhhCCCCc
Q 005095          462 LGAHKDLIASYKDENNNNMLHLAGKLAPPDR  492 (715)
Q Consensus       462 ~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~  492 (715)
                      +|+|++.    +|..|+||||+|++.++.+.
T Consensus       278 ~Gadin~----~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        278 LGDDIYN----VSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             cCCCccc----cCCCCCCHHHHHHHcCCHHH
Confidence            9999985    99999999999999998663

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-36  Score=303.97  Aligned_cols=222  Identities=12%  Similarity=0.140  Sum_probs=195.3

Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 005095          208 ARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  287 (715)
Q Consensus       208 ~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  287 (715)
                      .++.+++++|++  +|+  +.+|.+|+||||+|+..|+.+++++|+++|++++ ..  +|.||||+|+..|+.++|++|+
T Consensus         9 ~~~~~~~~~Lis--~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSS--KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHh--CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-CC--CCCCHHHHHHHCCCHHHHHHHH
Confidence            467899999999  676  4689999999999999999999999999999876 33  4789999999999999999999


Q ss_pred             hcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCC-CHHHHHHhCCCCcccCcchhhHhhhhhcCCc
Q 005095          288 SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE-TALHVLARKPSAFASGSQLGFWRRCIYSVPG  366 (715)
Q Consensus       288 ~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~  366 (715)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++++++ +.++..|+ ||||+|+..|+                    
T Consensus        82 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~--------------------  140 (284)
T PHA02791         82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLND--------------------  140 (284)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCC--------------------
Confidence            999999999999999999999999999999999999996 77888885 89999999986                    


Q ss_pred             chhccCCchhHHHHHHHHHHHHHHHHhcCcccccccc-cCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH-H
Q 005095          367 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL-RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSM-F  444 (715)
Q Consensus       367 ~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~-~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~-L  444 (715)
                                    .+++++|++++.     +.  .+ ..|.||||+|+++|+.+++++|+++|++ ++.+|..|.|| |
T Consensus       141 --------------~eivk~LL~~~~-----~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L  198 (284)
T PHA02791        141 --------------VSIVSYFLSEIP-----ST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDI  198 (284)
T ss_pred             --------------HHHHHHHHhcCC-----cc--cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHH
Confidence                          366777766421     11  11 2479999999999999999999999999 78899999987 9


Q ss_pred             HHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHh
Q 005095          445 HIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  484 (715)
Q Consensus       445 h~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A  484 (715)
                      |+|+.+|+.+++++|+++|++++    ++|.+| |||+.|
T Consensus       199 ~~Aa~~~~~e~v~lLl~~Ga~in----~~~~~~-~~l~~~  233 (284)
T PHA02791        199 KLAIDNKDLEMLQALFKYDINIY----SVNLEN-VLLDDA  233 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCc----cCcccC-ccCCCH
Confidence            99999999999999999999997    588854 777444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-36  Score=270.12  Aligned_cols=184  Identities=26%  Similarity=0.306  Sum_probs=169.7

Q ss_pred             ccccCC-CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 005095          155 GVERNC-FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG  233 (715)
Q Consensus       155 ~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G  233 (715)
                      ..+.++ .+|+||||+||..|+.+++++|+......++.+ |..||||||+||..|+.|+|+.|+.. .|+|+|..+..|
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~~evVk~Ll~r-~~advna~tn~G  106 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGNDEVVKELLNR-SGADVNATTNGG  106 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCcHHHHHHHhcC-CCCCcceecCCC
Confidence            444444 489999999999999999999997555555555 89999999999999999999999995 499999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCCh
Q 005095          234 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY  313 (715)
Q Consensus       234 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  313 (715)
                      .||||||+..|..||+++|+++|+.+. .+|+.|.||||.|+..|+.+++++|+..|+.+|.+|..|+||||.|...|+.
T Consensus       107 ~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  107 QTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             cceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCc
Confidence            999999999999999999999999885 8999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCcccceecCCCCCCHHHHHHh
Q 005095          314 DVALDLIQHHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       314 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      ++..+|+++|++. ...|++| ||+..|+.
T Consensus       186 d~a~lLV~~gAd~-~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  186 DVAVLLVRAGADT-DREDKEG-TALRIACN  213 (226)
T ss_pred             hHHHHHHHhccce-eeccccC-chHHHHHH
Confidence            9999999999986 7889988 99988875

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.9e-35  Score=325.21  Aligned_cols=245  Identities=13%  Similarity=0.179  Sum_probs=124.1

Q ss_pred             CHHHHHHHHhcCCCcccccccCCCChHHHHHHHc-----CcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC---CHH
Q 005095          210 RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS-----GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG---HKE  281 (715)
Q Consensus       210 ~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~-----g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g---~~~  281 (715)
                      +.++|++|++  +|+++|.+|..|.||||.|+.+     ++.+++++|+++|++++ .+|..|.||||+|+..+   +.+
T Consensus        50 ~~~iv~~Ll~--~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~  126 (489)
T PHA02798         50 STDIVKLFIN--LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLE  126 (489)
T ss_pred             CHHHHHHHHH--CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHH
Confidence            4555555555  4555555555555555555432     34555555555555553 45555555555555543   445


Q ss_pred             HHHHHHhcCCCCCccccccccHHHHHHHcCC---hhHHHHHHhhCcccceec-CCCCCCHHHHHHhCCCCcccCcchhhH
Q 005095          282 MIWYLYSVTKEEDLKEEDRIELLVAVIDAGL---YDVALDLIQHHPQLAMAR-DGNGETALHVLARKPSAFASGSQLGFW  357 (715)
Q Consensus       282 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~  357 (715)
                      ++++|+++|++++.+|.+|.||||+|++.++   .+++++|+++|+++ +.+ +..|.||||.++..+..   ....+++
T Consensus       127 iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~---~~~~~iv  202 (489)
T PHA02798        127 ILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNID---RIDADIL  202 (489)
T ss_pred             HHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccc---cCCHHHH
Confidence            5555555555555555555555555555554   55555555555553 333 23455555555443210   0112223


Q ss_pred             hhhhhcCCcch--hccCCchhHH-------HH----HHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHH
Q 005095          358 RRCIYSVPGMR--AILDPKLMHL-------QA----LELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMV  424 (715)
Q Consensus       358 ~~ll~~~~~~~--~~~~~~~lh~-------a~----~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~  424 (715)
                      +.|+..+....  +..+.++++.       +.    .++++.++      .+.+++.+|..|.||||+|+..|+.+++++
T Consensus       203 k~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~------~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~  276 (489)
T PHA02798        203 KLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIF------SYIDINQVDELGFNPLYYSVSHNNRKIFEY  276 (489)
T ss_pred             HHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHH------hcCCCCCcCcCCccHHHHHHHcCcHHHHHH
Confidence            22222221111  1111121110       00    11222211      135566666666666666666666666666


Q ss_pred             HHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhh
Q 005095          425 LIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       425 Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                      |+++|+| ++.+|..|+||||+|+++++.++++.|++++++++.
T Consensus       277 LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        277 LLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             HHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            6666666 566666666666666666666666666666666654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=322.87  Aligned_cols=258  Identities=14%  Similarity=0.089  Sum_probs=175.7

Q ss_pred             CChHHHHHHH--cCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCcccccccCCCCh
Q 005095          163 SYAPLHLAAL--KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA-----RRTLFVQELVNLMTPEDLALRNKVGNT  235 (715)
Q Consensus       163 g~T~Lh~Aa~--~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~g~~i~~~d~~G~T  235 (715)
                      |.|+++.+..  .++.++|++|++.+. +++.. |..|.||||.|+.+     ++.+++++|++  +|+|+|.+|.+|+|
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Ga-dvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~--~GadiN~~d~~G~T  111 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGA-NVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILIE--NGADINKKNSDGET  111 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCC-CCCCC-CCCCCChHHHHHHhHHhHHhHHHHHHHHHH--CCCCCCCCCCCcCc
Confidence            4565553333  346777777776544 44443 67777777777653     56777777777  67777777777777


Q ss_pred             HHHHHHHcC---cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHhcCCCCCccc-cccccHHHHHH
Q 005095          236 ALCFAAVSG---VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH---KEMIWYLYSVTKEEDLKE-EDRIELLVAVI  308 (715)
Q Consensus       236 pLh~Aa~~g---~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~  308 (715)
                      |||+|+.++   +.+++++|+++|++++ .+|..|.||||+|++.|+   .+++++|+++|++++..+ ..|.||||.++
T Consensus       112 pLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        112 PLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             HHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHH
Confidence            777777764   5677777777777775 677777777777777776   777777777777777664 45677777766


Q ss_pred             Hc----CChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhh-cCCcchhccCCchhHHHHH--
Q 005095          309 DA----GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY-SVPGMRAILDPKLMHLQAL--  381 (715)
Q Consensus       309 ~~----g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~lh~a~~--  381 (715)
                      ..    ++.+++++|+++|+++ +..+..|.++++.....-.........+++..++. ...+.++..|.||||.|+.  
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~  269 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHN  269 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcC
Confidence            53    3677777777777764 56666677776521100000000012334444332 3445566677777777763  


Q ss_pred             --HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 005095          382 --ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN  431 (715)
Q Consensus       382 --~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d  431 (715)
                        +.+++|++.     +++++.++..|.||||.|+++|+.++++.|++++|+
T Consensus       270 ~~~~v~~LL~~-----GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~  316 (489)
T PHA02798        270 NRKIFEYLLQL-----GGDINIITELGNTCLFTAFENESKFIFNSILNKKPN  316 (489)
T ss_pred             cHHHHHHHHHc-----CCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence              667777665     788999999999999999999999999999999999

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=298.28  Aligned_cols=213  Identities=19%  Similarity=0.196  Sum_probs=179.2

Q ss_pred             HHHHcCCHHHHHHHHhhCcc----chhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc--------ccCCCChH
Q 005095          169 LAALKGDWDFARNFFNLNPE----AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL--------RNKVGNTA  236 (715)
Q Consensus       169 ~Aa~~g~~~~v~~LL~~~~~----~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~--------~d~~G~Tp  236 (715)
                      .|++.|.+..++.|+.....    .... .+.+|.|||.+||++||.++|++|+++ .++++..        ...+|-+|
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~-~~~~g~tPL~iaaRnGH~~vVeyLle~-~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIG-EVQNGGTPLLIAARNGHADVVEYLLEH-CRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhc-cccCCCCceeeehhcCcHHHHHHHHHH-hcCCccCCceEEeCCcccCCCch
Confidence            67888888877777754321    1112 257899999999999999999999996 4665443        34578999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHH
Q 005095          237 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVA  316 (715)
Q Consensus       237 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv  316 (715)
                      |..|+..||.++||.|+++|+++| .......|||--||..|+.++||+|+++|+|+++.+..|.|.||.|+.+|+.+|+
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN-~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVN-DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccc-cccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence            999999999999999999999997 5666778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcc-hhccCCchhHHHHHHHHHHHHHHHH
Q 005095          317 LDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM-RAILDPKLMHLQALELVKRLWEQVL  392 (715)
Q Consensus       317 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~lh~a~~~~~~~l~~~~l  392 (715)
                      ++|++.|+++ +.++..|+|+||.+++.|+       +++++.|++....+ .+.+|.|||..|+.......++..+
T Consensus       167 qyLle~gADv-n~ks~kGNTALH~caEsG~-------vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  167 QYLLEQGADV-NAKSYKGNTALHDCAESGS-------VDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHHHhCCCc-chhcccCchHHHhhhhccc-------HHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999996 9999999999999999985       89999998776644 4577999999998644444444433

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-34  Score=316.27  Aligned_cols=243  Identities=16%  Similarity=0.057  Sum_probs=194.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  277 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~  277 (715)
                      .+++||.|+..|+.+++++|++  .|++++.++.+|.||||+|+..|+.+++++|+++|++++ .++..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~--~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD--IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH--CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHC
Confidence            5688888888888888888888  788888888888888888888888888888888888764 6677788888888888


Q ss_pred             CCHHHHHHHHhcCCCCC-ccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhh
Q 005095          278 GHKEMIWYLYSVTKEED-LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF  356 (715)
Q Consensus       278 g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  356 (715)
                      |+.+++++|++.|++.+ ..+.+|.||||+|+..|+.+++++|+++|++. +.++.                        
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~------------------------  133 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNT------------------------  133 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC------------------------
Confidence            88888888888887653 44566788888888888888888888777764 44333                        


Q ss_pred             HhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q 005095          357 WRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKV  436 (715)
Q Consensus       357 ~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~  436 (715)
                                                                      .|.||||+|+..|+.+++++|+++|++ ++.+
T Consensus       134 ------------------------------------------------~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~  164 (413)
T PHA02875        134 ------------------------------------------------DKFSPLHLAVMMGDIKGIELLIDHKAC-LDIE  164 (413)
T ss_pred             ------------------------------------------------CCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCC
Confidence                                                            455666667777888999999999999 7889


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCC-chHHHHhhhhCCCCc--cccCCCchhhhHHHhhhHHHH
Q 005095          437 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN-NNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWFKEI  513 (715)
Q Consensus       437 d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G-~TpLh~A~~~~~~~~--l~l~~ga~~~~~~~l~~~~~v  513 (715)
                      |..|+||||+|+..|+.+++++|+++|++++.    .+..| .||+|+|+..++.+.  +++..|++++.          
T Consensus       165 d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~----~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~----------  230 (413)
T PHA02875        165 DCCGCTPLIIAMAKGDIAICKMLLDSGANIDY----FGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI----------  230 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc----CCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch----------
Confidence            99999999999999999999999999999985    67666 589999999998763  44555555422          


Q ss_pred             HHhhcchhHhhhhcCCCCchhhhHHH
Q 005095          514 EKVVQPSYREAKNSEGRTPHILFSEE  539 (715)
Q Consensus       514 ~~ll~~~~~~~~n~~G~Tpl~~a~~~  539 (715)
                              ....+.+|.||++++...
T Consensus       231 --------~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        231 --------MFMIEGEECTILDMICNM  248 (413)
T ss_pred             --------HhhcCCCchHHHHHHHhh
Confidence                    123467899999987654

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=292.58  Aligned_cols=346  Identities=12%  Similarity=0.033  Sum_probs=226.9

Q ss_pred             cccCCCCCCcccccCCCCCChHHHHHHHcCCH----HHHHHHHhhCccchhhccCCCCCcHHHH-HHHcCCHHHHHHHHh
Q 005095          145 SLSQPGAVSGGVERNCFTSYAPLHLAALKGDW----DFARNFFNLNPEAVCVRISRNQDTALHI-AAGARRTLFVQELVN  219 (715)
Q Consensus       145 ~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~----~~v~~LL~~~~~~~~~~~d~~g~TpLh~-Aa~~g~~~iv~~Ll~  219 (715)
                      .+.+.|+.+-.    ..+|.||||.-..+.+.    +++-.|+...    +. .+-+|.+|+|+ |+.+|+.|+|++|++
T Consensus        23 ~l~~~g~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~n~~~~~~~~~~~s~n~~lElvk~LI~   93 (631)
T PHA02792         23 SLIESGANPLY----EYDGETPLKAYVTKKNNNIKNDVVILLLSSV----DY-KNINDFDIFEYLCSDNIDIELLKLLIS   93 (631)
T ss_pred             HHHHcCCCccc----ccCCCccHHHHHhhhhhhHHHHHHHHHHhCC----Cc-CccCCccHHHHHHHhcccHHHHHHHHH
Confidence            36677886543    35566999988655542    2444444322    12 36778889986 456789999999999


Q ss_pred             cCCCcccccccCCCChHHHHHHH-cCcHHHHHHHHhcCCCCC-----------------------------------ccC
Q 005095          220 LMTPEDLALRNKVGNTALCFAAV-SGVTKIAEVMVNKNRELP-----------------------------------SIR  263 (715)
Q Consensus       220 ~~~g~~i~~~d~~G~TpLh~Aa~-~g~~~iv~~Ll~~g~~~~-----------------------------------~~~  263 (715)
                        +|+|+|.++..|.||||+|+. .++.|++++|+++|++..                                   +..
T Consensus        94 --~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (631)
T PHA02792         94 --KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYD  171 (631)
T ss_pred             --cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccC
Confidence              899999999989999999966 689999999999998742                                   134


Q ss_pred             CCCCCCHHHHHHHcC-------CHHHHHHHHhcCCCCCccccccccHHHHHHHcC--ChhHHHHHHhhCcccceecCCCC
Q 005095          264 GNKGATPLCMAALLG-------HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMARDGNG  334 (715)
Q Consensus       264 d~~g~tpLh~A~~~g-------~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g  334 (715)
                      |..|.||||+|+..+       +.|++++|+++|++++..|..|.||||+|+.+.  ..|+++.|++..-+.     .+-
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~-----~~~  246 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG-----NEL  246 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccc-----cch
Confidence            455777777777776       677777777777777777777777777777776  566777776631110     001


Q ss_pred             CCHHHHHHhCCCCcc-cCcchhhHhhhhhcCCc---------chhcc---------CC---chhHHH------HHHHHHH
Q 005095          335 ETALHVLARKPSAFA-SGSQLGFWRRCIYSVPG---------MRAIL---------DP---KLMHLQ------ALELVKR  386 (715)
Q Consensus       335 ~tpLh~A~~~~~~~~-~~~~~~~~~~ll~~~~~---------~~~~~---------~~---~~lh~a------~~~~~~~  386 (715)
                      +..|+--.+...... ..-...++..|+.....         .+...         ..   ..||.-      ..+++++
T Consensus       247 ~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~  326 (631)
T PHA02792        247 MNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKC  326 (631)
T ss_pred             HhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHH
Confidence            111111111100000 00122244444422210         00000         00   011111      1366666


Q ss_pred             HHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC--CcHHHHHHHhCCHH---HHHHHHH
Q 005095          387 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS--RSMFHIAVVHRQEK---IFNLIYE  461 (715)
Q Consensus       387 l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G--~T~Lh~A~~~~~~~---iv~~Ll~  461 (715)
                      |++++....       ...+..+++.|+..|+.++|++|+++|++ ++.+|.+|  .||||+|+.....+   ++++|++
T Consensus       327 LId~Ga~~~-------r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        327 MIDEGATLY-------RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHCCCccc-------cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence            666644332       12355679999999999999999999999 77888775  69999988776654   6889999


Q ss_pred             cCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-chhHhhhhcCCCCchhhhHH
Q 005095          462 LGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSEGRTPHILFSE  538 (715)
Q Consensus       462 ~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~Tpl~~a~~  538 (715)
                      +|++++    .+|..|+||||+|+..++.+                    .++.++. +++++.+|..|+||+++|..
T Consensus       399 ~GADIN----~kD~~G~TPLh~Aa~~~n~e--------------------ivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        399 YIDDIN----KIDKHGRSILYYCIESHSVS--------------------LVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cCCccc----cccccCcchHHHHHHcCCHH--------------------HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999998    49999999999999887643                    3344444 56679999999999999976

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.4e-31  Score=281.05  Aligned_cols=158  Identities=23%  Similarity=0.322  Sum_probs=95.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCChHHHHHHHc
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVS  243 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d-~~G~TpLh~Aa~~  243 (715)
                      +-.+.|++.|+++.|+.+++..+..++.. |.+|-|+||+||.+++.+++++|++  +|+++|..+ .-|.||||+|+++
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~--~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRLDVARYLIS--HGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcHHHHHHHHH--cCCCccccCCCCCCCcchHHHHc
Confidence            35666666666666666665544444443 5566666666666666666666666  566666665 4556666666666


Q ss_pred             CcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhC
Q 005095          244 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  323 (715)
Q Consensus       244 g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  323 (715)
                      |+..+|++|+++|+++. .+|.+|.||||+|++.|+.-.|-+|+.+|+|+|.+|.+|+||||+|+.+|+...+..|++.+
T Consensus       123 G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPT-LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             CcHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            66666666666666654 56666666666666666666666666666666655555555555555555555455555555


Q ss_pred             ccc
Q 005095          324 PQL  326 (715)
Q Consensus       324 ~~~  326 (715)
                      +.+
T Consensus       202 a~~  204 (600)
T KOG0509|consen  202 ASL  204 (600)
T ss_pred             ccc
Confidence            443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.8e-31  Score=279.47  Aligned_cols=212  Identities=23%  Similarity=0.241  Sum_probs=169.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~  276 (715)
                      .-.+-++.|++.|.++-|+.|++. .|.+++..|.+|.|+||+||.+++.+++++|+++|++++..-..-+.||||+|++
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~-~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVES-EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhh-cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHH
Confidence            445678999999999999999993 2999999999999999999999999999999999999985555789999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhh
Q 005095          277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF  356 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  356 (715)
                      +|+..+|++|+++|||++.+|.+|.+|+|.|++.|+.-++-+|+.++++. +.+|.+|+||||+|+.+|..         
T Consensus       122 ~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~---------  191 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFA---------  191 (600)
T ss_pred             cCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhccc---------
Confidence            99999999999999999999999999999999999999999999999875 99999999999999998752         


Q ss_pred             HhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccc-cCCchHHHHHHHcCCHHHHHHHHHhCCCCccc
Q 005095          357 WRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL-RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWK  435 (715)
Q Consensus       357 ~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~-~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~  435 (715)
                                               ..+..|++-     ++.++..| ..|+||||+|+..|+.+++++|++.|++ ...
T Consensus       192 -------------------------~~v~~LL~f-----~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~-~d~  240 (600)
T KOG0509|consen  192 -------------------------LFVRRLLKF-----GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD-LDK  240 (600)
T ss_pred             -------------------------HHHHHHHHh-----cccccccccccCCchHHHHHhcCCcceEehhhhcCCc-ccc
Confidence                                     112222222     23333333 5566666666666666666633333333 555


Q ss_pred             cCCCCCcHHHHHHHh
Q 005095          436 VDDHSRSMFHIAVVH  450 (715)
Q Consensus       436 ~d~~G~T~Lh~A~~~  450 (715)
                      +|.+|.||+.+|.+.
T Consensus       241 ~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  241 TNTNGKTPFDLAQER  255 (600)
T ss_pred             cccCCCCHHHHHHHh
Confidence            566666666666544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=6e-30  Score=279.23  Aligned_cols=307  Identities=10%  Similarity=0.111  Sum_probs=223.3

Q ss_pred             cccCCCCCChHHHH-HHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHH-cCCHHHHHHHHhcCCCccc-------
Q 005095          156 VERNCFTSYAPLHL-AALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG-ARRTLFVQELVNLMTPEDL-------  226 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~-Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~-~g~~~iv~~Ll~~~~g~~i-------  226 (715)
                      .+..+-+|.+|+|+ |...|++|+|++|+++ +.+++.+ +..|.||||+|+. .|+.|++++|++  +|+++       
T Consensus        64 ~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~-~n~~~~~l~ya~~~~~~~eivk~Ll~--~Gad~~~~~~~g  139 (631)
T PHA02792         64 VDYKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSI-KNGINIVEKYATTSNPNVDVFKLLLD--KGIPTCSNIQYG  139 (631)
T ss_pred             CCcCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccc-cCCCCcceeEeecCCCChHHHHHHHH--CCCCcccccccC
Confidence            34455566679985 5568999999999986 4566665 6679999999966 699999999999  78653       


Q ss_pred             -----------------------------ccccCCCChHHHHHHHcC-------cHHHHHHHHhcCCCCCccCCCCCCCH
Q 005095          227 -----------------------------ALRNKVGNTALCFAAVSG-------VTKIAEVMVNKNRELPSIRGNKGATP  270 (715)
Q Consensus       227 -----------------------------~~~d~~G~TpLh~Aa~~g-------~~~iv~~Ll~~g~~~~~~~d~~g~tp  270 (715)
                                                   |.+|..|.||||+|+.++       +.|++++|+++|++++ ..|..|.||
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~  218 (631)
T PHA02792        140 YKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTT  218 (631)
T ss_pred             cchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChH
Confidence                                         345677999999999999       8999999999999997 688899999


Q ss_pred             HHHHHHcC--CHHHHHHHHhcCCCCCccccccccHHHHHHHc------CCh--hHHHHHHhhCc--ccce---ecCCC--
Q 005095          271 LCMAALLG--HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA------GLY--DVALDLIQHHP--QLAM---ARDGN--  333 (715)
Q Consensus       271 Lh~A~~~g--~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~------g~~--~iv~~Ll~~~~--~~~~---~~d~~--  333 (715)
                      ||+|+.+.  ..|++++|++..-+.    .+....|+.-.+.      ++.  .+|..|++.+.  ++..   ..+.+  
T Consensus       219 l~~~~~~~~i~~ei~~~L~~~~~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~  294 (631)
T PHA02792        219 LYYYVDKCDIKREIFDALFDSNYSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNII  294 (631)
T ss_pred             HHHHHHcccchHHHHHHHHhccccc----cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhH
Confidence            99999999  899999998842111    1112222222111      112  25666665443  1100   00000  


Q ss_pred             -----------CCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHH----HHHHHHHHHHHHhcCccc
Q 005095          334 -----------GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA----LELVKRLWEQVLLLDDSK  398 (715)
Q Consensus       334 -----------g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~----~~~~~~l~~~~l~~~~~~  398 (715)
                                 =+--||.=.+.+.     -..++++.++..+...........++.++    .+++++|+++     |++
T Consensus       295 ~~~~~~~~~~~~q~~l~~Yl~~~~-----v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~-----GAD  364 (631)
T PHA02792        295 ISSILKRYTDSIQDLLSEYVSYHT-----VYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKN-----GNV  364 (631)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCC-----ccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHc-----CCc
Confidence                       0123454444442     25667777776666543323344455554    3777777765     667


Q ss_pred             ccccccCC--chHHHHHHHcCCH---HHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhccc
Q 005095          399 IGELLRKP--SRLLFTAVELGNV---EFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYK  473 (715)
Q Consensus       399 ~~~~~~~g--~t~Lh~A~~~g~~---eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~  473 (715)
                      ++.+|..|  .||||.|+.....   +++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++++.    +
T Consensus       365 IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----k  439 (631)
T PHA02792        365 VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----T  439 (631)
T ss_pred             hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----c
Confidence            77777664  6999998877665   468899999999 889999999999999999999999999999999884    9


Q ss_pred             CCCCchHHHHhhh
Q 005095          474 DENNNNMLHLAGK  486 (715)
Q Consensus       474 d~~G~TpLh~A~~  486 (715)
                      |..|+||||+|+.
T Consensus       440 D~~G~TpL~~A~~  452 (631)
T PHA02792        440 TKYGSTCIGICVI  452 (631)
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999976

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=241.75  Aligned_cols=176  Identities=12%  Similarity=0.090  Sum_probs=158.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCccccccc-CCCChHH
Q 005095          161 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR--RTLFVQELVNLMTPEDLALRN-KVGNTAL  237 (715)
Q Consensus       161 ~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~g~~i~~~d-~~G~TpL  237 (715)
                      ..++||||.|+..|+.+.|+.|++.    .+. .|..|.||||+|+..+  +.+++++|++  +|++++.++ ..|.|||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~-~~~~g~TpLh~a~~~~~~~~eiv~~Ll~--~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VND-CNDLYETPIFSCLEKDKVNVEILKFLIE--NGADVNFKTRDNNLSAL   91 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhc-cCccCCCHHHHHHHcCCCCHHHHHHHHH--CCCCCCccCCCCCCCHH
Confidence            3467999999999999999999864    233 4889999999999865  8999999999  899999997 4899999


Q ss_pred             HHHHHc---CcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCCCccccccccHHHH-HHHcC
Q 005095          238 CFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL--LGHKEMIWYLYSVTKEEDLKEEDRIELLVA-VIDAG  311 (715)
Q Consensus       238 h~Aa~~---g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~-A~~~g  311 (715)
                      |+|+..   ++.+++++|+++|++++ .+|..|.||||+|+.  .++.+++++|+++|++++.+|.+|.||||. |+..+
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcC
Confidence            998864   47999999999999997 799999999999986  468999999999999999999999999995 56788


Q ss_pred             ChhHHHHHHhhCcccceecCCCCCCHHHHHHhCC
Q 005095          312 LYDVALDLIQHHPQLAMARDGNGETALHVLARKP  345 (715)
Q Consensus       312 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  345 (715)
                      +.+++++|+++|+++ +.+|..|+||||+|..++
T Consensus       171 ~~~iv~~Ll~~Gadi-~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        171 DKKIFDFLTSLGIDI-NETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhhh
Confidence            999999999999986 899999999999999764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=235.20  Aligned_cols=107  Identities=11%  Similarity=0.074  Sum_probs=70.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC--cHHHHHHHHhcCCCCCccCC-CCCCCHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG--VTKIAEVMVNKNRELPSIRG-NKGATPLC  272 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~g~~~~~~~d-~~g~tpLh  272 (715)
                      ..+.||||.|+..|+.++|+.|++  .   ++..|..|.||||+|+..+  +.+++++|+++|++++ .++ ..|.||||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~--~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn-~~~~~~g~TpLh   92 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIK--F---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN-FKTRDNNLSALH   92 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHH--h---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC-ccCCCCCCCHHH
Confidence            456777777777777777777776  2   3556677777777777644  6777777777777776 343 46777777


Q ss_pred             HHHHc---CCHHHHHHHHhcCCCCCccccccccHHHHHH
Q 005095          273 MAALL---GHKEMIWYLYSVTKEEDLKEEDRIELLVAVI  308 (715)
Q Consensus       273 ~A~~~---g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~  308 (715)
                      +|+..   ++.+++++|+++|+++|.+|.+|.||||.|+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~  131 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYM  131 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            76643   3566777777666665555444444444443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.2e-27  Score=248.43  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=50.3

Q ss_pred             cccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhC--------CHHHHHHHHHcCcchh
Q 005095          396 DSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR--------QEKIFNLIYELGAHKD  467 (715)
Q Consensus       396 ~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~--------~~~iv~~Ll~~ga~~~  467 (715)
                      +++++.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|        +.+++++|+++|++++
T Consensus       211 GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        211 IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            334444455556666666666777788888888877 6777788888888888777        3578888888777765


Q ss_pred             h
Q 005095          468 L  468 (715)
Q Consensus       468 ~  468 (715)
                      .
T Consensus       290 ~  290 (437)
T PHA02795        290 C  290 (437)
T ss_pred             c
Confidence            3

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.8e-26  Score=241.23  Aligned_cols=173  Identities=15%  Similarity=-0.001  Sum_probs=124.6

Q ss_pred             HHHHcCCHHHHHHHHhhCccch----hhccCCCCCcHHHHHHH--cCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          169 LAALKGDWDFARNFFNLNPEAV----CVRISRNQDTALHIAAG--ARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       169 ~Aa~~g~~~~v~~LL~~~~~~~----~~~~d~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      +|+..+..++++.|+.++....    ....+..++|+||+|+.  .|+.++|++|++  +|+|++.+  ++.||||.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~--~GADIn~~--~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD--HGAVIYKI--ECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH--CCCCCCCC--CCCCHHHHHHH
Confidence            7777777788877776554422    01236667788888877  777888888887  77877764  34778888887


Q ss_pred             cCcHHHHHHHHhcCCCCCccC-----CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHH
Q 005095          243 SGVTKIAEVMVNKNRELPSIR-----GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL  317 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~  317 (715)
                      .|+.+++++|+++|++..+..     +..+.||+|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.++++
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            788888888888876433222     123667777777777788888888888888877778888888888888888888


Q ss_pred             HHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          318 DLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       318 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      +|+++|+++ +.+|..|+||||+|+..|+
T Consensus       239 lLL~~GAdI-N~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        239 WLLENGANV-NAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHHCCCCC-CCcCCCCCCHHHHHHHcCC
Confidence            888877775 7777777777777777653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=1.1e-24  Score=255.59  Aligned_cols=253  Identities=17%  Similarity=0.096  Sum_probs=187.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhCc-cchhhccCCCCCcHHH-HHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHH
Q 005095          162 TSYAPLHLAALKGDWDFARNFFNLNP-EAVCVRISRNQDTALH-IAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF  239 (715)
Q Consensus       162 ~g~T~Lh~Aa~~g~~~~v~~LL~~~~-~~~~~~~d~~g~TpLh-~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~  239 (715)
                      .++.+++.||+.|+.+.++.+++..+ .+++. .|..|+|||| .|+.+++.+++++|++  .|+    ++..|+||||.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~-~d~~G~t~Lh~~A~~~~~~eiv~lLl~--~g~----~~~~G~T~Lh~   88 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINC-PDRLGRSALFVAAIENENLELTELLLN--LSC----RGAVGDTLLHA   88 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCC-cCccchhHHHHHHHhcChHHHHHHHHh--CCC----CCCcChHHHHH
Confidence            45689999999999999999997632 33443 4889999999 8999999999999999  665    67899999999


Q ss_pred             HHHc---CcHHHHHHHHhcCCCC---------CccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc----------
Q 005095          240 AAVS---GVTKIAEVMVNKNREL---------PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE----------  297 (715)
Q Consensus       240 Aa~~---g~~~iv~~Ll~~g~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~----------  297 (715)
                      |+.+   +..++++.+.+.+.+.         ....+..|.||||+||.+|+.++|++|+++|++++.++          
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQG  168 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCC
Confidence            9983   2334555555554321         11234579999999999999999999999999998653          


Q ss_pred             ----cccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCC
Q 005095          298 ----EDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDP  373 (715)
Q Consensus       298 ----~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  373 (715)
                          ..|.||||.|+..|+.+++++|+++++++ +.+|..|+||||+|+..+...                         
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~-------------------------  222 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFK-------------------------  222 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhh-------------------------
Confidence                25889999999999999999999998875 788999999999998864200                         


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCC---CccccCCCCCcHHHHHHHh
Q 005095          374 KLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN---LIWKVDDHSRSMFHIAVVH  450 (715)
Q Consensus       374 ~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d---~~~~~d~~G~T~Lh~A~~~  450 (715)
                              ..                       .+.+.    ....+.+..+++.+.+   ..+..|.+|.||||+|+..
T Consensus       223 --------~~-----------------------~~~l~----~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       223 --------AE-----------------------YEELS----CQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             --------HH-----------------------HHHHH----HHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhc
Confidence                    00                       00000    0011122222222222   1145788999999999999


Q ss_pred             CCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhh
Q 005095          451 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK  486 (715)
Q Consensus       451 ~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~  486 (715)
                      |+.+++++|++.+....    ......+.|.+++..
T Consensus       268 g~~~l~~lLL~~~~~~k----k~~a~~~~~~~~~~~  299 (743)
T TIGR00870       268 GRIVLFRLKLAIKYKQK----KFVAWPNGQQLLSLY  299 (743)
T ss_pred             CCccHHHHHHHHHHhcc----eeeccCcchHhHhhh
Confidence            99999999998765543    356678888887764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-27  Score=258.27  Aligned_cols=294  Identities=20%  Similarity=0.228  Sum_probs=245.5

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      ++..+|+.|.+||.+|+-.||..+|+.||..+.+ +....|+.++|+|-+||..|..++|++||.  .|++-..++-...
T Consensus       782 niehrdkkgf~plImaatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~~vvelLl~--~gankehrnvsDy  858 (2131)
T KOG4369|consen  782 NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRTRVVELLLN--AGANKEHRNVSDY  858 (2131)
T ss_pred             cccccccccchhhhhhcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcchHHHHHHH--hhccccccchhhc
Confidence            5677888889999999999999999988866554 445558889999999999999999999998  7888888888888


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc-ccccccHHHHHHHcCC
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIR-GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK-EEDRIELLVAVIDAGL  312 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~-d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~  312 (715)
                      |||-+|...|..+|++.|+.+|.+++... .+.|.+||++|..+||.+.++.|++.|.|+|.. ..+.+|+|-+|+..|+
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr  938 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGR  938 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCc
Confidence            99999999999999999999998887543 456888999999999999999999999888875 4567788999999999


Q ss_pred             hhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHH
Q 005095          313 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  392 (715)
Q Consensus       313 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l  392 (715)
                      .+++.+||...+++ ..+-+.|.|||+-++..|..                                  ++-+.|+..+.
T Consensus       939 ~evv~lLLa~~anv-ehRaktgltplme~AsgGyv----------------------------------dvg~~li~~ga  983 (2131)
T KOG4369|consen  939 PEVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYV----------------------------------DVGNLLIAAGA  983 (2131)
T ss_pred             chHHHHHHHHhhhh-hhhcccCCcccchhhcCCcc----------------------------------ccchhhhhccc
Confidence            99999999888885 77788899999988887752                                  44455555554


Q ss_pred             hcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcc
Q 005095          393 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY  472 (715)
Q Consensus       393 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~  472 (715)
                      +.+...+   -.+-.|+|-+++..||...|+.|+...+. +..+|++|.|+|.+|+..|+...+.+|+++++|++.    
T Consensus       984 d~nasPv---p~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~---- 1055 (2131)
T KOG4369|consen  984 DTNASPV---PNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ---- 1055 (2131)
T ss_pred             ccccCCC---CCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhcccChhh----
Confidence            4443322   12345789999999999999999998888 789999999999999999999999999999999995    


Q ss_pred             cCCCCchHHHHhhhhCCCCccc
Q 005095          473 KDENNNNMLHLAGKLAPPDRLK  494 (715)
Q Consensus       473 ~d~~G~TpLh~A~~~~~~~~l~  494 (715)
                      +|+.-+|+++-|.+.|+..+++
T Consensus      1056 qdnr~~S~~maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1056 QDNRTNSRTMAAFRKGHFAIVK 1077 (2131)
T ss_pred             hhcccccccHHHHHhchhheec
Confidence            9999999999999999987543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1e-26  Score=213.31  Aligned_cols=235  Identities=21%  Similarity=0.185  Sum_probs=203.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      |..-+-.+...|+.++++..+.-.++.+... +.+|++++|.|+-.|+...+..+|.  +++..|..+-.+.+|+.+++.
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t-~p~g~~~~~v~ap~~s~~k~sttlt--N~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDET-DPEGWSALLVAAPCGSVDKVSTTLT--NGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCCCC-CchhhhhhhhcCCCCCcceeeeeec--ccccCCccccccCChhhHHHH
Confidence            4456667788888888888877666666554 7889999999999999999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      ..+.+.+..+.++..   +..|+.|.|||.+|+.+|++++|++|++.|+|++...+...++|.+|++.|..+||++|+.+
T Consensus       139 ql~L~~~~~~~~n~V---N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r  215 (296)
T KOG0502|consen  139 QLHLDVVDLLVNNKV---NACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR  215 (296)
T ss_pred             HHHHHHHHHHhhccc---cCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc
Confidence            999988888776543   37899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccccc
Q 005095          323 HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL  402 (715)
Q Consensus       323 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~  402 (715)
                      +.++ |..|.+|-|||-+|+                                                            
T Consensus       216 ~vdV-NvyDwNGgTpLlyAv------------------------------------------------------------  234 (296)
T KOG0502|consen  216 EVDV-NVYDWNGGTPLLYAV------------------------------------------------------------  234 (296)
T ss_pred             CCCc-ceeccCCCceeeeee------------------------------------------------------------
Confidence            8886 677776666665555                                                            


Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHH
Q 005095          403 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLH  482 (715)
Q Consensus       403 ~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh  482 (715)
                                  +.||.++|+.|++.|++ ++..|..|++++..|+..|.. +|+..+++-+++..    +|..-+||+|
T Consensus       235 ------------rgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~----Q~~~~~~~~~  296 (296)
T KOG0502|consen  235 ------------RGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLC----QDSEKRTPLH  296 (296)
T ss_pred             ------------cCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHh----hcccCCCCCC
Confidence                        45678899999999999 788899999999999999987 99999998888775    8999999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-26  Score=245.38  Aligned_cols=248  Identities=20%  Similarity=0.218  Sum_probs=209.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCc------------cchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC
Q 005095          165 APLHLAALKGDWDFARNFFNLNP------------EAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV  232 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~------------~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~  232 (715)
                      +-|..|+..|+.+.+..||+...            +..+. +|.+|.|+||.||.+|+.+++++|++  ..+-++..|..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~-qd~~gfTalhha~Lng~~~is~llle--~ea~ldl~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNL-QDYSGFTLLHHAVLNGQNQISKLLLD--YEALLDLCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccc-cCccchhHHHHHHhcCchHHHHHHhc--chhhhhhhhcc
Confidence            46788999999999999997532            23333 48899999999999999999999999  78888889999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCC
Q 005095          233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  312 (715)
Q Consensus       233 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~  312 (715)
                      |.+|||+|+++|+.|++++|+.++..++ ..+..|.||||.|++.||.++|.+|+++|+|+-.+++.+.|+|.+|++.|.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence            9999999999999999999999996554 889999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHH
Q 005095          313 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  392 (715)
Q Consensus       313 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l  392 (715)
                      .++++.|++..-..  ..+.          ..                                                
T Consensus       161 ~~Vvq~ll~~~~~~--~~~~----------~~------------------------------------------------  180 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPV--QSSL----------RV------------------------------------------------  180 (854)
T ss_pred             hHHHHHHhhhccch--hhcc----------cC------------------------------------------------
Confidence            99999999872221  1100          00                                                


Q ss_pred             hcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcc
Q 005095          393 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY  472 (715)
Q Consensus       393 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~  472 (715)
                         +  -..++-.+.+|||+|+++||.++++.|++.|-| +|....+| |+||.|+..|..++|.+|++.|.+..+    
T Consensus       181 ---~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~~gin~h~----  249 (854)
T KOG0507|consen  181 ---G--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHI----  249 (854)
T ss_pred             ---C--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHhhcccccc----
Confidence               1  112234567889999999999999999999999 67766666 899999999999999999999988874    


Q ss_pred             cCCCCchHHHHhhhh
Q 005095          473 KDENNNNMLHLAGKL  487 (715)
Q Consensus       473 ~d~~G~TpLh~A~~~  487 (715)
                      +|.+|+|+|.+-...
T Consensus       250 ~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  250 KNQHGQTALDIIIDL  264 (854)
T ss_pred             ccccchHHHHHHHhc
Confidence            899999999877543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-26  Score=248.71  Aligned_cols=293  Identities=19%  Similarity=0.169  Sum_probs=252.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCChHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NKVGNTALCFAA  241 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~-d~~G~TpLh~Aa  241 (715)
                      -.|+|-.||..||.|+|+.|+.++.. +..+ |+.|.+||.+|+-.||..+|+.|+.  +.++++++ |..+.|+|-+||
T Consensus       757 ~~t~LT~acaggh~e~vellv~rgan-iehr-dkkgf~plImaatagh~tvV~~llk--~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGAN-IEHR-DKKGFVPLIMAATAGHITVVQDLLK--AHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhccc-cccc-ccccchhhhhhcccCchHHHHHHHh--hhhhhhhhcccccCceEEEec
Confidence            45899999999999999999876544 4444 8999999999999999999999999  78888764 668999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc--cccccHHHHHHHcCChhHHHHH
Q 005095          242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--EDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~--~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      ..|..++|++||.+|++-. .++-...|||.+|...|..++++.|+.+|+++|.+.  .-|..||.+|..+||.+.++.|
T Consensus       833 sggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            9999999999999999875 788889999999999999999999999999998875  4588999999999999999999


Q ss_pred             HhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccc
Q 005095          320 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  399 (715)
Q Consensus       320 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~  399 (715)
                      ++.+.++......+-+|+|-+|+-.|+.                                  +.+..|+..     .+++
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~----------------------------------evv~lLLa~-----~anv  952 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRP----------------------------------EVVFLLLAA-----QANV  952 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcc----------------------------------hHHHHHHHH-----hhhh
Confidence            9999998555667889999999988863                                  666666655     4566


Q ss_pred             cccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCc
Q 005095          400 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD-DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNN  478 (715)
Q Consensus       400 ~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~  478 (715)
                      ..+-++|.|||+-++..|.+|+=++||..|+|.....- ....|+|-+++..||.+.|+.|++..+.+++    +|++|+
T Consensus       953 ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v----~NkkG~ 1028 (2131)
T KOG4369|consen  953 EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRV----PNKKGC 1028 (2131)
T ss_pred             hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceec----ccCCCC
Confidence            67778999999999999999999999999999433222 3455999999999999999999999888886    999999


Q ss_pred             hHHHHhhhhCCCCc--cccCCCchhhh
Q 005095          479 NMLHLAGKLAPPDR--LKIDSGAALQL  503 (715)
Q Consensus       479 TpLh~A~~~~~~~~--l~l~~ga~~~~  503 (715)
                      |+|.+|+..|+...  ++++++++..+
T Consensus      1029 T~Lwla~~Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen 1029 TVLWLASAGGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred             cccchhccCCccccchHHhhcccChhh
Confidence            99999999988763  55666666543

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=4.1e-25  Score=193.80  Aligned_cols=109  Identities=42%  Similarity=0.721  Sum_probs=96.9

Q ss_pred             hhhHHhhhhhHHHHHHHHHHHHhHhhccCCCCCCCC---CCccccccCc-ceeehhhhhHHHHHHHHHHHHHHHHHHhcc
Q 005095          548 EKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDS---TGRPIFLHYK-SFMVFAVSDALALFCSATSILMFLSIITSR  623 (715)
Q Consensus       548 ~~~~k~~~~s~~vvA~LIATvtFaA~ft~PGG~~~~---~G~~~~~~~~-~f~~F~i~n~ia~~~S~~~~~~~~~~~~~~  623 (715)
                      +||+++++++++|||+|||||||+|+|||||||+++   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999764   6999999888 999999999999999999998877422   


Q ss_pred             ccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005095          624 YAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIV  662 (715)
Q Consensus       624 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~v  662 (715)
                         .++.+..++.+.++..+|++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               344455667788899999999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1e-24  Score=200.09  Aligned_cols=263  Identities=16%  Similarity=0.111  Sum_probs=203.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      ..+..+...|-.+.-..|.......    .+..|..-+-.|.+.|+.+++..++.. ....+...+.+|..++|.|+-.|
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s~~----~~~lge~~~~~~~~s~nsd~~v~s~~~-~~~~~~~t~p~g~~~~~v~ap~~  107 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEISAL----RNALGESLLTVAVRSGNSDVAVQSAQL-DPDAIDETDPEGWSALLVAAPCG  107 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHHHH----HHhcCCcccchhhhcCCcHHHHHhhcc-CCCCCCCCCchhhhhhhhcCCCC
Confidence            4677777777776666666443322    256677777788888888887777764 33344455666888888888888


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCc
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  324 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  324 (715)
                      +.+.+..++.+|+..+ ..+.-+++|+.+++...+.+.+..+.++  .+|..|+.|.|||.+|+..|++++|++|++.|+
T Consensus       108 s~~k~sttltN~~rgn-evs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GA  184 (296)
T KOG0502|consen  108 SVDKVSTTLTNGARGN-EVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGA  184 (296)
T ss_pred             CcceeeeeecccccCC-ccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCC
Confidence            8888888888887775 6777788888888888888777766653  456778888888888888888888888888877


Q ss_pred             ccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccccccc
Q 005095          325 QLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR  404 (715)
Q Consensus       325 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~  404 (715)
                      +. .                                                                        ...+
T Consensus       185 dp-~------------------------------------------------------------------------~lgk  191 (296)
T KOG0502|consen  185 DP-D------------------------------------------------------------------------ALGK  191 (296)
T ss_pred             Ch-h------------------------------------------------------------------------hhhh
Confidence            64 1                                                                        1112


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHh
Q 005095          405 KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  484 (715)
Q Consensus       405 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A  484 (715)
                      ...++|.+|+..|..++|++|+++++| +|..|-+|-|||-+|++.++.++++.|++.|++++.    .|..|++++.+|
T Consensus       192 ~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~----e~dsGy~~mdlA  266 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ----EDDSGYWIMDLA  266 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCCccc----ccccCCcHHHHH
Confidence            346789999999999999999999999 899999999999999999999999999999999984    899999999999


Q ss_pred             hhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-chhHhhhhcCCCCchh
Q 005095          485 GKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSEGRTPHI  534 (715)
Q Consensus       485 ~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~Tpl~  534 (715)
                      +..|+.                     .|+.++. -..++.+|+.-+||+|
T Consensus       267 ValGyr---------------------~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  267 VALGYR---------------------IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHhhhH---------------------HHHHHHHHHHHHHhhcccCCCCCC
Confidence            998852                     3444444 3456788888888875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.7e-23  Score=247.03  Aligned_cols=177  Identities=18%  Similarity=0.185  Sum_probs=143.6

Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHH
Q 005095          230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID  309 (715)
Q Consensus       230 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  309 (715)
                      +.++.++||.||..|+.++++.|+++|++++ .+|.+|.||||+|+..|+.+++++|+++|+++|.+|.+|.||||.|+.
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            3456677888888888888888888888775 677788888888888888888888888888888888888888888888


Q ss_pred             cCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHH
Q 005095          310 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  389 (715)
Q Consensus       310 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~  389 (715)
                      .|+.+++++|++.++.. +                                                             
T Consensus       601 ~g~~~iv~~L~~~~~~~-~-------------------------------------------------------------  618 (823)
T PLN03192        601 AKHHKIFRILYHFASIS-D-------------------------------------------------------------  618 (823)
T ss_pred             hCCHHHHHHHHhcCccc-C-------------------------------------------------------------
Confidence            88888888777543321 0                                                             


Q ss_pred             HHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhh
Q 005095          390 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLI  469 (715)
Q Consensus       390 ~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l  469 (715)
                                   ...+.++||.|+.+|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++++. 
T Consensus       619 -------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~-  683 (823)
T PLN03192        619 -------------PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK-  683 (823)
T ss_pred             -------------cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-
Confidence                         01345789999999999999999999999 789999999999999999999999999999999884 


Q ss_pred             hcccCCCC-chHHHHhhhh
Q 005095          470 ASYKDENN-NNMLHLAGKL  487 (715)
Q Consensus       470 ~~~~d~~G-~TpLh~A~~~  487 (715)
                         +|..| .||++++...
T Consensus       684 ---~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        684 ---ANTDDDFSPTELRELL  699 (823)
T ss_pred             ---CCCCCCCCHHHHHHHH
Confidence               78888 9999988654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.8e-23  Score=246.66  Aligned_cols=177  Identities=17%  Similarity=0.119  Sum_probs=160.8

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHH
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      .+..+.++||.||..|+.++++.|++.+.+ ++.. |.+|+||||+||..|+.++|++|++  +|+++|.+|.+|+||||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~--~gadin~~d~~G~TpL~  596 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD-PDIG-DSKGRTPLHIAASKGYEDCVLVLLK--HACNVHIRDANGNTALW  596 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCC-CCCCCCHHHHHHHcChHHHHHHHHh--cCCCCCCcCCCCCCHHH
Confidence            344567999999999999999999976554 4554 8999999999999999999999999  89999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHH
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  318 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~  318 (715)
                      +|+..|+.+++++|++.++...   ...|.+|||.|+..|+.+++++|+++|+|+|.+|.+|.||||.|+..|+.+++++
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            9999999999999998877542   3567899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCcccceecCCCC-CCHHHHHHh
Q 005095          319 LIQHHPQLAMARDGNG-ETALHVLAR  343 (715)
Q Consensus       319 Ll~~~~~~~~~~d~~g-~tpLh~A~~  343 (715)
                      |+++|+++ +..|..| .||++.+..
T Consensus       674 Ll~~GAdv-~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 LIMNGADV-DKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHcCCCC-CCCCCCCCCCHHHHHHH
Confidence            99999996 7888887 999988765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=9.6e-24  Score=247.76  Aligned_cols=232  Identities=17%  Similarity=0.157  Sum_probs=178.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHH-HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC-FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh-~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      ..++.+++.|++.|+.+.|+.+++...+.++|..|..|+|||| .|+.+++.+++++|+++|+     ++..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            3567899999999999999999993228899999999999999 8999999999999999986     567899999999


Q ss_pred             HHcC---CHHHHHHHHhcCCC------CC----ccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHH
Q 005095          275 ALLG---HKEMIWYLYSVTKE------ED----LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL  341 (715)
Q Consensus       275 ~~~g---~~~iv~~Ll~~ga~------~~----~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  341 (715)
                      +..+   ..++++.+.+.+.+      ++    .....|.||||.|+.+|+.++++.|+++|+++ +.++... .     
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~-~-----  162 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGD-F-----  162 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCc-h-----
Confidence            9732   23344555544432      11    12346999999999999999999999999986 3222111 0     


Q ss_pred             HhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHH
Q 005095          342 ARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEF  421 (715)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~ei  421 (715)
                      +..+.                                                 .   ......|.||||.|+..|+.++
T Consensus       163 ~~~~~-------------------------------------------------~---~~~~~~g~tpL~~Aa~~~~~~i  190 (743)
T TIGR00870       163 FVKSQ-------------------------------------------------G---VDSFYHGESPLNAAACLGSPSI  190 (743)
T ss_pred             hhcCC-------------------------------------------------C---CCcccccccHHHHHHHhCCHHH
Confidence            00000                                                 0   0112468899999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHHhC---------CHHHHHHHHHcCcchh---hhhcccCCCCchHHHHhhhhCC
Q 005095          422 LMVLIQMYPNLIWKVDDHSRSMFHIAVVHR---------QEKIFNLIYELGAHKD---LIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       422 v~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~---------~~~iv~~Ll~~ga~~~---~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      +++|+++|+| ++.+|..|+||||+|+..+         ...+.+++++.++...   .+.+.+|.+|.||||+|++.|+
T Consensus       191 v~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~  269 (743)
T TIGR00870       191 VALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR  269 (743)
T ss_pred             HHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC
Confidence            9999999998 7889999999999999986         2346667776655531   1223489999999999999998


Q ss_pred             CCc
Q 005095          490 PDR  492 (715)
Q Consensus       490 ~~~  492 (715)
                      .+.
T Consensus       270 ~~l  272 (743)
T TIGR00870       270 IVL  272 (743)
T ss_pred             ccH
Confidence            773

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-23  Score=221.40  Aligned_cols=235  Identities=20%  Similarity=0.211  Sum_probs=182.4

Q ss_pred             cccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 005095          154 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG  233 (715)
Q Consensus       154 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G  233 (715)
                      ...+..|.+|+|+||.|+.+|+.++++.|++..+... .. |..|.+|||+|+..|+.|+|+.|+.  .+..+|..+..|
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~-d~kg~~plhlaaw~g~~e~vkmll~--q~d~~na~~~e~  115 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LC-DTKGILPLHLAAWNGNLEIVKMLLL--QTDILNAVNIEN  115 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh-hh-hccCcceEEehhhcCcchHHHHHHh--cccCCCcccccC
Confidence            3567788899999999999999999999887765433 33 6899999999999999999999999  788999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCCh
Q 005095          234 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY  313 (715)
Q Consensus       234 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  313 (715)
                      .||||.|+..||.+++.+|+.+|++.. .+|+.+.|+|.+|++.|..++|+.|++..-+.  .                 
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~--~-----------------  175 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEVVQMLLQKKFPV--Q-----------------  175 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHHHHHHhhhccch--h-----------------
Confidence            999999999999999999999999986 89999999999999999999999999862111  0                 


Q ss_pred             hHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHh
Q 005095          314 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL  393 (715)
Q Consensus       314 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~  393 (715)
                          .+...+ +  ..++..+.+|||.|+++|+                                  .++++.|++.   
T Consensus       176 ----~~~~~~-~--~~~~~~~~~plHlaakngh----------------------------------~~~~~~ll~a---  211 (854)
T KOG0507|consen  176 ----SSLRVG-D--IKRPFPAIYPLHLAAKNGH----------------------------------VECMQALLEA---  211 (854)
T ss_pred             ----hcccCC-C--CCCCCCCcCCcchhhhcch----------------------------------HHHHHHHHhc---
Confidence                011112 1  2445566666666666665                                  2444444444   


Q ss_pred             cCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHh---CCHHHHHHHH
Q 005095          394 LDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH---RQEKIFNLIY  460 (715)
Q Consensus       394 ~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~---~~~~iv~~Ll  460 (715)
                        +.++|.....| |+||.|+..|..++|.+|++.|.+ ...+|.+|+|+|.+-...   ...+++-++.
T Consensus       212 --g~din~~t~~g-talheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  212 --GFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             --CCCcccccccc-hhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence              33444444444 788888888888999999988888 778888899988876643   3445554444

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=5.1e-23  Score=213.45  Aligned_cols=86  Identities=22%  Similarity=0.213  Sum_probs=78.3

Q ss_pred             cccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCC
Q 005095          396 DSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDE  475 (715)
Q Consensus       396 ~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~  475 (715)
                      +...+..+..|.|+||.|+.+|..++.++|+++|.+ ++.+|.+||||||.|+..|+.+++++|+++|++.+.    +..
T Consensus       188 G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~----~t~  262 (527)
T KOG0505|consen  188 GAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA----KTK  262 (527)
T ss_pred             cccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhhcccch----hhh
Confidence            444555556699999999999999999999999999 889999999999999999999999999999999984    899


Q ss_pred             CCchHHHHhhh
Q 005095          476 NNNNMLHLAGK  486 (715)
Q Consensus       476 ~G~TpLh~A~~  486 (715)
                      .|.||+.+|..
T Consensus       263 ~g~~p~dv~de  273 (527)
T KOG0505|consen  263 MGETPLDVADE  273 (527)
T ss_pred             cCCCCccchhh
Confidence            99999999975

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=2e-22  Score=198.36  Aligned_cols=163  Identities=25%  Similarity=0.319  Sum_probs=116.2

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCcccccc
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA-----RRTLFVQELVNLMTPEDLALR  229 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~g~~i~~~  229 (715)
                      -+|..|.+|+|+||||+.+++.++|+.||+.+..+++.. |+-|.||+++|+..     .+.++|..|...   .|+|++
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaK  335 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAK  335 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchh
Confidence            466677777777777777777777777777776666554 67777777777754     356677777662   355555


Q ss_pred             cC-CCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCccccccccHHHHH
Q 005095          230 NK-VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV-TKEEDLKEEDRIELLVAV  307 (715)
Q Consensus       230 d~-~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A  307 (715)
                      -. .|+|+|++|+..|+.++|+.||..|+|+| .+|.+|.|+|++||++||.|+|++||.. ++|....|.+|.|+|..|
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence            43 67777777777777777777777777775 6777777777777777777777777754 467777777777777777


Q ss_pred             HHcCChhHHHHHHhh
Q 005095          308 IDAGLYDVALDLIQH  322 (715)
Q Consensus       308 ~~~g~~~iv~~Ll~~  322 (715)
                      ...||-||.-.|..+
T Consensus       415 leagh~eIa~mlYa~  429 (452)
T KOG0514|consen  415 LEAGHREIAVMLYAH  429 (452)
T ss_pred             HhcCchHHHHHHHHH
Confidence            777777777666544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.7e-21  Score=191.95  Aligned_cols=154  Identities=20%  Similarity=0.255  Sum_probs=139.8

Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHc-----CcHHHHHHHHhcCCCCCccCCC
Q 005095          191 CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS-----GVTKIAEVMVNKNRELPSIRGN  265 (715)
Q Consensus       191 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~-----g~~~iv~~Ll~~g~~~~~~~d~  265 (715)
                      |.. |.+|+|+||||+..+++++|+.||+. .-++++.+|.-|+||+++|+..     .+.++|..|.+.| ++|.....
T Consensus       262 Nla-DsNGNTALHYsVSHaNF~VV~~LLDS-gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  262 NLA-DSNGNTALHYAVSHANFDVVSILLDS-GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             hhh-cCCCCeeeeeeecccchHHHHHHhcc-CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            444 89999999999999999999999994 4479999999999999999865     4788999999876 45545677


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCC
Q 005095          266 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  345 (715)
Q Consensus       266 ~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  345 (715)
                      .|+|+|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|++|+++||.||+++||..........|.+|.|+|.+|...|
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999877767899999999999999998


Q ss_pred             CC
Q 005095          346 SA  347 (715)
Q Consensus       346 ~~  347 (715)
                      +.
T Consensus       419 h~  420 (452)
T KOG0514|consen  419 HR  420 (452)
T ss_pred             ch
Confidence            73

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=6.4e-21  Score=181.52  Aligned_cols=130  Identities=14%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcC----CCcccccccCCCChHHHHHHHcCc----HHHHHHHHhcCCCCCccCC-C
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLM----TPEDLALRNKVGNTALCFAAVSGV----TKIAEVMVNKNRELPSIRG-N  265 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~----~g~~i~~~d~~G~TpLh~Aa~~g~----~~iv~~Ll~~g~~~~~~~d-~  265 (715)
                      |..|.||||+|++.|+.++++.|+...    .|++++.+|..|+||||+|+..|+    .+++++|+++|++++ .++ .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-AQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CCCcC
Confidence            677888888888888888888875421    357788888888888888888887    478888888888876 555 3


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcc
Q 005095          266 KGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  325 (715)
Q Consensus       266 ~g~tpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  325 (715)
                      .|.||||+|+..++.+++++|++ .|++++.++.+|.||||.|+..++.++++.|++.++.
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            78888888888888888888886 4888888888888888888888888888888877654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=6.4e-21  Score=180.63  Aligned_cols=141  Identities=17%  Similarity=0.070  Sum_probs=113.1

Q ss_pred             cccCCCCCChHHHHHHHcCCHH----HHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHH---HHHHHhcCCCccccc
Q 005095          156 VERNCFTSYAPLHLAALKGDWD----FARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLF---VQELVNLMTPEDLAL  228 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~----~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~i---v~~Ll~~~~g~~i~~  228 (715)
                      ++..+.++.++||.||+.|+.+    ++++|++ .+..++. .|..|+||||+|+..|+.+.   +++|++  .|++++.
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~--~Gadin~   88 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVN--MGADINA   88 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHH--cCCCCCC
Confidence            3345566778999999999984    4444443 3344444 38889999999999888654   788998  7999999


Q ss_pred             cc-CCCChHHHHHHHcCcHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccc
Q 005095          229 RN-KVGNTALCFAAVSGVTKIAEVMVN-KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI  301 (715)
Q Consensus       229 ~d-~~G~TpLh~Aa~~g~~~iv~~Ll~-~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  301 (715)
                      +| ..|+||||+|+..|+.+++++|++ .|+++. .+|..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            88 489999999999999999999995 788886 6888999999999999999999999999999888877664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=6.7e-21  Score=180.48  Aligned_cols=137  Identities=12%  Similarity=0.007  Sum_probs=123.8

Q ss_pred             CCCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHH---HHHHHhcCCCCCccCC-CC
Q 005095          195 SRNQDTALHIAAGARRT----LFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKI---AEVMVNKNRELPSIRG-NK  266 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~i---v~~Ll~~g~~~~~~~d-~~  266 (715)
                      +.++.++||.||+.|+.    +++++|++  .|++++.+|..|+||||+|+..|+.++   +++|+++|++++ .++ ..
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~--~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-~~d~~~   93 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISG--DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-ARELGT   93 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhh--cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            67788999999999998    66667777  789999999999999999999988654   899999999997 676 58


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCC
Q 005095          267 GATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE  335 (715)
Q Consensus       267 g~tpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  335 (715)
                      |.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++.+++++|++++++. +.++..|.
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~  162 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIGL  162 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCCc
Confidence            9999999999999999999995 89999999999999999999999999999999999986 67776664

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=7e-21  Score=181.25  Aligned_cols=134  Identities=19%  Similarity=0.204  Sum_probs=118.5

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhC-----ccchhhccCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCcc
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLN-----PEAVCVRISRNQDTALHIAAGARR----TLFVQELVNLMTPED  225 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~-----~~~~~~~~d~~g~TpLh~Aa~~g~----~~iv~~Ll~~~~g~~  225 (715)
                      .++.++..|.||||+||..|+.++++.|+...     +..++.+ |..|+||||+|+..|+    .+++++|++  .|++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~--~gad   89 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIE--LGAD   89 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHH--cCCC
Confidence            34567788999999999999999999886432     3445554 8999999999999999    589999999  8999


Q ss_pred             cccccC-CCChHHHHHHHcCcHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 005095          226 LALRNK-VGNTALCFAAVSGVTKIAEVMVN-KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  292 (715)
Q Consensus       226 i~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~-~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~  292 (715)
                      ++.+|. +|+||||+|+..++.+++++|++ .|++++ .+|.+|.||||+|+..|+.+++++|++.++.
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999985 99999999999999999999998 588886 8899999999999999999999999998754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=3.5e-21  Score=199.85  Aligned_cols=229  Identities=21%  Similarity=0.204  Sum_probs=157.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 005095          201 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       201 pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      .+.-|+..|..+-|+.|+.  .|++++..|.+|.|+||-++...+.+||++|+++|++++ ..|..|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~--~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLN--RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhc--cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcchhhcccccH
Confidence            3556677788888888888  677778888888888888888888888888888888876 6778888888888888888


Q ss_pred             HHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhh
Q 005095          281 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRC  360 (715)
Q Consensus       281 ~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l  360 (715)
                      .++++|+++|+++...+.+|..|+..+...-..+++..-..          ..|.+  .-+++.                
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~----------r~gi~--iea~R~----------------  171 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMA----------RQGID--IEAARK----------------  171 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHH----------Hhccc--HHHHhh----------------
Confidence            88888888888776666666655544332222111111110          00111  000000                


Q ss_pred             hhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC
Q 005095          361 IYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS  440 (715)
Q Consensus       361 l~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G  440 (715)
                                           .                      .-.+-|+        ++ +..+..|.+ ...++..|
T Consensus       172 ---------------------~----------------------~e~~ml~--------D~-~q~l~~G~~-~d~~~~rG  198 (527)
T KOG0505|consen  172 ---------------------A----------------------EEQTMLD--------DA-RQWLNAGAE-LDARHARG  198 (527)
T ss_pred             ---------------------h----------------------hHHHHHH--------HH-HHHHhcccc-cccccccc
Confidence                                 0                      0000111        22 233446666 66777779


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCC--ccccCCCchhhhHHHhhhHHHHHHhhc
Q 005095          441 RSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQLRRELHWFKEIEKVVQ  518 (715)
Q Consensus       441 ~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~--~l~l~~ga~~~~~~~l~~~~~v~~ll~  518 (715)
                      .|.||+|+.+|..++.++|++.|.++++    +|.+|+||||.|+.-|..+  .+++.+|                    
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~----~D~dgWtPlHAAA~Wg~~~~~elL~~~g--------------------  254 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVNI----KDYDGWTPLHAAAHWGQEDACELLVEHG--------------------  254 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCccc----ccccCCCcccHHHHhhhHhHHHHHHHhh--------------------
Confidence            9999999999999999999999999985    9999999999999877643  2333333                    


Q ss_pred             chhHhhhhcCCCCchhhhHH
Q 005095          519 PSYREAKNSEGRTPHILFSE  538 (715)
Q Consensus       519 ~~~~~~~n~~G~Tpl~~a~~  538 (715)
                       .+.+.++..|.||++++.+
T Consensus       255 -a~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  255 -ADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             -cccchhhhcCCCCccchhh
Confidence             4558888999999999876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=8.8e-21  Score=177.94  Aligned_cols=135  Identities=19%  Similarity=0.163  Sum_probs=104.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhh----CccchhhccCCCCCcHHHHHHHcCCH---HHHHHHHhcCCCccccc
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNL----NPEAVCVRISRNQDTALHIAAGARRT---LFVQELVNLMTPEDLAL  228 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~----~~~~~~~~~d~~g~TpLh~Aa~~g~~---~iv~~Ll~~~~g~~i~~  228 (715)
                      .+..|.+|.||||+||..|+...+..+...    .+..+. ..|.+|+||||+|+..|+.   +++++|++  .|++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~-~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~--~gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVL-EYNRHGKQCVHIVSNPDKADPQEKLKLLME--WGADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHH-HhcCCCCEEEEeecccCchhHHHHHHHHHH--cCCCccc
Confidence            455677889999999999984322111111    111122 2478899999999999886   46788888  7899998


Q ss_pred             ccC-CCChHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Q 005095          229 RNK-VGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEED  294 (715)
Q Consensus       229 ~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~  294 (715)
                      +|. .|+||||+|+..|+.+++++|+++ |++++ .+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            884 899999999999999999999974 78875 788899999999999999999999999888764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=8.6e-20  Score=186.12  Aligned_cols=139  Identities=12%  Similarity=0.079  Sum_probs=99.8

Q ss_pred             CCCCCc-HHHHHHHcCCHHHHHHHHhcCCCccccccc----CCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCC
Q 005095          195 SRNQDT-ALHIAAGARRTLFVQELVNLMTPEDLALRN----KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT  269 (715)
Q Consensus       195 d~~g~T-pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d----~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~t  269 (715)
                      |..|.| |||.|+..|+.+++++|++  +|++++.++    ..|.||||+|+..|+.+++++|+++|++++...+..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~--~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILK--LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHH--CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            555554 4555666677888888887  778877763    478888888888888888888888888776323456788


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHH
Q 005095          270 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL  341 (715)
Q Consensus       270 pLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  341 (715)
                      |||+|+..|+.+++++|+++|++++.+|.+|.||||.|+..++.+++..+..      ...+..+.+|++++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  172 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL  172 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh
Confidence            8888888888888888888888888888888888888877777776655542      12355666777754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.5e-19  Score=160.39  Aligned_cols=108  Identities=22%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             HHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcH
Q 005095          167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVT  246 (715)
Q Consensus       167 Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~  246 (715)
                      +.+|+..|.+..|+.||+..+..++.+ |.+|.||||-|+.+||.+||+.|+.  .|++++++...|+||||-||..++.
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~--~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLL--SGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHHHHHH--ccCCcccccccCccchhhhhcccch
Confidence            445555555555555555554444443 5555555555555555555555555  4555555555555555555555555


Q ss_pred             HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 005095          247 KIAEVMVNKNRELPSIRGNKGATPLCMAALLG  278 (715)
Q Consensus       247 ~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g  278 (715)
                      +++..|+++|+|++ .......||||+||...
T Consensus       144 ~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~r  174 (228)
T KOG0512|consen  144 EVAGRLLQHGADVN-AQTKGLLTPLHLAAGNR  174 (228)
T ss_pred             hHHHHHHhccCccc-ccccccchhhHHhhccc
Confidence            55555555555554 34444445555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=6.3e-20  Score=172.16  Aligned_cols=130  Identities=11%  Similarity=0.020  Sum_probs=110.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcC-----CCcccccccCCCChHHHHHHHcCcH---HHHHHHHhcCCCCCccCC-
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLM-----TPEDLALRNKVGNTALCFAAVSGVT---KIAEVMVNKNRELPSIRG-  264 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~-----~g~~i~~~d~~G~TpLh~Aa~~g~~---~iv~~Ll~~g~~~~~~~d-  264 (715)
                      .|.+|.||||+||+.|+.  ++++....     .+..++.+|.+|.||||+|+..|+.   +++++|+++|++++ .++ 
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-~~~~   89 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-GKER   89 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-ccCC
Confidence            478999999999999984  33333210     1122456789999999999999986   57899999999997 566 


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCccccccccHHHHHHHcCChhHHHHHHhhCccc
Q 005095          265 NKGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL  326 (715)
Q Consensus       265 ~~g~tpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  326 (715)
                      ..|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|++.+++.
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            589999999999999999999998 59999999999999999999999999999999998763

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=3.7e-19  Score=181.46  Aligned_cols=155  Identities=14%  Similarity=0.103  Sum_probs=130.2

Q ss_pred             cCCCCCCh-HHHHHHHcCCHHHHHHHHhhCccchhhc---cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CC
Q 005095          158 RNCFTSYA-PLHLAALKGDWDFARNFFNLNPEAVCVR---ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KV  232 (715)
Q Consensus       158 ~~~~~g~T-~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~---~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d-~~  232 (715)
                      .+|..|+| +||.|+..|+.+++++|++.+++ ++.+   .+..|.||||+|+..|+.+++++|++  +|++++.++ ..
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~--~GADVN~~~~~~  103 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR--YGADVNRYAEEA  103 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCcCcccCCC
Confidence            35555554 67778888999999999987764 4443   14589999999999999999999999  899999864 58


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCC
Q 005095          233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  312 (715)
Q Consensus       233 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~  312 (715)
                      |.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|++.++.+++..+...+     .+..+.+|++++   ++
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~n  174 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICDNE-----ISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcCCc-----ccccccChhhhh---cc
Confidence            9999999999999999999999999997 79999999999999999999887765322     355667888865   46


Q ss_pred             hhHHHHHHhhCc
Q 005095          313 YDVALDLIQHHP  324 (715)
Q Consensus       313 ~~iv~~Ll~~~~  324 (715)
                      .++++.|+.+..
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            899999999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=6.5e-19  Score=156.29  Aligned_cols=160  Identities=21%  Similarity=0.156  Sum_probs=138.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 005095          201 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       201 pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      -+.+|+..+...-|+.||+. ..--+|.+|.+|.||||-|+.+|+.+||+.|+..|++.. .+...|+||||-||..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccchhhhhcccch
Confidence            57899999999999999995 555689999999999999999999999999999999986 7888999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccccccHHHHHHHcCCh-hHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhh
Q 005095          281 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY-DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR  359 (715)
Q Consensus       281 ~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~  359 (715)
                      +++-+|+++|+|+|+......||||.|+...+. +.+++|+....-.+..++..+.||+.+|-+.+-   +...++.++-
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~---s~~lfe~~e~  220 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM---SHYLFEIVEG  220 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh---hHHHHHHHHH
Confidence            999999999999999999999999999987664 566777766555566778899999999998754   3345677777


Q ss_pred             hhhcCC
Q 005095          360 CIYSVP  365 (715)
Q Consensus       360 ll~~~~  365 (715)
                      |....|
T Consensus       221 ~~~~~~  226 (228)
T KOG0512|consen  221 CMNSSP  226 (228)
T ss_pred             HhhCCC
Confidence            765544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=7.2e-19  Score=167.93  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=53.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |..|.+|||+||+.||..+|+.|+.  .|+.+|..|....||||+|+..||.+||+.|++..+|++ ..|..|.||||||
T Consensus        31 ddhgfsplhwaakegh~aivemll~--rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn-avnehgntplhya  107 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLS--RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN-AVNEHGNTPLHYA  107 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHh--cccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc-hhhccCCCchhhh
Confidence            4444455555555555555555544  444444444444455555555555555555554444443 4444455555555


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHH
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA  306 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~  306 (715)
                      |..|...+.+-|+..|+-+++.+++|.|||.-
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldk  139 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDK  139 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhh
Confidence            55554444455555554444444444444443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=2.6e-16  Score=171.60  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=83.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCc--------cchhhccCCCCCcHHHHHHH---cCCHHHHHHHHhcCCCccccc----c
Q 005095          165 APLHLAALKGDWDFARNFFNLNP--------EAVCVRISRNQDTALHIAAG---ARRTLFVQELVNLMTPEDLAL----R  229 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~--------~~~~~~~d~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~g~~i~~----~  229 (715)
                      .++..|...|..+.+..++....        -.++.+ ...|+|.||.|..   .++.++++.|++. .+.-+|.    .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~-~p~lind~~~~e  180 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEI-FPKLINDIYTSE  180 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHH-hHHHhhhhhhhH
Confidence            47777777777777776664431        122221 3456666666665   2445666666664 2222221    1


Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCcc--------CC--------------CCCCCHHHHHHHcCCHHHHHHHH
Q 005095          230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI--------RG--------------NKGATPLCMAALLGHKEMIWYLY  287 (715)
Q Consensus       230 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~--------~d--------------~~g~tpLh~A~~~g~~~iv~~Ll  287 (715)
                      ...|.||||+|+.+.+.++|++|++.|+|++..        .|              ..|+.||-+||-.++.|++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            225666666666666666666666666665421        00              12445555555555555555555


Q ss_pred             hcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCc
Q 005095          288 SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  324 (715)
Q Consensus       288 ~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  324 (715)
                      ++|||++.+|..|+|.||..+..-..++-..+++.++
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga  297 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGA  297 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            5555555555555555555554444444444444433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=6.3e-18  Score=161.54  Aligned_cols=133  Identities=23%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q 005095          207 GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL  286 (715)
Q Consensus       207 ~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  286 (715)
                      +.|+.--|+.-|+. ..-|+|.-|..|.+|||+||+.|+..+|+.|+.+|+.++ ..|....||||+|+..||.++|+.|
T Consensus         9 regna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgarvn-~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    9 REGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN-STNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhcccccc-cccCCCCcchhhhhhcccHHHHHHH
Confidence            33443333433443 556889999999999999999999999999999999997 7888889999999999999999999


Q ss_pred             HhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHH
Q 005095          287 YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA  342 (715)
Q Consensus       287 l~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  342 (715)
                      ++..+|+|+.++.|.||||+||.-|+-.+++-|+..|+.+ +..+++|.|||..|-
T Consensus        87 l~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhc
Confidence            9999999999999999999999999999999999999996 899999999998764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=4.5e-17  Score=137.43  Aligned_cols=88  Identities=28%  Similarity=0.422  Sum_probs=47.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Q 005095          202 LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE  281 (715)
Q Consensus       202 Lh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~  281 (715)
                      ||+||+.|+.+++++|++  .+.+++.    |+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~--~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE--KGADINL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH--TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHH--CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHcCCHH
Confidence            455555555555555555  4444443    5555555555555555555555555553 45555555555555555555


Q ss_pred             HHHHHHhcCCCCCcc
Q 005095          282 MIWYLYSVTKEEDLK  296 (715)
Q Consensus       282 iv~~Ll~~ga~~~~~  296 (715)
                      ++++|+++|++++.+
T Consensus        74 ~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHTTT-TTSS
T ss_pred             HHHHHHHcCCCCCCc
Confidence            555555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=3.2e-16  Score=140.74  Aligned_cols=122  Identities=25%  Similarity=0.354  Sum_probs=68.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |.+|.||||+|+..|+.+++++|++  .+.+.+.++..|.||||+|+..++.+++++|++.|+.++ ..+..|.||+|+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~--~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLE--NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHH
Confidence            3445555555555555555555555  455545555555555555555555555555555555443 3445555555555


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      +..++.+++++|++++.+.+..+..|.||++.|...++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            555555555555555555555555555555555555555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=1.7e-16  Score=173.08  Aligned_cols=165  Identities=21%  Similarity=0.265  Sum_probs=148.0

Q ss_pred             ccccCCCCCChHHHHHHH---cCCHHHHHHHHhhCccchhhc---cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 005095          155 GVERNCFTSYAPLHLAAL---KGDWDFARNFFNLNPEAVCVR---ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL  228 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~---~g~~~~v~~LL~~~~~~~~~~---~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~  228 (715)
                      +++.++..|.|.||.|..   .++-++++.||+..+..++..   ....|.||||+|+.+.+.++|++|++  .|||+++
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~--~gADV~a  212 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA--AGADVHA  212 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH--cCCchhh
Confidence            677788899999999997   456689999998877655432   23569999999999999999999999  8999875


Q ss_pred             c---------c--------------CCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHH
Q 005095          229 R---------N--------------KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY  285 (715)
Q Consensus       229 ~---------d--------------~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  285 (715)
                      +         |              ..|+.||-+||-.++.||+++|+++|+|++ .+|..|.|.||..+..-..+|.++
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~  291 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDL  291 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC-ccccCCChHHHHHHHHHHHHHHHH
Confidence            3         1              147899999999999999999999999996 899999999999999999999999


Q ss_pred             HHhcCCC--CCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          286 LYSVTKE--EDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       286 Ll~~ga~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      ++++|++  ...++.+|.|||.+|+.-|..++.+.+++.
T Consensus       292 ~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  292 ALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999  889999999999999999999999999998

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=9.8e-16  Score=137.55  Aligned_cols=124  Identities=28%  Similarity=0.408  Sum_probs=113.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHH
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      .+.+|+||||.|+..|+.+++++|++.+... +. .+..|.||||.|+..++.+++++|++  .+.+++..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~-~~~~g~~~l~~a~~~~~~~~~~~ll~--~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NA-KDNDGRTPLHLAAKNGHLEIVKLLLE--KGADVNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-Cc-cCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCCHHH
Confidence            4577999999999999999999999876553 33 47899999999999999999999999  78889999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  287 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  287 (715)
                      +|+..++.+++++|++++.+.. ..+..|.||+++|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999998875 68899999999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=3.5e-16  Score=131.96  Aligned_cols=86  Identities=28%  Similarity=0.449  Sum_probs=77.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcH
Q 005095          167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVT  246 (715)
Q Consensus       167 Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~  246 (715)
                      ||+||+.|+.+++++|++.+.. +    +. |+||||+|+..|+.+++++|++  .|++++.+|.+|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~----~~-~~~~l~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-I----NL-GNTALHYAAENGNLEIVKLLLE--NGADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-T----TS-SSBHHHHHHHTTTHHHHHHHHH--TTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-C----CC-CCCHHHHHHHcCCHHHHHHHHH--hcccccccCCCCCCHHHHHHHcCCH
Confidence            7999999999999999986533 2    22 8999999999999999999999  8999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCC
Q 005095          247 KIAEVMVNKNRELP  260 (715)
Q Consensus       247 ~iv~~Ll~~g~~~~  260 (715)
                      +++++|+++|++++
T Consensus        73 ~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   73 EIVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHHTTT-TT
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.56  E-value=1.4e-14  Score=115.10  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=55.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCc
Q 005095          166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  245 (715)
Q Consensus       166 ~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~  245 (715)
                      -..+++++|..+.|+..+..+ .+++.  ...|++|||+||-+|+.+++++|+.  .|++++.+|+.|-|||.-|+..||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~--~~ggR~plhyAAD~GQl~ilefli~--iGA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNE--IYGGRTPLHYAADYGQLSILEFLIS--IGANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHH--HhCCcccchHhhhcchHHHHHHHHH--hccccCCccccCCcHHHHHHHHhh
Confidence            345556666666666555443 22332  2355666666666666666666666  566666666666666666666666


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHH
Q 005095          246 TKIAEVMVNKNRELPSIRGNKGATPL  271 (715)
Q Consensus       246 ~~iv~~Ll~~g~~~~~~~d~~g~tpL  271 (715)
                      .++|++|+++|++-. .+..+|.+.+
T Consensus        80 ~~cVklLL~~GAdrt-~~~PdG~~~~  104 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRT-IHAPDGTALI  104 (117)
T ss_pred             HHHHHHHHHcCcccc-eeCCCchhHH
Confidence            666666666665542 4444454433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=5.4e-14  Score=140.50  Aligned_cols=128  Identities=21%  Similarity=0.334  Sum_probs=121.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCc-----HHHHHHHHhcCC--CCCccCCCC
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV-----TKIAEVMVNKNR--ELPSIRGNK  266 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~-----~~iv~~Ll~~g~--~~~~~~d~~  266 (715)
                      .+..+.+++|.|+..+..+++++|+.  .|++++.+|..|.||||+|+..|+     .++++.|++.|+  +....+|..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLA--SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHH--cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            36678999999999999999999999  899999999999999999999999     999999999999  666678999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhC
Q 005095          267 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  323 (715)
Q Consensus       267 g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  323 (715)
                      |.||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999876

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=4.4e-14  Score=112.38  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=95.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  279 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~  279 (715)
                      --..+++++|..+-|+..+.  .|.++|..- .|+||||+|+..|+.+++++|+..|++++ .+|+.|.|||.-|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~--~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN--EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH--ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHHhh
Confidence            45778999999999999998  788887654 89999999999999999999999999997 799999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccccccHHHHH
Q 005095          280 KEMIWYLYSVTKEEDLKEEDRIELLVAV  307 (715)
Q Consensus       280 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  307 (715)
                      .++|++|+++|++-..+..+|.+.+..+
T Consensus        80 ~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999999998877654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=2.5e-13  Score=135.65  Aligned_cols=130  Identities=27%  Similarity=0.312  Sum_probs=117.7

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCC-----HHHHHHHHhcCCCc---ccc
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR-----TLFVQELVNLMTPE---DLA  227 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~-----~~iv~~Ll~~~~g~---~i~  227 (715)
                      ....+..+.+++|.++..++.+.+++++..+.+. +. .+..|.||||+|+..|+     .++++.|++  .|+   +.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~--~g~~~~~~~  141 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLE--AGADLDVNN  141 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-cc-ccCCCCcHHHHHHhcCCcccchHHHHHHHHH--cCCCCCCcc
Confidence            3445666889999999999999999888776655 54 49999999999999999     999999999  788   677


Q ss_pred             cccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 005095          228 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT  290 (715)
Q Consensus       228 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g  290 (715)
                      .+|..|+||||+|+..|+.+++++|++.|+++. .++..|.||++.|+..++.++++.+++.+
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            779999999999999999999999999999986 67999999999999999999999999976

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=8.8e-13  Score=99.37  Aligned_cols=54  Identities=28%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHH
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV  253 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  253 (715)
                      |+||||+||+.|+.+++++|++  .|.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~--~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE--HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH--TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5677777777777777777777  57777777777777777777777777777664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=8.7e-13  Score=136.18  Aligned_cols=120  Identities=22%  Similarity=0.142  Sum_probs=92.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      ..|.-|+..|.+++|+..+.+-. +... .+..|-|+||-|+..||.+||++||+  .|+++|+.|.+|+||||+||.++
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~-DpSq-pNdEGITaLHNAiCaghyeIVkFLi~--~ganVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVT-DPSQ-PNDEGITALHNAICAGHYEIVKFLIE--FGANVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhc-CCCC-CCccchhHHhhhhhcchhHHHHHHHh--cCCcccCccCCCCchhhhhhhcC
Confidence            34567888888888888875432 2222 36788888888888888888888888  78888888888888888888888


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHh
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYS  288 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~  288 (715)
                      ++.+++.|++.|+.+-..+-.++.||..-+  .+.|..++.+||..
T Consensus       628 nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            888888888888877655666778877654  34577778888764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=1.5e-12  Score=149.72  Aligned_cols=105  Identities=18%  Similarity=0.174  Sum_probs=93.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 005095          201 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       201 pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      +|+.|+..|+.+.|+.|++  .|+++|.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~--~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT--GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCcH
Confidence            5889999999999999999  899999999999999999999999999999999999986 7899999999999999999


Q ss_pred             HHHHHHHhc-------CCCCCccccccccHHHHHH
Q 005095          281 EMIWYLYSV-------TKEEDLKEEDRIELLVAVI  308 (715)
Q Consensus       281 ~iv~~Ll~~-------ga~~~~~~~~g~t~L~~A~  308 (715)
                      +++++|+++       |++.+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999988       8888888888877765443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=5.3e-13  Score=101.10  Aligned_cols=56  Identities=23%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             HHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHh
Q 005095          425 LIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  484 (715)
Q Consensus       425 Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A  484 (715)
                      ||++++..++.+|..|+||||+|+.+|+.+++++|++.|++++.    +|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~----~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA----KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC----CcCCCCCHHHhC
Confidence            57788555899999999999999999999999999999999985    999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=3.8e-12  Score=122.37  Aligned_cols=118  Identities=25%  Similarity=0.266  Sum_probs=88.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCChHHHHHHH
Q 005095          164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAV  242 (715)
Q Consensus       164 ~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~-d~~G~TpLh~Aa~  242 (715)
                      ..||..++..|+.+....||.. ...++.+ |.+|.|||..|+..|+.++|++||+  .|+|+|.. +..+.||||+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~--~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLE--LGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHH--hCCCcCcccccccccHHHHHHH
Confidence            3578888888888887777754 3334444 7788888888888888888888888  67777753 4467788888888


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL  286 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  286 (715)
                      +|+.++.++|++.|+... ..|.-|+|+-.+|+.-||.++|..+
T Consensus        89 SGn~dvcrllldaGa~~~-~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMY-LVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cCCchHHHHHHhccCccc-cccchhhhHHHHHHHhcchHHHHHH
Confidence            888888888888887764 6677788888888888888777665

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=3.4e-12  Score=146.82  Aligned_cols=106  Identities=22%  Similarity=0.257  Sum_probs=97.1

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChh
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  314 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  314 (715)
                      ++|+.|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            46999999999999999999999986 78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-------CcccceecCCCCCCHHHHHH
Q 005095          315 VALDLIQH-------HPQLAMARDGNGETALHVLA  342 (715)
Q Consensus       315 iv~~Ll~~-------~~~~~~~~d~~g~tpLh~A~  342 (715)
                      ++++|+++       +++. +..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            99999998       6664 566777888876555

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.2e-12  Score=96.27  Aligned_cols=54  Identities=30%  Similarity=0.513  Sum_probs=36.0

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 005095          233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  287 (715)
Q Consensus       233 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  287 (715)
                      |+||||+|++.|+.+++++|+++|.+++ .+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5677777777777777777777777765 55777777777777777777777765

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.2e-11  Score=118.99  Aligned_cols=124  Identities=19%  Similarity=0.170  Sum_probs=115.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~  276 (715)
                      .-..||.-+...|..+-...||+  .-.++|.+|..|.|||..|+..|+.++|++|++.|+|+|..++..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs--~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLS--TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHH--HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            34579999999999999999999  5566999999999999999999999999999999999998899999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      .|+.++.++|++.|+.....+.-|+|+-..|+.-|+.++|..+-++
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999999999999999999999999998877554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.9e-12  Score=98.07  Aligned_cols=50  Identities=28%  Similarity=0.494  Sum_probs=14.9

Q ss_pred             cccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       224 ~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      .+++.+|..|+||||+||..|+.+++++|++.|++++ .+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~-~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN-AKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC-CCcCCCCCHHHhC
Confidence            4444444444444444444444444444444444443 3444444444443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=8.1e-12  Score=129.12  Aligned_cols=118  Identities=21%  Similarity=0.098  Sum_probs=98.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Q 005095          202 LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE  281 (715)
Q Consensus       202 Lh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~  281 (715)
                      |.-|+..|.+++|+..+.  .-.|+...|++|-||||-|+-.||.+||++|++.|+++| ..|.+||||||+|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~--ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIY--EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHH--hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchH
Confidence            456888999999999988  567888889999999999999999999999999999997 79999999999999999999


Q ss_pred             HHHHHHhcCCCCCcc-ccccccHHHHHH--HcCChhHHHHHHhh
Q 005095          282 MIWYLYSVTKEEDLK-EEDRIELLVAVI--DAGLYDVALDLIQH  322 (715)
Q Consensus       282 iv~~Ll~~ga~~~~~-~~~g~t~L~~A~--~~g~~~iv~~Ll~~  322 (715)
                      +++.|++.|+-+-+. -.++.|+..-|=  +.|+.++.++|...
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999876554 356677765442  45677777777643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.76  E-value=2.3e-08  Score=104.54  Aligned_cols=120  Identities=23%  Similarity=0.222  Sum_probs=98.6

Q ss_pred             HHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcH
Q 005095          167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVT  246 (715)
Q Consensus       167 Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~  246 (715)
                      +..|+..+++--++.....++..+ . ++.+..|.||+|+..|+-|+|+|+|++....-+++.|+.|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll-~-~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLL-I-QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceE-e-eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            567777777666666665555443 3 37888999999999999999999999543455788899999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 005095          247 KIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV  289 (715)
Q Consensus       247 ~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  289 (715)
                      .+.++|++.|+.+- ..|..|.||-..|-+.|..+..-||-.+
T Consensus       948 ~vc~~lvdagasl~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhhe-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999985 7899999999999999999999888653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=9.3e-09  Score=112.08  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=82.3

Q ss_pred             HHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 005095          214 VQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE  293 (715)
Q Consensus       214 v~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~  293 (715)
                      ++-.++.-.+--.|.+|..|+|+||+|+..|..+++++|+++|.++.-.....|+||||.|+..|++|++-.|+.+|+..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            44444421333478899999999999999999999999999999997444457999999999999999999999999999


Q ss_pred             CccccccccHHHHHHHcC
Q 005095          294 DLKEEDRIELLVAVIDAG  311 (715)
Q Consensus       294 ~~~~~~g~t~L~~A~~~g  311 (715)
                      .++|++|.+||...++-.
T Consensus       113 ~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             EEecccCCCHHHHHhhcc
Confidence            999999999998877643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=1.4e-08  Score=110.66  Aligned_cols=96  Identities=26%  Similarity=0.341  Sum_probs=74.8

Q ss_pred             HHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCChHHHHHHHcCcHHHHHHHHhcC
Q 005095          178 FARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNTALCFAAVSGVTKIAEVMVNKN  256 (715)
Q Consensus       178 ~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~g  256 (715)
                      -++-++++.........|..|+|+||+|+..|..+++++||+  +|+|++.+|+ .|.||||-|+..|+.|++-+||++|
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq--hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ--HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG  109 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh--cCceeeeccccccchHhhHhhhhchHHHHHHHHhcC
Confidence            345555554443333347888888888888888888888888  7888888887 6888888888888888888888888


Q ss_pred             CCCCccCCCCCCCHHHHHHH
Q 005095          257 RELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       257 ~~~~~~~d~~g~tpLh~A~~  276 (715)
                      ..+- .+|++|.+||..-++
T Consensus       110 ~SL~-i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  110 RSLR-IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             CceE-EecccCCCHHHHHhh
Confidence            8874 788888888887776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.67  E-value=7.6e-08  Score=99.51  Aligned_cols=84  Identities=24%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccC-CCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 005095          202 LHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       202 Lh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      ||-.++.|+.+..-.||.  -|+++|..+. .|.||||.|++.|+..-+++|+-.|+|+. ..|.+|+||+.+|-..||-
T Consensus       137 LhasvRt~nlet~LRll~--lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLS--LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHhhcccHHHHHHHHH--cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCCCCcHHHHHHhcCch
Confidence            666666666666666666  4666665543 46666666666666666666666666654 5666666666666666666


Q ss_pred             HHHHHHHh
Q 005095          281 EMIWYLYS  288 (715)
Q Consensus       281 ~iv~~Ll~  288 (715)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            66666655

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.65  E-value=2.5e-08  Score=102.59  Aligned_cols=94  Identities=22%  Similarity=0.220  Sum_probs=78.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  275 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~  275 (715)
                      .++..++++|+..|.+..++.+.-  .|.|++.+|.+.+|+||.||..|+++++|+|++.....+..+|.+|+|||.-|-
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l--~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFAL--QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHH--hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            345568889999999888888776  688999999999999999999999999999998766555678889999999999


Q ss_pred             HcCCHHHHHHHHhcCC
Q 005095          276 LLGHKEMIWYLYSVTK  291 (715)
Q Consensus       276 ~~g~~~iv~~Ll~~ga  291 (715)
                      ..+|.+++++|-+...
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999988876543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.61  E-value=4.8e-08  Score=62.99  Aligned_cols=28  Identities=36%  Similarity=0.531  Sum_probs=15.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCC
Q 005095          267 GATPLCMAALLGHKEMIWYLYSVTKEED  294 (715)
Q Consensus       267 g~tpLh~A~~~g~~~iv~~Ll~~ga~~~  294 (715)
                      |+||||+||+.|+.|+|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.60  E-value=3.5e-07  Score=101.72  Aligned_cols=122  Identities=20%  Similarity=0.190  Sum_probs=85.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCcc---chhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHH
Q 005095          165 APLHLAALKGDWDFARNFFNLNPE---AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA  241 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~---~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa  241 (715)
                      --...|+.+|+...|+..++....   .++. .|.-|+++||+|..+.+.|++++|++  ++...       ..+|-+|+
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc-~d~lGr~al~iai~nenle~~eLLl~--~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINC-RDPLGRLALHIAIDNENLELQELLLD--TSSEE-------GDALLLAI   96 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhc-cChHhhhceecccccccHHHHHHHhc--Ccccc-------chHHHHHH
Confidence            356788888888888888876544   2333 47778888888888888888888888  44333       34788888


Q ss_pred             HcCcHHHHHHHHhcCCCC---------CccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc
Q 005095          242 VSGVTKIAEVMVNKNREL---------PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK  296 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~  296 (715)
                      +.|..++|+.++.+-...         +...-.-+.|||.+||..++.|++++|+++|+.+...
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            888888888888764322         1122234567777777777777777777777765443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.59  E-value=3.9e-08  Score=101.22  Aligned_cols=94  Identities=21%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHH
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF  239 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~  239 (715)
                      +.++..++.+||+.|++..++.+.-.+. ++..+ |.+.+|+||.||..|+.+++++|++. .+.+++.+|..|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~-D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~-~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGM-DLETK-DYDDRTALHVAAAEGHVEVVKFLLNA-CKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcc-ccccc-ccccchhheeecccCceeHHHHHHHH-HcCCCChhhccCCCcchH
Confidence            4456679999999999999999886544 45554 99999999999999999999999997 789999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcC
Q 005095          240 AAVSGVTKIAEVMVNKN  256 (715)
Q Consensus       240 Aa~~g~~~iv~~Ll~~g  256 (715)
                      |...+|.+++++|-+.-
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999998753

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.59  E-value=1.1e-07  Score=99.41  Aligned_cols=119  Identities=18%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCH
Q 005095          202 LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE-LPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       202 Lh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~-~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      +.-|+..+.+--++.+-.  .|.++-.++.+-.|.||+|+..|+-|||++++++|+. +....|..|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~--~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHL--NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHh--cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            455666665544444444  6888888999999999999999999999999999973 4446788999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          281 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       281 ~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      .+.++|++.|+..-..|..|.||-..|-+.|..|.+-+|-..
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=8.8e-08  Score=61.77  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=13.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLA  227 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~  227 (715)
                      |+||||+||+.|+.|+|++||+  +|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~--~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLE--HGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHH--cCCCCC
Confidence            4455555555555555555554  444443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=2.2e-07  Score=97.69  Aligned_cols=89  Identities=22%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCc
Q 005095          166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  245 (715)
Q Consensus       166 ~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~  245 (715)
                      |||+++...+.+-....+.........+.|..|+||||+|+..||.+.++.|+.  .|+++..+|++|++|||.|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~--a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS--AGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh--cCCCccccccccccHHHHHHHcCC
Confidence            588888888777766655444444444557888888888888888888888888  788888888888888888888888


Q ss_pred             HHHHHHHHhcC
Q 005095          246 TKIAEVMVNKN  256 (715)
Q Consensus       246 ~~iv~~Ll~~g  256 (715)
                      .+++..++.+-
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            88888777653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=3.1e-07  Score=95.07  Aligned_cols=87  Identities=24%  Similarity=0.317  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCc
Q 005095          166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  245 (715)
Q Consensus       166 ~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~  245 (715)
                      -||..++.|+.+..-.||..+++..... -..|.||||.|++.|+..-+++|+-  .|+|+.+.|.+|.||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~h-pekg~TpLHvAAk~Gq~~Q~ElL~v--YGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFH-PEKGNTPLHVAAKAGQILQAELLAV--YGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCC-cccCCchhHHHHhccchhhhhHHhh--ccCCCCCCCCCCCcHHHHHHhcCc
Confidence            6999999999999999998877655443 5779999999999999999999998  899999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 005095          246 TKIAEVMVNK  255 (715)
Q Consensus       246 ~~iv~~Ll~~  255 (715)
                      -++.+.|++.
T Consensus       213 ~~laeRl~e~  222 (669)
T KOG0818|consen  213 HELAERLVEI  222 (669)
T ss_pred             hHHHHHHHHH
Confidence            9999888864

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.47  E-value=1.8e-07  Score=62.21  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCccc
Q 005095          267 GATPLCMAALLGHKEMIWYLYSVTKEEDLKE  297 (715)
Q Consensus       267 g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~  297 (715)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5555555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.46  E-value=2e-07  Score=61.91  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=18.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRN  230 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d  230 (715)
                      |+||||+|+..|+.+++++|++  +|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~--~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLK--HGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHH--TTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHH--CcCCCCCCC
Confidence            5566666666666666666666  555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.45  E-value=3.8e-07  Score=95.95  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  279 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~  279 (715)
                      -|||+++.....+-...++..-....++.+|..|+||||+|+.-|+.+.++.|+.+|+++. .+|+.|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-ccccccccHHHHHHHcCC
Confidence            4599999888776665544421556789999999999999999999999999999999985 899999999999999999


Q ss_pred             HHHHHHHHhc
Q 005095          280 KEMIWYLYSV  289 (715)
Q Consensus       280 ~~iv~~Ll~~  289 (715)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9988887764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.33  E-value=1.8e-06  Score=96.26  Aligned_cols=127  Identities=13%  Similarity=0.185  Sum_probs=105.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCC--cccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTP--EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g--~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      .+.--...|++.|+.-.|+..++....  -++|.+|.-|+++|+.|+.+.+.|++++|++++.+.        ..+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            344467789999999999999996444  578899999999999999999999999999987654        2489999


Q ss_pred             HHcCCHHHHHHHHhcCCCC----------CccccccccHHHHHHHcCChhHHHHHHhhCcccceecC
Q 005095          275 ALLGHKEMIWYLYSVTKEE----------DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD  331 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~----------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d  331 (715)
                      +..|..+.|+.++.+....          ......+.||+.+|+..+++||++.|+++|+.++...|
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence            9999999999999875432          12234578999999999999999999999998754333

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.24  E-value=2.5e-06  Score=90.15  Aligned_cols=92  Identities=24%  Similarity=0.195  Sum_probs=75.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccc--ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 005095          201 ALHIAAGARRTLFVQELVNLMTPEDLAL--RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG  278 (715)
Q Consensus       201 pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~--~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g  278 (715)
                      -|.-|+...++..+-+||.+.....+|.  .+.+|+||||+||+.|++.+.++|+-+|+|+. .+|..|.|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhcc
Confidence            4777888888888888888333333443  45578899999999999999999999999985 78999999999999999


Q ss_pred             CHHHHHHHHhcCCCC
Q 005095          279 HKEMIWYLYSVTKEE  293 (715)
Q Consensus       279 ~~~iv~~Ll~~ga~~  293 (715)
                      .-|++..|+++|+..
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999998764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.19  E-value=3.9e-06  Score=88.78  Aligned_cols=91  Identities=16%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCC---CccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcC
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNREL---PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  311 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  311 (715)
                      .-|.-|+....+..+-+||.+|...   ....+.+|.|+||+||+.|+..+.++|+=+|+|+..+|..|+|+|.+|-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            3566778888888999999998632   2345677899999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhhCcc
Q 005095          312 LYDVALDLIQHHPQ  325 (715)
Q Consensus       312 ~~~iv~~Ll~~~~~  325 (715)
                      ..+++..|+++|..
T Consensus       706 sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYGCP  719 (749)
T ss_pred             cHHHHHHHHHcCCC
Confidence            99999999999864

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.07  E-value=3.6e-06  Score=95.87  Aligned_cols=126  Identities=15%  Similarity=0.150  Sum_probs=80.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCCCHHH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLC  272 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~d~~g~tpLh  272 (715)
                      ....|+|-||+++..++.-.++.+++- .+......|.+|.-.+|+ |..++.+.+-+|+.. |..+ +.+|..|+||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai-~i~D~~G~tpL~  646 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAI-DIRDRNGWTPLH  646 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccc-ccccCCCCcccc
Confidence            355677777777777777777777773 244445555666666666 444555555555443 3344 367777777777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCc------cccccccHHHHHHHcCChhHHHHHHhh
Q 005095          273 MAALLGHKEMIWYLYSVTKEEDL------KEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       273 ~A~~~g~~~iv~~Ll~~ga~~~~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      +|+.+|+..++..|++.|++...      ....|.|+-..|-.+|+..+.-+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            77777777777777776665432      334577777777777777776666554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.02  E-value=5.9e-06  Score=94.99  Aligned_cols=89  Identities=22%  Similarity=0.268  Sum_probs=74.1

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHc
Q 005095          231 KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA  310 (715)
Q Consensus       231 ~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~  310 (715)
                      ..|.|+||.|+..|..-++++|++.|++++ ..|..|.||||.+...|+...+..|+++|++.++.+.+|.+||+.|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            367888888888888888888888888875 7888888888888888888888888888888888888888888888777


Q ss_pred             CChhHHHHHH
Q 005095          311 GLYDVALDLI  320 (715)
Q Consensus       311 g~~~iv~~Ll  320 (715)
                      .+.+++.++.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            6666655544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.95  E-value=1.2e-05  Score=81.11  Aligned_cols=74  Identities=18%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  277 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~  277 (715)
                      --|..||+.|..+.|++|++  .|.++|++|.....||.+|+..||.++||+|+++|+--. ....+|.-. |+++.+
T Consensus        38 ~elceacR~GD~d~v~~LVe--tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVE--TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHH--hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcchh-hhhhhh
Confidence            35888999999999999999  789999999988999999999999999999999988642 233345444 344443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=1.1e-05  Score=92.03  Aligned_cols=121  Identities=12%  Similarity=-0.040  Sum_probs=66.9

Q ss_pred             cccccCCCChHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCCccccccccH
Q 005095          226 LALRNKVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCMAALLGHKEMIWYLY-SVTKEEDLKEEDRIEL  303 (715)
Q Consensus       226 i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll-~~ga~~~~~~~~g~t~  303 (715)
                      .....-.|.|-||+++..++.-.++.+++- |... ...|.+|.-.+|+ |..++.+.+-+|+ -.|..++.+|..|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            334444566666666666666666666664 3322 2455555556666 3344444444443 3455666666666666


Q ss_pred             HHHHHHcCChhHHHHHHhhCcccc-----eecCCCCCCHHHHHHhCCCCc
Q 005095          304 LVAVIDAGLYDVALDLIQHHPQLA-----MARDGNGETALHVLARKPSAF  348 (715)
Q Consensus       304 L~~A~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~~~~~  348 (715)
                      ||+|+..|+..++..|++.+++..     ......|.|+-..|..+|+..
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g  694 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG  694 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc
Confidence            666666666666666665554321     122234666666666666543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.89  E-value=1e-05  Score=93.08  Aligned_cols=89  Identities=24%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  275 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~  275 (715)
                      ..|.|+||.|+..|..-++++|++  .|+++|..|..|+||||.+...|+...+..|+++|++.+ ..+.+|.+||++|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~--~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~-a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ--NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN-AFDPDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh--cCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc-ccCccCcchhhHHh
Confidence            457999999999999999999999  899999999999999999999999999999999999986 89999999999998


Q ss_pred             HcCCHHHHHHHH
Q 005095          276 LLGHKEMIWYLY  287 (715)
Q Consensus       276 ~~g~~~iv~~Ll  287 (715)
                      ...+.+++-++.
T Consensus       731 ~~~~~d~~~l~~  742 (785)
T KOG0521|consen  731 EAANADIVLLLR  742 (785)
T ss_pred             hhccccHHHHHh
Confidence            887766665543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.86  E-value=3.1e-05  Score=71.16  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=48.6

Q ss_pred             CcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 005095          223 PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK  291 (715)
Q Consensus       223 g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga  291 (715)
                      +.++|.+|..|+|||+.|+..|+.+.+.+|+.+|+......|..|.+++.+|-+.|+.++|+.|.+.-.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            346777777777777777777777777777777733334677777777777777777777777776533

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.79  E-value=4.7e-05  Score=76.87  Aligned_cols=84  Identities=18%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      --|..||+.|+.+.|++|++. +.++|.. |....+||.+|+..||.++|++|++  +|+--..-.-+|...+ +++.+ 
T Consensus        38 ~elceacR~GD~d~v~~LVet-gvnVN~v-D~fD~spL~lAsLcGHe~vvklLLe--nGAiC~rdtf~G~RC~-YgaLn-  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET-GVNVNAV-DRFDSSPLYLASLCGHEDVVKLLLE--NGAICSRDTFDGDRCH-YGALN-  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh-CCCcchh-hcccccHHHHHHHcCcHHHHHHHHH--cCCcccccccCcchhh-hhhhh-
Confidence            358888888888888888874 4455554 7788888888888888888888888  6765544444666653 44443 


Q ss_pred             cHHHHHHHHhc
Q 005095          245 VTKIAEVMVNK  255 (715)
Q Consensus       245 ~~~iv~~Ll~~  255 (715)
                       ..|=+.|++.
T Consensus       112 -d~IR~mllsy  121 (516)
T KOG0511|consen  112 -DRIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHHH
Confidence             2344455543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.67  E-value=8.6e-05  Score=68.27  Aligned_cols=68  Identities=19%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             chhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-cccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCC
Q 005095          189 AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP-EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL  259 (715)
Q Consensus       189 ~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g-~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~  259 (715)
                      +++.+ |..|+|||++|+..|+.+.|.+|+.  +| +.+...|..|.+++.+|-+.|+.++++.|-+...+-
T Consensus         4 ~in~r-D~fgWTalmcaa~eg~~eavsyllg--rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    4 NINAR-DAFGWTALMCAAMEGSNEAVSYLLG--RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             Cccch-hhhcchHHHHHhhhcchhHHHHHhc--cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            34554 8999999999999999999999999  78 889999999999999999999999999998875543

>smart00248 ANK ankyrin repeats

Probab=96.30  E-value=0.0066  Score=37.63  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=11.9

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCC
Q 005095          233 GNTALCFAAVSGVTKIAEVMVNKNR  257 (715)
Q Consensus       233 G~TpLh~Aa~~g~~~iv~~Ll~~g~  257 (715)
                      |.||+|+|+..++.++++.|++++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3444444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.23  E-value=0.0069  Score=37.53  Aligned_cols=27  Identities=33%  Similarity=0.401  Sum_probs=14.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 005095          267 GATPLCMAALLGHKEMIWYLYSVTKEE  293 (715)
Q Consensus       267 g~tpLh~A~~~g~~~iv~~Ll~~ga~~  293 (715)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.41  E-value=0.019  Score=60.86  Aligned_cols=64  Identities=16%  Similarity=0.119  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHhCCCCc-----cccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhh
Q 005095          418 NVEFLMVLIQMYPNLI-----WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAG  485 (715)
Q Consensus       418 ~~eiv~~Ll~~~~d~~-----~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~  485 (715)
                      -.+.+++|.+++.+..     ...+..--|+||+|+..|..++|.+||+.|+|+..    +|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~----kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST----KDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh----cccCCCCcccccc
Confidence            3667888888876632     12234456999999999999999999999999984    9999999999987

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.31  E-value=0.023  Score=60.16  Aligned_cols=67  Identities=15%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcC-cccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q 005095          382 ELVKRLWEQVLLLD-DSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV  449 (715)
Q Consensus       382 ~~~~~l~~~~l~~~-~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~  449 (715)
                      ..+.+|.++.+..+ .......+..-.|+||+|+..|..++|.+||+.|.| ...+|..|+||..++..
T Consensus       405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCccccccc
Confidence            34455555544432 122223344567999999999999999999999988 78899999999999873

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.77  E-value=0.29  Score=45.66  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 005095          410 LFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  461 (715)
Q Consensus       410 Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  461 (715)
                      |..|+..|-...+...+++|.+. +      .++|-.|+.+++..|+.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHHHHhhc
Confidence            78899999999999999999883 2      289999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.63  E-value=0.35  Score=46.42  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=75.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcC----CCCCccCCCCCCCHHHHHHH
Q 005095          201 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN----RELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       201 pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g----~~~~~~~d~~g~tpLh~A~~  276 (715)
                      .|--|+..-+.+-+.-++.  ..       ++-.+++-+|+.++..+++.+|+.+-    .++...  ..+.--+.++..
T Consensus       156 sledAV~AsN~~~i~~~Vt--dK-------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVT--DK-------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhc--ch-------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHh
Confidence            4566777777777666665  11       12357888888888888888888652    122111  112223444433


Q ss_pred             --cCCHHHHHHHHhcC-CCCCcc---ccccccHHHHHHHcCChhHHHHHHhhCcc
Q 005095          277 --LGHKEMIWYLYSVT-KEEDLK---EEDRIELLVAVIDAGLYDVALDLIQHHPQ  325 (715)
Q Consensus       277 --~g~~~iv~~Ll~~g-a~~~~~---~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  325 (715)
                        ..+..++++.+++| +++|.+   -+.|.|.|.-|+..++-+++..|+++|+.
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence              34567888888888 667654   45688999999999999999999998874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.07  E-value=0.8  Score=42.80  Aligned_cols=138  Identities=10%  Similarity=-0.005  Sum_probs=87.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      -.|..|+.++.+.++++.=+.-...     -...++-.-.||+..+.|+|++.=+     ++..  .+-.+-+-.|...+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~q-----nL~i--~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQ-----NLHI--YNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhh-----ccCC--CCchhhhhhhhhcc
Confidence            4678888999999888765432111     1345678889999999999999854     1111  22345667777777


Q ss_pred             cHHHH----HHHHhcCCCCCccCCC--CCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHH
Q 005095          245 VTKIA----EVMVNKNRELPSIRGN--KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  318 (715)
Q Consensus       245 ~~~iv----~~Ll~~g~~~~~~~d~--~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~  318 (715)
                      +.+..    +++.++...-. ..|.  --..-|..|+..|-..-+...+++|.+++.      ++|..|+..++-.++.+
T Consensus       116 DlsLyslGY~l~~~~~~~~~-~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEH-NEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDY  188 (192)
T ss_pred             chhHHHHHHHHHHhhccccc-ccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHH
Confidence            76652    22233211100 0000  001236678888888888888888877643      78888888888888877


Q ss_pred             HHh
Q 005095          319 LIQ  321 (715)
Q Consensus       319 Ll~  321 (715)
                      ++.
T Consensus       189 fi~  191 (192)
T PF03158_consen  189 FIR  191 (192)
T ss_pred             hhc
Confidence            764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.11  E-value=1.8  Score=41.67  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=78.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC----CCChHHHHHH
Q 005095          166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK----VGNTALCFAA  241 (715)
Q Consensus       166 ~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~----~G~TpLh~Aa  241 (715)
                      .|--|+..-+.+.+..++....         .-.++|-+|..++..+++.+|+..   -....+|-    .+.--+.++.
T Consensus       156 sledAV~AsN~~~i~~~VtdKk---------dA~~Am~~si~~~K~dva~~lls~---f~ft~~dv~~~~~~~ydieY~L  223 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK---------DAHQAMWLSIGNAKEDVALYLLSK---FNFTKQDVASMEKELYDIEYLL  223 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH---------HHHHHHHHHhcccHHHHHHHHHhh---cceecchhhhcCcchhhHHHHH
Confidence            5777887777777776653322         234678888888888888888872   22222221    1222344444


Q ss_pred             Hc--CcHHHHHHHHhcCCC-CC--ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 005095          242 VS--GVTKIAEVMVNKNRE-LP--SIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  292 (715)
Q Consensus       242 ~~--g~~~iv~~Ll~~g~~-~~--~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~  292 (715)
                      ..  .+..|+++.+++|-- ++  ..+-+.|.|-|.-|...++.|++.+|+++||-
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            33  367788999998842 22  23566799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.82  E-value=1.5  Score=35.10  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 005095          408 RLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL  462 (715)
Q Consensus       408 t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  462 (715)
                      .-+..|+..|+.|+++.+++.+..     +   ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            348999999999999999976522     1   4679999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.30  E-value=1.5  Score=35.06  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=8.9

Q ss_pred             HHHHHHHcCcHHHHHHHHh
Q 005095          236 ALCFAAVSGVTKIAEVMVN  254 (715)
Q Consensus       236 pLh~Aa~~g~~~iv~~Ll~  254 (715)
                      .+..|+...+.+++++|++
T Consensus        35 ~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHH
Confidence            3444444444444444444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	715
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 166 PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 223
           PLH+A+  G     +N      +P    V++    +T LH+AA A  T   + L  L   
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKV----ETPLHMAARAGHTEVAKYL--LQNK 70
Query: 224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
             +  + K   T L  AA  G T + ++++  N   P++    G TPL +AA  GH E +
Sbjct: 71  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 129
Query: 284 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH--HPQLAMARDGNGETALHV 340
             L      +    +     L      G   VA  L++   HP    A   NG T LHV
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHV 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	715
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-11
2rfa_A	232	Transient receptor potential cation channel subfa	7e-09
2rfa_A	232	Transient receptor potential cation channel subfa	3e-08
2rfa_A	232	Transient receptor potential cation channel subfa	8e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-10
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	4e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELVNLMTP 223
            LHLA +  +              +     +N    T LH+A    +    + L+     
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC- 69

Query: 224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSI---RGNKGATPLCMAALLG 278
            D  LR+  GNT L  A   G      V+        L SI       G T L +A++ G
Sbjct: 70  -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 279 HKEMIWYLYSVTKEEDLKEEDRIE----LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 334
           +  ++  L  V+   D+  ++       L +AV D    D+   L++    +       G
Sbjct: 129 YLGIVELL--VSLGADVNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVN-RVTYQG 184

Query: 335 ETALHVLARK 344
            +   +   +
Sbjct: 185 YSPYQLTWGR 194

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 194 ISRNQDTALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEV 251
           ++ + D+ LH+A          E++  +  +   L  +N +  T L  A ++   +IAE 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 252 MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS----VTKEEDLKEEDRIE---LL 304
           ++    + P +R  +G TPL +A   G    +  L            LK  +      L 
Sbjct: 64  LLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 305 VAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
           +A I  G   +   L+     +      NG TALH+
Sbjct: 123 LASIH-GYLGIVELLVSLGADVNAQEPCNGRTALHL 157

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 26/148 (17%)

Query: 166 PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL---- 217
           PLHLA  +G              P    +  + N +  T LH+A+       V+ L    
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 218 --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 271
             VN             G TAL  A       +  +++    + N         +G +P 
Sbjct: 141 ADVNAQE-------PCNGRTALHLAVDLQNPDLVSLLLKCGADVN-----RVTYQGYSPY 188

Query: 272 CMAALLGHKEMIWYLYSVTKEEDLKEED 299
            +        +   L  +T E      +
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPE 216

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPS------IRGNKGATPLCMAALLGHKEMI 283
            + G++ L  A +     +   ++   R++         + N   TPL +A +    E+ 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVI---RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 284 WYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQH-----HPQLAMARDGNGE 335
             L  +    D +  D      L +A    G       L Q         +  A + NG 
Sbjct: 62  EAL--LGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 336 TALHVLARK 344
           T LH+ +  
Sbjct: 119 TCLHLASIH 127

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 7e-14
 Identities = 52/190 (27%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
           PLH+A+  G     +N      +P       +   +T LH+AA A  T   + L      
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKAK 72

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 277
           VN         + K   T L  AA  G T + ++++  N   P++    G TPL +AA  
Sbjct: 73  VNA--------KAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAARE 123

Query: 278 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 334
           GH E +  L    KE       +     L VA    G   VA  L++       A   NG
Sbjct: 124 GHVETVLALLE--KEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHP-NAAGKNG 179

Query: 335 ETALHVLARK 344
            T LHV    
Sbjct: 180 LTPLHVAVHH 189

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.4 bits (171), Expect = 1e-12
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 16/184 (8%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 223
           PLH+AA +   + AR+      +  A     S    T LH+AA       V  L++    
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAE----SVQGVTPLHLAAQEGHAEMVALLLS--KQ 268

Query: 224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
            +  L NK G T L   A  G   +A+V++             G TPL +A+  G+ +++
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLV 327

Query: 284 WYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
            +L  +  + D+  + ++    L  A    G  D+   L+++          +G T L +
Sbjct: 328 KFL--LQHQADVNAKTKLGYSPLHQAA-QQGHTDIVTLLLKNGASPN-EVSSDGTTPLAI 383

Query: 341 LARK 344
             R 
Sbjct: 384 AKRL 387

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.7 bits (169), Expect = 2e-12
 Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 36/194 (18%)

Query: 166 PLHLAALKGDWDFARNFFNL------NPEAVCVRISRNQDTALHIAAGARRTLFVQEL-- 217
           PLH+AA  G    A     L      +P A      +N  T LH+A        V+ L  
Sbjct: 149 PLHVAAKYGKVRVAE----LLLERDAHPNAA----GKNGLTPLHVAVHHNNLDIVKLLLP 200

Query: 218 ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 273
                +             G T L  AA     ++A  ++       +    +G TPL +
Sbjct: 201 RGGSPHS--------PAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHL 251

Query: 274 AALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMAR 330
           AA  GH EM+  L  ++K+ +    ++     L +   + G   VA  LI+H   +  A 
Sbjct: 252 AAQEGHAEMVALL--LSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVD-AT 307

Query: 331 DGNGETALHVLARK 344
              G T LHV +  
Sbjct: 308 TRMGYTPLHVASHY 321

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 5e-10
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 29/188 (15%)

Query: 166 PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
           PLHLAA +G  +      +   N        +++  T LH+ A          L      
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHGVM 303

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 277
           V+           ++G T L  A+  G  K+ + ++    +  + +   G +PL  AA  
Sbjct: 304 VDA--------TTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQ 354

Query: 278 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVA--LDLIQHHPQLAMARDG 332
           GH +++  L  +       E        L +A    G   V   L ++       +  D 
Sbjct: 355 GHTDIVTLL--LKNGASPNEVSSDGTTPLAIAK-RLGYISVTDVLKVVTDETSFVLVSDK 411

Query: 333 NGETALHV 340
           +  +    
Sbjct: 412 HRMSFPET 419

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.6 bits (174), Expect = 3e-13
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 48/194 (24%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PLHLAA                  V + +                LH A         + 
Sbjct: 61  PLHLAAGYN-----------RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
           L      VN          +    T L  AA     ++  ++++   + P++    G + 
Sbjct: 110 LLKHGACVNA--------MDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSA 160

Query: 271 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 330
           + MA     +E + Y +               LL A  +A L  V   L          +
Sbjct: 161 VDMAPTPELRERLTYEFKGHS-----------LLQAAREADLAKVKKTLALEII--NFKQ 207

Query: 331 DGNGETALHVLARK 344
             + ETALH     
Sbjct: 208 PQSHETALHCAVAS 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 1e-09
 Identities = 36/210 (17%), Positives = 59/210 (28%), Gaps = 52/210 (24%)

Query: 166 PLHLAALKGDWDFARNFFNL------NPEAVCVRISRNQDTALHIAAGARRTLFVQELVN 219
           PLH AA K   +       L      +P  V    + +  +A+ +A        +     
Sbjct: 127 PLHEAASKNRVEVCS----LLLSHGADPTLV----NCHGKSAVDMAPTPELRERLTYEFK 178

Query: 220 LMTPEDLALRNKV-------------------GNTALCFAAVSGVTKIAEVM-------V 253
             +    A    +                     TAL  A  S   K  +V         
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238

Query: 254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDA 310
           N N      +     TPL +AA   H +++  L        +   D +    L  A +  
Sbjct: 239 NVN-----EKNKDFMTPLHVAAERAHNDVMEVL--HKHGAKMNALDSLGQTALHRAALA- 290

Query: 311 GLYDVALDLIQHHPQLAMARDGNGETALHV 340
           G       L+ +    +      G TA  +
Sbjct: 291 GHLQTCRLLLSYGSDPS-IISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA--GARRTLFVQEL----- 217
           + L  AA + D    +    L  E +  +  ++ +TALH A      +   V EL     
Sbjct: 181 SLLQ-AAREADLAKVKKT--LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237

Query: 218 --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 275
             VN         +NK   T L  AA      + EV+     +  +   + G T L  AA
Sbjct: 238 ANVNE--------KNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAA 288

Query: 276 LLGHKEMIWYLYS 288
           L GH +    L S
Sbjct: 289 LAGHLQTCRLLLS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 3e-05
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 222 TPEDLA-------LRNKVGNTALCFAAVSG-VTKIAEVMVNKNRELPSIRGNKGATPLCM 273
           +  DLA       L  +     L  AA SG   K+  ++   N         + +TPL +
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHL 64

Query: 274 AALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMAR 330
           AA      ++  L  +    D+  +D+     L  A    G Y+V   L++H   +  A 
Sbjct: 65  AAGYNRVRIVQLL--LQHGADVHAKDKGGLVPLHNACS-YGHYEVTELLLKHGACVN-AM 120

Query: 331 DGNGETALHVLARK 344
           D    T LH  A K
Sbjct: 121 DLWQFTPLHEAASK 134

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 6e-04
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 37/134 (27%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS-------RNQD--TALHIAAGARRTLFVQE 216
            LH A                 +   + +        +N+D  T LH+AA       ++ 
Sbjct: 214 ALHCAVASLHPK--------RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV 265

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
           L      +N          + +G TAL  AA++G  +   ++++   + PSI   +G T 
Sbjct: 266 LHKHGAKMNA--------LDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTA 316

Query: 271 LCMAA-----LLGH 279
             M       +L  
Sbjct: 317 AQMGNEAVQQILSE 330

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 24/188 (12%)

Query: 164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
                    KG          L P       + + D  LH AA      +++E       
Sbjct: 46  DTNWWKGTSKGRTG-------LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 277
           VN          +K G+TAL +A   G   I E++  +     + +   G T L  AA  
Sbjct: 99  VN--------GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 278 GHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGET 336
           G+ +++  L +     DL+  + ++   +A  +A    +               +     
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMAT-NAACASLLKKKQGTDAVRT-LSNAEDYL 208

Query: 337 ALHVLARK 344
                  +
Sbjct: 209 DDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 16/178 (8%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
            +  A    +            E   + I+   DT         RT  +           
Sbjct: 15  KVFRALYTFEPRTPDEL--YIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN-------Y 65

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
           +A + +  +  L  AA  G        ++      +     G+T L  A   GHK+++  
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 286 LYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
           L++     +L +++++    L  A    G  D+   L+    +    R+   + A  +
Sbjct: 125 LFT-QPNIELNQQNKLGDTALHAAAWK-GYADIVQLLLAKGART-DLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 14/153 (9%)

Query: 195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVN 254
            +     +  A          EL   +   D+     + +T        G T +      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDEL--YIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 255 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAG 311
             +            PL  AA  G+   +     +     +   D+     L  A    G
Sbjct: 67  AEQA------ESIDNPLHEAAKRGNLSWLREC--LDNRVGVNGLDKAGSTALYWACHG-G 117

Query: 312 LYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
             D+   L          ++  G+TALH  A K
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 22/123 (17%)

Query: 166 PLHLAALKGDWDFAR---NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL----- 217
            L+ A   G  D         N+         ++  DTALH AA       VQ L     
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELNQQ----NKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 218 -VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 276
             +L        RN     A   A  +    + +     +    ++   +       + L
Sbjct: 165 RTDL--------RNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDSDL 215

Query: 277 LGH 279
             H
Sbjct: 216 EHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 9/125 (7%)

Query: 220 LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH 279
           +  P    ++   G   +  A  +   +  + +  +  +      +   T        G 
Sbjct: 1   MSKPPPKPVKP--GQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGR 57

Query: 280 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 339
             +I   Y   + E         L  A    G      + + +   +    D  G TAL+
Sbjct: 58  TGLIPSNYVAEQAES----IDNPLHEAAKR-GNLSWLRECLDNRVGV-NGLDKAGSTALY 111

Query: 340 VLARK 344
                
Sbjct: 112 WACHG 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            LH A   G           + E V   +              + LHIAA A     V+ 
Sbjct: 43  ALHWACSAG-----------HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 276
           L+       +   N+ G T L +AA     +IA +++         + +  AT +  AA 
Sbjct: 92  LLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAA 148

Query: 277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGET 336
            G+ +M+  L       ++++ +    L    D    + A  L+     +    +   +T
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKT 207

Query: 337 ALHVLA 342
            L V  
Sbjct: 208 PLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 36/201 (17%)

Query: 159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGAR 209
            C ++    +LA                 E     ++          +  TALH A  A 
Sbjct: 3   GCVSNIMICNLAYSGK-----------LDELKERILADKSLATRTDQDSRTALHWACSAG 51

Query: 210 RTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR 263
            T  V+ L      VN         ++  G + L  AA +G  +I + ++ K   + +  
Sbjct: 52  HTEIVEFLLQLGVPVND--------KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAV 102

Query: 264 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 323
              G TPL  AA     E+   L       D K+      +      G   +   L+ + 
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 324 PQLAMARDGNGETALHVLARK 344
                 +D  G T LH+   +
Sbjct: 163 ASTN-IQDTEGNTPLHLACDE 182

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 36/259 (13%), Positives = 75/259 (28%), Gaps = 60/259 (23%)

Query: 233 GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
                  A    + ++ E ++                   T L  A   GH E++ +L  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLAT-----RTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 289 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 345
                 + ++D      L +A   AG  ++   L+     +  A + NG T LH  A K 
Sbjct: 62  --LGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKN 117

Query: 346 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 405
                                            +   +        LL   +        
Sbjct: 118 -------------------------------RHEIAVM--------LLEGGANPDAKDHY 138

Query: 406 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 465
            +  +  A   GN++ + +L+    +   + D    +  H+A    + +    +   GA 
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGAS 197

Query: 466 KDLIASYKDENNNNMLHLA 484
             +    +++     L +A
Sbjct: 198 IYI----ENKEEKTPLQVA 212

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 66.3 bits (163), Expect = 3e-12
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS---------RNQDTALHIAAGARRTLFVQE 216
           PLHLA +              P  V + ++         R+  TA H+A   R    ++ 
Sbjct: 49  PLHLAVITT-----------LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

Query: 217 LVNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 274
           L++       DL  RN  G TAL  A  +   +  ++++ +  ++ ++    G +PL  A
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157

Query: 275 ALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARD 331
                  M+  L       ++  +       L  A    GL  +   L++     +  ++
Sbjct: 158 VENNSLSMVQLLLQ--HGANVNAQMYSGSSALHSASGR-GLLPLVRTLVRSGADSS-LKN 213

Query: 332 GNGETALHVLARK 344
            + +T L V   +
Sbjct: 214 CHNDTPLMVARSR 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRI---SRNQDTALHIAAGARRTLFVQEL----- 217
           PLH+A ++G+        NL  +     +   +  + T LH+A        V+ L     
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70

Query: 218 -VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS---IRGNKGATPLCM 273
                        ++ G TA   A           +++           R   G T L +
Sbjct: 71  SPMA--------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 274 AALLGHKEMIWYLYSV---TKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 330
           A     +E +  L          D+K   R  L+ AV +     +   L+QH   +  A+
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSG-RSPLIHAVEN-NSLSMVQLLLQHGANVN-AQ 179

Query: 331 DGNGETALHVLARK 344
             +G +ALH  + +
Sbjct: 180 MYSGSSALHSASGR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.1 bits (152), Expect = 7e-11
 Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 17/159 (10%)

Query: 197 NQDTALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMV- 253
           + DT LHIA        V  LVNL      +L + N +  T L  A ++ +  +  ++V 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 254 ---NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV--TKEEDLKEEDRIE---LLV 305
              +            G T   +A        +  L         DL+  +      L V
Sbjct: 68  AGASPM-----ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 306 AVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           AV      +    L++    +      +G + L      
Sbjct: 123 AVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMV--------NKNRELPSIRGNKGATPLCMAALLGHKE 281
           ++ G+T L  A V G       +V          +     I  N   TPL +A +     
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----IYNNLRQTPLHLAVITTLPS 60

Query: 282 MIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAM---ARDGNGE 335
           ++  L  VT        DR       +A            L+       +   AR+ +G 
Sbjct: 61  VVRLL--VTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 336 TALHVLARK 344
           TALHV    
Sbjct: 118 TALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 44/143 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD----------TALHIAAGARRTLFVQ 215
            LH+A                 E V + + R  D          + L  A        VQ
Sbjct: 119 ALHVAVNTE-----------CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167

Query: 216 EL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGN 265
            L      VN         +   G++AL  A+  G+  +   +V    + +     ++  
Sbjct: 168 LLLQHGANVNA--------QMYSGSSALHSASGRGLLPLVRTLVRSGADSS-----LKNC 214

Query: 266 KGATPLCMAALLGHKEMIWYLYS 288
              TPL +A      +++    +
Sbjct: 215 HNDTPLMVARSRRVIDILRGKAT 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 44/208 (21%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
            LH     G             E + + +             +T L  A   R    +  
Sbjct: 141 ALHWCVGLG---------PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 217 LVNLMTPE---DLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGAT 269
           +++ +  +    L   NK GN+ L +A +     +A   V    + N     +  N+   
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-----MEDNEHTV 246

Query: 270 PLCMAALLGHKEMIWYLYSVTKEEDLKEE-------------DRIELLVAVIDAGLYDVA 316
           PL ++       +   L   T    ++                 ++ + A  D    +V 
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 317 LDLIQHHPQLAMARDGNGETALHVLARK 344
             L +   ++       G        +K
Sbjct: 307 QLLQEKLDEVV-RSLNTGAGGAVKRKKK 333

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 32/197 (16%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRI-SRNQD--TALHIAAGARRTLFVQEL----- 217
           PL  A    + +      +  P    +R+   N+   + LH A                 
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 218 -VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL------------PSIRG 264
            VN+         +      L  +  + +  + + ++ K                     
Sbjct: 236 DVNM--------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 265 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHH 323
                 +  AA    +E++  L     E            +          V    +   
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK-AAPAVKRMKLAPS 346

Query: 324 PQLAMARDGNGETALHV 340
             +   R  +   +  V
Sbjct: 347 APVR-TRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 33/192 (17%), Positives = 56/192 (29%), Gaps = 44/192 (22%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            +H+AA KG             + V   I              TALH+A         + 
Sbjct: 23  KIHVAARKG-----------QTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 276
           L +    E  +L +  G   +  A ++  T +   +V            +G  P  +   
Sbjct: 72  LAS--VGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNE 120

Query: 277 LGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDAGLY-DVALDLIQHHPQLAMARDG 332
              +E+         E     +    +  L   V     Y ++   L+Q       A+D 
Sbjct: 121 CDEREVN--------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDK 171

Query: 333 NGETALHVLARK 344
             ET L      
Sbjct: 172 ADETPLMRAMEF 183

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 30/151 (19%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
             +H+AA   +T  V+ L                ++N+ G TAL  A   G    A+ + 
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVSPT--------IQNRFGCTALHLACKFGCVDTAKYLA 73

Query: 254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY 313
           +            G  P+ +A +    +++  L         KE  ++   +        
Sbjct: 74  SVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGA-----KERGQMPESLLNE-CDER 124

Query: 314 DVALDLIQHHPQLAMARDGNGETALHVLARK 344
           +V              +   G+TALH     
Sbjct: 125 EVNEIGSH-------VKHCKGQTALHWCVGL 148

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 229 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
            +      +  AA  G T     ++      P+I+   G T L +A   G  +   YL  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYL-- 72

Query: 289 VTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
            +  E       +  + +AV+     D+ + L++            G+    +L   
Sbjct: 73  ASVGEVHSLWHGQKPIHLAVMA-NKTDLVVALVEGA-------KERGQMPESLLNEC 121

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 8e-12
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 166 PLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL---- 217
           PLH AA  G  D          N++        S +Q T L  AA       V+ L    
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANID------TCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 218 --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 275
             V+         ++  G+T L  AA  G  ++ + +++  +   + + + G TP+  A 
Sbjct: 68  ALVDP--------KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 276 LLGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDAGLYDVALDLIQHHPQLAMARDG 332
              H +++  L S  K  D+   D    I L  A    G  D+A  L+     L  A + 
Sbjct: 120 EYKHVDLVKLLLS--KGSDINIRDNEENICLHWAAFS-GCVDIAEILLAAKCDLH-AVNI 175

Query: 333 NGETALHVLARK 344
           +G++ LH+ AR+
Sbjct: 176 HGDSPLHIAARE 187

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 37/195 (18%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PL  AA              + EAV   I              T LH+AA       VQ 
Sbjct: 47  PLMEAAENN-----------HLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 272
           L++     D+  ++  G T + +A       + ++++    + N     IR N+    L 
Sbjct: 96  LLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-----IRDNEENICLH 149

Query: 273 MAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMA 329
            AA  G  ++   L +   + DL   +      L +A  +   YD  +  +     +   
Sbjct: 150 WAAFSGCVDIAEILLA--AKCDLHAVNIHGDSPLHIAARE-NRYDCVVLFLSRDSDVT-L 205

Query: 330 RDGNGETALHVLARK 344
           ++  GET L   +  
Sbjct: 206 KNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.8 bits (128), Expect = 8e-08
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 33/174 (18%)

Query: 184 NLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTAL 237
           ++N +       +N+ + LH AA A        L      ++          ++   T L
Sbjct: 1   HMNFKME----HQNKRSPLHAAAEAGHVDICHMLVQAGANID--------TCSEDQRTPL 48

Query: 238 CFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE 293
             AA +   +  + ++      +      +  +G+T L +AA  GH E++ YL S   + 
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSN-GQM 102

Query: 294 DLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           D+  +D      ++ A       D+   L+     +   RD      LH  A  
Sbjct: 103 DVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFS 154

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.6 bits (112), Expect = 8e-06
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 31/134 (23%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
           P+  A               + + V + +S+  D           LH AA +      + 
Sbjct: 114 PMIWATEYK-----------HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 272
           L+      DL   N  G++ L  AA         + +    +       ++  +G TPL 
Sbjct: 163 LLAAKC--DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-----LKNKEGETPLQ 215

Query: 273 MAALLGHKEMIWYL 286
            A+L         +
Sbjct: 216 CASLNSQVWSALQM 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 42/210 (20%)

Query: 152 VSGGVERNCFTSYAPLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQDTALHIAAG 207
           +S  +  +  + ++P+H AA+ G     RN       +N       I+ +  + LH A  
Sbjct: 48  LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN------IITADHVSPLHEACL 101

Query: 208 ARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNR 257
                 V+ L      VN              +T L  A VSG      +++    +   
Sbjct: 102 GGHLSCVKILLKHGAQVNG--------VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153

Query: 258 ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYD 314
           E      +  A+P+  AA  GH E +  L  +    ++  +       L +A  +     
Sbjct: 154 E------SDLASPIHEAARRGHVECVNSL--IAYGGNIDHKISHLGTPLYLACEN-QQRA 204

Query: 315 VALDLIQHHPQLAMARDGNGETALHVLARK 344
               L++    +   +    ++ LH + R 
Sbjct: 205 CVKKLLESGADVNQGKG--QDSPLHAVVRT 232

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 8e-07
 Identities = 23/200 (11%), Positives = 50/200 (25%), Gaps = 83/200 (41%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR--------NQDTALHIAAGARRTLFVQEL 217
           PL  A + G           + + V + +          +  + +H AA       V  L
Sbjct: 128 PLFNACVSG-----------SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176

Query: 218 ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK----NRELPSIRGNKG 267
                 ++         +     T L  A  +      + ++      N+      G   
Sbjct: 177 IAYGGNIDH--------KISHLGTPLYLACENQQRACVKKLLESGADVNQ------GKGQ 222

Query: 268 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV---AVIDAGLYDVALDLIQHHP 324
            +PL        +E+                    LL+   A                  
Sbjct: 223 DSPLHAVVRTASEEL------------------ACLLMDFGADTQ--------------- 249

Query: 325 QLAMARDGNGETALHVLARK 344
               A++  G+  + ++  +
Sbjct: 250 ----AKNAEGKRPVELVPPE 265

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 44/137 (32%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
           P+H AA +G           + E V   I+   +         T L++A   ++   V++
Sbjct: 160 PIHEAARRG-----------HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L      VN         + K  ++ L     +   ++A +++    +        +  +
Sbjct: 209 LLESGADVN---------QGKGQDSPLHAVVRTASEELACLLMDFGADTQ-----AKNAE 254

Query: 267 GATPLCMAALLGHKEMI 283
           G  P+ +         +
Sbjct: 255 GKRPVELVPPESPLAQL 271

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 45/193 (23%)

Query: 166 PLHLAALKGDWDFARNFFNL----NPEAVCVRISRNQDTALHIAAGARRTLFVQEL---- 217
           P   AA K D         L    + +AV      N  TAL   AG      V+ L    
Sbjct: 48  PWWTAARKADEQALSQ---LLEDRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 218 --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 271
             ++             G TAL  AA     ++ E +V    +       +   +G T L
Sbjct: 101 ADLDHRDMRG-------GLTALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTAL 148

Query: 272 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 331
            +A  +           +     +  E  I +L            +       ++   + 
Sbjct: 149 ELAREILKTTPKGNP--MQFGRRIGLEKVINVLEG---------QVFEYAEVDEIV-EKR 196

Query: 332 GNGETALHVLARK 344
           G G+   +++  K
Sbjct: 197 GKGKDVEYLVRWK 209

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 25/158 (15%), Positives = 39/158 (24%), Gaps = 56/158 (35%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS----------RNQDTALHIAAGARRTLFVQ 215
            L   A  G           + + V +             R   TALH+AAG  R   V+
Sbjct: 80  ALLFVAGLG-----------SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 216 EL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS-------- 261
            L      + +         ++ G TAL  A     T      +   R +          
Sbjct: 129 ALVELGADIEV--------EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 262 -------------IRGNKGATPLCMAALLGHKEMIWYL 286
                         +  KG     +       +  W  
Sbjct: 181 GQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 16/100 (16%)

Query: 247 KIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA 306
           ++ +++ ++          +GA    +    GH              D+  E       A
Sbjct: 2   EVNKIIGSRT-------AGEGAMEYLIEWKDGHSPSWVPSSY--IAADVVSEYETPWWTA 52

Query: 307 VIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLARK 344
                       L++         A D NG TAL  +A  
Sbjct: 53  ARK-ADEQALSQLLED----RDVDAVDENGRTALLFVAGL 87

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 22/157 (14%)

Query: 200 TALHIAAGARRTLFVQEL-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 252
             LH A        VQEL       +          +++ G   L ++      +I   +
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQ--------KDQDGRIPLHWSVSFQAHEITSFL 55

Query: 253 VNK--NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAV 307
           ++K  N  L     + G TP  +A  +G+ E++  LY    + DL +        L +AV
Sbjct: 56  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115

Query: 308 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                ++V+  LI++   +   +D   +  LH  A  
Sbjct: 116 GK-KWFEVSQFLIENGASVR-IKDKFNQIPLHRAASV 150

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 63.6 bits (156), Expect = 2e-11
 Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 43/201 (21%)

Query: 166 PLHLAALKGDWDFARNFF-----NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL- 217
           PLH A ++ ++   +         L          ++QD    LH +   +       L 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLL--------QKDQDGRIPLHWSVSFQAHEITSFLL 56

Query: 218 -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV------NKNRELPSIRGNK 266
                VNL    D       G T    A   G  ++ + +       + N        N+
Sbjct: 57  SKMENVNLDDYPD-----DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQ 106

Query: 267 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHH 323
           G T L +A      E+  +L        ++ +D+     L  A    G   +   L    
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKFNQIPLHRAASV-GSLKLIELLCGLG 163

Query: 324 PQLAMARDGNGETALHVLARK 344
                 +D  G T L     +
Sbjct: 164 KSAVNWQDKQGWTPLFHALAE 184

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 21/190 (11%)

Query: 166 PLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 221
           PLH +      +          N+N +        +  T  HIA        V+ L +  
Sbjct: 39  PLHWSVSFQAHEITSFLLSKMENVNLDDYP---DDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 222 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALL 277
              DL      G T L  A      ++++ ++    +       I+      PL  AA +
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-----IKDKFNQIPLHRAASV 150

Query: 278 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 334
           G  ++I  L  +  +  +  +D+     L  A+ + G  D A+ L++ +       D  G
Sbjct: 151 GSLKLIELLCGL-GKSAVNWQDKQGWTPLFHALAE-GHGDAAVLLVEKYGAEYDLVDNKG 208

Query: 335 ETALHVLARK 344
             A  V   +
Sbjct: 209 AKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 232 VGNTALCFAAVSG-VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS-- 288
           + N  L  A +     K+ E++ +K       +   G  PL  +      E+  +L S  
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 289 --VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAM-ARDGNGETALHVLARK 344
             V  ++   +       +A    G  +V   L     +  +      G T LH+   K
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 24/130 (18%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS---------RNQDTALHIAAGARRTLFVQE 216
            LHLA  K              E     I          +     LH AA       ++ 
Sbjct: 110 CLHLAVGKK-----------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 276
           L  L     +  ++K G T L  A   G    A ++V K      +  NKGA    +A  
Sbjct: 159 LCGL-GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL- 216

Query: 277 LGHKEMIWYL 286
             ++++  + 
Sbjct: 217 --NEQVKKFF 224

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 43/203 (21%)

Query: 164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRIS-------RNQD--TALHIAAGARRTLFV 214
            A L  A  +              +   +           + +  T L+IA         
Sbjct: 7   GALLEAANQRD-----------TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 215 QEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGA 268
           + L      +NL        +N + ++   +A   G T+I   M+       +     G 
Sbjct: 56  KALIDRGADINL--------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG 107

Query: 269 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALD----LIQ 321
             L  AA  GH + +  L    +E D+  ++      L+ AV       +  D    L++
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGRE-DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 322 HHPQLAMARDGNGETALHVLARK 344
           +    +  +D +G TA+    +K
Sbjct: 167 NGADQS-IKDNSGRTAMDYANQK 188

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 228 LRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMI 283
           ++       L  A      K+ E++       +         +G TPL +A      E+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD-----EVDTEGNTPLNIAVHNNDIEIA 55

Query: 284 WYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
             L    +  D+  ++ I     L A    G  ++   +++H        +  G  AL  
Sbjct: 56  KALID--RGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNRYGGNALIP 112

Query: 341 LARK 344
            A K
Sbjct: 113 AAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 30/139 (21%)

Query: 166 PLHLAALKGDWDFARNF-----FNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELV 218
           P   A  +G  +           +LN          N+    AL  AA       V+ L+
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLN--------KHNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 219 NLMTPEDLALRNKVGNTALCFAAVSGVTK-----IAEVMV----NKNRELPSIRGNKGAT 269
                ED+  +N  G TAL  A            I ++++    +++     I+ N G T
Sbjct: 127 E-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS-----IKDNSGRT 180

Query: 270 PLCMAALLGHKEMIWYLYS 288
            +  A   G+ E+   L  
Sbjct: 181 AMDYANQKGYTEISKILAQ 199

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 164 YAPLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQD--TALHIAAGARRTLFVQEL-- 217
            A L  ++L+G++D  +       +P         N +  TALH A  A  T  V+ L  
Sbjct: 38  LALLLDSSLEGEFDLVQRIIYEVDDPSL------PNDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 218 ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGATPL 271
               VN          +  G T L  AA     ++ + +V         +    + A   
Sbjct: 92  FGVNVNA--------ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143

Query: 272 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH-HPQLAMAR 330
           C     G+ +   +LY    +E +   ++  ++ A+ D    +     ++       + R
Sbjct: 144 CEEMEEGYTQCSQFLYG--VQEKMGIMNK-GVIYALWDYEPQNDDELPMKEGDCMTIIHR 200

Query: 331 DGNGETALHV 340
           +   E     
Sbjct: 201 EDEDEIEWWW 210

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 36/195 (18%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR--------NQDTALHIAAGARRTLFVQEL 217
            L                    +    RI+              L  ++       VQ +
Sbjct: 8   SLPPGKRTN-----------LRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 273
           +  +   D +L N  G TAL  A  +G T+I + +V    N N        + G TPL  
Sbjct: 57  IYEVD--DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-----ADSDGWTPLHC 109

Query: 274 AALLGHKEMIWYLYS----VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMA 329
           AA   + ++  +L      V        +   +    + + G    +  L     ++   
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE-GYTQCSQFLYGVQEKMG-I 167

Query: 330 RDGNGETALHVLARK 344
            +     AL     +
Sbjct: 168 MNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
            +L             E       V           N +    L  +++ G   + + ++
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVK---------FNPLPLALLLDSSLEGEFDLVQRII 57

Query: 254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
            +  + PS+  ++G T L  A   GH E++ +L  
Sbjct: 58  YEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-GATPLCMAALLGHKEMIWYLYSVTK 291
           G  +L     + + K     +        ++ N      L  ++L G  +++  +    +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMR---VKFNPLPLALLLDSSLEGEFDLVQRIIY--E 59

Query: 292 EEDLKEED---RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
            +D    +      L  AV   G  ++   L+Q    +  A D +G T LH  A  
Sbjct: 60  VDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASC 113

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 39/175 (22%)

Query: 199 DTALHIAAGARRTLFVQEL-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEV 251
           ++ L +AA       + +L       V+         R  +G TAL  AA+    + A V
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQ--------RGAMGETALHIAALYDNLEAAMV 55

Query: 252 MV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV-----TKEEDLKEEDRIE 302
           ++        E  +    +G T L +A +  +  ++  L +       +        R  
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 303 ---------LLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLARKPS 346
                    L  A    G  ++   LI+H    A   A+D  G T LH+L  +P+
Sbjct: 116 NLIYYGEHPLSFAACV-GSEEIVRLLIEHG---ADIRAQDSLGNTVLHILILQPN 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 34/211 (16%), Positives = 55/211 (26%), Gaps = 75/211 (35%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS--------------RNQDTALHIAAGARRT 211
            LH+AAL             N EA  V +                   TALHIA   +  
Sbjct: 40  ALHIAALYD-----------NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88

Query: 212 LFVQELV-----------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKN 256
             V+ L+             +           G   L FAA  G  +I  +++    +  
Sbjct: 89  NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148

Query: 257 RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV---AVIDAGLY 313
                 + + G T L +  L  +K     +                LL+           
Sbjct: 149 -----AQDSLGNTVLHILILQPNKTFACQM--------------YNLLLSYDGGDHLK-- 187

Query: 314 DVALDLIQHHPQLAMARDGNGETALHVLARK 344
                       L +  +  G T   +   +
Sbjct: 188 -----------SLELVPNNQGLTPFKLAGVE 207

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 34/149 (22%)

Query: 166 PLHLAALKGDWDFAR---------NFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFV 214
            LH+A +  + +  R         +             +        L  AA       V
Sbjct: 78  ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137

Query: 215 QEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV--------NKN-REL 259
           + L      +          ++ +GNT L    +      A  M           + + L
Sbjct: 138 RLLIEHGADIRA--------QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 260 PSIRGNKGATPLCMAALLGHKEMIWYLYS 288
             +  N+G TP  +A + G+  M  +L  
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 28/107 (26%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PL  AA  G           + E V + I             +T LHI        F  +
Sbjct: 124 PLSFAACVG-----------SEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQ 172

Query: 217 LVNLM--------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 255
           + NL+              + N  G T    A V G   + + ++ K
Sbjct: 173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 35/166 (21%), Positives = 55/166 (33%), Gaps = 17/166 (10%)

Query: 194 ISRNQDTALHIAAGARRTLFVQELVNL-MTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 252
           ++ + DTALH+A   +   F+  L+      E L L+N +G TAL  AA+ G     E +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 253 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL--------------YSVTKEEDLKEE 298
                    +    G T L +A  +        L              Y    ++   + 
Sbjct: 65  YAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 299 DRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                 V        +          QL  A + +G T LHV    
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIH 168

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 19/193 (9%)

Query: 166 PLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQD-------TALHIAAGARRTLFV 214
            LHLA        A        +   +A    ++++QD           + +        
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 215 QELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 274
           +          L   N  G+T L  A +    ++  ++ +   +L       G TPL +A
Sbjct: 141 EPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199

Query: 275 ALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARD 331
                  ++  L  +    D           L  A++      +A  L  H         
Sbjct: 200 VEAQAASVLELL--LKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEP-EDG 255

Query: 332 GNGETALHVLARK 344
           G+  +        
Sbjct: 256 GDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 36/206 (17%), Positives = 55/206 (26%), Gaps = 45/206 (21%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS---------RNQDTALHIAA---------- 206
            LHLAA+ G               V    +         R   TALH+A           
Sbjct: 48  ALHLAAILG-----------EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 207 ----GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI 262
                       ++  +    +         +      +        E      R     
Sbjct: 97  LLQPRPSHP---RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153

Query: 263 RGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE----LLVAVIDAGLYDVALD 318
               G TPL +A +    EM+  L       DL + +       L +AV +A    V   
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAV-EAQAASVLEL 210

Query: 319 LIQHHPQLAMARDGNGETALHVLARK 344
           L++       AR   G T L     +
Sbjct: 211 LLKAGADPT-ARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 33/152 (21%)

Query: 150 GAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRIS-------RNQD--T 200
             ++   +    TS+AP  + +            N   E               N D  T
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQP----------NPENEEEPRDEDWRLQLEAENYDGHT 160

Query: 201 ALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVN 254
            LH+A   +    V+ L      +N             G T L  A  +    + E+++ 
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLN-------KPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 255 KNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
              + P+ R   G TPL  A L  +  +   L
Sbjct: 214 AGAD-PTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 36/146 (24%)

Query: 166 PLHLAALKGDWDFARNFF------NLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL-- 217
           PLH+A +  D +  R         +LN             T LH+A  A+    ++ L  
Sbjct: 161 PLHVAVIHKDAEMVR--LLRDAGADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 218 ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 273
                          R   G T L  A +     +A ++           G    +P   
Sbjct: 214 AGADPTA--------RMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSS 264

Query: 274 AALLGHKEMIWYLYSVTKEEDLKEED 299
           +      +          +E  + +D
Sbjct: 265 SGSDSDSDNR--------DEGDEYDD 282

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 37/195 (18%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            LHLAA                +A    +  + D         T LH A  A      Q 
Sbjct: 60  ALHLAARYS-----------RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 272
           L+      DL  R   G T L  AA   V  + E ++    + N        + G + L 
Sbjct: 109 LIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALH 162

Query: 273 MAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMA 329
            AA + + +    L       +   ++  E   L +A  + G Y+ A  L+ H       
Sbjct: 163 WAAAVNNVDAAVVLLK--NGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANR-DI 218

Query: 330 RDGNGETALHVLARK 344
            D        +   +
Sbjct: 219 TDHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 33/200 (16%)

Query: 166 PLHLAALKGDWDFARNFF--NLNPEAVCVRIS----------RNQDTALHIAAGARRTLF 213
           PL +A+  G      N       P  +   I           R  +TALH+AA   R+  
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 214 VQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG 267
            + L       N+        ++ +G T L  A  +    + ++++         R + G
Sbjct: 73  AKRLLEASADANI--------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124

Query: 268 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHP 324
            TPL +AA L  + M+  L  +    D+   D +    L  A       D A+ L+++  
Sbjct: 125 TTPLILAARLAVEGMLEDL--INSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGA 181

Query: 325 QLAMARDGNGETALHVLARK 344
                ++   ET L + AR+
Sbjct: 182 NKD-MQNNREETPLFLAARE 200

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 39/140 (27%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
           PL LAA                  +   I+ + D         +ALH AA          
Sbjct: 127 PLILAARLA-----------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGA 268
           L       ++        +N    T L  AA  G  + A+V+++   NR+   I  +   
Sbjct: 176 LLKNGANKDM--------QNNREETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDR 224

Query: 269 TPLCMAALLGHKEMIWYLYS 288
            P  +A    H +++  L  
Sbjct: 225 LPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 28/151 (18%)

Query: 197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN 256
           +  T L IA+                       +  G              +    + + 
Sbjct: 9   DGFTPLMIAS----------------------CSGGGLETGNSEEEEDAPAVISDFIYQG 46

Query: 257 RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLY 313
             L +     G T L +AA     +    L       D   +D +    L  AV  A   
Sbjct: 47  ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAV-SADAQ 103

Query: 314 DVALDLIQHHPQLAMARDGNGETALHVLARK 344
            V   LI++      AR  +G T L + AR 
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLILAARL 134

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 41/205 (20%), Positives = 60/205 (29%), Gaps = 32/205 (15%)

Query: 150 GAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQD--TALHIA 205
                   R        L  AAL G+ +  +       +P         N++  TALH A
Sbjct: 8   AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ------PNEEGITALHNA 61

Query: 206 AGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 259
                   V  L      VN          +  G T L  AA    T I   +V     +
Sbjct: 62  ICGANYSIVDFLITAGANVNS--------PDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

Query: 260 PSIRGNKGATPL--CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA--GLYDV 315
            +   + GAT    C     G+ +   YL     E+ +   +    + A+ D      D 
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLAD--VEQSMGLMNS-GAVYALWDYSAEFGDE 170

Query: 316 ALDLIQHHPQLAMARDGNGETALHV 340
                       + RDG  ET    
Sbjct: 171 LSFREGESVT-VLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 25/132 (18%), Positives = 34/132 (25%), Gaps = 23/132 (17%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRT--LFVQELVNLM 221
           PLH AA   D               A       +  TA       R         L ++ 
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATT---LSDGATAFEKCDPYREGYADCATYLADVE 146

Query: 222 TPEDLALRNKVGNTALCFAAVSGVTKIAEVM------VNKNRELPSIRGNKGATPLCMAA 275
             + + L N     AL   +        E+       V   R     R     T    AA
Sbjct: 147 --QSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTVLR-----RDGPEETDWWWAA 196

Query: 276 LLGHKEMIWYLY 287
           L G +  +   Y
Sbjct: 197 LHGQEGYVPRNY 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 6e-11
 Identities = 93/632 (14%), Positives = 187/632 (29%), Gaps = 187/632 (29%)

Query: 83  LQPPQAISSS---IDFFEARGPDA-----HVVLDPS---IWPMYASSDQVPSTSAELSRA 131
           +    A+S +        ++  +        VL  +   +     +  + PS    +   
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 132 AAD----ESSGFAQPAVSLSQPGAVSGGVE--RNCFTSYAP-----LH---------LAA 171
             D    ++  FA+  VS  QP          R       P     +          +A 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP------YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 172 --LKGDWDFARNFFN----LN------PEAV-------CVRISRNQDTALHIAAGARRTL 212
                 +            LN      PE V         +I  N  +    ++  +  +
Sbjct: 169 DVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 213 --FVQELVNLMTPED-----LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 265
                EL  L+  +      L L N V N            K         + L + R  
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN-VQNA-----------KAWNAFNLSCKILLTTR-F 274

Query: 266 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ 325
           K  T    AA   H  +  +  ++T +E         LL+  +D    D+  +++  +P+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLPREVLTTNPR 328

Query: 326 L-----AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA 380
                    RDG                   +    W+    +   +  I++  L  L+ 
Sbjct: 329 RLSIIAESIRDGL------------------ATWDNWKH--VNCDKLTTIIESSLNVLEP 368

Query: 381 LELVKRLWEQVLLLDDSKIGELLRKPSRLL---FTAVELGNVEFLMVLIQMYPNLIWKVD 437
            E  K      +    + I      P+ LL   +  V   +V  ++  +  Y +L+ K  
Sbjct: 369 AEYRKMFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEK-- 419

Query: 438 DHSRSMFHIAVVHRQEKI-FNLIYELGAHKDLIASY----KDENNNNMLHLAGKLAPPDR 492
               S   I  ++ + K+     Y L  H+ ++  Y      ++++        L PP  
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDD--------LIPP-- 467

Query: 493 LKIDSGAALQLRRELHWFKEIEKVVQPSY--REAKNSEGRTPHILFSEEHRRLVREGEKW 550
             +D           +++  I       +  +  ++ E  T   LF            ++
Sbjct: 468 -YLDQ----------YFYSHI------GHHLKNIEHPERMT---LFRMVFLDF-----RF 502

Query: 551 MKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSA 610
           ++           +      + A+   G   ++  +     YK ++         L    
Sbjct: 503 LE---------QKIRHD---STAWNASGSILNTLQQ--LKFYKPYICDNDPKYERLVN-- 546

Query: 611 TSILMFLSIITSRYAEEDFVHSLPNRLIIGLA 642
            +IL FL        EE+ + S     ++ +A
Sbjct: 547 -AILDFL-----PKIEENLICS-KYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 67/399 (16%), Positives = 127/399 (31%), Gaps = 100/399 (25%)

Query: 389 EQVLLLDDSKIGELLRKPSRLLFTAVELG---NVEFLMVLIQMY---PNLIWKVDDHSRS 442
              L L       LL K   ++   VE     N +FLM  I+     P+++ ++    R 
Sbjct: 62  SGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 443 MFHIAV-------VHRQEKIFNL---IYEL------------GAHK-----DLIASYK-- 473
             +          V R +    L   + EL            G+ K     D+  SYK  
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 474 DENNNNM--LHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRT 531
            + +  +  L+L    +P   L++     L  + + +W    +       R   + +   
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLR-IHSIQAEL 234

Query: 532 PHILFSEEHRR-L-----VREGEKWMKDTASSCMVVAT----LIATVMFAAAFTVPGGND 581
             +L S+ +   L     V+  + W      SC ++ T     +   + AA  T    + 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 582 DSTGRPIFLHYKSFMVFAVSDALALFCS-------ATSIL-MFLSIITSRYAE-----ED 628
            S         +   +        L C          +     LSII     +     ++
Sbjct: 294 HSMT---LTPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 629 FVHSLPNRL--IIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFA 686
           + H   ++L  II  +   +  A     F      V       I          P  L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVFPPS-AHI----------PTILLS 393

Query: 687 LLQFPLLS----DMISHLYKYSIFTRRSN------HLLY 715
           L+ F ++      +++ L+KYS+  ++          +Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 81/519 (15%), Positives = 148/519 (28%), Gaps = 158/519 (30%)

Query: 46  VCSDDDISLKDAFGPGFFYHANYG----PSS---------NGASGNQNSHLQPPQAISSS 92
           VC    +  +       F+  N      P +              N  S       I   
Sbjct: 170 VCLSYKV--QCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 93  ID---------FFEARGPDAHVVLD----PSIWPMYASSDQVPSTSAELSRAAADESSGF 139
           I                 +  +VL        W  +  S ++  T+    +   D  S  
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAA 284

Query: 140 AQPAVSLSQPGAVSGGVE----RNCFTSYA---------------PLHL---AALKGD-- 175
               +SL      S  +     ++    Y                P  L   A    D  
Sbjct: 285 TTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 176 --WDFARNFFNLNPEAVCVRIS---RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN 230
             WD   N+ ++N + +   I       + A +      R +F   L   + P    +  
Sbjct: 342 ATWD---NWKHVNCDKLTTIIESSLNVLEPAEY------RKMF-DRLS--VFPPSAHIPT 389

Query: 231 KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL--GHKEMIWYLYS 288
            +    L       +     V+VNK               L   +L+    KE    + S
Sbjct: 390 IL----LSLIWFDVIKSDVMVVVNK---------------LHKYSLVEKQPKESTISIPS 430

Query: 289 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF 348
           +  E  +K E+   L  +++D   Y            +    D +     ++        
Sbjct: 431 IYLELKVKLENEYALHRSIVDH--Y-----------NIPKTFDSDDLIPPYL-------- 469

Query: 349 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE-QVLLLDDSKIGELLRKPS 407
                  ++    YS  G          HL+ +E  +R+   +++ LD   + + +R  S
Sbjct: 470 -----DQYF----YSHIG---------HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 408 RLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 467
                +  + N   L  L + Y   I   D     +           I + + ++  +  
Sbjct: 512 TAWNASGSILNT--LQQL-KFYKPYICDNDPKYERLV--------NAILDFLPKIEEN-- 558

Query: 468 LIAS-YKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRR 505
           LI S Y D     +L +A  L   D    +  A  Q++R
Sbjct: 559 LICSKYTD-----LLRIA--LMAEDEAIFEE-AHKQVQR 589

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.7 bits (151), Expect = 7e-11
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 37/195 (18%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            LHLAA                +A    +  + D         T LH A  A      Q 
Sbjct: 28  ALHLAARYS-----------RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 272
           L+      DL  R   G T L  AA   V  + E ++    + N        + G + L 
Sbjct: 77  LIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALH 130

Query: 273 MAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMA 329
            AA + + +    L       +   ++  E   L +A  + G Y+ A  L+ H       
Sbjct: 131 WAAAVNNVDAAVVLLK--NGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANR-DI 186

Query: 330 RDGNGETALHVLARK 344
            D        +   +
Sbjct: 187 TDHMDRLPRDIAQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
           TALH+AA   R+   + L       N+        ++ +G T L  A  +    + ++++
Sbjct: 27  TALHLAARYSRSDAAKRLLEASADANI--------QDNMGRTPLHAAVSADAQGVFQILI 78

Query: 254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDA 310
                    R + G TPL +AA L  + M+  L +     D+   D +    L  A    
Sbjct: 79  RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SHADVNAVDDLGKSALHWAAAV- 135

Query: 311 GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
              D A+ L+++       ++   ET L + AR+
Sbjct: 136 NNVDAAVVLLKNGANKD-MQNNREETPLFLAARE 168

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.6 bits (125), Expect = 1e-07
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 229 RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 284
            ++ G TAL  AA    +  A+ ++    + N     I+ N G TPL  A     + +  
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQ 75

Query: 285 YLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 341
            L    +  DL          L++A     +  +  DLI  H  +  A D  G++ALH  
Sbjct: 76  ILIRN-RATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVN-AVDDLGKSALHWA 132

Query: 342 ARK 344
           A  
Sbjct: 133 AAV 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 43/142 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
           PL LAA                  +   I+ + D         +ALH AA          
Sbjct: 95  PLILAARLA-----------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L       ++        +N    T L  AA  G  + A+V++    N++     I  + 
Sbjct: 144 LLKNGANKDM--------QNNREETPLFLAAREGSYETAKVLLDHFANRD-----ITDHM 190

Query: 267 GATPLCMAALLGHKEMIWYLYS 288
              P  +A    H +++  L  
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 248 IAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LL 304
           +    + +   L +     G T L +AA     +    L       D   +D +    L 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLH 63

Query: 305 VAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
            AV  A    V   LI++      AR  +G T L + AR 
Sbjct: 64  AAVS-ADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 9e-11
 Identities = 44/210 (20%), Positives = 66/210 (31%), Gaps = 53/210 (25%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
           PLH A                 + V + +    D         T   +AA A     ++ 
Sbjct: 42  PLHNAVQMS-----------REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV---------NKNRELPS 261
                  VN          +  G TA   AAV G  K  + +           K +E   
Sbjct: 91  FLSKGADVNE--------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142

Query: 262 IRGNKGATPLCMAALLGHKEMIWYLYSVT----KEEDLKEEDRIELLVAVI---DAGLYD 314
                GAT L  AA  GH E++  L           D     R  L+ A++   D+ +  
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD--NMGRNALIHALLSSDDSDVEA 200

Query: 315 VALDLIQHHPQLAMARDGNGETALHVLARK 344
           +   L+ H   +   R   G+T L +   K
Sbjct: 201 ITHLLLDHGADV-NVRGERGKTPLILAVEK 229

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 40/202 (19%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
            L  A    D D  +       N      +      T LH A    R   V+ L      
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNF---QEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 273
                     LR K G T    AA++G  K+ ++ +    + N          G T    
Sbjct: 65  PV--------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFME 111

Query: 274 AALLGHKEMIWYLYSV-----TKEEDLKEEDRIE------LLVAVIDAGLYDVALDLIQH 322
           AA+ G  + + +LY        + +  ++++R+       L+ A    G  +V   L+  
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDE 170

Query: 323 HPQLAMARDGNGETALHVLARK 344
                 A D  G  AL      
Sbjct: 171 MGADVNACDNMGRNALIHALLS 192

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 57/196 (29%)

Query: 166 PLHLAALKGDWDFAR---------NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQE 216
               AA+ G     +         N      +    R+ +   TAL  AA       ++ 
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRR-KTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV--------NKNRELPSIRGNKGA 268
           L++ M   D+   + +G  AL  A +S      E +         + N     +RG +G 
Sbjct: 167 LLDEMGA-DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-----VRGERGK 220

Query: 269 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAM 328
           TPL +A    H  ++  L              +E     I+                   
Sbjct: 221 TPLILAVEKKHLGLVQRL--------------LEQEHIEIND------------------ 248

Query: 329 ARDGNGETALHVLARK 344
             D +G+TAL +    
Sbjct: 249 -TDSDGKTALLLAVEL 263

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.6 bits (130), Expect = 6e-08
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 23/133 (17%)

Query: 166 PLHLAALKGDWDFAR---NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMT 222
            L  AA KG  +  +   +    +  A           AL  A  +     V+ + +L  
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHL-- 204

Query: 223 PEDLAL---------RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 273
                L         R + G T L  A       + + ++ +     +   + G T L +
Sbjct: 205 -----LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

Query: 274 AALLGHKEMIWYL 286
           A  L  K++   L
Sbjct: 260 AVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 37/168 (22%)

Query: 199 DTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 252
           +  L  A        VQ+L      VN           + G T L  A       I E++
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-------EEGGWTPLHNAVQMSREDIVELL 58

Query: 253 V----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLV 305
           +    +       +R   GATP  +AA+ G  +++     ++K  D+ E D       + 
Sbjct: 59  LRHGADPV-----LRKKNGATPFLLAAIAGSVKLLKLF--LSKGADVNECDFYGFTAFME 111

Query: 306 AVIDAGLYDVALDLIQH---------HPQLAMARDGNGETALHVLARK 344
           A +  G       L +            +        G TAL   A K
Sbjct: 112 AAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 7/118 (5%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
               N  L  A  +    + + ++     +       G TPL  A  +  ++++  L   
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 290 TKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
               D     +      L+A I  G   +    +     +    D  G TA    A  
Sbjct: 61  -HGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVY 115

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 28/149 (18%)

Query: 166 PLHLAALKGDWDF------------ARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLF 213
            LH+A  + +               A    +   +          +  L +AA   +   
Sbjct: 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 214 VQELV-NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM---------------VNKNR 257
           V+ L+ N   P D++ R+ VGNT L          +                   ++   
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 258 ELPSIRGNKGATPLCMAALLGHKEMIWYL 286
           +L  I   KG TPL +AA  G   ++ Y+
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 33/205 (16%), Positives = 54/205 (26%), Gaps = 44/205 (21%)

Query: 166 PLHLAAL---KGDWDFAR---------NFFNLNPEAVCVRISRNQDTALHIAAGARRTLF 213
            L  A L    G  D            +       A          TALHIA   R    
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 214 VQELV------------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL-- 259
           V  LV            +             G   L  AA +    I + ++  + +   
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 260 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 319
            S R + G T L     +    +                D  + + ++ +  +  +   L
Sbjct: 177 ISARDSVGNTVLHALVEVADNTV----------------DNTKFVTSMYN-EILILGAKL 219

Query: 320 IQHHPQLAMARDGNGETALHVLARK 344
                +L    +  G T L + A  
Sbjct: 220 H-PTLKLEEITNRKGLTPLALAASS 243

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 23/130 (17%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS-RNQDTALHIAA-----GARRTLFVQELVN 219
           PL LAA        +     + +   +       +T LH            T FV  + N
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 220 L---------MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
                      T +   + N+ G T L  AA SG   +   ++ +               
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPEC 262

Query: 271 LCMAALLGHK 280
              AA   H 
Sbjct: 263 RHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 34/202 (16%), Positives = 55/202 (27%), Gaps = 46/202 (22%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEA----VCVRISRNQD--TALHIAAGARRTLFVQELVN 219
            +  A  + +     +       +            +   T L  A              
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM------------- 62

Query: 220 LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH 279
                 L L N   +T      V+  T   +  VN +    +    KG T L +A    +
Sbjct: 63  ------LNLHNGQNDTIALLLDVARKTDSLKQFVNAS---YTDSYYKGQTALHIAIERRN 113

Query: 280 KEMIWYL---------------YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 324
             ++  L               +  TK         + L +A        +   L+Q+  
Sbjct: 114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQNSW 172

Query: 325 QLAM--ARDGNGETALHVLARK 344
           Q A   ARD  G T LH L   
Sbjct: 173 QPADISARDSVGNTVLHALVEV 194

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.9 bits (149), Expect = 2e-10
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
            +  A   G ++  R       +         +   T LH AA   R   V+        
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQP----DKENVTLLHWAAINNRIDLVKYYISKGAI 67

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 277
           V+        L   + +T L +A   G   +   ++    + PS+   +G + + +AA  
Sbjct: 68  VD-------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQF 119

Query: 278 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 334
           GH  ++ YL +  K +D+   D+     L+ A       D    L+  +  + +    + 
Sbjct: 120 GHTSIVAYLIA--KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177

Query: 335 ETALHVLARK 344
            TALH     
Sbjct: 178 NTALHWAVLA 187

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.7 bits (133), Expect = 2e-08
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
             +  A         +EL      V           +K   T L +AA++    + +  +
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQ--------PDKENVTLLHWAAINNRIDLVKYYI 62

Query: 254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDA 310
           +K   +  + G+  +TPL  A   GH  M+  L       D    D      + +A    
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--YGADPSLIDGEGCSCIHLAAQF- 119

Query: 311 GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           G   +   LI     +    D NG T L   A +
Sbjct: 120 GHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.7 bits (133), Expect = 2e-08
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 47/201 (23%)

Query: 166 PLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQD---TALHIAAGARRTLFVQEL- 217
            LH AA+    D  + +      ++            D   T LH A        V +L 
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVD--------QLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 218 -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGA 268
                 +L         +  G + +  AA  G T I   ++    + +     +    G 
Sbjct: 97  KYGADPSL--------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-----MMDQNGM 143

Query: 269 TPLCMAALLGH-KEMIWYLYSVTKEEDLKEEDRIE----LLVAVIDAGLYDVALDLIQHH 323
           TPL  AA   H  +    L  +T    +   D+      L  AV+ AG   V   L++  
Sbjct: 144 TPLMWAAYRTHSVDPTRLL--LTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAG 200

Query: 324 PQLAMARDGNGETALHVLARK 344
             +  A++  GE+AL +  ++
Sbjct: 201 ANVD-AQNIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.7 bits (133), Expect = 2e-08
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 43/141 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            +HLAA  G           +   V   I++ QD         T L  AA    ++    
Sbjct: 112 CIHLAAQFG-----------HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

Query: 217 L-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGN 265
           L       VN              NTAL +A ++G T +  +++    N +      +  
Sbjct: 161 LLLTFNVSVN-------LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-----AQNI 208

Query: 266 KGATPLCMAALLGHKEMIWYL 286
           KG + L +A    +  MI +L
Sbjct: 209 KGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 8e-07
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 13/122 (10%)

Query: 229 RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 284
            +      +  A   G+ +    +V    +           +  T L  AA+    +++ 
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAAINNRIDLVK 59

Query: 285 YLYSV--TKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 342
           Y  S     ++   + +   L  A    G   + + L+++        DG G + +H+ A
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADP-SLIDGEGCSCIHLAA 117

Query: 343 RK 344
           + 
Sbjct: 118 QF 119

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 166 PLHLAALKGDWDFAR-----NFFNLNPEAVCVRISRNQDTALHIAA--GARRTLFVQEL- 217
            LH AA   D+              + E     + RN  TAL I A    R  +   +L 
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEE----LDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 218 ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV-----NKNRELPSIRGNK 266
                 V+             G TAL +AA      I + +V     NK+      +   
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----KQDED 312

Query: 267 GATPLCMAALLGHKEMIWYLYS 288
           G TP+ +AA  G  E++ YL  
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQ 334

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 41/208 (19%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            LH  A     + + +   L        I+   D         T L +A  ARR   V  
Sbjct: 128 VLHWIASNSSAEKSED---LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI--RGNKGA 268
           L        +         NK   +AL  AA +    +   M+N  +    I      G 
Sbjct: 185 LMKAGADPTI--------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 269 TPLCMAALLGHKEMIW---YLYS------VTKEEDLKEEDRIE---LLVAVIDAGLYDVA 316
           T L + A    ++ +     L                 E       L  A        + 
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV-SNMPIV 295

Query: 317 LDLIQHHPQLAMARDGNGETALHVLARK 344
             L+         +D +G+T + + A++
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQE 323

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
            LH  A  G +         +     +   R+  T LH  A        ++L+     E 
Sbjct: 97  KLHTEA-AGSYAITEPITRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 226 LAL------RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAA 275
           +A        +   NT L  A ++   ++   ++    +       I      + L  AA
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-----IYNKSERSALHQAA 207

Query: 276 LLGHKEMIWYLYSVTKEE-DLKEEDRIE---LLVAVIDAGLYDVALD--LIQH------- 322
                 M+ Y+ + TK + D++E DR     L++   + G   VA    L++        
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 323 HPQLAMARDGNGETALHVLARK 344
                 +    G TALH  A+ 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQV 289

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 29/222 (13%), Positives = 48/222 (21%), Gaps = 59/222 (26%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
            L  A+  G     RN            +            G                + 
Sbjct: 40  SLLEASYDGYIKRQRNE-----------LQHYSLYPNPQGYGNGNDFLGDFNHT--NLQI 86

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
                      L   A +G   I E +  ++  +  I      T L   A     E    
Sbjct: 87  PTEPEPESPIKLHTEA-AGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSED 143

Query: 286 LYSVTKEE------DLKEEDR-----------------IELLV---AVIDA--------- 310
           L     +E      D+   D                  +  L+   A             
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 203

Query: 311 ------GLYDVALDLIQHHPQLA--MARDGNGETALHVLARK 344
                   + + + ++            D NG TAL ++A  
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 19/134 (14%)

Query: 166 PLHLAALKGDWDFARNFF-------NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQE 216
            L + A     D   +          ++ +    + S      TALH AA       V+ 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 272
           LV      +   +++ G T +  AA  G  ++   ++    +              T   
Sbjct: 298 LVG-EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-----AVDATDHTARQ 351

Query: 273 MAALLGHKEMIWYL 286
           +A    H  ++   
Sbjct: 352 LAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 15/113 (13%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 292
              +L  A+  G  K     +                P       G+  +  + ++  + 
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHY----------SLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 293 EDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
               E +  I+L      AG Y +   + +    +      +  T LH +A  
Sbjct: 87  PTEPEPESPIKLHTEA--AGSYAITEPITRESVNI--IDPRHNRTVLHWIASN 135

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.3 bits (145), Expect = 3e-10
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

Query: 194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
           + +N +    I         +  L N         R+    T L  A + G+    + +V
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNY--------RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVA 306
                        +  +G+T L  A       +   L S  K  ++  +D      L+ +
Sbjct: 56  ENFDKLE-----DKDIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDFSGKTPLMWS 108

Query: 307 VIDAGLYDVALDLIQHHPQLAM--ARDGNGETALHVLARK 344
           +I  G  +++  L++H    A    R+  GET L V ++ 
Sbjct: 109 IIF-GYSEMSYFLLEHG---ANVNDRNLEGETPLIVASKY 144

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.0 bits (126), Expect = 7e-08
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 43/145 (29%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
            L  A                       +S+         +  T L  +     +     
Sbjct: 71  ALIWAVKNN-----------RLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L      VN         RN  G T L  A+  G ++I + ++    + +      R   
Sbjct: 120 LLEHGANVND--------RNLEGETPLIVASKYGRSEIVKKLLELGADIS-----ARDLT 166

Query: 267 GATPLCMAALLGHKEMIWYLYSVTK 291
           G T    A + G +E+I     V +
Sbjct: 167 GLTAEASARIFGRQEVIKIFTEVRR 191

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 6e-10
 Identities = 38/226 (16%), Positives = 62/226 (27%), Gaps = 74/226 (32%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--------TALHIAAGARRTLFVQEL 217
              L    G           +   +   + + +              A  +  T  V  L
Sbjct: 11  NEQLKRWIG-----------SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 218 ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKG 267
                 +N          N  G TAL  A +     + + +V    N N+       N+G
Sbjct: 60  LERGADINY--------ANVDGLTALHQACIDDNVDMVKFLVENGANINQ-----PDNEG 106

Query: 268 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-----------------IELLVAVIDA 310
             PL  AA  G+ ++  YL  +++   +   +                  ++  V     
Sbjct: 107 WIPLHAAASCGYLDIAEYL--ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164

Query: 311 ------------GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                        L D    L   H         +G TALHV A K
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVAAAK 209

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 38/192 (19%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR-------NQD--TALHIAAGARRTLFVQE 216
           PLH AA  G             +     IS+       N +  T L IA        +Q 
Sbjct: 109 PLHAAASCG-----------YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 217 LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 272
            VN         +      A        +    + +     N  R         G T L 
Sbjct: 158 EVNR--------QGVDIEAARKEEERIMLRDARQWLNSGHINDVR-----HAKSGGTALH 204

Query: 273 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDG 332
           +AA  G+ E++  L     + ++K+ D    L A    G  +    L+++   +  A + 
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNK 263

Query: 333 NGETALHVLARK 344
            G+TA  V    
Sbjct: 264 VGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 48/170 (28%)

Query: 166 PLHLAALKG--------------DWDFARNF--FNLNPEAVCVRISRNQD---------T 200
           PL +A  +               D + AR      +  +A     S + +         T
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201

Query: 201 ALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV- 253
           ALH+AA    T  ++ L      VN+        ++  G T L  AA  G  +   ++V 
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNI--------KDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 254 ---NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR 300
              +            G T   +A       +             K E +
Sbjct: 254 NLCDME-----AVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 262 IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 321
           +   K      +   +G +  +       K+  +K +D    L A    G  +  L L++
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS-GDTEEVLRLLE 61

Query: 322 HHPQLAMARDGNGETALHVLARK 344
               +    + +G TALH     
Sbjct: 62  RGADIN-YANVDGLTALHQACID 83

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRI-SRNQDTALHIAAGARRTLFVQELVNLMTPE 224
           PL LAA    WD          +   +       +T LH                     
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV------------------ 180

Query: 225 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 284
            +   N   N+AL      G+ ++   +     +L  I  ++G TPL +AA  G  E+  
Sbjct: 181 -MIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238

Query: 285 YL 286
           ++
Sbjct: 239 HI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 34/232 (14%), Positives = 61/232 (26%), Gaps = 58/232 (25%)

Query: 166 PLHLAALKGDWDFARN----FFNLNPEAVCVRISRNQD--TALHIAA------------- 206
            L     +G  +            +        +      T L  A              
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 207 ---GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-------- 255
                + +   + LVN             G++AL  A      +  +++V          
Sbjct: 65  LLQIDKDSGNPKPLVN----AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 256 ----NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE-DLKEEDR---IELLVAV 307
                ++        G  PL +AA     +++ YL     +   L+  D      L   V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 308 IDA---------------GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           + A               GL  +   L     QL    +  G T L + A++
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKE 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 28/149 (18%)

Query: 166 PLHLAALKGDWDF------------ARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLF 213
            LH+A  +    +            A+                  +  L +AA   +   
Sbjct: 96  ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155

Query: 214 VQELV-NLMTPEDLALRNKVGNTALCFAAVSG---------VTKIAEVM------VNKNR 257
           V  L  N     DL  ++  GNT L                VTK+ +++      +  + 
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 258 ELPSIRGNKGATPLCMAALLGHKEMIWYL 286
            L ++  N G +PL MAA  G   +  ++
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 35/205 (17%), Positives = 57/205 (27%), Gaps = 44/205 (21%)

Query: 166 PLHLAALKGDW----------DFARNFFNLNPE--AVCVRISRNQDTALHIAAGARRTLF 213
            L  A L              D A    N+     +    +     TALHIA   R   +
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 214 VQELV------------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL-- 259
           V+ LV                P+D       G   L  AA +    I   +     +   
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

Query: 260 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 319
              + ++G T L     +            T+E         +LL+    A         
Sbjct: 169 LRRQDSRGNTVLHALVAIADN---------TRENTKFVTKMYDLLLIK-CAK-------- 210

Query: 320 IQHHPQLAMARDGNGETALHVLARK 344
           +     L    + +G + L + A+ 
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKT 235

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 33/145 (22%)

Query: 229 RNKVGNTALCFAAV---SGVTKIAEVMVNKNRELPSI----------RGNKGATPLCMAA 275
               G T L  A +   +G      ++++   +  ++             +G T L +A 
Sbjct: 42  EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI 101

Query: 276 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY----------------DVALDL 319
               K  +  L  V K  D+  + R        + G +                 +   L
Sbjct: 102 ERRCKHYVELL--VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 320 IQHHPQLAM--ARDGNGETALHVLA 342
            ++  + A    +D  G T LH L 
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALV 184

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ-DTALHIAAGAR-----RTLFVQELVN 219
           PL LAA                +   +R   ++ +T LH            T FV ++ +
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 220 LM---------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 255
           L+              AL N  G + L  AA +G   I + ++ +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 35/138 (25%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
            L +  L             NPE     + R              +H AA A     +Q 
Sbjct: 41  ALQVMKLG------------NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
           L      VN+         +  GN  L  AA  G  ++ E +V         R +KG T 
Sbjct: 89  LLEFQADVNI--------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

Query: 271 LCMAALLGHKEMIWYLYS 288
             +A L G  E++  + +
Sbjct: 141 CDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 30/158 (18%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
             L  AA       +  L      VN         +N  G TAL      G  +IA  ++
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVN--------AQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED---RIELLVA 306
               N +     ++   G   +  AA  G  + +  L     + D+  ED    + L +A
Sbjct: 58  LRGANPD-----LKDRTGFAVIHDAARAGFLDTLQTLLE--FQADVNIEDNEGNLPLHLA 110

Query: 307 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
             + G   V   L++H       R+  G+TA  +    
Sbjct: 111 AKE-GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 233 GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
               L  AA  G  +    ++    N N      +   G T L +   LG+ E+   L  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVN-----AQNGFGRTALQVMK-LGNPEIARRLLL 58

Query: 289 VTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                DLK+      +  A    G  D    L++    +    D  G   LH+ A++
Sbjct: 59  RGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKE 113

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 35/131 (26%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------VN 219
            L  AA  GD +  +    +     C  I   Q T LH AAG  R   V+ L      V+
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 220 LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAA 275
                    ++K G   L  A   G  ++AE++V      N     +      TPL  AA
Sbjct: 70  A--------KDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAA 116

Query: 276 LLGHKEMIWYL 286
             G  E+   L
Sbjct: 117 AKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 227 ALRNKVGNTALCFAAVSGVTKIAEVM-----VNKNRELPSIRGNKGATPLCMAALLGHKE 281
           A+ N   +  L  AA +G  +  + +     VN           + +TPL  AA      
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-----IEGRQSTPLHFAAGYNRVS 56

Query: 282 MIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAM--ARDGNGET 336
           ++ YL       D+  +D+     L  A    G Y+VA  L++H    A+    D    T
Sbjct: 57  VVEYLLQ--HGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHG---AVVNVADLWKFT 110

Query: 337 ALHVLARK 344
            LH  A K
Sbjct: 111 PLHEAAAK 118

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----N 254
           D  L  AA A     V++L  + +  +        +T L FAA      + E ++    +
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 255 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAG 311
            +      +   G  PL  A   GH E+   L        +   D  +   L  A    G
Sbjct: 68  VHA-----KDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVADLWKFTPLHEAAAK-G 119

Query: 312 LYDVALDLIQH--HPQLAMARDGNGETALHV 340
            Y++   L+QH   P     ++ +G T L +
Sbjct: 120 KYEICKLLLQHGADP---TKKNRDGNTPLDL 147

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 37/154 (24%)

Query: 166 PLHLAALKGDWDFARNFF---NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL--- 217
           P   AA K D           +++        + +++  TAL   AG      V+ L   
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVD--------AVDENGRTALLFVAGLGSDKCVRLLAEA 98

Query: 218 ---VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATP 270
              ++             G TAL  AA     ++ E +V    +       +   +G T 
Sbjct: 99  GADLDHRDMRG-------GLTALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTA 146

Query: 271 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELL 304
           L +A  +           +     +  E  I +L
Sbjct: 147 LELAREILKTTPKGNP--MQFGRRIGLEKVINVL 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 31/192 (16%), Positives = 48/192 (25%), Gaps = 68/192 (35%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ--------DTALHIAAGARRTLFVQEL 217
              +    G              +     S           +T    AA       + +L
Sbjct: 17  EYLIEWKDG-------------HSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQL 63

Query: 218 -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC 272
                V+          ++ G TAL F A  G  K   ++     +L       G T L 
Sbjct: 64  LEDRDVDA--------VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115

Query: 273 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDG 332
           MAA     E++  L                     ++ G  D+               D 
Sbjct: 116 MAAGYVRPEVVEAL---------------------VELGA-DIE------------VEDE 141

Query: 333 NGETALHVLARK 344
            G TAL +    
Sbjct: 142 RGLTALELAREI 153

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 16/117 (13%), Positives = 27/117 (23%), Gaps = 43/117 (36%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
              G          G +           ++     ++  TP   AA    ++        
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQA------- 59

Query: 290 TKEEDLKEEDRIELLV--AVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                      +  L+    +D                   A D NG TAL  +A  
Sbjct: 60  -----------LSQLLEDRDVD-------------------AVDENGRTALLFVAGL 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.7 bits (133), Expect = 7e-09
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 35/138 (25%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PL  AA  G               V   +            +++AL +A     T  V+ 
Sbjct: 39  PLMWAAAHG-----------QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
           L      VN          +  G T L +A      K  ++++    + P+I  + G   
Sbjct: 88  LLDCGVDVNE--------YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNS 138

Query: 271 LCMAALLGHKEMIWYLYS 288
           + +A  LG++ +   + S
Sbjct: 139 MDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.9 bits (131), Expect = 1e-08
 Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 43/140 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            +H  A +G               +  RI +            T L  AA   +   V+ 
Sbjct: 6   SVHQLAAQG-----------EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L        L          K   +AL  A   G T I ++++    + N          
Sbjct: 55  LLQNGADPQL--------LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-----EYDWN 101

Query: 267 GATPLCMAALLGHKEMIWYL 286
           G TPL  A    H + +  L
Sbjct: 102 GGTPLLYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.6 bits (125), Expect = 7e-08
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 30/158 (18%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
            ++H  A     L++         +N          ++ G T L +AA  G   + E ++
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVIN--------HTDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVA 306
               +       + G    + L +A   G+ +++  L  +    D+ E D      LL A
Sbjct: 57  QNGADPQ-----LLGKGRESALSLACSKGYTDIVKML--LDCGVDVNEYDWNGGTPLLYA 109

Query: 307 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           V           L++           +G  ++ +    
Sbjct: 110 VHG-NHVKCVKMLLESGADP-TIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 233 GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
            + ++   A  G        +      N         +G TPL  AA  G   ++ +L  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVIN-----HTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 289 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                D +   +     L +A    G  D+   L+     +    D NG T L      
Sbjct: 58  --NGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHG 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.4 bits (132), Expect = 9e-09
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NK 255
             +         + V+  ++  T  DL   +  G + L +A   G + + E+++      
Sbjct: 7   DDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65

Query: 256 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGL 312
           N     +      TPL +AA  GH++++  L  +  + D+   +      L  A    G 
Sbjct: 66  N-----VMNRGDDTPLHLAASHGHRDIVQKL--LQYKADINAVNEHGNVPLHYACFW-GQ 117

Query: 313 YDVALDLIQHHPQLAMARDGNGETALHVLARK 344
             VA DL+ +   +    +  GE  +      
Sbjct: 118 DQVAEDLVANGALV-SICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 39/138 (28%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PLH A  +G               V + I R           DT LH+AA       VQ+
Sbjct: 42  PLHWACREG-----------RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGA 268
           L      +N          N+ GN  L +A   G  ++AE +V         SI    G 
Sbjct: 91  LLQYKADINA--------VNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGE 139

Query: 269 TPLCMAALLGHKEMIWYL 286
            P+  A     + +    
Sbjct: 140 MPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 292
               +      G      + ++      +   + G +PL  A   G   ++  L  + + 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML--IMRG 62

Query: 293 EDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
             +   +R +   L +A    G  D+   L+Q+   +  A + +G   LH     
Sbjct: 63  ARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFW 115

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 7e-04
 Identities = 23/130 (17%), Positives = 34/130 (26%), Gaps = 43/130 (33%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRIS-------RNQD--TALHIAAGARRTLFVQE 216
           PLHLAA  G           + + V   +         N+     LH A    +    ++
Sbjct: 75  PLHLAASHG-----------HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRG-NKGAT 269
           L      V++         NK G   +  A       + E             G N    
Sbjct: 124 LVANGALVSI--------CNKYGEMPVDKAKAPLRELLRERAEKM--------GQNLNRI 167

Query: 270 PLCMAALLGH 279
           P       G 
Sbjct: 168 PYKDTFWKGT 177

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 37/194 (19%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR-------NQDTALHIAAGARRTLFVQEL- 217
             + A               N   VC  ++          +  LH AA    T  V+ L 
Sbjct: 34  ASYYAIADN-----------NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 218 -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG-ATPL 271
                 +          +  GNTAL +A  SG  +  ++ V KN       G  G  T  
Sbjct: 83  FSGLDDS--------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSF 133

Query: 272 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 331
             A +L    ++ Y  S              + + + + G  D+ + L+ +        +
Sbjct: 134 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKN-GHVDMMILLLDYMTSTN-TNN 191

Query: 332 GNGET-ALHVLARK 344
                  + +    
Sbjct: 192 SLLFIPDIKLAIDN 205

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 29/241 (12%), Positives = 65/241 (26%), Gaps = 55/241 (22%)

Query: 152 VSGGVERNCFTSYAPLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGAR 209
           ++ G  +N   +  PLH AA   D    +      L+            +TAL+ A  + 
Sbjct: 51  LNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQF----DDKGNTALYYAVDSG 106

Query: 210 RTLFVQEL------VNLMTPEDLALRNKVG-NTALCFAAVSGVTKIAEVMVNKNRELPSI 262
               V+        +            K G  T+   A +     I    +++     + 
Sbjct: 107 NMQTVKLFVKKNWRLMF--------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--STF 156

Query: 263 RGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR------------------IELL 304
                 + + +    GH +M+  L            +                   ++ L
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLD--YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

Query: 305 V---AVIDAGLYDVALD--------LIQHHPQLAMARDGNGETALHVLARKPSAFASGSQ 353
                 I +   +  L         +I+ H +   +     +  +    +     +   +
Sbjct: 215 FKYDINIYSANLENVLLDDAEIAKMIIEKHVEYK-SDSYTKDLDIVKNNKLDEIISKNKE 273

Query: 354 L 354
           L
Sbjct: 274 L 274

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 22/156 (14%)

Query: 197 NQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 250
           +  +A + A        V  L       N                 L  AA    TKI +
Sbjct: 30  HGHSASYYAIADNNVRLVCTLLNAGALKN----------LLENEFPLHQAATLEDTKIVK 79

Query: 251 VMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE--LLVAVI 308
           +++    +  S   +KG T L  A   G+ + +              +   +     AV+
Sbjct: 80  ILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 309 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                 +    +   P           + +H+  + 
Sbjct: 139 L-NDVSIVSYFLSEIPST--FDLAILLSCIHITIKN 171

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 24/153 (15%)

Query: 200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NK 255
               I          ++L + ++ +D    +  G++A  +A      ++   ++     K
Sbjct: 3   DLSRINTWK-----SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 256 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDAGL 312
           N         +   PL  AA L   +++  L       D  + D      L  AV   G 
Sbjct: 58  NLL-------ENEFPLHQAATLEDTKIVKILLF--SGLDDSQFDDKGNTALYYAVDS-GN 107

Query: 313 YDVALDLIQHHPQLAMARDGNG-ETALHVLARK 344
                  ++ + +L M     G +T+ +     
Sbjct: 108 MQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVML 139

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 43/140 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            LH+A++KG           +  +V   +    D         T LH A        V+ 
Sbjct: 13  LLHIASIKG-----------DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L      VN              ++ L  AA +G   I ++++    ++N          
Sbjct: 62  LLQHKALVNT--------TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-----AVNIF 108

Query: 267 GATPLCMAALLGHKEMIWYL 286
           G  P+        K ++   
Sbjct: 109 GLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 23/97 (23%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
           T LHIA+       V+ L       N+        ++  G T L  A   G  K+ E+++
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNV--------KDHAGWTPLHEACNHGHLKVVELLL 63

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
                 N       G +  +PL  AA  GH +++  L
Sbjct: 64  QHKALVN-----TTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 16/123 (13%)

Query: 229 RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 284
            N  G T L  A++ G     E ++    + N     ++ + G TPL  A   GH +++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKVVE 60

Query: 285 YLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 341
            L  +  +  +          L  A  + G  D+   L+ +      A +  G   +   
Sbjct: 61  LL--LQHKALVNTTGYQNDSPLHDAAKN-GHVDIVKLLLSYGASR-NAVNIFGLRPVDYT 116

Query: 342 ARK 344
             +
Sbjct: 117 DDE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 23/155 (14%)

Query: 200 TALHIAAGARRTLFVQEL-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 252
            ++H  A       ++E        VN          ++ G T L +A+  G  +    +
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNK--------PDERGFTPLIWASAFGEIETVRFL 55

Query: 253 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVID 309
           +    + P I   +  + L +A+  G+ +++  L  + ++ D+   D      LL AV  
Sbjct: 56  LEWGAD-PHILAKERESALSLASTGGYTDIVGLL--LERDVDINIYDWNGGTPLLYAVRG 112

Query: 310 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                    L+     L      +G T + +    
Sbjct: 113 -NHVKCVEALLARGADLT-TEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 223
           PL  A+  G+ +  R       +P  +    ++ +++AL +A+    T  V  L+     
Sbjct: 39  PLIWASAFGEIETVRFLLEWGADPHIL----AKERESALSLASTGGYTDIVGLLL----- 89

Query: 224 E---DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 280
           E   D+ + +  G T L +A      K  E ++ +  +  +   + G TP+ +A  LG++
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYR 148

Query: 281 EMIWYL 286
           ++   +
Sbjct: 149 KVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.6 bits (125), Expect = 8e-08
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 292
            + ++   A  G     +  + K   L +    +G TPL  A+  G  E + +L  +   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--LEWG 59

Query: 293 EDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
            D     +     L +A    G  D+   L++    +    D NG T L    R 
Sbjct: 60  ADPHILAKERESALSLAS-TGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 29/117 (24%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            L LA+  G             + V + + R+ D         T L  A        V+ 
Sbjct: 72  ALSLASTGG-----------YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 217 LVNLMTPE---DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
           L+         DL      G T +  A   G  K+ +V+ N   +L        A P
Sbjct: 121 LL-----ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL-FQSNLVPADP 171

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 38/197 (19%), Positives = 54/197 (27%), Gaps = 76/197 (38%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR----NQD----TALHIAAGARRTLFVQEL 217
            L  AA  G  D  R             ++       D    + LH+AA        + L
Sbjct: 5   KLLEAARAGQDDEVRIL-----------MANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 218 ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKG 267
                  +         R KV  T L  AA  G   I EV++    + N      +    
Sbjct: 54  LRAGVSRD--------ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-----AKDMLK 100

Query: 268 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA 327
            T L  A    H+E+                  +ELL   I  G  DV            
Sbjct: 101 MTALHWATEHNHQEV------------------VELL---IKYGA-DV------------ 126

Query: 328 MARDGNGETALHVLARK 344
             +    +TA  +    
Sbjct: 127 HTQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 43/140 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PLHLAA  G           +     V +              T LH+AA       V+ 
Sbjct: 37  PLHLAAQYG-----------HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L      VN         ++ +  TAL +A      ++ E+++    + +      +   
Sbjct: 86  LLKHGADVNA--------KDMLKMTALHWATEHNHQEVVELLIKYGADVH-----TQSKF 132

Query: 267 GATPLCMAALLGHKEMIWYL 286
             T   ++   G++++   L
Sbjct: 133 CKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 46.2 bits (111), Expect = 4e-06
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 233 GNTALCFAAVSGVTKIAEVM------VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
               L  AA +G      ++         +          G +PL +AA  GH      L
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVL 53

Query: 287 YSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 343
                        +++   L +A  + G  ++   L++H   +  A+D    TALH    
Sbjct: 54  LR--AGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVN-AKDMLKMTALHWATE 109

Query: 344 K 344
            
Sbjct: 110 H 110

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.4 bits (127), Expect = 4e-08
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 30/161 (18%)

Query: 197 NQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 250
           +    L  AA A R   V+ L      VN          +  G T L  AA +G  +I E
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNA--------EDASGWTPLHLAAFNGHLEIVE 64

Query: 251 VMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---L 303
           V++    + N        + G TPL +AAL GH E++  L  +    D+   D      L
Sbjct: 65  VLLKNGADVN-----AVDHAGMTPLRLAALFGHLEIVEVL--LKNGADVNANDMEGHTPL 117

Query: 304 LVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
            +A +  G  ++   L+++   +  A+D  G+TA  +    
Sbjct: 118 HLAAMF-GHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDN 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.8 bits (123), Expect = 2e-07
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 43/143 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 216
           PLHLAA  G           + E V V +              T L +AA       V+ 
Sbjct: 50  PLHLAAFNG-----------HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 266
           L      VN          +  G+T L  AA+ G  +I EV++    + N      +   
Sbjct: 99  LLKNGADVNA--------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-----AQDKF 145

Query: 267 GATPLCMAALLGHKEMIWYLYSV 289
           G T   ++   G++++   L  +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.3 bits (119), Expect = 5e-07
 Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 29/135 (21%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
            L  AA  G  D  R       +  A       +  T LH+AA       V+ L      
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAE----DASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 273
           VN          +  G T L  AA+ G  +I EV++    + N         +G TPL +
Sbjct: 73  VN--------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-----ANDMEGHTPLHL 119

Query: 274 AALLGHKEMIWYLYS 288
           AA+ GH E++  L  
Sbjct: 120 AAMFGHLEIVEVLLK 134

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/194 (12%), Positives = 47/194 (24%), Gaps = 39/194 (20%)

Query: 159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV 218
           N  + Y  +  AA+ G ++     F    E    + S  +   L+            ++ 
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 219 NLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL------PSIRGNKGATP 270
             +  +  D+  R K G T        G   I        +         +         
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG-TTELCKIFLEKGADITALYKPYKIV 117

Query: 271 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 330
           +         +               E + I L   +       +              +
Sbjct: 118 VFKNIFNYFVD---------------ENEMIPLYKLIFSQSGLQLL------------IK 150

Query: 331 DGNGETALHVLARK 344
           D  G TAL  + R 
Sbjct: 151 DKWGLTALEFVKRC 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 18/149 (12%)

Query: 164 YAPLHLAALKGDWDFARNFF---NLNPEAVCVRISRNQDTALHIAA--GARRTLFVQELV 218
           Y  L     +  +  +  F      + ++     ++   T        G        EL 
Sbjct: 43  YDVLRNNNDEARYKISM-FLINKGADIKSR----TKEGTTLFFPLFQGGGNDITGTTELC 97

Query: 219 NLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS------IRGNKGATP 270
            +   +  D+    K     +     +      E++               I+   G T 
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157

Query: 271 LCMAALLGHKEMIWYLYSVTKEEDLKEED 299
           L           +  +    K+ +LKE  
Sbjct: 158 LEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 72/195 (36%)

Query: 166 PLHLAALKGDWDFARNFFNL---NPEAVCVRISRNQDTALHIAA-GARRTLFVQEL---- 217
            L  AA +GD    R   +    +P+A+    +R   TAL +   G+       EL    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDAL----NRFGKTALQVMMFGSTAI--ALELLKQG 58

Query: 218 --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 271
              N+        ++  G + +  AA +G     +V+V    + N     +    GA P+
Sbjct: 59  ASPNV--------QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-----VPDGTGALPI 105

Query: 272 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV--AVIDAGLYDVALDLIQHHPQLAMA 329
            +A   GH  +                  +  L   + +                     
Sbjct: 106 HLAVQEGHTAV------------------VSFLAAESDLH-------------------R 128

Query: 330 RDGNGETALHVLARK 344
           RD  G T L +  ++
Sbjct: 129 RDARGLTPLELALQR 143

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 43/139 (30%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 216
            L +             F  +       + +            + +H AA       ++ 
Sbjct: 39  ALQVMM-----------FG-STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86

Query: 217 L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV---NKNRELPSIRGNKG 267
           L      VN+         +  G   +  A   G T +   +    + +      R  +G
Sbjct: 87  LVEHGADVNV--------PDGTGALPIHLAVQEGHTAVVSFLAAESDLH-----RRDARG 133

Query: 268 ATPLCMAALLGHKEMIWYL 286
            TPL +A   G ++++  L
Sbjct: 134 LTPLELALQRGAQDLVDIL 152

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 29/136 (21%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 217
           PLHLAA  G  +  +       +  A      +N  T LH+AA       V+ L      
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 273
           VN         ++K G T L  AA +G  ++ ++++    + N      +   G TPL +
Sbjct: 61  VNA--------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHL 107

Query: 274 AALLGHKEMIWYLYSV 289
           AA  GH E++  L   
Sbjct: 108 AARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 233 GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
           G T L  AA +G  ++ ++++    + N      +   G TPL +AA  GH E++  L  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 289 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
                D+  +D+     L +A  + G  +V   L++    +  A+D NG T LH+ AR 
Sbjct: 57  --AGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.4 bits (109), Expect = 5e-06
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 23/100 (23%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
           T LH+AA       V+ L      VN         ++K G T L  AA +G  ++ ++++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNA--------KDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
               + N      +   G TPL +AA  GH E++  L   
Sbjct: 56  EAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 4e-07
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 37/139 (26%)

Query: 166 PLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL-- 217
            L  AA  G  D  R       ++N        ++++   T L++A        V+ L  
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN--------AKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 218 ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGAT 269
               VN          + +G T L  AA  G  +IAEV++    + N      +   G T
Sbjct: 69  NGADVNA--------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-----AQDKFGKT 115

Query: 270 PLCMAALLGHKEMIWYLYS 288
              ++   G++++   L  
Sbjct: 116 AFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.8 bits (110), Expect = 5e-06
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 23/99 (23%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
             L  AA A +   V+ L      VN         +++ G T L  A   G  +I EV++
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNA--------KDEYGLTPLYLATAHGHLEIVEVLL 67

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
               + N          G TPL +AA +GH E+   L  
Sbjct: 68  KNGADVN-----AVDAIGFTPLHLAAFIGHLEIAEVLLK 101

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 24/123 (19%)

Query: 233 GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
               L  AA +G      +++    + N      +   G TPL +A   GH E++  L  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 289 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQH----HPQLAMARDGNGETALHVL 341
                D+   D I    L +A    G  ++A  L++H    +     A+D  G+TA  + 
Sbjct: 69  --NGADVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGADVN-----AQDKFGKTAFDIS 120

Query: 342 ARK 344
              
Sbjct: 121 IGN 123

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 28/211 (13%), Positives = 45/211 (21%), Gaps = 57/211 (27%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA---------------GARR 210
              LAA  G          L P      I      A   AA                   
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 211 T---------------LFVQELVNLMTPEDLALRN---------------KVGNTALCFA 240
                            F+   VN +     A +                  G   L   
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285

Query: 241 AVSGVTKIAEVMVNKNRELPSIRG--------NKGATPLCMAALLGHKEMIWYLYSVTKE 292
                  + +  +     +P I+               L +A  LG++     L  ++  
Sbjct: 286 IRRNDEVLLDD-IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL--LSIP 342

Query: 293 EDLKEEDRIELLVAVIDAGLYDVALDLIQHH 323
             L         +     G  D+    ++HH
Sbjct: 343 SVLALTKANNYYINETG-GRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 38/205 (18%), Positives = 56/205 (27%), Gaps = 32/205 (15%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
              LAA  G          L P  +   I      A  +AA       +  L  L   E 
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190

Query: 226 LALRNKVGNTALCFAAVSG----VTKI-----AEVM-------------VNKNRELPSIR 263
            A+       A  +AAV      V          +              VN        R
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 250

Query: 264 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 323
             +      ++   G  ++      VTK E L+    +  L+   D  L D    L+   
Sbjct: 251 LKEMHDAFKLSNPDGVFDL------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 324 PQLAMA----RDGNGETALHVLARK 344
              A+A      G+    L +  R 
Sbjct: 305 GIKALAPTATIPGDANELLRLALRL 329

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 10/155 (6%)

Query: 197 NQDTALHIAA--GARRTL-FVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
             +    +AA  G    L  +  L+   + E + +       A   AA +G   +   + 
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLT--SDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148

Query: 254 NKNREL-PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE---DLKEEDRIELLVAVID 309
                   ++   +      +AA  GH  ++  L  +   E    ++ E+      A + 
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208

Query: 310 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
            G ++V   L+     LA A + +           
Sbjct: 209 RGHHNVINFLLDCPVMLAYA-EIHEFEYGEKYVNP 242

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 8e-07
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
           +K GNT L  AA +G  +  + ++    + N      R   G TPL +AA  GH E++  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-----ARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 286 LYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 339
           L +  K  D+    +       +A  + G +++   L      +  AR        H
Sbjct: 61  LLA--KGADVNARSKDGNTPEHLAKKN-GHHEIVKLLDAKGADVN-ARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.0 bits (113), Expect = 9e-07
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 23/105 (21%)

Query: 195 SRNQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKI 248
           S++ +T LH AA       V++L      VN         R+K GNT L  AA +G  +I
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA--------RSKDGNTPLHLAAKNGHAEI 57

Query: 249 AEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
            ++++    + N      R   G TP  +A   GH E++  L + 
Sbjct: 58  VKLLLAKGADVN-----ARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 229 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
                +  L  AA  G  +    ++    + P+     G  P+ +   +G  ++   L  
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMM-MGSAQVAELL-- 63

Query: 289 VTKEEDLKEEDRIELLVAVIDA---GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           +    +    D   L   V DA   G  D  + L +   +L    D  G   + +   +
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 43/140 (30%)

Query: 166 PLHLAALKGDWDFARNFFNL-----NPEAVCVRISRNQDTALHIAA-------------G 207
            L  AA +G  +  R    L     +P A+    +R     + +               G
Sbjct: 15  GLATAAARGQVETVRQ---LLEAGADPNAL----NRFGRRPIQVMMMGSAQVAELLLLHG 67

Query: 208 ARRTLFVQELVNLMTPEDLALRNKVGNT-ALCFAAVSGVTKIAEVMVNKNRELPSIRGNK 266
           A                +    +    T  +  AA  G      V+         +    
Sbjct: 68  A----------------EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAW 110

Query: 267 GATPLCMAALLGHKEMIWYL 286
           G  P+ +A   GH+++  YL
Sbjct: 111 GRLPVDLAEEQGHRDIARYL 130

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 23/100 (23%)

Query: 200 TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
           T LH+AA       V+ L      VN         ++K G T L  AA +G  ++ ++++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNA--------KDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 254 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
               + N      +   G TPL +AA  GH E++  L   
Sbjct: 56  EAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.6 bits (99), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 233 GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 288
           G T L  AA +G  ++ ++++    + N      +   G TPL +AA  GH E++  L  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 289 V 289
            
Sbjct: 57  A 57

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG---VTKIAEVMVNKN 256
           T LH          V+ LV   +  +    + +G + L  A  S     +   E +++  
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 257 RELPSIRGNKGATPLCMAALLGHKE-----MIWYLYSVTKEEDLKEEDRIELLVAVIDAG 311
                +  +   T L    +            +YL  +      K+   I+      ++ 
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 312 LYDVALDLIQHHPQLAM----------ARDGNGETALHVLARK 344
             D   +      +             A+D NG+T L++ AR 
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 36/262 (13%)

Query: 229 RNKVGNTALCFAAVSGVTK-IAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY 287
                N      +   + + + +   N    L       G TPL     + + E++ +L 
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL- 150

Query: 288 SVTKEEDLKEEDRIE---LLVAVIDAGLYD--VALDLIQHHPQLAMARDGNGETALHVLA 342
            V    +    D +    L+ AV     YD      L+ +     +  D    T LH + 
Sbjct: 151 -VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209

Query: 343 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL 402
                       G      Y    +  ++   ++  Q   +     E+    +D      
Sbjct: 210 IT------SGMTGCSAAAKY---YLDILMG-WIVKKQNRPIQSGTNEKESKPNDKNGERK 259

Query: 403 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL 462
                          ++   + L  +  N++   D +  +  +IA       I + + + 
Sbjct: 260 D--------------SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 463 GAHKDLIASYKDENNNNMLHLA 484
           GA   +     +++    +   
Sbjct: 306 GADPFI----ANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 166 PLHLAAL----KGDWDFARNF------FNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
            LH   +     G    A+ +      + +  +   ++   N+  +        R   + 
Sbjct: 204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263

Query: 216 ELVNLMTPEDLAL--RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 273
           E ++L       L  ++  G+T L  AA  G   I + +++   + P I    G  P+  
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDF 322

Query: 274 AA 275
            A
Sbjct: 323 GA 324

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 23/101 (22%)

Query: 199 DTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 252
           D     A        V++       VN           + G   L +AA  G  +I E +
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNR--------TLEGGRKPLHYAADCGQLEILEFL 59

Query: 253 V----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
           +    + N            TPL  A   GH   +  L S 
Sbjct: 60  LLKGADIN-----APDKHHITPLLSAVYEGHVSCVKLLLSK 95

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 33/132 (25%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQD--TALHIAAGARRTLFVQEL---- 217
               A   GD D  +++     +           +     LH AA   +   ++ L    
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNR------TLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 218 --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 271
             +N          +K   T L  A   G     ++++    +K      ++G  G T  
Sbjct: 64  ADINA--------PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-----VKGPDGLTAF 110

Query: 272 CMAALLGHKEMI 283
                   K ++
Sbjct: 111 EATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
             + +    +A  +G     +  V    + N          G  PL  AA  G  E++ +
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEILEF 58

Query: 286 LYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
           L    K  D+   D+     LL AV + G       L+         +  +G TA   
Sbjct: 59  LLL--KGADINAPDKHHITPLLSAVYE-GHVSCVKLLLSKGADKT-VKGPDGLTAFEA 112

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 289
            +     L  AA  G  +    ++      P+   + G  P+ +  + G   +   L  +
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELL--L 64

Query: 290 TKEEDLKEEDRIELLVAVIDA---GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
               +    D   L   V DA   G  D  + L +   +L   RD  G   + +    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEEL 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAA-GARRTLFVQELVNLMT 222
            L  AA +G  +  R       NP A     +      + +   G+ R    + L+    
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMMMGSARV--AELLLLHGA 68

Query: 223 PEDLALRNKVGNT-ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 281
             +    +    T  +  AA  G      V+         +R   G  P+ +A  LGH++
Sbjct: 69  --EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRD 125

Query: 282 MIWYL 286
           +  YL
Sbjct: 126 VARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 29/156 (18%)

Query: 199 DTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 252
              L  AA   R   V+ L       N          N  G   +      G  ++AE++
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPN--------APNSYGRRPIQVMM-MGSARVAELL 63

Query: 253 VNKNRELPSIRGNKGAT-PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVI 308
           +    E P+       T P+  AA  G  + +  L        L   D      + +A  
Sbjct: 64  LLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVL--HRAGARLDVRDAWGRLPVDLAEE 120

Query: 309 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
             G  DVA  L              G     + A +
Sbjct: 121 L-GHRDVARYLRAAA---G---GTRGSNHARIDAAE 149

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 184 NLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMT-PEDLALRNKVGNTALCFAAV 242
           +L  +          +TALH+A  +     +  +  L+    +L  +   G+TAL +  +
Sbjct: 155 DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214

Query: 243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 281
           +   +  ++++ + +    I    G TPL +A  L H+ 
Sbjct: 215 TDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEH 252

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 230 NKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
                  L  AA +G      +++    +        +   G+TPL +AA  GH E++  
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVA-----AKDKNGSTPLHLAARNGHLEVVKL 75

Query: 286 LYS 288
           L  
Sbjct: 76  LLE 78

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 184 NLNPEAVCVRISRNQDTALHIA--AGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 241
           +             ++  LH+A     + +L + + + +     L  +   GNTAL +AA
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI-IQNGGHLDAKAADGNTALHYAA 234

Query: 242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 281
           +       ++++ K R L       G T L +A    HKE
Sbjct: 235 LYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKE 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	715
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-53  Score=467.36  Aligned_cols=363  Identities=19%  Similarity=0.198  Sum_probs=187.1

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCh
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT  235 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~T  235 (715)
                      ++..+..|+||||+||..|+.++|++|++.+.+ ++.. +..|.||||+|+..|+.++|++|++  .|++++.+|.+|+|
T Consensus         7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t   82 (437)
T 1n11_A            7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVS-NVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQT   82 (437)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHHTTCC-SCCS-SSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSCC
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCC-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCCCCCCC
Confidence            344445555555555555555555555544322 2222 4455555555555555555555555  45555555555555


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhH
Q 005095          236 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV  315 (715)
Q Consensus       236 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~i  315 (715)
                      |||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++.+..+..|.||||.|+..|+.++
T Consensus        83 ~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           83 PLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            5555555555555555555555543 445555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCC--cchhccCCchhHHHHH----HHHHHHHH
Q 005095          316 ALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRAILDPKLMHLQAL----ELVKRLWE  389 (715)
Q Consensus       316 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~lh~a~~----~~~~~l~~  389 (715)
                      +++|++++++. +..+..|.||||+|+..++       .++++.|+....  +..+..+.||+|.|+.    ++++.|++
T Consensus       162 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  233 (437)
T 1n11_A          162 AELLLERDAHP-NAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ  233 (437)
T ss_dssp             HHHHHHTTCCT-TCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCCCC-CCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            55555555543 4445555555555555443       445555543322  2233344555555542    34444433


Q ss_pred             HHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhh
Q 005095          390 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLI  469 (715)
Q Consensus       390 ~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l  469 (715)
                      .     +.+++..+..|.||||+|+..|+.+++++|++++++ .+.+|..|+||||+|+..|+.+++++|+++|++++  
T Consensus       234 ~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--  305 (437)
T 1n11_A          234 Y-----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--  305 (437)
T ss_dssp             T-----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--
T ss_pred             c-----CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--
Confidence            2     333444444555555555555555555555555555 44445555555555555555555555555555544  


Q ss_pred             hcccCCCCchHHHHhhhhCCCCc--cccCCCc-----------hhhhHHHhhhHHHHHHhhc-chhHhhhhcCCCCchhh
Q 005095          470 ASYKDENNNNMLHLAGKLAPPDR--LKIDSGA-----------ALQLRRELHWFKEIEKVVQ-PSYREAKNSEGRTPHIL  535 (715)
Q Consensus       470 ~~~~d~~G~TpLh~A~~~~~~~~--l~l~~ga-----------~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~G~Tpl~~  535 (715)
                        .+|..|+||||+|+..|+.+.  ++++.|+           +++.....+..+.++.+++ +++++.+|.+|+||+++
T Consensus       306 --~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~  383 (437)
T 1n11_A          306 --ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  383 (437)
T ss_dssp             --CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             --CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence              245555555555555554442  2222222           2222223333556666665 66788999999999999


Q ss_pred             hHHHhh
Q 005095          536 FSEEHR  541 (715)
Q Consensus       536 a~~~~~  541 (715)
                      |.+...
T Consensus       384 A~~~g~  389 (437)
T 1n11_A          384 AKRLGY  389 (437)
T ss_dssp             HHHTTC
T ss_pred             HHHcCc
Confidence            987653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-51  Score=449.13  Aligned_cols=321  Identities=21%  Similarity=0.207  Sum_probs=290.4

Q ss_pred             ccccCCCCCCcccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 005095          144 VSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP  223 (715)
Q Consensus       144 ~~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g  223 (715)
                      .++.+.|+   +++..+.+|+||||+|+..|+.+++++|++.+.+ ++. .+..|.||||+|+..|+.++|++|++  .+
T Consensus        64 ~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~  136 (437)
T 1n11_A           64 KYLLQNKA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNL-ATTAGHTPLHIAAREGHVETVLALLE--KE  136 (437)
T ss_dssp             HHHHHHTC---CSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTC-CCTTCCCHHHHHHHHTCHHHHHHHHH--TT
T ss_pred             HHHHhCCC---CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCC-CCCCCCcHHHHHHHcCCHHHHHHHHh--CC
Confidence            33455555   5677888999999999999999999999988654 344 38899999999999999999999999  89


Q ss_pred             cccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccH
Q 005095          224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL  303 (715)
Q Consensus       224 ~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  303 (715)
                      ++++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+.+|.||
T Consensus       137 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  215 (437)
T 1n11_A          137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP  215 (437)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            9999999999999999999999999999999999986 789999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCC--cchhccCCchhHHHHH
Q 005095          304 LVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRAILDPKLMHLQAL  381 (715)
Q Consensus       304 L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~lh~a~~  381 (715)
                      ||.|+..|+.+++++|++.+++. +..+..|.||||+|+..|+       .++++.|+....  +..+..|.||+|.|+.
T Consensus       216 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  287 (437)
T 1n11_A          216 LHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGH-------AEMVALLLSKQANGNLGNKSGLTPLHLVAQ  287 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC-------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCC-------HHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999985 7889999999999999875       789999986654  5667889999999984


Q ss_pred             ----HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHH
Q 005095          382 ----ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFN  457 (715)
Q Consensus       382 ----~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~  457 (715)
                          ++++.|+++     +.+++..+..|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+.+|+.++++
T Consensus       288 ~~~~~~~~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~  361 (437)
T 1n11_A          288 EGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVT  361 (437)
T ss_dssp             HTCHHHHHHHHHH-----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhC-----CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHCChHHHHH
Confidence                677777766     667788889999999999999999999999999999 7899999999999999999999999


Q ss_pred             HHHHcCcchhhhhcccCCCCchHHHHhhhhCCC
Q 005095          458 LIYELGAHKDLIASYKDENNNNMLHLAGKLAPP  490 (715)
Q Consensus       458 ~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~  490 (715)
                      +|+++|++++.    +|.+|+||||+|++.|+.
T Consensus       362 ~Ll~~ga~~~~----~~~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          362 LLLKNGASPNE----VSSDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             HHHHTTCCSCC----CCSSSCCHHHHHHHTTCH
T ss_pred             HHHHCcCCCCC----CCCCCCCHHHHHHHcCcH
Confidence            99999999984    999999999999998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-43  Score=377.24  Aligned_cols=284  Identities=17%  Similarity=0.110  Sum_probs=242.8

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChH
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA  236 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~Tp  236 (715)
                      +..+..|.|+||.||..|+.+.++.|+...+.+++.. |..|.||||+|+..|+.++|++|++  .|++++.+|..|.||
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~   94 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVP   94 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCH
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCcH
Confidence            3345567799999999999999999998877766665 8999999999999999999999999  899999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHH--------
Q 005095          237 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI--------  308 (715)
Q Consensus       237 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~--------  308 (715)
                      ||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.+|++.|+        
T Consensus        95 L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~  173 (351)
T 3utm_A           95 LHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL  173 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence            999999999999999999999986 78999999999999999999999999999999999999999987754        


Q ss_pred             -------------HcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCch
Q 005095          309 -------------DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL  375 (715)
Q Consensus       309 -------------~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  375 (715)
                                   ..+..+.++.++...... ...+..|.||||+|+..++..                           
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~---------------------------  225 (351)
T 3utm_A          174 TYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPK---------------------------  225 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTT---------------------------
T ss_pred             HhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCcc---------------------------
Confidence                         455566666666655443 455677888888888775310                           


Q ss_pred             hHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHH
Q 005095          376 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI  455 (715)
Q Consensus       376 lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~i  455 (715)
                          ..++++.|++.     +.+++.++..|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++
T Consensus       226 ----~~~~~~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~  295 (351)
T 3utm_A          226 ----RKQVAELLLRK-----GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQT  295 (351)
T ss_dssp             ----HHHHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ----HHHHHHHHHHc-----CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHH
Confidence                02555666554     667778888899999999999999999999999998 78889999999999999999999


Q ss_pred             HHHHHHcCcchhhhhcccCCCCchHHHHhhh
Q 005095          456 FNLIYELGAHKDLIASYKDENNNNMLHLAGK  486 (715)
Q Consensus       456 v~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~  486 (715)
                      +++|+++|++++.    +|..|+||+|+|..
T Consensus       296 v~~Ll~~gad~~~----~~~~g~tal~~a~~  322 (351)
T 3utm_A          296 CRLLLSYGSDPSI----ISLQGFTAAQMGNE  322 (351)
T ss_dssp             HHHHHHTTCCTTC----CCTTSCCHHHHSCH
T ss_pred             HHHHHHcCCCCCC----cCCCCCChhhhhhH
Confidence            9999999999884    89999999999843

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7e-44  Score=379.20  Aligned_cols=292  Identities=20%  Similarity=0.237  Sum_probs=249.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHH
Q 005095          161 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA  240 (715)
Q Consensus       161 ~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~A  240 (715)
                      .+|.||||.|++.|+.++|++||+.+. +++.+.+..|+||||+||..|+.++|++||+  +|++++.++..+.+|++.+
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCchhHHH
Confidence            346799999999999999999998865 4555534569999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc----------ccccccHHHHHHHc
Q 005095          241 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDA  310 (715)
Q Consensus       241 a~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~----------~~~g~t~L~~A~~~  310 (715)
                      +..+..++++.+++.+++++ .+|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            99999999999999999986 79999999999999999999999999999988754          44689999999999


Q ss_pred             CChhHHHHHHhh-CcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHH
Q 005095          311 GLYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  389 (715)
Q Consensus       311 g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~  389 (715)
                      |+.+++++|+++ |+++ +.+|..|.||||.++..+...   .                           ..++++.|++
T Consensus       179 g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~---~---------------------------~~~i~~lLl~  227 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDS---D---------------------------VEAITHLLLD  227 (337)
T ss_dssp             TCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTT---T---------------------------HHHHHHHHHH
T ss_pred             CCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcc---c---------------------------HHHHHHHHHH
Confidence            999999999975 6664 899999999999988654310   0                           0134455554


Q ss_pred             HHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHh-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhh
Q 005095          390 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM-YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       390 ~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~-~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                      +     +++++.++..|.||||+|++.|+.++++.|++. +++ ++.+|.+|+||||+|+++|+.++|++|+++|++++.
T Consensus       228 ~-----gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          228 H-----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             T-----TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             C-----CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            4     677888888999999999999999999999986 566 888999999999999999999999999999988762


Q ss_pred             hhcccCCCCchHHHHhhhhCCCC--ccccCCCchhh
Q 005095          469 IASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQ  502 (715)
Q Consensus       469 l~~~~d~~G~TpLh~A~~~~~~~--~l~l~~ga~~~  502 (715)
                               .||||+|++.|+.+  ++++++||+++
T Consensus       302 ---------~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          302 ---------GDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             ---------CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             ---------CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence                     35999999998765  34555666543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-43  Score=364.19  Aligned_cols=266  Identities=21%  Similarity=0.240  Sum_probs=241.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHH
Q 005095          162 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA  241 (715)
Q Consensus       162 ~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa  241 (715)
                      +|.||||.|+..|+.+++++|++.+.. ++...+..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHH
Confidence            477999999999999999999987654 444447889999999999999999999999  89999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc----------ccccccHHHHHHHcC
Q 005095          242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDAG  311 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~----------~~~g~t~L~~A~~~g  311 (715)
                      ..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||.|+..|
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            9999999999999999986 78999999999999999999999999999999887          778999999999999


Q ss_pred             ChhHHHHHHhh-CcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHH
Q 005095          312 LYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQ  390 (715)
Q Consensus       312 ~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~  390 (715)
                      +.+++++|++. +.++ +.+|..|+||||+|+..++...                              ..++++.|++.
T Consensus       160 ~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~------------------------------~~~i~~~Ll~~  208 (285)
T 1wdy_A          160 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD------------------------------VEAITHLLLDH  208 (285)
T ss_dssp             CHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTT------------------------------HHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccch------------------------------HHHHHHHHHHc
Confidence            99999999998 6664 8899999999999999875210                              12556666654


Q ss_pred             HHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHH-hCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhh
Q 005095          391 VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       391 ~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~-~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                           +.+++.++..|.||||+|++.|+.+++++|++ .|++ ++.+|..|+||||+|++.|+.+++++|+++|++++.
T Consensus       209 -----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          209 -----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             -----TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             -----CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence                 67788888999999999999999999999999 7888 889999999999999999999999999999999884

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.5e-42  Score=369.94  Aligned_cols=307  Identities=15%  Similarity=0.095  Sum_probs=254.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      +..+.|+||.||+.|+.+.|+.|+.. .+.+++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   98 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence            56788999999999999999999985 689999999999999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++. +..+..|.||+++|+..+.       .
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~-------~  170 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPEL-------R  170 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHH-------H
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhh-------H
Confidence            9999999999999999999999999999999999999999999999999985 7889999999999886532       2


Q ss_pred             hhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHc---CCHHHHHHHHHhCCC
Q 005095          355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVEL---GNVEFLMVLIQMYPN  431 (715)
Q Consensus       355 ~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~---g~~eiv~~Ll~~~~d  431 (715)
                      +.+.....          ..++..++.......+...+... ......+..|.||||+|+..   +..+++++|+++|++
T Consensus       171 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~  239 (351)
T 3utm_A          171 ERLTYEFK----------GHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN  239 (351)
T ss_dssp             HHHHHHHH----------HHHHHHHHHTTCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred             HHHHhhhc----------ccHHHHHHHhccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence            22222111          11222222211111122222222 22233567889999999999   568999999999999


Q ss_pred             CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHH
Q 005095          432 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFK  511 (715)
Q Consensus       432 ~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~  511 (715)
                       ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|++.|+.+                    
T Consensus       240 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~----~d~~g~t~L~~A~~~~~~~--------------------  294 (351)
T 3utm_A          240 -VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAALAGHLQ--------------------  294 (351)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHTCHH--------------------
T ss_pred             -cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCcHH--------------------
Confidence             789999999999999999999999999999999984    9999999999999998743                    


Q ss_pred             HHHHhhc-chhHhhhhcCCCCchhhhHHHhhHhhhhh
Q 005095          512 EIEKVVQ-PSYREAKNSEGRTPHILFSEEHRRLVREG  547 (715)
Q Consensus       512 ~v~~ll~-~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~  547 (715)
                      .++.+++ +++++.+|.+|+||+++|.+...+.+.+.
T Consensus       295 ~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~  331 (351)
T 3utm_A          295 TCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES  331 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhc
Confidence            4445554 56779999999999999977766555443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-41  Score=347.40  Aligned_cols=249  Identities=17%  Similarity=0.178  Sum_probs=229.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      .+|.||||.|++.|+.++|++|++  .|++++.+ +..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            357899999999999999999999  89999988 7889999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceec----------CCCCCCHHHHHHhC
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR----------DGNGETALHVLARK  344 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~  344 (715)
                      +..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++++++. +..          +..|.||||+|+..
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999886 444          78899999999998


Q ss_pred             CCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCC----HH
Q 005095          345 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VE  420 (715)
Q Consensus       345 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~----~e  420 (715)
                      |+                                  .+++++|++.    .+.+++..+..|.||||+|+..|+    .+
T Consensus       159 ~~----------------------------------~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  200 (285)
T 1wdy_A          159 GH----------------------------------VEVLKILLDE----MGADVNACDNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             TC----------------------------------HHHHHHHHHT----SCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred             CC----------------------------------HHHHHHHHHh----cCCCCCccCCCCCCHHHHHHHccccchHHH
Confidence            76                                  3666666553    366778888999999999999999    99


Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH-cCcchhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          421 FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       421 iv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      ++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.    +|..|+||||+|++.++.+
T Consensus       201 i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~----~~~~g~t~l~~A~~~~~~~  267 (285)
T 1wdy_A          201 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC----CCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc----cCCCCCcHHHHHHHcCcHH
Confidence            99999999999 78999999999999999999999999999 8999884    9999999999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=351.95  Aligned_cols=181  Identities=13%  Similarity=0.065  Sum_probs=134.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCcc----------chhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPE----------AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR  229 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~----------~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~  229 (715)
                      ...|.|+||+|+..|+.+.+..++...+.          ..+ ..|.+|+||||+||..|+.++|++|++  .|++++.+
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~   88 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLM-GDAVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNII   88 (285)
T ss_dssp             ------------------------------CCSEECCCCTTC-SSSCCSCCHHHHHHHTTCHHHHHHHHH--TTCCSCEE
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCccc-CCCccCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCc
Confidence            34588999999999998888776654322          222 348899999999999999999999999  89999999


Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHH
Q 005095          230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID  309 (715)
Q Consensus       230 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  309 (715)
                      |.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+.
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~  166 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR  166 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence            9999999999999999999999999999986 789999999999999999999999999999988654 49999999999


Q ss_pred             cCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          310 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       310 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      .|+.+++++|++.++++ +.+|.+|+||||+|+..++
T Consensus       167 ~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ  202 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            99999999999998875 6666666666666665543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-41  Score=367.23  Aligned_cols=261  Identities=18%  Similarity=0.180  Sum_probs=218.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHH--------hcCCCcccccc
Q 005095          158 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV--------NLMTPEDLALR  229 (715)
Q Consensus       158 ~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~g~~i~~~  229 (715)
                      ..+..|+||||.||..|+ +++++|+..   .++...+..|+||||+||..|+.++|++|+        +  .|+++|.+
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~--~ga~vn~~  162 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVNAM  162 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH--TCCCTTCC
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCCCCcCC
Confidence            457789999999999665 788877643   344442378999999999999998888887        6  89999999


Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCCccccccccHHHH
Q 005095          230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT---KEEDLKEEDRIELLVA  306 (715)
Q Consensus       230 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g---a~~~~~~~~g~t~L~~  306 (715)
                      |..|.||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|++++   ++++..+..|.||||+
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            9999999999999999999999999999986 78999999999999999999999999998   8999999999999999


Q ss_pred             HHHcC---ChhHHHHHHhhCccccee--------cCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCch
Q 005095          307 VIDAG---LYDVALDLIQHHPQLAMA--------RDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL  375 (715)
Q Consensus       307 A~~~g---~~~iv~~Ll~~~~~~~~~--------~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  375 (715)
                      |+..+   +.+++++|+++++++ +.        .|..|+||||+|+..|+                             
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~-----------------------------  291 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSN-----------------------------  291 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCC-----------------------------
T ss_pred             HHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCC-----------------------------
Confidence            99998   899999999999886 33        56678888888888776                             


Q ss_pred             hHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHH
Q 005095          376 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI  455 (715)
Q Consensus       376 lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~i  455 (715)
                           .+++++|++..    +.+++.+|..|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+.+|+.++
T Consensus       292 -----~~~v~~Ll~~~----~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~i  361 (373)
T 2fo1_E          292 -----MPIVKYLVGEK----GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNI  361 (373)
T ss_dssp             -----HHHHHHHHHHS----CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             -----HHHHHHHHHhc----CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHH
Confidence                 36666666542    366777778888888888888888888888888888 67778888888888888888888


Q ss_pred             HHHHHHcCcc
Q 005095          456 FNLIYELGAH  465 (715)
Q Consensus       456 v~~Ll~~ga~  465 (715)
                      +++|++++++
T Consensus       362 v~~Ll~~~a~  371 (373)
T 2fo1_E          362 VDIFDRCRPE  371 (373)
T ss_dssp             HHHHHTTC--
T ss_pred             HHHHHhcCcc
Confidence            8888887765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.3e-40  Score=351.97  Aligned_cols=275  Identities=21%  Similarity=0.215  Sum_probs=237.3

Q ss_pred             ccccccCCCCCCcccccCC-CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 005095          142 PAVSLSQPGAVSGGVERNC-FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNL  220 (715)
Q Consensus       142 ~~~~l~~~G~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~  220 (715)
                      .+..+++.|+   ++|..+ ..|+||||+||..|+.++|++||+.+.. ++.+ +..+.+|+|.++..++.+++..+++ 
T Consensus        40 ~V~~LL~~Ga---dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  113 (337)
T 4g8k_A           40 LVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLR-KKNGATPFILAAIAGSVKLLKLFLS-  113 (337)
T ss_dssp             HHHHHHHHTC---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC-CTTCCCHHHHHHHHTCHHHHHHHHT-
T ss_pred             HHHHHHHCCC---CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhh-ccCCCchhHHHHhcccchhhHHhhh-
Confidence            3444666676   455554 4589999999999999999999987654 4443 8999999999999999999999999 


Q ss_pred             CCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCc---------cCCCCCCCHHHHHHHcCCHHHHHHHHh-cC
Q 005095          221 MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS---------IRGNKGATPLCMAALLGHKEMIWYLYS-VT  290 (715)
Q Consensus       221 ~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~---------~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~g  290 (715)
                       .+++++.+|..|.||||+|+..|+.+++++|+++|++++.         ..+..|.||||+|+..|+.++|++|++ .|
T Consensus       114 -~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g  192 (337)
T 4g8k_A          114 -KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  192 (337)
T ss_dssp             -TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             -ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence             8999999999999999999999999999999999998752         235579999999999999999999996 59


Q ss_pred             CCCCccccccccHHHHHHHcCC----hhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCc
Q 005095          291 KEEDLKEEDRIELLVAVIDAGL----YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG  366 (715)
Q Consensus       291 a~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~  366 (715)
                      ++++.++..|.|+++.++..+.    .+++++|+++|+++ +.+|.+|+||||+|+..++                    
T Consensus       193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~--------------------  251 (337)
T 4g8k_A          193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH--------------------  251 (337)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTC--------------------
T ss_pred             CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhh--------------------
Confidence            9999999999999998876554    35889999999996 8899999999999999986                    


Q ss_pred             chhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q 005095          367 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI  446 (715)
Q Consensus       367 ~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~  446 (715)
                                    .+.++.|++    ..+.+++.+|..|.||||+|++.|+.++|++|+++|++ ++     +.||||+
T Consensus       252 --------------~~~v~~Ll~----~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n-----~~~~L~~  307 (337)
T 4g8k_A          252 --------------LGLVQRLLE----QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TD-----CGDLVMT  307 (337)
T ss_dssp             --------------HHHHHHHHT----STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-ST-----TCCHHHH
T ss_pred             --------------hHHHHHHHH----hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CC-----CCCHHHH
Confidence                          245554443    34778899999999999999999999999999999998 43     4579999


Q ss_pred             HHHhCCHHHHHHHHHcCcchhh
Q 005095          447 AVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       447 A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                      |+++|+.++|++|+++||++|+
T Consensus       308 A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          308 ARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHcCCHHHHHHHHHCcCCCCC
Confidence            9999999999999999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.6e-41  Score=348.01  Aligned_cols=246  Identities=17%  Similarity=0.147  Sum_probs=199.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcC---------CCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCC
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLM---------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN  265 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~---------~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~  265 (715)
                      ...|.|+||+|+..|+.+.+..++...         ....++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence            468999999999999987777765521         123367789999999999999999999999999999986 7999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCC
Q 005095          266 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  345 (715)
Q Consensus       266 ~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  345 (715)
                      .|.||||+|+..|+.+++++|+++|++++.++.+|.||||+|+..|+.+++++|++.+++. + .+.+|.||||+|+..|
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRG  168 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999986 3 3556999999999988


Q ss_pred             CCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHH
Q 005095          346 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL  425 (715)
Q Consensus       346 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~L  425 (715)
                      +                                  .++++.|++.     +.+++.++..|.||||+|+..|+.+++++|
T Consensus       169 ~----------------------------------~~~v~~Ll~~-----g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          169 H----------------------------------VECVNSLIAY-----GGNIDHKISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             C----------------------------------HHHHHHHHHT-----TCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             C----------------------------------HHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            6                                  3677777765     667788889999999999999999999999


Q ss_pred             HHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhC
Q 005095          426 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA  488 (715)
Q Consensus       426 l~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~  488 (715)
                      +++|++ ++. |..|+||||+|+..++.+++++|+++|++++.    +|.+|+||||+|+...
T Consensus       210 l~~ga~-~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~  266 (285)
T 3d9h_A          210 LESGAD-VNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQA----KNAEGKRPVELVPPES  266 (285)
T ss_dssp             HHTTCC-TTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTTS
T ss_pred             HHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHhcCcc
Confidence            999999 554 89999999999999999999999999999884    9999999999999543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-41  Score=365.77  Aligned_cols=277  Identities=16%  Similarity=0.186  Sum_probs=219.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCChHHHHHHHc
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVS  243 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d-~~G~TpLh~Aa~~  243 (715)
                      ++++-+...|+.++++.++..       ..+..|.||||+|+..|+ +++++|+.    .+++.+| ..|+||||+|+..
T Consensus        68 ~~~~~~~~~g~~~~~~~~~~~-------~~~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~  135 (373)
T 2fo1_E           68 GYGNGNDFLGDFNHTNLQIPT-------EPEPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASN  135 (373)
T ss_dssp             ---------------------------------CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCT
T ss_pred             ccCCCCCcccccccccccccc-------CCCCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHC
Confidence            466778888999999877643       237889999999999665 77777744    5788888 7999999999999


Q ss_pred             CcHHHHHHHH--------hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhH
Q 005095          244 GVTKIAEVMV--------NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV  315 (715)
Q Consensus       244 g~~~iv~~Ll--------~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~i  315 (715)
                      |+.+++++|+        ++|++++ .+|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.++
T Consensus       136 g~~~~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~  214 (373)
T 2fo1_E          136 SSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM  214 (373)
T ss_dssp             TCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHH
Confidence            9998877776        8899986 789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhC---cccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHH
Q 005095          316 ALDLIQHH---PQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  392 (715)
Q Consensus       316 v~~Ll~~~---~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l  392 (715)
                      +++|++++   .+ ++..|.+|.||||+|+..+..    ..                           .++++.|++.+.
T Consensus       215 v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~----~~---------------------------~~~v~~Ll~~g~  262 (373)
T 2fo1_E          215 MVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGR----DQ---------------------------VASAKLLVEKGA  262 (373)
T ss_dssp             HHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCST----TH---------------------------HHHHHHHHHHTC
T ss_pred             HHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCc----ch---------------------------HHHHHHHHHCCC
Confidence            99999987   45 478899999999999987631    01                           366677777654


Q ss_pred             hcCc---ccccccccCCchHHHHHHHcCCHHHHHHHHHhC-CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhh
Q 005095          393 LLDD---SKIGELLRKPSRLLFTAVELGNVEFLMVLIQMY-PNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       393 ~~~~---~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~-~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                      +.+.   ...+..+..|.||||+|+..|+.++|++|++++ ++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.
T Consensus       263 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC
Confidence            4332   112346678999999999999999999999998 66 899999999999999999999999999999999984


Q ss_pred             hhcccCCCCchHHHHhhhhCCCC
Q 005095          469 IASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       469 l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                          +|..|+||||+|+..|+.+
T Consensus       342 ----~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          342 ----VDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             ----CCSSSCCHHHHHHHTTCHH
T ss_pred             ----CCCCCCCHHHHHHHcCCHH
Confidence                9999999999999998855

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.8e-41  Score=358.84  Aligned_cols=254  Identities=16%  Similarity=0.104  Sum_probs=184.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |.+|.||||+||..|+.++|++|++  .|++++.+|..|.||||+|+..|+.++|++|+++|++..   +.+|.||||+|
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L~~A   91 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHLA   91 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHHHHH
Confidence            5566666666666666666666666  566666666666666666666666666666666666432   24566666666


Q ss_pred             HHcCCHHHHHHHHhc----CCCCCc-----------------cccccccHHHHHHHcC--ChhHHHHHHhhCcccceecC
Q 005095          275 ALLGHKEMIWYLYSV----TKEEDL-----------------KEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMARD  331 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~----ga~~~~-----------------~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~d  331 (715)
                      +..|+.++|++|+++    |++++.                 .+..|.||||+|+..|  +.+++++|+++++++ +.+|
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d  170 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKD  170 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccC
Confidence            666666666666666    555554                 6666667777777766  667777777766664 5666


Q ss_pred             CCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHH
Q 005095          332 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLF  411 (715)
Q Consensus       332 ~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh  411 (715)
                      ..|+||||+|+..|+                                  .+++++|++.+....+.+++..+..|.||||
T Consensus       171 ~~g~t~L~~A~~~g~----------------------------------~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~  216 (364)
T 3ljn_A          171 KADETPLMRAMEFRN----------------------------------REALDLMMDTVPSKSSLRLDYANKQGNSHLH  216 (364)
T ss_dssp             TTSCCHHHHHHHTTC----------------------------------HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred             CCCCCHHHHHHHcCC----------------------------------HHHHHHHHhcccccccccccccCCCCCcHHH
Confidence            667777777776665                                  2555666655444444457777788899999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhh--------cccCCCCchHHHH
Q 005095          412 TAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIA--------SYKDENNNNMLHL  483 (715)
Q Consensus       412 ~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~--------~~~d~~G~TpLh~  483 (715)
                      +|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++...        ...+..|+|||+.
T Consensus       217 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  295 (364)
T 3ljn_A          217 WAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP  295 (364)
T ss_dssp             HHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh
Confidence            99999999999999999999 78999999999999999999999999999998875310        1157788999999


Q ss_pred             hhhhCC
Q 005095          484 AGKLAP  489 (715)
Q Consensus       484 A~~~~~  489 (715)
                      |+..++
T Consensus       296 aa~~~~  301 (364)
T 3ljn_A          296 AAADPS  301 (364)
T ss_dssp             SSCCHH
T ss_pred             hhhccC
Confidence            987764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.5e-40  Score=335.03  Aligned_cols=233  Identities=21%  Similarity=0.222  Sum_probs=161.7

Q ss_pred             ccccCCCCCChHHHHHHHcC-------------CHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005095          155 GVERNCFTSYAPLHLAALKG-------------DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM  221 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~  221 (715)
                      ++|.+|.+|+||||+|+..|             +.+++++|++.++..... .|..|.||||+|+..|+.++|++|++  
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~--   78 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLE--   78 (253)
T ss_dssp             --------------------------------------------------C-CCTTSCCHHHHHHHTTCHHHHHHHHH--
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHH--
Confidence            46778899999999999987             788888888776654433 37888888888888888888888888  


Q ss_pred             CCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccc
Q 005095          222 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI  301 (715)
Q Consensus       222 ~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  301 (715)
                      .|++++.+|..|+||||+|+..|+.+++++|+++++.....++..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence            78888888888888888888888888888888888733347788888888888888888888888888888888888888


Q ss_pred             cHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHH
Q 005095          302 ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL  381 (715)
Q Consensus       302 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~  381 (715)
                      ||||+|+..|+.+++++|+++|+++ +.+|.                                                 
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-------------------------------------------------  188 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANK-DMQNN-------------------------------------------------  188 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-------------------------------------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-------------------------------------------------
Confidence            8888888888888888888887764 44443                                                 


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 005095          382 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  461 (715)
Q Consensus       382 ~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  461 (715)
                                             .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.+++++|.+
T Consensus       189 -----------------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          189 -----------------------REETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             -----------------------TSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             -----------------------CCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                   455666666667888999999999999 78889999999999999999999999987


Q ss_pred             cCc
Q 005095          462 LGA  464 (715)
Q Consensus       462 ~ga  464 (715)
                      ...
T Consensus       245 ~~~  247 (253)
T 1yyh_A          245 EHH  247 (253)
T ss_dssp             ---
T ss_pred             Hhh
Confidence            543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.4e-40  Score=354.66  Aligned_cols=267  Identities=17%  Similarity=0.101  Sum_probs=233.6

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      ..+..|..|+||||+||..|+.++|++|++.+. +++.. |..|.||||+|+..|+.++|++|++  .|++++.  .+|.
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~--~~g~   85 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQ-NRFGCTALHLACKFGCVDTAKYLAS--VGEVHSL--WHGQ   85 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHHCCHHHHHHHHH--HCCCCCC--BTTB
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-Ccccc-CCCCCcHHHHHHHcCCHHHHHHHHH--CCCCccc--cCCC
Confidence            455677889999999999999999999998754 45554 8999999999999999999999999  6875553  5799


Q ss_pred             hHHHHHHHcCcHHHHHHHHhc----CCCCCcc-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHhcCC
Q 005095          235 TALCFAAVSGVTKIAEVMVNK----NRELPSI-----------------RGNKGATPLCMAALLG--HKEMIWYLYSVTK  291 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~----g~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~ga  291 (715)
                      ||||+|+..|+.+++++|+++    |.+++ .                 +|..|.||||+|+..|  +.++|++|+++|+
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPE-SLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHH-HHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHH-HHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            999999999999999999999    77654 3                 7788999999999999  9999999999999


Q ss_pred             CCCccccccccHHHHHHHcCChhHHHHHHhhCccc----ceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcc
Q 005095          292 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL----AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM  367 (715)
Q Consensus       292 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~  367 (715)
                      +++.+|..|.||||+|+..|+.+++++|++++++.    ++.+|..|+||||+|+..|+                     
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~---------------------  223 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW---------------------  223 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC---------------------
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC---------------------
Confidence            99999999999999999999999999999999882    37889999999999999987                     


Q ss_pred             hhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCC-----------cccc
Q 005095          368 RAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL-----------IWKV  436 (715)
Q Consensus       368 ~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~-----------~~~~  436 (715)
                                   .++++.|++.     +++++..|..|.||||+|+..|+.+++++|++++++.           ....
T Consensus       224 -------------~~~v~~Ll~~-----gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  285 (364)
T 3ljn_A          224 -------------EDVAMRFVEM-----GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP  285 (364)
T ss_dssp             -------------HHHHHHHHTT-----TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCG
T ss_pred             -------------HHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccc
Confidence                         3677777664     6778888999999999999999999999999998762           1125


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          437 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       437 d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                      +..|+|||+.|+..++.+.+..|+..+++..
T Consensus       286 ~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          286 DRVVWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             GGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence            6789999999999999988888888877654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9e-39  Score=320.25  Aligned_cols=228  Identities=18%  Similarity=0.142  Sum_probs=205.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHH
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF  239 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~  239 (715)
                      +..+.||||.|+..|+.+.+++|++.++...+.. |..|.||||+|+..|+.++|++|++  .|++++.+|..|+||||+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~   79 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHI   79 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHH--hCCCCCCcCCCCCCHHHH
Confidence            3456799999999999999999999887766554 8999999999999999999999999  899999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          240 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       240 Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      |+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999999999999986 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccc
Q 005095          320 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  399 (715)
Q Consensus       320 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~  399 (715)
                      +++++++ +.+|..                                                                  
T Consensus       159 l~~g~~~-~~~~~~------------------------------------------------------------------  171 (231)
T 3aji_A          159 LFYKAST-NIQDTE------------------------------------------------------------------  171 (231)
T ss_dssp             HHTTCCS-CCCCTT------------------------------------------------------------------
T ss_pred             HhcCCCc-cccCCC------------------------------------------------------------------
Confidence            9988774 444444                                                                  


Q ss_pred             cccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 005095          400 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  465 (715)
Q Consensus       400 ~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  465 (715)
                            |.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++|++
T Consensus       172 ------g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          172 ------GNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             ------SCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             ------CCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence                  45555566666788999999999999 788999999999999999999999999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-39  Score=331.49  Aligned_cols=204  Identities=17%  Similarity=0.161  Sum_probs=134.4

Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCc
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  324 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  324 (715)
                      +.+++++|+++|++++...|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++++
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            55555555555555544445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccccccc
Q 005095          325 QLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR  404 (715)
Q Consensus       325 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~  404 (715)
                      ...+.++..|.||||+|+..++.                                  ++++.|++.     +.+++.++.
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~----------------------------------~~v~~Ll~~-----g~~~~~~d~  155 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVE----------------------------------GMLEDLINS-----HADVNAVDD  155 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCS----------------------------------SHHHHHHHT-----TCCTTCBCT
T ss_pred             CCccccCCCCCcHHHHHHHcChH----------------------------------HHHHHHHHc-----CCCCCCcCC
Confidence            33355555566666666555441                                  333444332     444555566


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHh
Q 005095          405 KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  484 (715)
Q Consensus       405 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A  484 (715)
                      .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++.    +|..|+||||+|
T Consensus       156 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----~d~~g~tpl~~A  230 (253)
T 1yyh_A          156 LGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI----TDHMDRLPRDIA  230 (253)
T ss_dssp             TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----cccCCCCHHHHH
Confidence            778888888888999999999999999 789999999999999999999999999999999985    999999999999


Q ss_pred             hhhCCCCc
Q 005095          485 GKLAPPDR  492 (715)
Q Consensus       485 ~~~~~~~~  492 (715)
                      ++.|+.+.
T Consensus       231 ~~~g~~~i  238 (253)
T 1yyh_A          231 QERMHHDI  238 (253)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCCHHH
Confidence            99998653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.8e-39  Score=332.91  Aligned_cols=252  Identities=15%  Similarity=0.067  Sum_probs=162.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccc--hhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEA--VCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      +..|.+|+||||+||..|+.++|++|++.+...  ++. .|..|+||||+|+..|+.++|++|++  +|++++.+|..|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g~   79 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKLYA--AGAGVLVAERGGH   79 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTSC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCC
Confidence            456777888888888888888888888765442  333 37778888888888888888888888  7888888888888


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCc------------cCCCCCCCHHHHHHHcCCH-HHHHHHHhcCCCCCccccccc
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPS------------IRGNKGATPLCMAALLGHK-EMIWYLYSVTKEEDLKEEDRI  301 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~------------~~d~~g~tpLh~A~~~g~~-~iv~~Ll~~ga~~~~~~~~g~  301 (715)
                      ||||+|+..|+.+++++|+++|++...            .....+.+|++.++..+.. .....+...+.+++.++..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            888888888888888888887765421            1122344555555544432 233334444555666666666


Q ss_pred             cHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHH
Q 005095          302 ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL  381 (715)
Q Consensus       302 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~  381 (715)
                      ||||+|+..|+.+++++|+++++++                                                       
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~-------------------------------------------------------  184 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADL-------------------------------------------------------  184 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCT-------------------------------------------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-------------------------------------------------------
Confidence            6666666666666666666655543                                                       


Q ss_pred             HHHHHHHHHHHhcCccccccccc-CCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 005095          382 ELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIY  460 (715)
Q Consensus       382 ~~~~~l~~~~l~~~~~~~~~~~~-~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  460 (715)
                                        +..+. .|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+
T Consensus       185 ------------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  245 (282)
T 1oy3_D          185 ------------------NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLR  245 (282)
T ss_dssp             ------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ------------------CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHH
Confidence                              22232 367777888888899999999999999 8899999999999999999999999999


Q ss_pred             HcCcchhhhhcccCCCCchHHHHhhhhCC
Q 005095          461 ELGAHKDLIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       461 ~~ga~~~~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      ++|++++    .+|..|.|||++|....+
T Consensus       246 ~~ga~~~----~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          246 AHGAPEP----EDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HTTCCCC----CCC---------------
T ss_pred             HcCCCcC----cCCCcccccccccCCccc
Confidence            9999998    499999999999987653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.6e-39  Score=324.34  Aligned_cols=164  Identities=19%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHh---hCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          158 RNCFTSYAPLHLAALKGDWDFARNFFN---LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       158 ~~~~~g~T~Lh~Aa~~g~~~~v~~LL~---~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      ..|.+|+||||+||..|+.+++++|++   ..+..++.. |..|.||||+|+..|+.+++++|++  .|++++.+|..|.
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~   80 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHGQ   80 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCC
Confidence            345555555555555555555555554   123333332 4555555555555555555555555  4555555555555


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCC----CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc-cccccHHHHHHH
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNR----ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVID  309 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~----~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~~  309 (715)
                      ||||+|+..|+.+++++|+++++    +++ .++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            55555555555555555555554    332 445555555555555555555555555555555444 444455555555


Q ss_pred             cCChhHHHHHHhhCcc
Q 005095          310 AGLYDVALDLIQHHPQ  325 (715)
Q Consensus       310 ~g~~~iv~~Ll~~~~~  325 (715)
                      .|+.+++++|+++|++
T Consensus       160 ~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            5555555554444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.2e-38  Score=314.96  Aligned_cols=215  Identities=20%  Similarity=0.210  Sum_probs=179.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM  273 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~  273 (715)
                      .|.+|.||||+|+..|+.+++++|++  .|++++..|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   83 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHL   83 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHH--cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHH
Confidence            37778888888888888888888888  788888888888888888888888888888888888775 677888888888


Q ss_pred             HHHcCCHHHHHHHHhcC-CCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCc
Q 005095          274 AALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS  352 (715)
Q Consensus       274 A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~  352 (715)
                      |+..|+.+++++|+++| .+++..+..|.||||.|+..|+.+++++|+++++++ +.+|                     
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~---------------------  141 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRD---------------------  141 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC---------------------
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccC---------------------
Confidence            88888888888888887 777878888888888888888888888888777664 3333                     


Q ss_pred             chhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCC
Q 005095          353 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL  432 (715)
Q Consensus       353 ~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~  432 (715)
                                                                         ..|.||||+|+..|+.+++++|+++|++ 
T Consensus       142 ---------------------------------------------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-  169 (237)
T 3b7b_A          142 ---------------------------------------------------NEENICLHWAAFSGCVDIAEILLAAKCD-  169 (237)
T ss_dssp             ---------------------------------------------------TTSCCHHHHHHHHCCHHHHHHHHTTTCC-
T ss_pred             ---------------------------------------------------CCCCCHHHHHHHCCCHHHHHHHHHcCCC-
Confidence                                                               3456666777777888999999999999 


Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCC
Q 005095          433 IWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       433 ~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      ++.+|..|+||||+|+..++.+++++|+++|++++.    +|.+|+||||+|+..++
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL----KNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTSCCHHHHSCTTCH
T ss_pred             CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----cCCCCCCHHHHHHHHHH
Confidence            788899999999999999999999999999999885    89999999999998875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-39  Score=336.44  Aligned_cols=265  Identities=15%  Similarity=0.120  Sum_probs=219.1

Q ss_pred             HHHHcCCHHHHHHHHhhCccchh-------hccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHH
Q 005095          169 LAALKGDWDFARNFFNLNPEAVC-------VRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA  241 (715)
Q Consensus       169 ~Aa~~g~~~~v~~LL~~~~~~~~-------~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa  241 (715)
                      .++..|+.+.++.++........       ...+..|.||||.||..|+.++|++|++  .|++++.+|..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHH
Confidence            56778888888888866443111       1123467899999999999999999999  79999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHh
Q 005095          242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  321 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  321 (715)
                      ..|+.+++++|+++|++++ .+|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..++.++++.++.
T Consensus        82 ~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           82 IDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            9999999999999999986 789999999999999999999999999999999999999999999999999999998887


Q ss_pred             hCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccc
Q 005095          322 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE  401 (715)
Q Consensus       322 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~  401 (715)
                      ......+..+..+.++++                                          ..+..++..    .......
T Consensus       161 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~l~~----~~~~~~~  194 (299)
T 1s70_B          161 RQGVDIEAARKEEERIML------------------------------------------RDARQWLNS----GHINDVR  194 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHH------------------------------------------HHHHHHHHH----TCCCCCC
T ss_pred             hcCCCchhhhhhhhhHHH------------------------------------------HHHHHHHhc----cCcchhh
Confidence            643322222222222221                                          111222222    2333344


Q ss_pred             cccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHH
Q 005095          402 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML  481 (715)
Q Consensus       402 ~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpL  481 (715)
                      .+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+|||
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l  269 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAF  269 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC----cCCCCCCHH
Confidence            567899999999999999999999999999 889999999999999999999999999999999984    999999999


Q ss_pred             HHhhhh
Q 005095          482 HLAGKL  487 (715)
Q Consensus       482 h~A~~~  487 (715)
                      |+|++.
T Consensus       270 ~~A~~~  275 (299)
T 1s70_B          270 DVADED  275 (299)
T ss_dssp             TSCCSG
T ss_pred             HHHHHH
Confidence            999753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.2e-38  Score=327.23  Aligned_cols=262  Identities=17%  Similarity=0.142  Sum_probs=182.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---cccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP  270 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~---i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tp  270 (715)
                      .|.+|+||||+||..|+.++|++|++  .|++   ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tp   81 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTA   81 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCH
Confidence            48899999999999999999999998  5666   88888999999999999999999999999999986 788899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCccc
Q 005095          271 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFAS  350 (715)
Q Consensus       271 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~  350 (715)
                      ||+|+..|+.+++++|+++|++........                  ++....   ......+.++++.++..+..   
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~---  137 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDT------------------YLTQSQ---DCTPDTSHAPAAVDSQPNPE---  137 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------------------------
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHH------------------Hhhccc---ccCcchhcchhhhccccccc---
Confidence            999999999999999999888754332211                  111111   22234566777776654321   


Q ss_pred             CcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCC
Q 005095          351 GSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYP  430 (715)
Q Consensus       351 ~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~  430 (715)
                                                         ......+...+.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       138 -----------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  182 (282)
T 1oy3_D          138 -----------------------------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (282)
T ss_dssp             -----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             -----------------------------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence                                               011112223356677888999999999999999999999999999


Q ss_pred             CCccccCC-CCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhh
Q 005095          431 NLIWKVDD-HSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHW  509 (715)
Q Consensus       431 d~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~  509 (715)
                      + ++.++. .|+||||+|+..|+.+++++|+++|++++.    +|..|+||||+|++.++.+                  
T Consensus       183 ~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~tpL~~A~~~~~~~------------------  239 (282)
T 1oy3_D          183 D-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA----RMYGGRTPLGSALLRPNPI------------------  239 (282)
T ss_dssp             C-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHTSSCHH------------------
T ss_pred             C-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc----cccCCCCHHHHHHHcCCcH------------------
Confidence            9 666664 599999999999999999999999999984    9999999999999988743                  


Q ss_pred             HHHHHHhhc-chhHhhhhcCCCCchhhhHHHhhH
Q 005095          510 FKEIEKVVQ-PSYREAKNSEGRTPHILFSEEHRR  542 (715)
Q Consensus       510 ~~~v~~ll~-~~~~~~~n~~G~Tpl~~a~~~~~~  542 (715)
                        .++.+++ +++++.+|.+|+||+++|......
T Consensus       240 --~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          240 --LARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             --HHHHHHHTTCCCCCCC----------------
T ss_pred             --HHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence              3444444 566799999999999999876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.9e-38  Score=315.28  Aligned_cols=219  Identities=20%  Similarity=0.211  Sum_probs=186.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL  271 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~--~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpL  271 (715)
                      .|.+|+||||+||..|+.+++++|++.  ..+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l   83 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAA   83 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHH
Confidence            488999999999999999999999862  1588999999999999999999999999999999999986 7899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCC----CCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecC-CCCCCHHHHHHhCCC
Q 005095          272 CMAALLGHKEMIWYLYSVTK----EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD-GNGETALHVLARKPS  346 (715)
Q Consensus       272 h~A~~~g~~~iv~~Ll~~ga----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~  346 (715)
                      |+|+..|+.+++++|+++++    +++..+..|.||||.|+..|+.+++++|++.++++ +..+ .              
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~--------------  148 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIK--------------  148 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT--------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccccc--------------
Confidence            99999999999999999987    78888999999999999999999999999988775 3333 3              


Q ss_pred             CcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHH
Q 005095          347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI  426 (715)
Q Consensus       347 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll  426 (715)
                                                                                .|.||||+|+..|+.+++++|+
T Consensus       149 ----------------------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll  170 (241)
T 1k1a_A          149 ----------------------------------------------------------SGRSPLIHAVENNSLSMVQLLL  170 (241)
T ss_dssp             ----------------------------------------------------------TCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------------------------------------------CCCcHHHHHHHcCCHHHHHHHH
Confidence                                                                      3455666666667788888888


Q ss_pred             HhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          427 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       427 ~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      ++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++.    +|..|+||||+|+..++.+
T Consensus       171 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~A~~~~~~~  230 (241)
T 1k1a_A          171 QHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVID  230 (241)
T ss_dssp             HTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHH
T ss_pred             HcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----cCCCCCCHHHHHHhcCcHH
Confidence            88888 777888888888888888888888888888888874    8888888888888876544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.7e-37  Score=312.26  Aligned_cols=228  Identities=18%  Similarity=0.196  Sum_probs=203.1

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      +++..+.+|+||||+||..|+.+++++|++.+.. ++.. +..|.||||+|+..|+.+++++|++  .|++++.+|..|.
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~   78 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTC-SEDQRTPLMEAAENNHLEAVKYLIK--AGALVDPKDAEGS   78 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCC-CTTCCCHHHHHHHTTCHHHHHHHHT--TTCCCCCCCTTSC
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCcc-CCCCCCHHHHHHHhCCHHHHHHHHh--CCCCCCCCCCCCC
Confidence            4677899999999999999999999999987554 4443 8899999999999999999999999  8999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCCh
Q 005095          235 TALCFAAVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY  313 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  313 (715)
                      ||||+|+..|+.+++++|+++| .++ +.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999 455 47899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHh
Q 005095          314 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL  393 (715)
Q Consensus       314 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~  393 (715)
                      +++++|++.++++ +.+|..|                                                           
T Consensus       158 ~~~~~Ll~~g~~~-~~~~~~g-----------------------------------------------------------  177 (237)
T 3b7b_A          158 DIAEILLAAKCDL-HAVNIHG-----------------------------------------------------------  177 (237)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTC-----------------------------------------------------------
T ss_pred             HHHHHHHHcCCCC-CCcCCCC-----------------------------------------------------------
Confidence            9999999998775 4444444                                                           


Q ss_pred             cCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 005095          394 LDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  461 (715)
Q Consensus       394 ~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  461 (715)
                                   .||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+.+++.+.+..|++
T Consensus       178 -------------~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          178 -------------DSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             -------------CCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             -------------CCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                         4555556666778899999999999 78889999999999999999876666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=326.97  Aligned_cols=232  Identities=15%  Similarity=0.188  Sum_probs=158.0

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchh------hccCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCcccccc
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC------VRISRNQDTALHIAAGARRT-LFVQELVNLMTPEDLALR  229 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~------~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~g~~i~~~  229 (715)
                      ..+|..+.+||+.||..|+.++|++||+.+.....      ...+..|.||||.|+..++. +++++|++  .|+++|.+
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~--~Gadvn~~   82 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA--SGLGVNVT   82 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CCCCTTCC
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHH--CCCCCCCc
Confidence            34566778999999999999999999987654321      12366788999999887765 47788888  78999999


Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHH
Q 005095          230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID  309 (715)
Q Consensus       230 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  309 (715)
                      |.+|+||||+|+..|+.++|++|++.|++++ .++..|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999999998876 788889999999999999999999999999988888888888888888


Q ss_pred             cCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHH
Q 005095          310 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  389 (715)
Q Consensus       310 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~  389 (715)
                      .|+.+++++|+++|+++ +.+|..                                                        
T Consensus       162 ~g~~~~v~~Ll~~gadv-n~~~~~--------------------------------------------------------  184 (269)
T 4b93_B          162 GGHHELVALLLQHGASI-NASNNK--------------------------------------------------------  184 (269)
T ss_dssp             TTCGGGHHHHHHTTCCT-TCBCTT--------------------------------------------------------
T ss_pred             CCCHHHHHHHHHCCCCC-CccccC--------------------------------------------------------
Confidence            88888888888887764 444444                                                        


Q ss_pred             HHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCC-HHHHHHHHHcCcc
Q 005095          390 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ-EKIFNLIYELGAH  465 (715)
Q Consensus       390 ~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~-~~iv~~Ll~~ga~  465 (715)
                                      |.||||+|+..|+.++|++|+++|+| ++.+|.+|+||||+|+++++ .+++++|.+.++.
T Consensus       185 ----------------g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          185 ----------------GNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             ----------------SCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             ----------------CCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence                            45555556666778889999999988 78889999999999988775 3444455554443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.9e-37  Score=306.81  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=161.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC--ccccc-ccCCCChHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP--EDLAL-RNKVGNTALCF  239 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g--~~i~~-~d~~G~TpLh~  239 (715)
                      |+||||+||..|+.+++++|++.++...... |..|.||||+|+..|+.+++++|++  .|  .+++. +|..|.||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCCGGGCCCTTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHh--ccccccccccCCCCCCCHHHH
Confidence            5688888888888888888888776655443 7888888888888888888888888  56  55665 77788888888


Q ss_pred             HHHcCcHHHHHHHHhcC--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHH
Q 005095          240 AAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL  317 (715)
Q Consensus       240 Aa~~g~~~iv~~Ll~~g--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~  317 (715)
                      |+..|+.+++++|+++|  ++++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            88888888888888887  6664 67788888888888888888888888888888888777888888887777777777


Q ss_pred             HHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcc
Q 005095          318 DLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDS  397 (715)
Q Consensus       318 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~  397 (715)
                      +|++.++..++.+|..|                                                               
T Consensus       158 ~Ll~~g~~~~~~~d~~g---------------------------------------------------------------  174 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQG---------------------------------------------------------------  174 (228)
T ss_dssp             HHHTTTCCCSCCCCTTS---------------------------------------------------------------
T ss_pred             HHHhcCcccccCcCCCC---------------------------------------------------------------
Confidence            77777622224433333                                                               


Q ss_pred             cccccccCCchHHHHHHHcCCHHHHHHHH-HhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 005095          398 KIGELLRKPSRLLFTAVELGNVEFLMVLI-QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  461 (715)
Q Consensus       398 ~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll-~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  461 (715)
                               .||||+|+..|+.+++++|+ ++|++ ++.+|..|+||||+|+..   +++++|++
T Consensus       175 ---------~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          175 ---------WTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             ---------CCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             ---------CCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence                     34444444455667777777 66777 667777777777777543   45555554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-38  Score=320.87  Aligned_cols=215  Identities=18%  Similarity=0.221  Sum_probs=163.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--------cccccCCCChHHHHHHHcCcH-HHHHHHHhcCCCCCccCC
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPED--------LALRNKVGNTALCFAAVSGVT-KIAEVMVNKNRELPSIRG  264 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~--------i~~~d~~G~TpLh~Aa~~g~~-~iv~~Ll~~g~~~~~~~d  264 (715)
                      +|..+.+||+.||..|+.++|++||+  .+++        ++..|..|.||||.|+..++. .++++|+++|++++ .+|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d   83 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTS   83 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCTT-CCC
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcC
Confidence            47778899999999999999999999  5654        566778899999999988775 48899999999986 789


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhC
Q 005095          265 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK  344 (715)
Q Consensus       265 ~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  344 (715)
                      .+|.||||+|+..|+.++|++|++.|++++.++.+|.||+|.|+..++.+++++|++.++++ +.+|..|+|        
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~T--------  154 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNT--------  154 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCC--------
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCC--------
Confidence            99999999999999999999999999999999999999999999999999999999988775 555555554        


Q ss_pred             CCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHH
Q 005095          345 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMV  424 (715)
Q Consensus       345 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~  424 (715)
                                                                                      |||+|+..|+.++|++
T Consensus       155 ----------------------------------------------------------------pL~~A~~~g~~~~v~~  170 (269)
T 4b93_B          155 ----------------------------------------------------------------PLIYACSGGHHELVAL  170 (269)
T ss_dssp             ----------------------------------------------------------------HHHHHHHTTCGGGHHH
T ss_pred             ----------------------------------------------------------------HHHHHHHCCCHHHHHH
Confidence                                                                            4555555667789999


Q ss_pred             HHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCC
Q 005095          425 LIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       425 Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      |+++|++ ++.+|..|+||||+|+.+|+.++|++|+++|+|++.    +|.+|+||||+|+++++
T Consensus       171 Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          171 LLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----LNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCSGGGSCTTCH
T ss_pred             HHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHhCCc
Confidence            9999999 889999999999999999999999999999999984    99999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.3e-37  Score=307.13  Aligned_cols=231  Identities=19%  Similarity=0.172  Sum_probs=173.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |..|.||||.|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            5667777777777777777777777  67777777777777777777777777777777777776655556677777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      +..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|+++++++ +.++..|.||||+|+..++.      .
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~------~  156 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHS------V  156 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCS------S
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCCh------H
Confidence            7777777777777777777777777777777777777777777777777764 66777777777777755431      1


Q ss_pred             hhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccccccc-CCchHHHHHHHcCCHHHHHHHHHhCCCCc
Q 005095          355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLI  433 (715)
Q Consensus       355 ~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~-~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~  433 (715)
                                                 ++++.|++.     +.+++..+. .|.||||+|+..|+.+++++|+++|++ +
T Consensus       157 ---------------------------~~~~~L~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~  203 (240)
T 3eu9_A          157 ---------------------------DPTRLLLTF-----NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-V  203 (240)
T ss_dssp             ---------------------------TTHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-T
T ss_pred             ---------------------------HHHHHHHhc-----CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence                                       223333332     445555554 788999999999999999999999999 7


Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          434 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       434 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                      +.+|..|+||||+|++.|+.+++++|++++++..
T Consensus       204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            8999999999999999999999999999998754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.3e-36  Score=303.87  Aligned_cols=211  Identities=18%  Similarity=0.238  Sum_probs=182.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccc-cccCCCChHHHHHHHcCcHHHHHHHHhcC--CCCCccCCCCCCCHHHHH
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLA-LRNKVGNTALCFAAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMA  274 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~-~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g--~~~~~~~d~~g~tpLh~A  274 (715)
                      |+||||+|+..|+.++|++|++  .+.++. .+|..|+||||+|+..|+.+++++|+++|  .++....+..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHH--HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHh--cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            7899999999999999999999  566554 48899999999999999999999999999  555533788999999999


Q ss_pred             HHcCCHHHHHHHHhcC--CCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCc
Q 005095          275 ALLGHKEMIWYLYSVT--KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS  352 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~g--a~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~  352 (715)
                      +..|+.+++++|+++|  ++++..+..|.||||.|+..|+.+++++|+++++++ +.+|..                   
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~-------------------  139 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKF-------------------  139 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTT-------------------
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCC-------------------
Confidence            9999999999999998  888888889999999999999999999999887774 444444                   


Q ss_pred             chhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCC
Q 005095          353 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL  432 (715)
Q Consensus       353 ~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~  432 (715)
                                                                           |.||||+|+..|+.+++++|+++|+..
T Consensus       140 -----------------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~  166 (228)
T 2dzn_A          140 -----------------------------------------------------NQIPLHRAASVGSLKLIELLCGLGKSA  166 (228)
T ss_dssp             -----------------------------------------------------SCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             -----------------------------------------------------CCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence                                                                 455556666667889999999999333


Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHH-HcCcchhhhhcccCCCCchHHHHhhhh
Q 005095          433 IWKVDDHSRSMFHIAVVHRQEKIFNLIY-ELGAHKDLIASYKDENNNNMLHLAGKL  487 (715)
Q Consensus       433 ~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~ga~~~~l~~~~d~~G~TpLh~A~~~  487 (715)
                      ++.+|..|+||||+|+..|+.+++++|+ ++|++++.    +|..|+||||+|++.
T Consensus       167 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~----~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALNE  218 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----BCTTSCBGGGGCSST
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc----cCCCCCcHHHHHHHH
Confidence            8999999999999999999999999999 89999984    999999999999765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.7e-37  Score=318.44  Aligned_cols=238  Identities=13%  Similarity=0.064  Sum_probs=208.1

Q ss_pred             cCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHH
Q 005095          173 KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM  252 (715)
Q Consensus       173 ~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~L  252 (715)
                      ..+.+.++.+|..+  .++. .|.+|.||||+|+..|+.++|++|++  .|++++.+|  |+||||+|+..|+.+++++|
T Consensus         9 ~~~~~~v~~lL~~~--~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            9 TWKSKQLKSFLSSK--DTFK-ADVHGHSASYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GCCHHHHHHHHHST--TTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH--TTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred             hcCHHHHHHHHHhC--CCCc-cCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence            44455555566554  2444 48999999999999999999999999  899999884  99999999999999999999


Q ss_pred             HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccc-ccHHHHHHHcCChhHHHHHHhhCcccceecC
Q 005095          253 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-IELLVAVIDAGLYDVALDLIQHHPQLAMARD  331 (715)
Q Consensus       253 l~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d  331 (715)
                      +++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|++++++..+  .
T Consensus        82 l~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~  158 (285)
T 3kea_A           82 LFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--L  158 (285)
T ss_dssp             HHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--C
T ss_pred             HHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--c
Confidence            99999986 789999999999999999999999999999999999999 8999999999999999999999987521  1


Q ss_pred             CCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchH-H
Q 005095          332 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRL-L  410 (715)
Q Consensus       332 ~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~-L  410 (715)
                      ..|+||||+|+..|+                                  .+++++|+++     +++++.++..|.|| |
T Consensus       159 ~~g~t~L~~A~~~g~----------------------------------~~~v~~Ll~~-----gad~n~~~~~g~t~~L  199 (285)
T 3kea_A          159 AILLSCIHITIKNGH----------------------------------VDMMILLLDY-----MTSTNTNNSLLFIPDI  199 (285)
T ss_dssp             STHHHHHHHHHHTTC----------------------------------HHHHHHHHHH-----HHHTCTTCCCBCCTTH
T ss_pred             cCCccHHHHHHHcCh----------------------------------HHHHHHHHHc-----CCCCCcccCCCCChHH
Confidence            389999999999887                                  3788888887     45567778889997 9


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          411 FTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       411 h~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                      |+|+..|+.+++++|+++|++ ++.+|       +.|+..|+.+++++|+++|++++
T Consensus       200 ~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          200 KLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             HHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999 66666       36788999999999999999876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2e-36  Score=303.11  Aligned_cols=215  Identities=16%  Similarity=0.151  Sum_probs=191.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      +..+.||||.|+..|+.+.++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHH
Confidence            45688999999999999999999985 455678889999999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      +..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|++++.+. +.+|.                      
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~----------------------  137 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDH----------------------  137 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT----------------------
T ss_pred             HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC----------------------
Confidence            9999999999999999999999999999999999999999999999887764 33333                      


Q ss_pred             hhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 005095          355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  434 (715)
Q Consensus       355 ~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~  434 (715)
                                                                        .|.||||+|+..|+.+++++|+++|++ ++
T Consensus       138 --------------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~  166 (231)
T 3aji_A          138 --------------------------------------------------YDATAMHRAAAKGNLKMVHILLFYKAS-TN  166 (231)
T ss_dssp             --------------------------------------------------TSCCHHHHHHHHTCHHHHHHHHHTTCC-SC
T ss_pred             --------------------------------------------------CCCcHHHHHHHcCCHHHHHHHHhcCCC-cc
Confidence                                                              456667777777889999999999999 78


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCC
Q 005095          435 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       435 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      .+|..|+||||+|+..++.+++++|+++|++++.    +|..|+||||+|++.++
T Consensus       167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI----ENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHSCHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhhHH
Confidence            8999999999999999999999999999999884    99999999999987754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-36  Score=300.62  Aligned_cols=217  Identities=20%  Similarity=0.219  Sum_probs=187.6

Q ss_pred             CCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHH
Q 005095          174 GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV  253 (715)
Q Consensus       174 g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  253 (715)
                      |+.+++++|++.+.... ...|.+|.||||+|+..|+.++|++|++  .|++++.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcc-cccCCCCCchHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            67788888888766544 3348899999999999999999999999  89999999999999999999999999999999


Q ss_pred             hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCC
Q 005095          254 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGN  333 (715)
Q Consensus       254 ~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  333 (715)
                      ++++.....++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++++ +.+|..
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  157 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  157 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9998444578999999999999999999999999999999999999999999999999999999999988764 444444


Q ss_pred             CCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHH
Q 005095          334 GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTA  413 (715)
Q Consensus       334 g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A  413 (715)
                                                                                              |.||||+|
T Consensus       158 ------------------------------------------------------------------------g~t~L~~A  165 (223)
T 2f8y_A          158 ------------------------------------------------------------------------EETPLFLA  165 (223)
T ss_dssp             ------------------------------------------------------------------------CCCHHHHH
T ss_pred             ------------------------------------------------------------------------CcCHHHHH
Confidence                                                                                    45566666


Q ss_pred             HHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          414 VELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       414 ~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                      ++.|+.+++++|+++|++ ++.+|..|+||||+|+++++.+++++|+++|+...
T Consensus       166 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          166 AREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            667788999999999999 78889999999999999999999999999998754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-38  Score=331.19  Aligned_cols=205  Identities=14%  Similarity=0.108  Sum_probs=130.6

Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCC---h
Q 005095          237 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL---Y  313 (715)
Q Consensus       237 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~---~  313 (715)
                      +|+|+..+..+++++|++.|++++..+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+   .
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            4556666666666666666666652256666666666666666666666666666666666666666666666665   5


Q ss_pred             hHHHHHHhhCcccceecCCCCCCHHHHHHh----CCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHH
Q 005095          314 DVALDLIQHHPQLAMARDGNGETALHVLAR----KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  389 (715)
Q Consensus       314 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~  389 (715)
                      ++++.|++.+...++.+|..|+||||+|+.    .|+       .                           ++++.|++
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-------~---------------------------~~v~~Ll~  226 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-------S---------------------------AAAKYYLD  226 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-------H---------------------------HHHHHHHH
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-------H---------------------------HHHHHHHH
Confidence            556666665533345666666666666665    332       2                           22233322


Q ss_pred             HHH---------------hcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHH
Q 005095          390 QVL---------------LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEK  454 (715)
Q Consensus       390 ~~l---------------~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~  454 (715)
                      .+.               ...+.+++.++..|.||||.|+.      +++|+++  + ++.+|..|+||||+|+.+|+.+
T Consensus       227 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~  297 (327)
T 1sw6_A          227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNIS  297 (327)
T ss_dssp             HHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHH
Confidence            211               12367788889999999999996      8999998  3 6788999999999999999999


Q ss_pred             HHHHHHHcCcchhhhhcccCCCCchHHHHhhhhC
Q 005095          455 IFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA  488 (715)
Q Consensus       455 iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~  488 (715)
                      ++++|+++|++++.    +|..|+||||+|++.|
T Consensus       298 ~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          298 IVDALLDYGADPFI----ANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHTTCCTTC----CCTTSCCGGGGTCC--
T ss_pred             HHHHHHHcCCCCcc----cCCCCCCHHHHHHhcC
Confidence            99999999999984    9999999999999764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=291.42  Aligned_cols=230  Identities=17%  Similarity=0.143  Sum_probs=206.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCh
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNT  235 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~-~G~T  235 (715)
                      +..|..|.||||.|+..|+.+++++|++.+.+ ++.. +..|.||||+|+..|+.++|++|++  .|.+++..+. .|.|
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQP-DKENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNST   78 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCBTTTTBC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCC-CCCCCCHHHHHHHhCCHHHHHHHHH--cCCcchhhcCCcCCC
Confidence            45577788999999999999999999987644 4443 8899999999999999999999999  7888876554 5999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCC-hh
Q 005095          236 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL-YD  314 (715)
Q Consensus       236 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~-~~  314 (715)
                      |||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++ .+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence            9999999999999999999999986 789999999999999999999999999999999999999999999997766 89


Q ss_pred             HHHHHHhhCcccceecCC-CCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHh
Q 005095          315 VALDLIQHHPQLAMARDG-NGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL  393 (715)
Q Consensus       315 iv~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~  393 (715)
                      ++++|++.++++ +..+. .|.||||+|+..++                                  .+++++|++.   
T Consensus       158 ~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~----------------------------------~~~v~~Ll~~---  199 (240)
T 3eu9_A          158 PTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGN----------------------------------TTVISLLLEA---  199 (240)
T ss_dssp             THHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTC----------------------------------HHHHHHHHHH---
T ss_pred             HHHHHHhcCCCc-chhhccCCCcHHHHHHHcCC----------------------------------HHHHHHHHHc---
Confidence            999999999996 66665 89999999999886                                  3777888776   


Q ss_pred             cCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 005095          394 LDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN  431 (715)
Q Consensus       394 ~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d  431 (715)
                        +.+++.++..|.||||+|++.|+.+++++|++++++
T Consensus       200 --g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          200 --GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             --TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             --CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence              677788889999999999999999999999999887

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-35  Score=307.60  Aligned_cols=268  Identities=16%  Similarity=0.178  Sum_probs=216.4

Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccc---------cccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          204 IAAGARRTLFVQELVNLMTPEDLA---------LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       204 ~Aa~~g~~~iv~~Ll~~~~g~~i~---------~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      .++..++.+.++.++.  ...++.         ..+..|.||||.|+..|+.++|++|+++|++++ .+|..|.||||+|
T Consensus         4 ~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   80 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIG--SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQA   80 (299)
T ss_dssp             HHHHHHHHHHHHHHHH--TTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHH
T ss_pred             hHHHHHHHHHHHHHHc--cccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            5777888888888887  343322         234568899999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      +..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++++++ +..|.+|.||||+|+..++       .
T Consensus        81 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~  152 (299)
T 1s70_B           81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAM-------E  152 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHH-------H
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcch-------H
Confidence            9999999999999999999999999999999999999999999999999986 7889999999999987643       1


Q ss_pred             hhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 005095          355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  434 (715)
Q Consensus       355 ~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~  434 (715)
                                                 ++++.++..    .+.+++..+..+.++++        ..++.++..+.....
T Consensus       153 ---------------------------~~~~~ll~~----~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          153 ---------------------------ELLQNEVNR----QGVDIEAARKEEERIML--------RDARQWLNSGHINDV  193 (299)
T ss_dssp             ---------------------------HHHHHHHHH----HTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCC
T ss_pred             ---------------------------HHHHHHHhh----cCCCchhhhhhhhhHHH--------HHHHHHHhccCcchh
Confidence                                       333333332    23333332223333333        345567777776667


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHH
Q 005095          435 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIE  514 (715)
Q Consensus       435 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~  514 (715)
                      ..+..|+||||+|+..|+.+++++|+++|++++.    +|..|+||||+|+..|+.+                    .++
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~----~d~~g~tpL~~A~~~~~~~--------------------~v~  249 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----KDYDGWTPLHAAAHWGKEE--------------------ACR  249 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----CCTTCCCHHHHHHHTTCHH--------------------HHH
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC----cCCCCCcHHHHHHhcCCHH--------------------HHH
Confidence            7789999999999999999999999999999984    9999999999999998743                    344


Q ss_pred             Hhhc-chhHhhhhcCCCCchhhhHHHhhHhhh
Q 005095          515 KVVQ-PSYREAKNSEGRTPHILFSEEHRRLVR  545 (715)
Q Consensus       515 ~ll~-~~~~~~~n~~G~Tpl~~a~~~~~~~~~  545 (715)
                      .+++ +.+++.+|..|+||+++|.++..+.++
T Consensus       250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~  281 (299)
T 1s70_B          250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLE  281 (299)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence            4444 556799999999999999876554443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-34  Score=300.36  Aligned_cols=210  Identities=12%  Similarity=0.149  Sum_probs=185.9

Q ss_pred             CHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 005095          210 RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV  289 (715)
Q Consensus       210 ~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  289 (715)
                      ..+++++|.+  .  +++.+|.+|+||||+|+..|+.+++++|+++|++++ .+  +|.||||+|+..|+.+++++|+++
T Consensus        12 ~~~v~~lL~~--~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           12 SKQLKSFLSS--K--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             HHHHHHHHHS--T--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             HHHHHHHHHh--C--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3455555544  3  689999999999999999999999999999999986 34  499999999999999999999999


Q ss_pred             CCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCC-CCHHHHHHhCCCCcccCcchhhHhhhhhcCCcch
Q 005095          290 TKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNG-ETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR  368 (715)
Q Consensus       290 ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~  368 (715)
                      |++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..| .||||+|+..|+                      
T Consensus        85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~----------------------  141 (285)
T 3kea_A           85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLND----------------------  141 (285)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTC----------------------
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCC----------------------
Confidence            9999999999999999999999999999999999996 8899999 799999999986                      


Q ss_pred             hccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH-HHHH
Q 005095          369 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSM-FHIA  447 (715)
Q Consensus       369 ~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~-Lh~A  447 (715)
                                  .+++++|++.+.     +.... ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|
T Consensus       142 ------------~~~v~~Ll~~g~-----~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A  202 (285)
T 3kea_A          142 ------------VSIVSYFLSEIP-----STFDL-AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLA  202 (285)
T ss_dssp             ------------HHHHHHHHTTSC-----TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHH
T ss_pred             ------------HHHHHHHHhCCC-----ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHH
Confidence                        366666665532     22111 2789999999999999999999999999 88999999998 9999


Q ss_pred             HHhCCHHHHHHHHHcCcchhh
Q 005095          448 VVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       448 ~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                      +.+|+.+++++|+++|++++.
T Consensus       203 ~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          203 IDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             HHHTCHHHHHHHTTSCBCSTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999884

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.8e-34  Score=285.87  Aligned_cols=202  Identities=18%  Similarity=0.200  Sum_probs=150.1

Q ss_pred             CCHHHHHHHHhcCCCcccccc-cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 005095          209 RRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  287 (715)
Q Consensus       209 g~~~iv~~Ll~~~~g~~i~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  287 (715)
                      |+.+++++|++  .|++++.. |..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEE--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHH--cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55666666666  56666554 5666666666666666666666666666664 56666666666666666666666666


Q ss_pred             hcCC-CCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCc
Q 005095          288 SVTK-EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG  366 (715)
Q Consensus       288 ~~ga-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~  366 (715)
                      ++++ +++..+..|.||||+|+..|+.+++++|+++++++                                        
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------------------------------------  118 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV----------------------------------------  118 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT----------------------------------------
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC----------------------------------------
Confidence            6665 56666666666666666666666666666655543                                        


Q ss_pred             chhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q 005095          367 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI  446 (715)
Q Consensus       367 ~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~  446 (715)
                                                       +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus       119 ---------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~  164 (223)
T 2f8y_A          119 ---------------------------------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFL  164 (223)
T ss_dssp             ---------------------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             ---------------------------------cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHH
Confidence                                             33344566777777778889999999999999 78899999999999


Q ss_pred             HHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          447 AVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       447 A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      |+..|+.+++++|+++|++++.    +|..|+||||+|++.++.+
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~~  205 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRDI----TDHMDRLPRDIAQERMHHD  205 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcc----ccccCCCHHHHHHHhcchH
Confidence            9999999999999999999984    8999999999999998754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-35  Score=311.22  Aligned_cols=248  Identities=11%  Similarity=0.047  Sum_probs=195.5

Q ss_pred             ccccCCCCCCcccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhc---------------cCCCCCcHHHHHHHc
Q 005095          144 VSLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR---------------ISRNQDTALHIAAGA  208 (715)
Q Consensus       144 ~~l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~---------------~d~~g~TpLh~Aa~~  208 (715)
                      .++.+.|+   +++..+..|.|+++     |+.++|+.||+++.......               ......+.+|.|+..
T Consensus        36 ~~ll~~ga---~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~  107 (327)
T 1sw6_A           36 SDFLSSPL---KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS  107 (327)
T ss_dssp             CSTTTSSC---CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHH
T ss_pred             HHHhhCCc---ccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHh
Confidence            34667787   45666778899988     99999999998764321100               011122346888988


Q ss_pred             CCHHHHHHHHhcCCCccccc-ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC---HHHHH
Q 005095          209 RRTLFVQELVNLMTPEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH---KEMIW  284 (715)
Q Consensus       209 g~~~iv~~Ll~~~~g~~i~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~---~~iv~  284 (715)
                      +..+++++|++  .|+++|. +|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+   .++++
T Consensus       108 ~~~~~~~~l~~--~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          108 LLQEVNDAFPN--TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             HHHHHHHHCTT--SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred             hHHHHHHHHHh--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHH
Confidence            99999999999  8999999 89999999999999999999999999999997 899999999999999999   78889


Q ss_pred             HHHhcC-CCCCccccccccHHHHHHH----cCChhHHHHHHhh--------------------CcccceecCCCCCCHHH
Q 005095          285 YLYSVT-KEEDLKEEDRIELLVAVID----AGLYDVALDLIQH--------------------HPQLAMARDGNGETALH  339 (715)
Q Consensus       285 ~Ll~~g-a~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~tpLh  339 (715)
                      .|++.+ ++++.++..|.||||+|+.    .|+.+++++|++.                    ++++ +.++..|+||||
T Consensus       185 ~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~  263 (327)
T 1sw6_A          185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSIL  263 (327)
T ss_dssp             HHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHH
T ss_pred             HHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhH
Confidence            999887 7899999999999999999    8999999999988                    4443 667777778887


Q ss_pred             HHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCH
Q 005095          340 VLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNV  419 (715)
Q Consensus       340 ~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~  419 (715)
                      .|+.                                        +++|++.       +++.+|..|+||||+|++.|+.
T Consensus       264 ~a~~----------------------------------------~~~Ll~~-------~~n~~d~~G~TpLh~A~~~g~~  296 (327)
T 1sw6_A          264 ENLD----------------------------------------LKWIIAN-------MLNAQDSNGDTCLNIAARLGNI  296 (327)
T ss_dssp             HHCS----------------------------------------HHHHHHH-------TTTCCCTTSCCHHHHHHHHCCH
T ss_pred             HHHH----------------------------------------HHHHHHh-------CCCCCCCCCCCHHHHHHHcCCH
Confidence            7763                                        3455544       4677889999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHhC
Q 005095          420 EFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR  451 (715)
Q Consensus       420 eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~  451 (715)
                      ++|++|+++|++ ++.+|..|+||||+|+++|
T Consensus       297 ~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          297 SIVDALLDYGAD-PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence            999999999999 8999999999999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.2e-35  Score=295.66  Aligned_cols=217  Identities=16%  Similarity=0.195  Sum_probs=144.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcC--CCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLM--TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC  272 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh  272 (715)
                      |.+|+||||+|+..|+.+++++|++..  .+++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHH
Confidence            556666666666666666666666521  112566666666666666666666666666666666664 56666666666


Q ss_pred             HHHHcCCHHHHHHHHhcCCC------CCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          273 MAALLGHKEMIWYLYSVTKE------EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       273 ~A~~~g~~~iv~~Ll~~ga~------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      +|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|+++ +.++.              
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--------------  148 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEP--------------  148 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT--------------
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC--------------
Confidence            66666666666666666654      2334445555555555555555555555555443 22222              


Q ss_pred             CcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHH
Q 005095          347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI  426 (715)
Q Consensus       347 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll  426 (715)
                                                                               ..|.||||+|+..|+.+++++|+
T Consensus       149 ---------------------------------------------------------~~g~tpL~~A~~~~~~~~v~~Ll  171 (236)
T 1ikn_D          149 ---------------------------------------------------------CNGRTALHLAVDLQNPDLVSLLL  171 (236)
T ss_dssp             ---------------------------------------------------------TTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------------------------------CCCCCHHHHHHHcCCHHHHHHHH
Confidence                                                                     14556666666777888999999


Q ss_pred             HhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhh
Q 005095          427 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKL  487 (715)
Q Consensus       427 ~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~  487 (715)
                      ++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++...  ..++.+|.||.+.+...
T Consensus       172 ~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          172 KCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ--MLPESEDEESYDTESEF  229 (236)
T ss_dssp             TTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS--SCCCCCTTTCCCCC---
T ss_pred             HcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh--cCCccchHHHHhhhccc
Confidence            99998 788899999999999999999999999999998763  34889999998887654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.7e-35  Score=292.89  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=159.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCcc---chhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPE---AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG  233 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~---~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G  233 (715)
                      +..|.+|+||||+|+..|+.+++++|++....   .++. .|..|.||||+|+..|+.++|++|++  .|++++.+|..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCC
Confidence            45678899999999999999999999987654   3444 48899999999999999999999999  899999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCC-----CccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccc-ccccHHHHH
Q 005095          234 NTALCFAAVSGVTKIAEVMVNKNREL-----PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEE-DRIELLVAV  307 (715)
Q Consensus       234 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~-----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~L~~A  307 (715)
                      .||||+|+..|+.+++++|+++|++.     ....+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999752     346788999999999999999999999999999999998 999999999


Q ss_pred             HHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhC
Q 005095          308 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK  344 (715)
Q Consensus       308 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  344 (715)
                      +..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus       159 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             HHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTS
T ss_pred             HHcCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHcc
Confidence            9999999999999999885 67777777776666543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.6e-33  Score=278.30  Aligned_cols=181  Identities=20%  Similarity=0.203  Sum_probs=167.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-----ccccCCCChH
Q 005095          162 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL-----ALRNKVGNTA  236 (715)
Q Consensus       162 ~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i-----~~~d~~G~Tp  236 (715)
                      .|+||||+|+..|+.+++++|++..+.+++.+ |..|+||||+|+..|+.++|++|++  .|+++     +.+|..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcCH
Confidence            47899999999999999999998866677665 8999999999999999999999999  78876     6778899999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCC-------------CCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccH
Q 005095          237 LCFAAVSGVTKIAEVMVNKNRELPSIRGN-------------KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL  303 (715)
Q Consensus       237 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  303 (715)
                      ||+|+..|+.+++++|+++|++++ .++.             .|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVS-ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCC-cccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            999999999999999999999986 4443             79999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHH----HHHHhhCcccc-----eecCCCCCCHHHHHHhCCC
Q 005095          304 LVAVIDAGLYDVA----LDLIQHHPQLA-----MARDGNGETALHVLARKPS  346 (715)
Q Consensus       304 L~~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~~~  346 (715)
                      ||+|+..|+.+++    ++|++.+++..     +.+|..|+||||+|+..|+
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            9999999999988    99999998753     5789999999999999987

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=7.7e-33  Score=270.74  Aligned_cols=198  Identities=18%  Similarity=0.180  Sum_probs=148.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  275 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~  275 (715)
                      ..+.||||.|+..|+.+.++.|++. .+.+++.+|.+|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~   80 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAG   80 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            4566777777777777777777773 334777777777777777777777777777777777765 56777777777777


Q ss_pred             HcCCHHHHHHHH-hcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          276 LLGHKEMIWYLY-SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       276 ~~g~~~iv~~Ll-~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      ..|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++|+++++..++.+|..|+||||+|+..++.       
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~-------  153 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG-------  153 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC-------
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc-------
Confidence            777777777777 445577777777777777777777777777777777333467777788888877765431       


Q ss_pred             hhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 005095          355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  434 (715)
Q Consensus       355 ~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~  434 (715)
                                                                                  ..++.+++++|+++|++ ++
T Consensus       154 ------------------------------------------------------------~~~~~~~v~~Ll~~ga~-~~  172 (201)
T 3hra_A          154 ------------------------------------------------------------NQLYQDIVKLLMENGAD-QS  172 (201)
T ss_dssp             ------------------------------------------------------------SHHHHHHHHHHHHTTCC-TT
T ss_pred             ------------------------------------------------------------hhhHHHHHHHHHHCCCC-CC
Confidence                                                                        01247889999999999 78


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 005095          435 KVDDHSRSMFHIAVVHRQEKIFNLIYELG  463 (715)
Q Consensus       435 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  463 (715)
                      .+|..|+||||+|+.+|+.+++++|+++|
T Consensus       173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          173 IKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            88999999999999999999999999876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-33  Score=287.39  Aligned_cols=203  Identities=17%  Similarity=0.133  Sum_probs=146.6

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHhcCCCccccc----ccCCCChHHHHHHHc---CcHHHHHHHHhcCCCCCcc----
Q 005095          198 QDTALHIAAGARRTL----FVQELVNLMTPEDLAL----RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSI----  262 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~----iv~~Ll~~~~g~~i~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~----  262 (715)
                      |+||||.|+..|+.+    ++++|++  .|++++.    +|..|+||||+|+..   |+.+++++|+++|++++..    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            567777777777775    4455555  5677776    677777777777777   7777777777776654311    


Q ss_pred             ------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccc-------------cccHHHHHHHcCChhHHHHHHh--
Q 005095          263 ------RGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-------------RIELLVAVIDAGLYDVALDLIQ--  321 (715)
Q Consensus       263 ------~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~-------------g~t~L~~A~~~g~~~iv~~Ll~--  321 (715)
                            +|..|.||||+|+..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                  2356788888888888888888888888888777765             7778888887778888888887  


Q ss_pred             -hCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccc
Q 005095          322 -HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIG  400 (715)
Q Consensus       322 -~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~  400 (715)
                       +|+++ +.+|.+|+||||+|+..++.     .                           .+..+               
T Consensus       160 ~~ga~~-n~~d~~g~TpLh~A~~~~~~-----~---------------------------~~~~~---------------  191 (256)
T 2etb_A          160 HQPASL-EATDSLGNTVLHALVMIADN-----S---------------------------PENSA---------------  191 (256)
T ss_dssp             SCCCCT-TCCCTTSCCHHHHHHHHCCS-----C---------------------------HHHHH---------------
T ss_pred             ccCCCc-CccCCCCCCHHHHHHHcccC-----C---------------------------chhhH---------------
Confidence             66664 67777777777777762210     0                           00000               


Q ss_pred             ccccCCchHHHHHHHcCCHHHHHHHHHhCCCCc-------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          401 ELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI-------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       401 ~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~-------~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                               +       ..+++++|+++|++ +       +.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus       192 ---------~-------~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          192 ---------L-------VIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             ---------H-------HHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ---------H-------HHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence                     0       03488888888888 5       7889999999999999999999999999988765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.8e-32  Score=263.99  Aligned_cols=181  Identities=19%  Similarity=0.232  Sum_probs=169.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHH
Q 005095          161 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA  240 (715)
Q Consensus       161 ~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~A  240 (715)
                      ..+.||||.||..|+.+.++.|++.++.+++.. |.+|.||||+|+..|+.++|++|++  .|++++.+|..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNSISDSPYLYA   79 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHH
Confidence            357799999999999999999999888677665 8999999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCccccccccHHHHHHHcCC-----h
Q 005095          241 AVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGL-----Y  313 (715)
Q Consensus       241 a~~g~~~iv~~Ll~~g-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~-----~  313 (715)
                      +..|+.+++++|++++ +++ +.++..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++     .
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             HHcCCHHHHHHHHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence            9999999999999554 455 489999999999999999999999999999 9999999999999999999998     9


Q ss_pred             hHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          314 DVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       314 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      +++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus       159 ~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          159 DIVKLLMENGADQ-SIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCC
Confidence            9999999999996 8899999999999999886

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=1.6e-32  Score=282.31  Aligned_cols=220  Identities=13%  Similarity=0.087  Sum_probs=159.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhh---Cccchh---hccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcc-
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNL---NPEAVC---VRISRNQDTALHIAAGA---RRTLFVQELVNLMTPED-  225 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~---~~~~~~---~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~g~~-  225 (715)
                      .+..|..|+||||.||..|+.++|+.|++.   .+..++   ...|..|+||||+|+..   |+.++|++|++  .|++ 
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~--~ga~~   83 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD--VARKT   83 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH--HHHHT
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH--hhccc
Confidence            345677889999999999999999988874   222221   13478899999999987   99999999999  6665 


Q ss_pred             ------ccc----ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCC--------------CCCCHHHHHHHcCCHH
Q 005095          226 ------LAL----RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN--------------KGATPLCMAALLGHKE  281 (715)
Q Consensus       226 ------i~~----~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~--------------~g~tpLh~A~~~g~~~  281 (715)
                            ++.    +|..|.||||+|+..|+.+++++|+++|++++ .++.              .|.||||+|+..|+.+
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence                  232    56789999999999999999999999999886 5555              7889999999999999


Q ss_pred             HHHHHHh---cCCCCCccccccccHHHHHHHcCC---------hhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcc
Q 005095          282 MIWYLYS---VTKEEDLKEEDRIELLVAVIDAGL---------YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFA  349 (715)
Q Consensus       282 iv~~Ll~---~ga~~~~~~~~g~t~L~~A~~~g~---------~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~  349 (715)
                      ++++|++   +|++++.+|.+|.||||+|+..|+         .+++++|+++|+++ +..                   
T Consensus       163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~-------------------  222 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL-HPT-------------------  222 (273)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH-CTT-------------------
T ss_pred             HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc-ccc-------------------
Confidence            9999999   889998888889999999888877         57777777776654 110                   


Q ss_pred             cCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhC
Q 005095          350 SGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMY  429 (715)
Q Consensus       350 ~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~  429 (715)
                                                                    ...++.+|..|.||||+|++.|+.+++++|+++|
T Consensus       223 ----------------------------------------------~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          223 ----------------------------------------------LKLEEITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             ----------------------------------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------------------------------------cccccccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence                                                          0001234567788888888888899999999999


Q ss_pred             CCCccccCCCCCcHH
Q 005095          430 PNLIWKVDDHSRSMF  444 (715)
Q Consensus       430 ~d~~~~~d~~G~T~L  444 (715)
                      +.........+.+|-
T Consensus       257 a~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          257 IHEPECRHAAAHHHH  271 (273)
T ss_dssp             TC-------------
T ss_pred             CCCchhhhhhhhhcc
Confidence            854666666666654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=1.2e-31  Score=254.25  Aligned_cols=157  Identities=25%  Similarity=0.286  Sum_probs=146.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      ++|+.||+.|+.++|+.||+.+. +++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|.+|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Ga-dvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~--~gad~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGA-DVNAS-DSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHcCCHHHHHHHHh--cccchhhhccCCCCHHHHHHHcC
Confidence            58999999999999999998765 45554 8999999999999999999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCc
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  324 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  324 (715)
                      +.+++++|+++|++++ .+|.+|+||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           82 HKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999996 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 005095          325 QL  326 (715)
Q Consensus       325 ~~  326 (715)
                      ++
T Consensus       161 ~i  162 (169)
T 4gpm_A          161 WL  162 (169)
T ss_dssp             --
T ss_pred             Cc
Confidence            86

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.1e-32  Score=281.51  Aligned_cols=229  Identities=14%  Similarity=0.130  Sum_probs=169.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCcccc----cccCCCChHHHHHHHc---CcHHHHHHHHhcCCCCCc---
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLM--TPEDLA----LRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPS---  261 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~g~~i~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~---  261 (715)
                      .|..|+||||+|++.|+.++|+.|++..  .+++++    .+|..|+||||+|+..   |+.+++++|+++|++...   
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            3788999999999999999888888621  355554    4578899999999976   899999999998765311   


Q ss_pred             -------cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCC
Q 005095          262 -------IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNG  334 (715)
Q Consensus       262 -------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  334 (715)
                             .+|..|.||||+|+..|+.++|++|+++|++++.++..+..                   ...+ ....+..|
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~-~~~~~~~g  148 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-------------------KKTK-GRPGFYFG  148 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------SSCS-SSCCCCSC
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------cccc-ccccccCC
Confidence                   25668899999999999999999999999988888765511                   0011 24456789


Q ss_pred             CCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHH
Q 005095          335 ETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAV  414 (715)
Q Consensus       335 ~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~  414 (715)
                      +||||+|+..|+                                  .+++++|++..  ..+.+++.+|..|.||||+|+
T Consensus       149 ~tpL~~A~~~g~----------------------------------~~~v~~Ll~~~--~~gad~~~~d~~g~tpLh~A~  192 (273)
T 2pnn_A          149 ELPLSLAACTNQ----------------------------------LAIVKFLLQNS--WQPADISARDSVGNTVLHALV  192 (273)
T ss_dssp             BSHHHHHHHTTC----------------------------------HHHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCC----------------------------------HHHHHHHHhcc--cCCCCceeeCCCCCcHHHHHH
Confidence            999999999886                                  36667766510  036778888999999999999


Q ss_pred             HcCC---------HHHHHHHHHhCCCCc------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCc-chhhhhcccCCCCc
Q 005095          415 ELGN---------VEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGA-HKDLIASYKDENNN  478 (715)
Q Consensus       415 ~~g~---------~eiv~~Ll~~~~d~~------~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga-~~~~l~~~~d~~G~  478 (715)
                      ..|+         .+++++|+++|+++.      +.+|..|+||||+|+..|+.+++++|+++|+ |+..    ....+.
T Consensus       193 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~----~~~~~~  268 (273)
T 2pnn_A          193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC----RHAAAH  268 (273)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh----hhhhhh
Confidence            9988         899999999998832      3589999999999999999999999999999 6653    556666


Q ss_pred             hHHH
Q 005095          479 NMLH  482 (715)
Q Consensus       479 TpLh  482 (715)
                      +|-|
T Consensus       269 ~~~~  272 (273)
T 2pnn_A          269 HHHH  272 (273)
T ss_dssp             ----
T ss_pred             hccC
Confidence            5543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4.1e-31  Score=250.65  Aligned_cols=94  Identities=28%  Similarity=0.374  Sum_probs=57.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 005095          201 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       201 pLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      +|+.||+.|+.++|+.||+  .|+|+|.+|.+|+||||+|+..++.+++++|+++|++++ .+|.+|.||||+|+..|+.
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCH
Confidence            5666666666666666666  566666666666666666666666666666666666654 5566666666666666666


Q ss_pred             HHHHHHHhcCCCCCccc
Q 005095          281 EMIWYLYSVTKEEDLKE  297 (715)
Q Consensus       281 ~iv~~Ll~~ga~~~~~~  297 (715)
                      ++|++|+++|+++|.+|
T Consensus        84 ~~v~~Ll~~gadvn~~d  100 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKD  100 (169)
T ss_dssp             HHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHCcCCCCCCC
Confidence            66666666555544333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=7.2e-32  Score=274.66  Aligned_cols=181  Identities=16%  Similarity=0.133  Sum_probs=160.5

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHhhCccchhh---ccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccc---
Q 005095          162 TSYAPLHLAALKGDWD----FARNFFNLNPEAVCV---RISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLAL---  228 (715)
Q Consensus       162 ~g~T~Lh~Aa~~g~~~----~v~~LL~~~~~~~~~---~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~g~~i~~---  228 (715)
                      .|+||||.||..|+.+    ++++|++.+. +++.   ..|..|+||||+|+..   |+.++|++|++  .|++++.   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~-~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK-YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ--IDKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH--HHHHTTCSSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC-CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh--cCCcccchhh
Confidence            3789999999999998    4555555544 4444   2489999999999999   99999999999  7887763   


Q ss_pred             --------ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCC-------------CCCHHHHHHHcCCHHHHHHHH
Q 005095          229 --------RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-------------GATPLCMAALLGHKEMIWYLY  287 (715)
Q Consensus       229 --------~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll  287 (715)
                              +|..|.||||+|+..|+.+++++|+++|++++ .++..             |.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                    34789999999999999999999999999986 56665             999999999999999999999


Q ss_pred             h---cCCCCCccccccccHHHHHHH--cCChh-------HHHHHHhhCcccc------eecCCCCCCHHHHHHhCCC
Q 005095          288 S---VTKEEDLKEEDRIELLVAVID--AGLYD-------VALDLIQHHPQLA------MARDGNGETALHVLARKPS  346 (715)
Q Consensus       288 ~---~ga~~~~~~~~g~t~L~~A~~--~g~~~-------iv~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~~~  346 (715)
                      +   +|++++.+|.+|.||||+|+.  .++.+       ++++|+++|+++.      +.+|..|+||||+|+..|+
T Consensus       157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence            9   999999999999999999999  88888       9999999998852      7889999999999999987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.1e-31  Score=273.97  Aligned_cols=206  Identities=15%  Similarity=0.054  Sum_probs=130.4

Q ss_pred             CCCCcHHHHHHHcCCHHH----HHHHHhcCCCccccccc----CCCChHHHHHH---HcCcHHHHHHHHhcCCCC-----
Q 005095          196 RNQDTALHIAAGARRTLF----VQELVNLMTPEDLALRN----KVGNTALCFAA---VSGVTKIAEVMVNKNREL-----  259 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~i----v~~Ll~~~~g~~i~~~d----~~G~TpLh~Aa---~~g~~~iv~~Ll~~g~~~-----  259 (715)
                      ..|+||||.|++.|+.+.    +++|++  .+++++..+    ..|.||||+|+   +.|+.+++++|+++|++.     
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLT--HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            344555555555555552    333333  344444433    44555555555   445555555555554321     


Q ss_pred             -----CccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc--------------cccccHHHHHHHcCChhHHHHHH
Q 005095          260 -----PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--------------EDRIELLVAVIDAGLYDVALDLI  320 (715)
Q Consensus       260 -----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~--------------~~g~t~L~~A~~~g~~~iv~~Ll  320 (715)
                           ....|..|.||||+|+..|+.++|++|+++|++++..+              ..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                 11234466777777777777777777777777777666              46777777777777777777777


Q ss_pred             h---hCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcc
Q 005095          321 Q---HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDS  397 (715)
Q Consensus       321 ~---~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~  397 (715)
                      +   .++++ +.+|.+|+||||+|+..++..     .                           +..             
T Consensus       161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~-----~---------------------------~~~-------------  194 (260)
T 3jxi_A          161 ENGHKQADL-RRQDSRGNTVLHALVAIADNT-----R---------------------------ENT-------------  194 (260)
T ss_dssp             HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSS-----H---------------------------HHH-------------
T ss_pred             hccccCCCC-cccCCCCCcHHHHHHHhccCc-----h---------------------------hHH-------------
Confidence            7   66664 677788888888888654310     0                           000             


Q ss_pred             cccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCc------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          398 KIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       398 ~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~------~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                                        ....+++++|+++|+++.      +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       195 ------------------~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          195 ------------------KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                              012467778888877721      6788999999999999999999999999988765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.6e-30  Score=247.75  Aligned_cols=170  Identities=18%  Similarity=0.165  Sum_probs=154.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      +.||||.||..|+.+++++|++.++..++.. |..|.||||+|+..|+.++|++|++  .|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCchhhcccCCCHHHHHHH
Confidence            4589999999999999999999887766664 8999999999999999999999999  799999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            999999999999999986 7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceecCCCCCCH
Q 005095          323 HPQLAMARDGNGETA  337 (715)
Q Consensus       323 ~~~~~~~~d~~g~tp  337 (715)
                      +++. ..++..|.||
T Consensus       158 ~~~~-~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKL-FQSNLVPADP  171 (172)
T ss_dssp             HHHH-SCC-------
T ss_pred             HHHH-hcccCCCCCC
Confidence            9986 6677777776

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.1e-30  Score=266.56  Aligned_cols=183  Identities=17%  Similarity=0.150  Sum_probs=159.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHh----hCccchhhc---cCCCCCcHHHHHH---HcCCHHHHHHHHhcCCCcc----
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFN----LNPEAVCVR---ISRNQDTALHIAA---GARRTLFVQELVNLMTPED----  225 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~----~~~~~~~~~---~d~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~g~~----  225 (715)
                      +..|+|+||.||..|+.+.++.|++    .+.. ++..   .|..|+||||+|+   ..|+.++|++|++  .|++    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD--IAEKTGNM   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH--HHHHTTCH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH--hcccccch
Confidence            3457899999999999997666665    4433 3322   2477999999999   7799999999999  5644    


Q ss_pred             -------cccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCC--------------CCCCCHHHHHHHcCCHHHHH
Q 005095          226 -------LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRG--------------NKGATPLCMAALLGHKEMIW  284 (715)
Q Consensus       226 -------i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~  284 (715)
                             ++.+|..|+||||+|+..|+.++|++|+++|++++ .++              ..|.||||+|+..|+.++|+
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  157 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVH  157 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHH
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHH
Confidence                   45556699999999999999999999999999987 566              68999999999999999999


Q ss_pred             HHHh---cCCCCCccccccccHHHHHHHcCC---------hhHHHHHHhhCcccc------eecCCCCCCHHHHHHhCCC
Q 005095          285 YLYS---VTKEEDLKEEDRIELLVAVIDAGL---------YDVALDLIQHHPQLA------MARDGNGETALHVLARKPS  346 (715)
Q Consensus       285 ~Ll~---~ga~~~~~~~~g~t~L~~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~~~  346 (715)
                      +|++   +|++++.+|..|.||||+|+..++         .+++++|+++|+++.      +.+|.+|+||||+|+..|+
T Consensus       158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            9999   999999999999999999999888         799999999998852      5789999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=4.8e-32  Score=289.82  Aligned_cols=269  Identities=12%  Similarity=0.054  Sum_probs=155.4

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchh-hccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---cccccCC
Q 005095          157 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC-VRISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKV  232 (715)
Q Consensus       157 ~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~-~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~---i~~~d~~  232 (715)
                      ...+.+++||||+||..|+.++|++|++.+..... ...+..|.||||+||..|+.++|++|++  +|++   .+..+.+
T Consensus        86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~  163 (376)
T 2aja_A           86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN  163 (376)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH
T ss_pred             HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC
Confidence            34455666777777777777777777766542110 0123456677777777777777777777  5653   1222222


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCc-cCCCCCCCHHHHHH-HcCCHHHHHHHHhcCCCCCccccccccHHHHHHHc
Q 005095          233 GNTALCFAAVSGVTKIAEVMVNKNRELPS-IRGNKGATPLCMAA-LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA  310 (715)
Q Consensus       233 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~-~~d~~g~tpLh~A~-~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~  310 (715)
                       .||||+|+..|+.++|++|+++|++++. ..|..|.||||+|+ ..|+.++|++|+++|+       .|.||||.|+.+
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~  235 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEY  235 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTT
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHC
Confidence             7777777777777777777777776541 15666777777777 7777777777777664       267777777777


Q ss_pred             CChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHH
Q 005095          311 GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQ  390 (715)
Q Consensus       311 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~  390 (715)
                      |+.+++++|++++++. +..+    ++++.|+..|+......                      .-.......++.++.+
T Consensus       236 g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~----------------------~~~~~~~~~~~~li~~  288 (376)
T 2aja_A          236 GEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTK----------------------SECLQGFYMLRNLIRR  288 (376)
T ss_dssp             TTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSH----------------------HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcH----------------------HhhhhhHHHHHHHHHc
Confidence            7777777777777664 3322    35666666664211100                      0000011122222221


Q ss_pred             HHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCC----ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcch
Q 005095          391 VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL----IWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  466 (715)
Q Consensus       391 ~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~----~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~  466 (715)
                                             ...+..+.+++|++.+..-    .....+.+.||||+|+..|+.+++++|++.|.  
T Consensus       289 -----------------------~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~--  343 (376)
T 2aja_A          289 -----------------------NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS--  343 (376)
T ss_dssp             -----------------------CCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH--
T ss_pred             -----------------------chhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH--
Confidence                                   1123467777777643210    11223467799999999999999999998763  


Q ss_pred             hhhhcccCCCCchHHHHhhhhCCCCc
Q 005095          467 DLIASYKDENNNNMLHLAGKLAPPDR  492 (715)
Q Consensus       467 ~~l~~~~d~~G~TpLh~A~~~~~~~~  492 (715)
                           .+|..|+||+.+|-+.|+.+.
T Consensus       344 -----v~~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          344 -----VLALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             -----HHHSCC---------------
T ss_pred             -----HHHHHHHhccccccccccccH
Confidence                 267889999999998887653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.5e-29  Score=245.75  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=153.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCh
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT  235 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~T  235 (715)
                      ++.+|..|+||||+|+..|+.+++++|++.+. +++. .|..|.||||+|+..|+.+++++|++  .|++++.+|..|.|
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t  103 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLED-KDIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDFSGKT  103 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTSCC
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccc-ccccCccHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCc
Confidence            56688899999999999999999999998754 3444 38899999999999999999999999  79999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhH
Q 005095          236 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV  315 (715)
Q Consensus       236 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~i  315 (715)
                      |||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence            9999999999999999999999986 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 005095          316 ALDLIQHH  323 (715)
Q Consensus       316 v~~Ll~~~  323 (715)
                      +++|++.+
T Consensus       183 v~~Ll~~~  190 (192)
T 2rfm_A          183 IKIFTEVR  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.3e-29  Score=237.41  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=151.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHH
Q 005095          162 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA  241 (715)
Q Consensus       162 ~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa  241 (715)
                      .|.||||.|+..|+.+++++|++.+.. ++.. |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHT-DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCC-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCcCCCCCcHHHHHH
Confidence            478999999999999999999988643 4444 8899999999999999999999999  89999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHh
Q 005095          242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  321 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  321 (715)
                      ..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999986 789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCccc
Q 005095          322 HHPQL  326 (715)
Q Consensus       322 ~~~~~  326 (715)
                      ++++.
T Consensus       157 ~~~~~  161 (167)
T 3v31_A          157 HLLKL  161 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=261.01  Aligned_cols=179  Identities=17%  Similarity=0.184  Sum_probs=164.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-ccccccCCCChHHHHHH-
Q 005095          164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE-DLALRNKVGNTALCFAA-  241 (715)
Q Consensus       164 ~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~-~i~~~d~~G~TpLh~Aa-  241 (715)
                      ++++|.|+..|+.+.++.+++..........|.+|+||||+|+..|+.++|++|++  .|+ +++.+|..|.||||+|+ 
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TSCCCTTCCCTTSCCHHHHGGG
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCCCCCCCCCCHHHHHHH
Confidence            47899999999999999998776554344458999999999999999999999999  787 99999999999999999 


Q ss_pred             ----HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHH
Q 005095          242 ----VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL  317 (715)
Q Consensus       242 ----~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~  317 (715)
                          ..++.+++++|++.|.+.. ..+..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.++++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                6789999999999998775 78889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-hCcccceecCCCCCCHHHHHHhCCC
Q 005095          318 DLIQ-HHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       318 ~Ll~-~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      +|++ .++++ +.+|.+|+||||+|+..|+
T Consensus       234 ~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          234 LLLAVPSCDI-SLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             HHHTSTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHhcCCCCC-cCcCCCCCCHHHHHHHcCC
Confidence            9999 78775 8899999999999999886

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.1e-31  Score=286.99  Aligned_cols=259  Identities=15%  Similarity=0.094  Sum_probs=168.1

Q ss_pred             cccccccCCCCCC------------cccccCCCCCChHHHHHHHcCCHHHHHHHHhhCcc----chhhccCCCCCcHHHH
Q 005095          141 QPAVSLSQPGAVS------------GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPE----AVCVRISRNQDTALHI  204 (715)
Q Consensus       141 ~~~~~l~~~G~~~------------~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~----~~~~~~d~~g~TpLh~  204 (715)
                      +|++.|+..|+..            ...+..+..|+||||+||..|+.++|++|++.+++    .+..   .+ .||||+
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~---~~-~TpLh~  169 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA---EN-YHAFRL  169 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH---HH-HHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC---CC-CCHHHH
Confidence            5666666666532            12224455688999999999999999999988753    2322   22 999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccccc--ccCCCChHHHHHH-HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Q 005095          205 AAGARRTLFVQELVNLMTPEDLAL--RNKVGNTALCFAA-VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE  281 (715)
Q Consensus       205 Aa~~g~~~iv~~Ll~~~~g~~i~~--~d~~G~TpLh~Aa-~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~  281 (715)
                      ||..|+.++|++|++  +|++++.  +|..|.||||+|+ ..|+.++|++|+++|+        .|.||||+|+..|+.+
T Consensus       170 Aa~~G~~eiv~~Ll~--~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          170 AAENGHLHVLNRLCE--LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHTTCHHHHHHHHH--SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTT
T ss_pred             HHHCCCHHHHHHHHH--cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHH
Confidence            999999999999999  8999888  8999999999999 9999999999999774        2889999999999999


Q ss_pred             HHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhh
Q 005095          282 MIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCI  361 (715)
Q Consensus       282 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll  361 (715)
                      ++++|+++|++++..+    ++++.|+.+|+.++++..-...          +...+......+..    ..        
T Consensus       240 vv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~----------~~~~~~~li~~~~~----~~--------  293 (376)
T 2aja_A          240 VNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDE----VL--------  293 (376)
T ss_dssp             HHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHH----------HHHHHHHHHHHCCG----GG--------
T ss_pred             HHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhh----------hHHHHHHHHHcchh----hH--------
Confidence            9999999999876554    4788899999888653211000          00011111111110    01        


Q ss_pred             hcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q 005095          362 YSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR  441 (715)
Q Consensus       362 ~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~  441 (715)
                                         .+.+++|++..........+.....+.||||+|++.|+.+++++|++.+    ..+|..|+
T Consensus       294 -------------------~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~  350 (376)
T 2aja_A          294 -------------------LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKA  350 (376)
T ss_dssp             -------------------HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC-
T ss_pred             -------------------HHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHH
Confidence                               2344444432110000111112235679999999999999999999753    56788999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHc
Q 005095          442 SMFHIAVVHRQEKIFNLIYEL  462 (715)
Q Consensus       442 T~Lh~A~~~~~~~iv~~Ll~~  462 (715)
                      |++.+|-..|+.++.+.-+++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          351 NNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             ---------------------
T ss_pred             hccccccccccccHHHHHHHH
Confidence            999999999999998876543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.7e-31  Score=264.55  Aligned_cols=194  Identities=19%  Similarity=0.098  Sum_probs=169.7

Q ss_pred             ccCCCCCCcccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Q 005095          146 LSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED  225 (715)
Q Consensus       146 l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~  225 (715)
                      +.+.|..++..+..+.+|.||||.||..|+.+++++|++.+. +++. .|..|+||||+|+..|+.++|++|++  .|++
T Consensus         4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga~   79 (229)
T 2vge_A            4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQ-PNEEGITALHNAICGANYSIVDFLIT--AGAN   79 (229)
T ss_dssp             ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-CTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC
T ss_pred             hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC
Confidence            556788788888889999999999999999999999998765 4444 48999999999999999999999999  8999


Q ss_pred             cccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHhcCCCCCccccccccH
Q 005095          226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYSVTKEEDLKEEDRIEL  303 (715)
Q Consensus       226 i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  303 (715)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++...+..|.||||+|  +..|+.+++++|+++|++++.++..|.||
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            9999999999999999999999999999999999744457999999999  99999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHhhCccc-ceecCCCCCCHHHHHHhCCC
Q 005095          304 LVAVIDAGLYDVALDLIQHHPQL-AMARDGNGETALHVLARKPS  346 (715)
Q Consensus       304 L~~A~~~g~~~iv~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~~~  346 (715)
                      ++.++..+..   +.|++.+++. .+.+|.+|+||||+|+..|+
T Consensus       160 l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          160 LWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             SSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             HHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCC
Confidence            9976555433   5778888874 47889999999999999986

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=260.86  Aligned_cols=190  Identities=17%  Similarity=0.245  Sum_probs=165.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcc--cccccCCCChHHHHHHHcCcHHHHHHHHhcCC-CCCccCCCCCCCHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPED--LALRNKVGNTALCFAAVSGVTKIAEVMVNKNR-ELPSIRGNKGATPLCM  273 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~--i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~-~~~~~~d~~g~tpLh~  273 (715)
                      .+.+++|.|+..|+.+.++.+++  .+.+  +|.+|.+|+||||+|+..|+.+++++|+++|+ ++ +.+|..|.||||+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~  151 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSA--RLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIML  151 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCH--HHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHH--HHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHH
Confidence            34678999999999999999988  4444  89999999999999999999999999999998 55 4899999999999


Q ss_pred             HH-----HcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCc
Q 005095          274 AA-----LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF  348 (715)
Q Consensus       274 A~-----~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~  348 (715)
                      |+     ..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|++.|+++ +.+|.+|              
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G--------------  216 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDG--------------  216 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS--------------
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCC--------------
Confidence            99     678899999999999999888999999999999999999999999988774 5555444              


Q ss_pred             ccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHH-
Q 005095          349 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-  427 (715)
Q Consensus       349 ~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~-  427 (715)
                                                                                .||||+|+..|+.+++++|++ 
T Consensus       217 ----------------------------------------------------------~TpLh~A~~~g~~~iv~~Ll~~  238 (276)
T 4hbd_A          217 ----------------------------------------------------------STALMCACEHGHKEIAGLLLAV  238 (276)
T ss_dssp             ----------------------------------------------------------CCHHHHHHHHTCHHHHHHHHTS
T ss_pred             ----------------------------------------------------------CCHHHHHHHCCCHHHHHHHHhc
Confidence                                                                      555555666678899999999 


Q ss_pred             hCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 005095          428 MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELG  463 (715)
Q Consensus       428 ~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  463 (715)
                      .|++ ++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       239 ~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          239 PSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            7888 7889999999999999999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.4e-29  Score=237.86  Aligned_cols=161  Identities=25%  Similarity=0.197  Sum_probs=148.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHH
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      .+..|.||||.|+..|+.+++++|++..+...... +..|.||||+|+..|+.+++++|++  .|++++.+|..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHh--cCCCCCccCCCCCCHHH
Confidence            35668899999999999999999998776655544 7889999999999999999999999  89999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHH
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  318 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~  318 (715)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+. ++.+++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence            9999999999999999999986 789999999999999999999999999999999999999999999877 99999999


Q ss_pred             HHhhCc
Q 005095          319 LIQHHP  324 (715)
Q Consensus       319 Ll~~~~  324 (715)
                      |+++|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            998875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=5.9e-29  Score=238.60  Aligned_cols=167  Identities=13%  Similarity=0.078  Sum_probs=155.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHH
Q 005095          162 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA  241 (715)
Q Consensus       162 ~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa  241 (715)
                      .+.++||.||..|+.+++++|++..+.+++.. |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCCHHHHHH
Confidence            46789999999999999999999877777665 8999999999999999999999999  89999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHh
Q 005095          242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  321 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  321 (715)
                      ..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|++
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCcccceecCCC
Q 005095          322 HHPQLAMARDGN  333 (715)
Q Consensus       322 ~~~~~~~~~d~~  333 (715)
                      .++++ +..+..
T Consensus       160 ~g~~~-~~~~~~  170 (179)
T 3f6q_A          160 MGQNL-NRIPYK  170 (179)
T ss_dssp             TTCCC-SCBCCC
T ss_pred             hhcCc-ccCCcc
Confidence            99986 444433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.1e-28  Score=232.31  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=146.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      ..||||.|+..|+.+++++|++.+. +++.. |..|+||||+|+. |+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNV-NVNAQ-NGFGRTALQVMKL-GNPEIARRLLL--RGANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCC-CTTSCCHHHHCCS-SCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCC-Ccccc-CccCccHHHHHHc-CcHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHH
Confidence            4599999999999999999997654 44443 8899999999999 99999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCccccccccHHHHHHHcCChhHHHHHHh
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE-EDLKEEDRIELLVAVIDAGLYDVALDLIQ  321 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  321 (715)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999986 7899999999999999999999999999998 59999999999999999999999999999


Q ss_pred             hCcc
Q 005095          322 HHPQ  325 (715)
Q Consensus       322 ~~~~  325 (715)
                      +|++
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            9874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.1e-28  Score=232.51  Aligned_cols=159  Identities=25%  Similarity=0.235  Sum_probs=147.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHH
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF  239 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~  239 (715)
                      ...+.|+||.||..|+.+++++|++.+. +++.. |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGA-DVNAE-DASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHH
Confidence            4456799999999999999999998754 44443 8899999999999999999999999  899999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          240 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       240 Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      |+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            999999999999999999986 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhC
Q 005095          320 IQHH  323 (715)
Q Consensus       320 l~~~  323 (715)
                      ++.|
T Consensus       166 ~~~G  169 (169)
T 2y1l_E          166 QKLN  169 (169)
T ss_dssp             HTC-
T ss_pred             HHcC
Confidence            9864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.3e-28  Score=234.46  Aligned_cols=168  Identities=15%  Similarity=0.127  Sum_probs=97.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcc-cccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 005095          199 DTALHIAAGARRTLFVQELVNLMTPED-LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  277 (715)
Q Consensus       199 ~TpLh~Aa~~g~~~iv~~Ll~~~~g~~-i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~  277 (715)
                      .||||.|+..|+.++++.|++  .+.+ ++.+|..|+||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLR--KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTG   79 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHT--TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHT
T ss_pred             hhhHHHHHHcCCHHHHHHHHH--cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHC
Confidence            455666666666666666655  3333 55555555555555555555555555555555553 4555555555555555


Q ss_pred             CCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhH
Q 005095          278 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW  357 (715)
Q Consensus       278 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  357 (715)
                      |+.+++++|+++|++++.+                                  |..                        
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~----------------------------------~~~------------------------  101 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIY----------------------------------DWN------------------------  101 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCC----------------------------------CTT------------------------
T ss_pred             CCHHHHHHHHHcCCCCCCC----------------------------------CCC------------------------
Confidence            5555555555555443332                                  222                        


Q ss_pred             hhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q 005095          358 RRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD  437 (715)
Q Consensus       358 ~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d  437 (715)
                                                                      |.||||+|+..|+.+++++|+++|++ ++.+|
T Consensus       102 ------------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~  132 (172)
T 3v30_A          102 ------------------------------------------------GGTPLLYAVRGNHVKCVEALLARGAD-LTTEA  132 (172)
T ss_dssp             ------------------------------------------------SCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             ------------------------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCC-ccccC
Confidence                                                            33444445555666777777777777 66777


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchH
Q 005095          438 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNM  480 (715)
Q Consensus       438 ~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~Tp  480 (715)
                      ..|+||||+|+..|+.+++++|+++|++..    .++..|.||
T Consensus       133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~----~~~~~~~~p  171 (172)
T 3v30_A          133 DSGYTPMDLAVALGYRKVQQVIENHILKLF----QSNLVPADP  171 (172)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHHHHHS----CC-------
T ss_pred             CCCCCHHHHHHHhCcHHHHHHHHHHHHHHh----cccCCCCCC
Confidence            778888888888888888888888777765    366777666

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.2e-28  Score=228.14  Aligned_cols=151  Identities=23%  Similarity=0.152  Sum_probs=143.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      ..||||.|+..|+.+++++|++.+....   .+..|.||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHH
Confidence            3589999999999999999999876432   37899999999999999999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999986 7899999999999999999999999999999999999999999999999999999887

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=9e-31  Score=261.78  Aligned_cols=199  Identities=12%  Similarity=0.082  Sum_probs=124.1

Q ss_pred             HHHHhcCCCcccccc---cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 005095          215 QELVNLMTPEDLALR---NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK  291 (715)
Q Consensus       215 ~~Ll~~~~g~~i~~~---d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga  291 (715)
                      +.|++  +|++++..   +..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+
T Consensus         2 ~~ll~--~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            2 RSVLR--KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eehhc--cCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            44555  45554433   2344556666666666666666666666654 566666666666666666666666666666


Q ss_pred             CCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecC-CCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhc
Q 005095          292 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD-GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAI  370 (715)
Q Consensus       292 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  370 (715)
                      +++.+|..|.||||+|+..|+.+++++|++.|+++ +.++ .+|+||||+|+.                           
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a---------------------------  130 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDP---------------------------  130 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCT---------------------------
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHH---------------------------
Confidence            66666666666666666666666666666666654 3332 455555555410                           


Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHh
Q 005095          371 LDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH  450 (715)
Q Consensus       371 ~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~  450 (715)
                                                                 +..|+.+++++|+++|++ ++.+|..|.||+|.++..
T Consensus       131 -------------------------------------------~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A          131 -------------------------------------------YREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             -------------------------------------------TSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCS
T ss_pred             -------------------------------------------HhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhc
Confidence                                                       334566777777777777 666777777777755444


Q ss_pred             CCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCcc
Q 005095          451 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL  493 (715)
Q Consensus       451 ~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l  493 (715)
                      +.   .++|++.|+++++  +.+|.+|+||||+|++.|+.+.+
T Consensus       167 ~~---~~~ll~~ga~~~~--~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          167 FG---DELSFREGESVTV--LRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             ST---TBCCBCTTCEEEE--EESSCTTCSSEEEEEETTEEEEE
T ss_pred             cc---cccCccccccccc--cccCCCcccHHHHHHHcCCccee
Confidence            32   3577888888654  46899999999999999987643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.7e-28  Score=236.81  Aligned_cols=149  Identities=21%  Similarity=0.235  Sum_probs=144.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM  273 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~  273 (715)
                      +|..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~  107 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMW  107 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence            48999999999999999999999999  799999999999999999999999999999999999986 789999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          274 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       274 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999996 8899999999999999986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.7e-28  Score=228.23  Aligned_cols=154  Identities=20%  Similarity=0.239  Sum_probs=145.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      |.||||.|+..|+.+++++|++..+.+++.. |..|.||||+ +..|+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLK--QGASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHH
Confidence            5689999999999999999998844455554 8899999999 99999999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ ++++.++.+|.||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999986 7899999999999999999999999999 99999999999999999999999999999975

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.9e-28  Score=230.76  Aligned_cols=145  Identities=18%  Similarity=0.188  Sum_probs=128.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 005095          196 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  275 (715)
Q Consensus       196 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~  275 (715)
                      ....||||.|+..|+.+++++|++  .|++++.+|..|+||||+|+. |+.+++++|+++|++++ .+|..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            356799999999999999999999  899999999999999999999 99999999999999986 78999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhC
Q 005095          276 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK  344 (715)
Q Consensus       276 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  344 (715)
                      ..|+.+++++|+++|++++.++.+|.||||+|+..|+.+++++|++++++..+.+|..|+||||+|+..
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY  147 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998875455555555555554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=8.8e-28  Score=227.52  Aligned_cols=146  Identities=12%  Similarity=0.180  Sum_probs=141.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~  276 (715)
                      .|.||||.|+..|+.+++++|++  .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHH
Confidence            58899999999999999999999  799999999999999999999999999999999999986 789999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999999986 8899999999999999886

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.1e-27  Score=224.37  Aligned_cols=148  Identities=24%  Similarity=0.292  Sum_probs=141.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      ...+.||||.||+.|+.++|++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHH
Confidence            4567899999999999999999999  899999999999999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999996 8899999999999999886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.3e-28  Score=247.87  Aligned_cols=216  Identities=14%  Similarity=0.153  Sum_probs=108.3

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcC
Q 005095          232 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  311 (715)
Q Consensus       232 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  311 (715)
                      .|.||||.|++.|+.++++.|+++|++++  .+..|.||||.|+..|+.++|++|+++|++++.+|..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            34555555555555555555555555443  1234455555555555555555555555555555555555555555555


Q ss_pred             ChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHH
Q 005095          312 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV  391 (715)
Q Consensus       312 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~  391 (715)
                      +.+++++|+++++++ +.+|.+|+                                                        
T Consensus        82 ~~~~v~~Ll~~ga~~-~~~d~~g~--------------------------------------------------------  104 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNV-NAADSDGW--------------------------------------------------------  104 (239)
T ss_dssp             CHHHHHHHHHHTCCT-TCCCTTCC--------------------------------------------------------
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCC--------------------------------------------------------
Confidence            555555555554443 33333333                                                        


Q ss_pred             HhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC-cHHHHH--HHhCCHHHHHHHHHcCcchhh
Q 005095          392 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR-SMFHIA--VVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       392 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~-T~Lh~A--~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                                      ||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+|  +..|+.+++++|+++|++++.
T Consensus       105 ----------------tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          105 ----------------TPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             ----------------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred             ----------------CHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence                            344444445566777777777777 556665555 888887  677788888888888877764


Q ss_pred             hh-----cccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhcchhHhhhhcCCCCchhhhHH
Q 005095          469 IA-----SYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSE  538 (715)
Q Consensus       469 l~-----~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~~~~~~~~n~~G~Tpl~~a~~  538 (715)
                      ..     ...|..|.||++++.+.|..-.++...+...     ..|.+          ....++.|.+|..+...
T Consensus       168 ~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~-----~~Ww~----------~~~~~~~G~~P~~yv~~  227 (239)
T 1ycs_B          168 MNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDE-----IEWWW----------ARLNDKEGYVPRNLLGL  227 (239)
T ss_dssp             TGGGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSC-----SSEEE----------EEETTEEEEEEGGGEEC
T ss_pred             cccceEEEEeccCCCCCCcccccCCCEEEEEEecCCCC-----CCEEE----------EEECCcEEEeehHHeeE
Confidence            21     1238889999999999887544444333220     01210          13467789999887643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.2e-28  Score=246.31  Aligned_cols=179  Identities=15%  Similarity=0.061  Sum_probs=135.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHH
Q 005095          161 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA  240 (715)
Q Consensus       161 ~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~A  240 (715)
                      ..|.||||.|+..|+.+.++.|++.+.+. +.  +..|.||||.|+..|+.++|++|++  .|++++.+|..|+||||+|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~--~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF--NPLPLALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCc-cc--CchhhHHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHH
Confidence            46899999999999999999999876543 32  5789999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccc-cHHHHH--HHcCChhHHH
Q 005095          241 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI-ELLVAV--IDAGLYDVAL  317 (715)
Q Consensus       241 a~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~-t~L~~A--~~~g~~~iv~  317 (715)
                      +..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|. ||||.|  +..|+.++++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            99999999999999999986 7999999999999999999999999999999999998877 999999  8889999999


Q ss_pred             HHHhhCcccceec---------CCCCCCHHHHHHhCCC
Q 005095          318 DLIQHHPQLAMAR---------DGNGETALHVLARKPS  346 (715)
Q Consensus       318 ~Ll~~~~~~~~~~---------d~~g~tpLh~A~~~~~  346 (715)
                      +|++++++. +..         +..+.+|++++...|.
T Consensus       157 ~Ll~~~a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          157 FLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHT-TTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHhhhcc-cccccceEEEEeccCCCCCCcccccCCC
Confidence            999998774 332         6678899998888775

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.9e-27  Score=225.89  Aligned_cols=146  Identities=18%  Similarity=0.211  Sum_probs=132.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      +.++.+|||.|+..|+.++|++|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   79 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLA   79 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHH
Confidence            35688999999999999999999995 478899999999999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHh
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKA  147 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999885 7778888887777664

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=5.9e-27  Score=218.47  Aligned_cols=144  Identities=21%  Similarity=0.178  Sum_probs=137.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  277 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~  277 (715)
                      ..||||.|++.|+.+++++|++  .|++++ .|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence            4589999999999999999999  788876 58899999999999999999999999999986 7899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          278 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       278 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999996 8899999999999999986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.2e-26  Score=216.93  Aligned_cols=144  Identities=20%  Similarity=0.202  Sum_probs=137.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  277 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~  277 (715)
                      +.||||.|+..|+.+++++|++. .+.+++.+|..|.||||+ +..|+.+++++|+++|++++ .+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHc
Confidence            56899999999999999999995 466999999999999999 99999999999999999986 7999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          278 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       278 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++. +.+|.+|.||||+|+..|+
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCC
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCc
Confidence            999999999999999999999999999999999999999999999 664 8899999999999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=6.4e-27  Score=221.08  Aligned_cols=146  Identities=21%  Similarity=0.238  Sum_probs=138.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |.+|.||||.|++.|+.++++.|++. .+.+++..+..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHH
Confidence            67789999999999999999999986 577888899999999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHh
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+.
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc
Confidence            9999999999999999999999999999999999999999999999999986 8999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=7.1e-27  Score=225.23  Aligned_cols=157  Identities=14%  Similarity=0.047  Sum_probs=141.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccccCCCChHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT----LFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      ++++||.||+.|+.+.++.+++.+...   ..+..|+||||+|+..|+.    +++++|++  +|+++|.+|.+|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNNDEARYKISMFLIN--KGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCCSSCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCCCCCCCCCCCcHHH
Confidence            568999999999999999999775432   2136799999999999985    59999999  89999999999999999


Q ss_pred             HHHHcCc------HHHHHHHHhcCCCCCccCCCCCC-CHHHHHHHcC-----CHHHHHHHHh-cCCCCCccccccccHHH
Q 005095          239 FAAVSGV------TKIAEVMVNKNRELPSIRGNKGA-TPLCMAALLG-----HKEMIWYLYS-VTKEEDLKEEDRIELLV  305 (715)
Q Consensus       239 ~Aa~~g~------~~iv~~Ll~~g~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~ga~~~~~~~~g~t~L~  305 (715)
                      +|+..|+      .+++++|+++|++++ .+|..|. ||||+|+..+     +.+++++|++ +|++++.+|..|.||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9999987      689999999999997 8999999 9999999944     4679999999 99999999999999999


Q ss_pred             HHHHcCChhHHHHHHhhCcc
Q 005095          306 AVIDAGLYDVALDLIQHHPQ  325 (715)
Q Consensus       306 ~A~~~g~~~iv~~Ll~~~~~  325 (715)
                      +|++.|+.+++++|.+....
T Consensus       160 ~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          160 FVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999987544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=6.6e-26  Score=206.88  Aligned_cols=126  Identities=18%  Similarity=0.145  Sum_probs=65.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCC-CCCHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-GATPLCM  273 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~-g~tpLh~  273 (715)
                      |..|.||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+. |+.+++++|+++|++++ .+|.. |.||||+
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~   84 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRPVHD   84 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHH--cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCHHHH
Confidence            4445555555555555555555555  455555555555555555555 55555555555555543 34444 5555555


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCc
Q 005095          274 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  324 (715)
Q Consensus       274 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  324 (715)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            555555555555555555555555555555555555555555555555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=6.7e-26  Score=212.11  Aligned_cols=141  Identities=17%  Similarity=0.156  Sum_probs=66.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCh-HH
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT-AL  237 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~T-pL  237 (715)
                      .+..|.||||+|+..|+.+++++|++.+. +++.. |..|+||||+|+ .|+.+++++|++  .|++++.+|..|.| ||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGA-NPNAP-NSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLTRPV   82 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTC-CTTCC-CSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCCCHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHH-cCCHHHHHHHHH--cCCCCCCcCCCCCcHHH
Confidence            34445555555555555555555554422 22222 455555555553 555555555555  45555555555555 55


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHH
Q 005095          238 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV  305 (715)
Q Consensus       238 h~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~  305 (715)
                      |+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            55555555555555555555553 45555555555555555555555555555555555555555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=8.1e-26  Score=211.54  Aligned_cols=144  Identities=17%  Similarity=0.080  Sum_probs=120.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCC-HHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT-PLCM  273 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~t-pLh~  273 (715)
                      +..|.||||+|+..|+.++|++|++  .|++++.+|..|+||||+|+ .|+.+++++|+++|++++ .+|..|.| |||+
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~   84 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHD   84 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHH
Confidence            6789999999999999999999999  89999999999999999985 899999999999999986 79999999 9999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHh
Q 005095          274 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       274 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++. +.++..|.||.+.+..
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~~~  153 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGPSD  153 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999996 8899999999886543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.9e-25  Score=203.81  Aligned_cols=132  Identities=17%  Similarity=0.167  Sum_probs=123.4

Q ss_pred             ccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-C
Q 005095          155 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV-G  233 (715)
Q Consensus       155 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~-G  233 (715)
                      +++..+..|.||||+|+..|+.+++++|++.+. +++.+ |..|+||||+|+. |+.+++++|++  +|++++.+|.. |
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~~g   78 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNAL-NRFGRRPIQVMMM-GSAQVAELLLL--HGAEPNCADPATL   78 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCTTTTTSTT-SCHHHHHHHHH--HTCCSSCCBTTTT
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC-CcCCc-CCCCCCHHHHHHc-CCHHHHHHHHH--CCCCCCCcCCCCC
Confidence            567888999999999999999999999998754 45544 8999999999999 99999999999  89999999999 9


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 005095          234 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  292 (715)
Q Consensus       234 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~  292 (715)
                      +||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999986 8999999999999999999999999999985

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4e-24  Score=191.53  Aligned_cols=124  Identities=27%  Similarity=0.429  Sum_probs=60.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      |+||||.|+..|+.+++++|++.+.. ++. .|..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNA-KDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC-TTC-CCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCC-CCC-cCCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCcHHHHHHH
Confidence            44555555555555555555544322 222 24445555555555555555555555  445555555555555555555


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK  291 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga  291 (715)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            555555555555554443 444445555555555555555555555444

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.8e-24  Score=197.36  Aligned_cols=126  Identities=24%  Similarity=0.256  Sum_probs=87.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      ...+.||||+|+..|+.++|++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence            3456677777777777777777777  667777777777777777777777777777777777664 5666777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhC
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  323 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  323 (715)
                      +..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7777777777777777777777777777777777777777777776653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.9e-24  Score=208.25  Aligned_cols=143  Identities=15%  Similarity=0.074  Sum_probs=129.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCChHHHHHHHcCcH----HHHHHHHhcCCCCCccCCCCCCCHHH
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVT----KIAEVMVNKNRELPSIRGNKGATPLC  272 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d-~~G~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~d~~g~tpLh  272 (715)
                      +.++||.|++.|+.+.++.+++  .+  ++.++ ..|+||||+|+.+|+.    +++++|+++|++++ .+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~--~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE--KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH--HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHh--cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHH
Confidence            4689999999999999999988  34  45556 7899999999999975    59999999999997 89999999999


Q ss_pred             HHHHcCC------HHHHHHHHhcCCCCCccccccc-cHHHHHHHcCC-----hhHHHHHHh-hCcccceecCCCCCCHHH
Q 005095          273 MAALLGH------KEMIWYLYSVTKEEDLKEEDRI-ELLVAVIDAGL-----YDVALDLIQ-HHPQLAMARDGNGETALH  339 (715)
Q Consensus       273 ~A~~~g~------~~iv~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~-----~~iv~~Ll~-~~~~~~~~~d~~g~tpLh  339 (715)
                      +|+..|+      .+++++|+++|+++|.+|..|. ||||+|+..+.     .+++++|++ +|+++ +.+|..|+||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHH
Confidence            9999987      6899999999999999999999 99999999543     569999999 99996 899999999999


Q ss_pred             HHHhCCC
Q 005095          340 VLARKPS  346 (715)
Q Consensus       340 ~A~~~~~  346 (715)
                      +|++.++
T Consensus       160 ~A~~~~~  166 (186)
T 3t8k_A          160 FVKRCQK  166 (186)
T ss_dssp             HHHTTTC
T ss_pred             HHHHcCC
Confidence            9999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=188.07  Aligned_cols=126  Identities=25%  Similarity=0.347  Sum_probs=122.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~  276 (715)
                      +|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHH
Confidence            58999999999999999999999  799999999999999999999999999999999999986 789999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcc
Q 005095          277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  325 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  325 (715)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1e-23  Score=192.35  Aligned_cols=127  Identities=21%  Similarity=0.199  Sum_probs=116.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHH
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      ....|.||||+||..|+.+++++|++.+. +++.. |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGA-DVNAK-DEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCC-CCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHH
Confidence            34567899999999999999999998754 44444 8899999999999999999999999  89999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT  290 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g  290 (715)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999986 78999999999999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=5.3e-24  Score=194.38  Aligned_cols=126  Identities=21%  Similarity=0.207  Sum_probs=90.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |.+|+||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A   83 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDA   83 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHHH
Confidence            6677777777777777777777777  677777777777777777777777777777777777765 5677777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhC
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  323 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  323 (715)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            7777777777777777777777777777777777766666666555543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1e-24  Score=209.93  Aligned_cols=112  Identities=18%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc-cccccHHHHHH
Q 005095          230 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVI  308 (715)
Q Consensus       230 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~  308 (715)
                      +..|+||||+|+..|+.++++.|++ |++++ .+|..|.||||+|+..|+.+++++|+++|++++.++ .+|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4466677777777777777777776 66654 566677777777777777777777777777776666 66777777777


Q ss_pred             HcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhC
Q 005095          309 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK  344 (715)
Q Consensus       309 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  344 (715)
                      ..|+.+++++|+++|+++ +.+|.+|+||||+|++.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREI  153 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHh
Confidence            777777777777777664 66777777777777764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=7.6e-25  Score=221.08  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc-cccccHHHHHHH
Q 005095          231 KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVID  309 (715)
Q Consensus       231 ~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~~  309 (715)
                      ..|.||||+|+..|+.++++.|++ |++++ .+|..|.||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            345566666666666666666665 55553 455556666666666666666666666666665555 455666666666


Q ss_pred             cCChhHHHHHHhhCcccceecCCCCCCHHHHHHh
Q 005095          310 AGLYDVALDLIQHHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       310 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      .|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus       121 ~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          121 YVRPEVVEALVELGADI-EVEDERGLTALELARE  153 (244)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence            66666666666665553 5666777777777765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=6.6e-23  Score=197.16  Aligned_cols=140  Identities=24%  Similarity=0.184  Sum_probs=126.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCChHHH
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC  238 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d-~~G~TpLh  238 (715)
                      +..|+||||+|+..|+.++++.|++  +.+++.. |..|+||||+|+..|+.+++++|++  .|++++.+| ..|+||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence            4568899999999999999999998  4455554 8999999999999999999999999  899999998 89999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHH
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  318 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~  318 (715)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|++.++.                 ..+.+||++|+..|+.++++.
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHH
Confidence            9999999999999999999986 8999999999999986543                 346799999999999999999


Q ss_pred             HHhh
Q 005095          319 LIQH  322 (715)
Q Consensus       319 Ll~~  322 (715)
                      |.++
T Consensus       178 L~~~  181 (183)
T 3deo_A          178 LEGQ  181 (183)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            9765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=8.5e-23  Score=212.40  Aligned_cols=139  Identities=17%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccc------ccCCCChHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCC
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLAL------RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGA  268 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~------~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~d~~g~  268 (715)
                      +.++||.|+..|+.+.|+.|++  .|++++.      .|..|+||||+|+..   |+.+++++|+++|++++ .+|..|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCC
Confidence            3467999999999999999999  8999998      689999999999997   89999999999999986 7899999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          269 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       269 tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      ||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..|+.+++++|++++++       .|.||||+|+..|+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999998875       58999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=4.5e-23  Score=184.43  Aligned_cols=111  Identities=23%  Similarity=0.214  Sum_probs=81.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      +..|.||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH--cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence            4556777777777777777777777  677777777777777777777777777777777777765 6777777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHH
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI  308 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~  308 (715)
                      +..|+.+++++|+++|++++.++.+|.||||+|.
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            7777777777777777777777777777777773

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=9.1e-23  Score=205.80  Aligned_cols=142  Identities=23%  Similarity=0.171  Sum_probs=128.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCChHHHH
Q 005095          161 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCF  239 (715)
Q Consensus       161 ~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d-~~G~TpLh~  239 (715)
                      ..|.||||+||..|+.++++.|++  +.+++.+ |..|+||||+||..|+.++|++|++  +|++++.+| ..|.||||+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSCCCHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCcCCCCCCCCHHHH
Confidence            468899999999999999999998  4455554 8999999999999999999999999  899999998 789999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          240 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       240 Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      |+..|+.+++++|+++|++++ .+|..|.||||+|+..++                 ...+.||||+|+..|+.+++++|
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            999999999999999999986 899999999999986332                 24688999999999999999999


Q ss_pred             HhhCcc
Q 005095          320 IQHHPQ  325 (715)
Q Consensus       320 l~~~~~  325 (715)
                      ++...+
T Consensus       180 ~~~~~~  185 (244)
T 3ui2_A          180 EGQVFE  185 (244)
T ss_dssp             HHHHEE
T ss_pred             HHhccc
Confidence            997544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=4.8e-23  Score=204.64  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=80.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCCCHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCM  273 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~d~~g~tpLh~  273 (715)
                      +..|.||||+||..|+.++|++|++  .|++++.+|..|+||||+|+..|+.+++++|+++ |++++ .+|..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHh--CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHH
Confidence            4556666666666666666666666  5666666666666666666666666666666666 66654 566666666666


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCccc
Q 005095          274 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL  326 (715)
Q Consensus       274 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  326 (715)
                      |+..|+.+++++|+++|++++.++.+|.||||+|+..++.++++.|++.++..
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            66666666666666666666666666666666666666666666666666543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=209.07  Aligned_cols=141  Identities=18%  Similarity=0.093  Sum_probs=122.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhc-----cCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCC
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~-----~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      +.++||.|+..|+.+.++.|++.+.+ ++..     .+..|+||||+|+..   |+.++|++|++  .|++++.+|..|+
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSCTTCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCCCCCCCCCCC
Confidence            45789999999999999999977654 3331     378999999999997   89999999999  7999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCCh
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY  313 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  313 (715)
                      ||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999999986 8999999999999999999999999999986      589999999988863

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=4.7e-22  Score=181.38  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=112.0

Q ss_pred             CcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccccc
Q 005095          223 PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE  302 (715)
Q Consensus       223 g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  302 (715)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            5667 789999999999999999999999999999986 78999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCC
Q 005095          303 LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  345 (715)
Q Consensus       303 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  345 (715)
                      |||+|+..|+.+++++|+++++++ +.+|.+|.||||+|+..+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhcc
Confidence            999999999999999999999996 899999999999998754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=9e-23  Score=202.64  Aligned_cols=140  Identities=22%  Similarity=0.236  Sum_probs=114.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCC
Q 005095          156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMT-PEDLALRNKVGN  234 (715)
Q Consensus       156 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~-g~~i~~~d~~G~  234 (715)
                      ++..+..|.||||+||..|+.+++++|++.+. +++.+ |..|+||||+||..|+.++|++|++  . |++++.+|..|+
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGL-DKAGSTALYWACHGGHKDIVEMLFT--QPNIELNQQNKLGD  141 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCHHHHHHHTT--STTCCCCCCCTTSC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCC-Ccccc-CCCCCCHHHHHHHcCCHHHHHHHHc--CCCCCccccCCCCC
Confidence            34456678899999999999999999998654 45544 8999999999999999999999999  6 999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcccccc
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR  300 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  300 (715)
                      ||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.|++.+..+.++
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999999986 899999999999999999999999999999877665543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=5.8e-22  Score=177.17  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=104.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHH
Q 005095          160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF  239 (715)
Q Consensus       160 ~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~  239 (715)
                      +..|.||||+|+..|+.+++++|++.+. +++.. |..|+||||+|+..|+.+++++|++  .|++++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRT-LEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSC-CTTSSCHHHHHHHTTCHHHHHHHHT--TTCCTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCC-CcCcc-CCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHH
Confidence            4567899999999999999999998765 44444 8899999999999999999999999  899999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH
Q 005095          240 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM  282 (715)
Q Consensus       240 Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~i  282 (715)
                      |+..|+.+++++|+++|++++ .+|..|.||||+|+..+..++
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHHHHH
Confidence            999999999999999999986 899999999999955444444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.6e-20  Score=192.95  Aligned_cols=164  Identities=20%  Similarity=0.110  Sum_probs=138.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhhCccchh--------------------h--ccCC-------CCCcHHHHHHHcC
Q 005095          159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC--------------------V--RISR-------NQDTALHIAAGAR  209 (715)
Q Consensus       159 ~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~--------------------~--~~d~-------~g~TpLh~Aa~~g  209 (715)
                      .|..+.++|+.+...|+....+++-..-+....                    .  ....       ...++||.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            466778899999999997776654321110000                    0  0000       1235899999999


Q ss_pred             CHHHHHHHHhcCCCcc------cccccCCCChHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 005095          210 RTLFVQELVNLMTPED------LALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  280 (715)
Q Consensus       210 ~~~iv~~Ll~~~~g~~------i~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~  280 (715)
                      +.+.++.+++  .|.+      ++..|..|+||||+|+..   |+.+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus       142 d~~~~~~ll~--~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          142 DIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             CHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred             ccHHHHHHHH--hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence            9999999999  7888      445588999999999999   89999999999999987 7999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcc
Q 005095          281 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  325 (715)
Q Consensus       281 ~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  325 (715)
                      ++|++|+++|++++.+|.+|.||||+|+..|+.+++++|++++++
T Consensus       219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=7.2e-21  Score=160.93  Aligned_cols=93  Identities=28%  Similarity=0.408  Sum_probs=78.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  276 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~  276 (715)
                      +|+||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence            47888888888888888888888  788888888888888888888888888888888888875 788888888888888


Q ss_pred             cCCHHHHHHHHhcCCC
Q 005095          277 LGHKEMIWYLYSVTKE  292 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~  292 (715)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            8888888888888764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=1.1e-20  Score=201.12  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=118.0

Q ss_pred             CCCCCcHHHHHHHc-CCHHHHHHHHhcCCCccccccc--CCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHH
Q 005095          195 SRNQDTALHIAAGA-RRTLFVQELVNLMTPEDLALRN--KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL  271 (715)
Q Consensus       195 d~~g~TpLh~Aa~~-g~~~iv~~Ll~~~~g~~i~~~d--~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpL  271 (715)
                      +..+.||||.|+.. |+.++++.|++  .|++++..|  ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpL  272 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPL  272 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHH
Confidence            34567899999999 99999999999  899999988  899999999999999999999999999986 7899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccc--eecCCCCCCHHHHHHhC
Q 005095          272 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLARK  344 (715)
Q Consensus       272 h~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~  344 (715)
                      |+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.+....  ...+..+.|+++.+...
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764321  23456678888877654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=3.6e-20  Score=190.30  Aligned_cols=127  Identities=20%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccch----hhccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCCh
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAV----CVRISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGNT  235 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~----~~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~g~~i~~~d~~G~T  235 (715)
                      ..++|+.|+..|+.+.++.+++.+.+..    ....|..|+||||+|+..   |+.++|++|++  +|+++|.+|..|+|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~in~~d~~g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH--CCCCccccCCCCCC
Confidence            3479999999999999999998766532    122378899999999999   99999999999  89999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 005095          236 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  292 (715)
Q Consensus       236 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~  292 (715)
                      |||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999986 8999999999999999999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=3.3e-20  Score=197.41  Aligned_cols=147  Identities=18%  Similarity=0.179  Sum_probs=116.4

Q ss_pred             cCCCCCChHHHHHHHc-CCHHHHHHHHhhCccchhhccC--CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 005095          158 RNCFTSYAPLHLAALK-GDWDFARNFFNLNPEAVCVRIS--RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN  234 (715)
Q Consensus       158 ~~~~~g~T~Lh~Aa~~-g~~~~v~~LL~~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~  234 (715)
                      ..+..+.|+||.|+.. |+.++++.||+.+.+ ++.. +  ..|.||||+|+..|+.++|++|++  +|++++.+|..|+
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gadvn~~d~~G~  269 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGAD-VNWV-NGGQDNATPLIQATAANSLLACEFLLQ--NGANVNQADSAGR  269 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSC
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCcc-ccccCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCCC
Confidence            3445567899999999 999999999987654 4443 5  789999999999999999999999  8999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---CCCccccccccHHHHHHH
Q 005095          235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK---EEDLKEEDRIELLVAVID  309 (715)
Q Consensus       235 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga---~~~~~~~~g~t~L~~A~~  309 (715)
                      ||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.+.   +....+..+.|+++.+..
T Consensus       270 TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          270 GPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             CHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            99999999999999999999999986 899999999999999999999999998774   334455667787776554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.1e-20  Score=166.50  Aligned_cols=107  Identities=27%  Similarity=0.350  Sum_probs=94.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM  273 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~  273 (715)
                      +|.+|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence            37889999999999999999999998  788999999999999999999999999999999999886 788889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccccccccH
Q 005095          274 AALLGHKEMIWYLYSVTKEEDLKEEDRIEL  303 (715)
Q Consensus       274 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  303 (715)
                      |+..|+.+++++|+++|+++|.++..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            999999999999999999988888888776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=7.5e-20  Score=154.62  Aligned_cols=93  Identities=23%  Similarity=0.333  Sum_probs=88.4

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcC
Q 005095          232 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  311 (715)
Q Consensus       232 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g  311 (715)
                      +|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            48999999999999999999999999986 79999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhhCcc
Q 005095          312 LYDVALDLIQHHPQ  325 (715)
Q Consensus       312 ~~~iv~~Ll~~~~~  325 (715)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.6e-19  Score=159.15  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=102.0

Q ss_pred             cccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHH
Q 005095          228 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV  307 (715)
Q Consensus       228 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  307 (715)
                      .+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            568899999999999999999999999999986 7899999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHhhCcccceecCCCCCCHH
Q 005095          308 IDAGLYDVALDLIQHHPQLAMARDGNGETAL  338 (715)
Q Consensus       308 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  338 (715)
                      +..|+.+++++|+++|+++ +.++..|.||-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence            9999999999999999996 88899998874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=1.9e-17  Score=144.63  Aligned_cols=89  Identities=21%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      |.+|.||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A   97 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDIS   97 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHHHHH
Confidence            6677777777777777777777777  677777777777777777777777777777777777765 6777777777777


Q ss_pred             HHcCCHHHHHHH
Q 005095          275 ALLGHKEMIWYL  286 (715)
Q Consensus       275 ~~~g~~~iv~~L  286 (715)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=5.3e-17  Score=141.72  Aligned_cols=94  Identities=21%  Similarity=0.210  Sum_probs=85.5

Q ss_pred             ccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHH
Q 005095          225 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELL  304 (715)
Q Consensus       225 ~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L  304 (715)
                      .+...|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF   94 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence            345678899999999999999999999999999986 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHH
Q 005095          305 VAVIDAGLYDVALDL  319 (715)
Q Consensus       305 ~~A~~~g~~~iv~~L  319 (715)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	715
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 67/350 (19%), Positives = 118/350 (33%), Gaps = 46/350 (13%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM---- 221
           PLH+AA  G  + A+  + L  +A     +++  T LH AA    T  V+ L+       
Sbjct: 36  PLHMAARAGHTEVAK--YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93

Query: 222 ---------------------------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVN 254
                                           A   K G T L  AA  G  ++AE+++ 
Sbjct: 94  LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 153

Query: 255 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD 314
           ++   P+  G  G TPL +A    + +++  L            +    L         +
Sbjct: 154 RDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

Query: 315 VALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPK 374
           VA  L+Q+    A A    G T LH+ A++       +++        +   +       
Sbjct: 213 VARSLLQYGGS-ANAESVQGVTPLHLAAQE-----GHAEMVALLLSKQANGNLGNKSGLT 266

Query: 375 LMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 434
            +HL A E    + + VL+     +    R     L  A   GN++ +   +  +   + 
Sbjct: 267 PLHLVAQEGHVPVAD-VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVN 324

Query: 435 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 484
                  S  H A       I  L+ + GA  +        +    L +A
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 3e-13
 Identities = 75/397 (18%), Positives = 126/397 (31%), Gaps = 69/397 (17%)

Query: 166 PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 223
           PLH+A+  G     +N      +P       +   +T LH+AA A  T   + L+     
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKA- 57

Query: 224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
             +  + K   T L  AA  G T + ++++  N   P++    G TPL +AA  GH E +
Sbjct: 58  -KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 115

Query: 284 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 343
             L      +    +     L      G   VA  L++       A   NG T LHV   
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVH 174

Query: 344 KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL 403
             +                                  L++VK L  +             
Sbjct: 175 HNN----------------------------------LDIVKLLLPR-----GGSPHSPA 195

Query: 404 RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELG 463
                 L  A +   VE    L+Q   +          +  H+A      ++  L+    
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 464 AHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGA-----------ALQLRRELHWF 510
           A+ +L     +++    LHL  +        + I  G             L +       
Sbjct: 255 ANGNL----GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 310

Query: 511 KEIE-KVVQPSYREAKNSEGRTP-HILFSEEHRRLVR 545
           K ++  +   +   AK   G +P H    + H  +V 
Sbjct: 311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-09
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
           PLHL A +G    A     +    +    +R   T LH+A+       V+ L+      +
Sbjct: 267 PLHLVAQEGHVPVAD--VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
              + K+G + L  AA  G T I  +++      P+   + G TPL +A  LG+  +   
Sbjct: 325 A--KTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDV 381

Query: 286 LYSVTKEE---DLKEEDRIEL 303
           L  VT E     + ++ R+  
Sbjct: 382 LKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 5e-09
 Identities = 46/249 (18%), Positives = 73/249 (29%), Gaps = 46/249 (18%)

Query: 235 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEED 294
           T L  A+  G   I + ++ +    P++   K  TPL MAA  GH E+  YL        
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYL-------- 52

Query: 295 LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 354
                        +      V             A+  + +T LH  AR       G   
Sbjct: 53  -------------LQNK-AKV------------NAKAKDDQTPLHCAARI------GHTN 80

Query: 355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAV 414
                   +     A          A           LL  ++    + +K    L  A 
Sbjct: 81  MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 140

Query: 415 ELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKD 474
           + G V    +L++   +       +  +  H+AV H    I  L+   G           
Sbjct: 141 KYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS----PA 195

Query: 475 ENNNNMLHL 483
            N    LH+
Sbjct: 196 WNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 6/189 (3%)

Query: 156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
                +  Y PLH+AA +   + AR+   L         S    T LH+AA       V 
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSL--LQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

Query: 216 ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 275
            L++     +L   NK G T L   A  G   +A+V++             G TPL +A+
Sbjct: 249 LLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVAS 305

Query: 276 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE 335
             G+ +++ +L     + + K +     L      G  D+   L+++          +G 
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGT 364

Query: 336 TALHVLARK 344
           T L +  R 
Sbjct: 365 TPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
           V+      Y PLH+A+  G+    +       +      ++   + LH AA    T  V 
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK--TKLGYSPLHQAAQQGHTDIVT 347

Query: 216 ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEV 251
            L+           +  G T L  A   G   + +V
Sbjct: 348 LLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTDV 381

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.9 bits (157), Expect = 9e-12
 Identities = 41/274 (14%), Positives = 76/274 (27%), Gaps = 29/274 (10%)

Query: 166 PLHLAALKGDWDFARNFFNL-NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE 224
              +AA+ G          L   + +   I      A  +AA       +  L  L   E
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 225 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS--IRGNKGATPLCMAALLGHKEM 282
            +A+       A   AA +G   +   +        +  I+          A   GH  +
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 212

Query: 283 IWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 342
           I +L                  +   + G   V   + +H       R      A  +  
Sbjct: 213 INFLLD-------CPVMLAYAEIHEFEYGEKYVNPFIARHV-----NRLKEMHDAFKLSN 260

Query: 343 RKPS---AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI 399
                     S    GF+         +R            L+ ++ L     +   +  
Sbjct: 261 PDGVFDLVTKSECLQGFYMLR----NLIRRN------DEVLLDDIRFLLSIPGIKALAPT 310

Query: 400 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI 433
             +    + LL  A+ LGN     +L+   P+++
Sbjct: 311 ATIPGDANELLRLALRLGNQGACALLLS-IPSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.1 bits (147), Expect = 1e-10
 Identities = 37/220 (16%), Positives = 59/220 (26%), Gaps = 23/220 (10%)

Query: 145 SLSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHI 204
            L     +   ++   +       LAA  G          L P  +   I      A  +
Sbjct: 111 LLLTSDEIVKVIQAENYQ---AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 167

Query: 205 AAGARRTLFVQELVNL-MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELP--- 260
           AA       +  L  L  T     ++ +        A   G   +   +++    L    
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 227

Query: 261 ---SIRGNKGATPLCMAALLGHKEMIWYLYS---------VTKEEDLKEEDRIELLVAVI 308
                 G K   P     +   KEM               VTK E L+    +  L+   
Sbjct: 228 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 287

Query: 309 DAGLYDVALDLIQHHPQLAMARDG----NGETALHVLARK 344
           D  L D    L+      A+A       +    L +  R 
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 37/317 (11%), Positives = 84/317 (26%), Gaps = 36/317 (11%)

Query: 199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 258
           D  L +          Q  ++      + L  K     +       + ++ +++      
Sbjct: 13  DPQLRLIPWILWENLFQHFISANELSLMTLSYK-EAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 259 LPS----------IRGNKGATPLCMAALLGHKEMIWYL-YSVTKEEDLKE---EDRIELL 304
                         +G K      +AA+ G    +  L   +T +E +K    E+     
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 305 VAVIDAGLYDVALDLIQHHP-QLAMARDGNGETALHVLAR---------------KPSAF 348
           +A  + G   V   L +  P ++          A  + A                  +  
Sbjct: 132 LAAEN-GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

Query: 349 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSR 408
              ++  +  R      G   +++  L     L   +    +      +          +
Sbjct: 191 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 250

Query: 409 LLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 468
            +  A +L N + +  L+     L      +                   +  +   K L
Sbjct: 251 EMHDAFKLSNPDGVFDLVTKSECLQGF---YMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 307

Query: 469 I-ASYKDENNNNMLHLA 484
              +    + N +L LA
Sbjct: 308 APTATIPGDANELLRLA 324

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 3e-10
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 6/175 (3%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
            LH A   G  +       L         +      LHIAA A R   V+ L+      +
Sbjct: 40  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP--LHIAASAGRDEIVKALLGKGAQVN 97

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
               N+ G T L +AA     +IA +++      P  + +  AT +  AA  G+ +MI  
Sbjct: 98  --AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHI 154

Query: 286 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
           L       ++++ +    L    D    + A  L+     +    +   +T L V
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 45/253 (17%)

Query: 232 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK 291
           V N  +C  A SG  +  +  +  ++ L +       T L  A   GH E++ +L  +  
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 292 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASG 351
             + K++     L     AG  ++   L+    Q+  A + NG T LH  A K       
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNR----- 115

Query: 352 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLF 411
                                         E+   L E       +         +  + 
Sbjct: 116 -----------------------------HEIAVMLLEG-----GANPDAKDHYEATAMH 141

Query: 412 TAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIAS 471
            A   GN++ + +L+    +     D    +  H+A    + +   L+   GA   +   
Sbjct: 142 RAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI--- 197

Query: 472 YKDENNNNMLHLA 484
            +++     L +A
Sbjct: 198 -ENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 5/173 (2%)

Query: 167 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 226
           +   A  G  +  +     +         ++  TALH A              L     +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWAC--SAGHTEIVEFLLQLGVPV 63

Query: 227 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 286
             ++  G + L  AA +G  +I + ++ K  ++ +     G TPL  AA     E+   L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 287 YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 339
                  D K+      +      G   +   L+ +       +D  G T LH
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLH 174

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
           PLH AA K   + A     L   A        + TA+H AA       +  L+       
Sbjct: 106 PLHYAASKNRHEIAVML--LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL--YYKAS 161

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
             +++  GNT L  A      + A+++V++      I   +  TPL +A   G   ++  
Sbjct: 162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAK-GGLGLILKR 219

Query: 286 L 286
           +
Sbjct: 220 M 220

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT 290
           G+TAL  A +       + ++      E   ++ + G T L +AA+LG    +  LY+  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 291 KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ---------LAMARDGNGETALHVL 341
               + E      L        +  A  L+Q  P          L  ++D   +T+    
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 342 ARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE 401
           A          +          +           +H+  +     +   +          
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 402 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 461
                   L  AVE      L +L++   +         R+    A++     +  L+  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 462 LGAHKD 467
            GA + 
Sbjct: 247 HGAPEP 252

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
            ER        L  AA KG  +  +   +     V    +  ++  +H    +  +    
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 216 ELVNLMTPE-DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 274
               L+    D+ +R + G T L  A       + + ++ +     +   + G T L +A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 275 ALLGHKEMIWYL 286
             L  K++   L
Sbjct: 261 VELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-08
 Identities = 58/307 (18%), Positives = 99/307 (32%), Gaps = 32/307 (10%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
            L  A    D D  +         V  +      T LH A    R   V+  + L    D
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVE--LLLRHGAD 64

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
             LR K G T    AA++G  K+ ++ ++K  +  +     G T    AA+ G  + + +
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 286 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 345
           LY      +L+                            +        G TAL   A K 
Sbjct: 124 LYKRGANVNLRR------------------------KTKEDQERLRKGGATALMDAAEKG 159

Query: 346 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 405
                   L      + +   M        +       V+ +    LL   + +     +
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL-LLDHGADVNVRGER 218

Query: 406 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGA- 464
               L  AVE  ++  +  L++     I   D   ++   +AV  + +KI  L+ + GA 
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 465 --HKDLI 469
               DL+
Sbjct: 279 TDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 19/196 (9%)

Query: 158 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL 217
           +     + PLH A      D          + V  + +      L   AG+ + L +   
Sbjct: 34  QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 218 VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV---------NKNRELPSIRGNKGA 268
                 E     +  G TA   AAV G  K  + +           K +E        GA
Sbjct: 94  KGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 269 TPLCMAALLGHKEMIWYLYS-----VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 323
           T L  AA  GH E++  L       V   +++     I  L++  D+ +  +   L+ H 
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 324 PQLAMARDGNGETALH 339
             +   R   G+T L 
Sbjct: 210 ADV-NVRGERGKTPLI 224

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 159 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV 218
                  P  LAA+ G     + F +   +           TA   AA   +   ++ L 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 219 NLM--------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 270
                      T ED     K G TAL  AA  G  ++ ++++++     +   N G   
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 271 LCMAAL----LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 326
           L  A L       + +   L     + +++ E     L+  ++     +   L++     
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 327 AMARDGNGETALHVLARK 344
               D +G+TAL +    
Sbjct: 246 INDTDSDGKTALLLAVEL 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 33/298 (11%), Positives = 87/298 (29%), Gaps = 49/298 (16%)

Query: 199 DTALHIAAGARRTLFVQEL-----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 253
           ++ + +   A  +  + E      VN++ P           T L + A +   + +E ++
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRH-------NRTVLHWIASNSSAEKSEDLI 53

Query: 254 NKNREL-------PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA 306
               +         +       TPL +A L   + ++ YL     +  +  +     L  
Sbjct: 54  VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 113

Query: 307 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG 366
                 + + + ++                                              
Sbjct: 114 AAANRDFGMMVYMLNSTKLKGD--------------------------IEELDRNGMTAL 147

Query: 367 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI 426
           M    +     + + +L+     +V     ++      K    L  A ++ N+  +  L+
Sbjct: 148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 207

Query: 427 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 484
               +   K D+  ++   +A    + ++   + + GA  +      D  ++    LA
Sbjct: 208 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN 256
              TALH AA       V+  +      +   +++ G T +  AA  G  ++   ++ + 
Sbjct: 186 KGRTALHYAAQVSNMPIVKY-LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 257 RELPSIRGNKGATPLCMAALLGHKEMIWYL 286
                       T   +A    H  ++   
Sbjct: 245 AS-VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 24/124 (19%), Positives = 34/124 (27%), Gaps = 34/124 (27%)

Query: 221 MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 280
                       G TAL +AA      I + +V +       +   G TP+ +AA  G  
Sbjct: 175 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 234

Query: 281 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 340
           E++ YL                     I  G   V             A D    TA  +
Sbjct: 235 EVVMYL---------------------IQQGA-SV------------EAVDATDHTARQL 260

Query: 341 LARK 344
               
Sbjct: 261 AQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
            +   +     LH AA   +    +            +   +  T + +AA   R   V 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-DEDGKTPIMLAAQEGRIEVVM 238

Query: 216 ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEV 251
            L+       +   +   +TA   A  +    I ++
Sbjct: 239 YLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDI 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 40/252 (15%), Positives = 78/252 (30%), Gaps = 19/252 (7%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 292
                  A  SG T+    ++ +  +  +     G T L  A +  + +M+ +L      
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 293 EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS 352
            +  + +    L A    G  D+A  LI        A +  G+T L +   +        
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEE-------- 149

Query: 353 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFT 412
                   +      R  +D +    +   ++ R   Q L           +     L  
Sbjct: 150 ----AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205

Query: 413 AVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY 472
           A   G  E L +LIQ   + +   D    +  H A    +E+   ++ E     +     
Sbjct: 206 AAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA---- 260

Query: 473 KDENNNNMLHLA 484
            ++       +A
Sbjct: 261 VNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 249 AEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI 308
           A   +N            G T L +AA  G+ E++  L     + ++K+ D    L A  
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240

Query: 309 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
             G  +    L+++   +  A +  G+TA  V    
Sbjct: 241 HWGKEEACRILVENLCDM-EAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 156 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 215
             R+  +    LH+AA KG  +  +                +  T LH AA   +    +
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 216 ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN 256
            LV  +   D+   NKVG TA   A    +  + E+   +N
Sbjct: 250 ILVENLC--DMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 160 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL-V 218
             TS      AA K   D    +            +  +++  +   G R+   ++ L +
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 219 NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 275
             +    L  ++  G+T L  AA  G   I + +++   + P I    G  P+   A
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 27/246 (10%), Positives = 67/246 (27%), Gaps = 20/246 (8%)

Query: 117 SSDQVPSTSAELSRAAADESSGFAQPAVSLSQPGAVSGGVERNCFTSYAPLHLAALKGDW 176
            S  V     ++   A  +   F +     +     S        +S       +     
Sbjct: 26  PSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLL 85

Query: 177 DFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA 236
               + F      + + +  + +T LH          V+ LV   +  +    + +G + 
Sbjct: 86  QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESC 143

Query: 237 LCFA---AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE 293
           L  A     +  +   E +++       +  +   T L    +               + 
Sbjct: 144 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 203

Query: 294 DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAM---------------ARDGNGETAL 338
            +    + +           +   +      + ++               A+D NG+T L
Sbjct: 204 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 263

Query: 339 HVLARK 344
           ++ AR 
Sbjct: 264 NIAARL 269

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 35/296 (11%), Positives = 80/296 (27%), Gaps = 34/296 (11%)

Query: 195 SRNQDTALHIAAGARRTLFVQELVNLMTPEDL---ALRNKVGNTALCFAAVSGVTKIAEV 251
              Q   L           +QE+   +  +     +            +  S + ++ + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 252 MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV---TKEEDLKEEDRIELLVAVI 308
             N    L       G TPL     + + E++ +L          D   E  +   V  +
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

Query: 309 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR 368
           +         L+ +     +  D    T LH +                  C  +     
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHII----------ITSGMTGCSAAAKYYL 201

Query: 369 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM 428
            IL   ++  Q   +     E+    +D                     ++   + L  +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD--------------SILENLDLKWI 247

Query: 429 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 484
             N++   D +  +  +IA       I + + + GA   +     +++    +   
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 19/169 (11%), Positives = 37/169 (21%), Gaps = 48/169 (28%)

Query: 166 PLHLAALKGDWDFAR---------NFFNLNPEAVCVR----------------------- 193
           PLH      + +  +          + +   E+  V+                       
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 194 ---ISRNQDTALHIAAGARRTLFVQELVNLMTPE-----------DLALRNKVGNTALCF 239
                    T LH                                 +        +    
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 240 AAVSGVTKIAEVMVNKNR--ELPSIRGNKGATPLCMAALLGHKEMIWYL 286
                   I E +  K     + + + + G T L +AA LG+  ++  L
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 5/179 (2%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
            LHLAA     D A+   +   +A     +        +AA A     +           
Sbjct: 26  SLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN- 84

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
                    T     A     +     +       +   N G T L  AA + + E +  
Sbjct: 85  ---ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI 141

Query: 286 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           L       D +++     L      G Y+ +  L+ +        D        V + +
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASER 199

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 4/195 (2%)

Query: 199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 258
           +  LH A        VQEL++   P  L  +++ G   L ++      +I   +++K   
Sbjct: 1   NYPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 259 LPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 318
           +        +             +        +             V  +   +     +
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 319 ---LIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL 375
               +  +      +D   +  LH  A   S        G  +  +              
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 376 MHLQALELVKRLWEQ 390
           +     +    L E+
Sbjct: 180 LAEGHGDAAVLLVEK 194

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 3/183 (1%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA--GARRTLFVQELVNLMTP 223
           PLH A ++ ++   +   +  P  +  +  ++    LH +    A               
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 224 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
            D    +          +V  +  +  +     +   +   N+G T L +A      E+ 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 284 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 343
            +L        +K++     L      G   +   L          +D  G T L     
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 344 KPS 346
           +  
Sbjct: 182 EGH 184

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 39/282 (13%), Positives = 70/282 (24%), Gaps = 60/282 (21%)

Query: 267 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 326
           G TPL +A + G+   +  L                              ++L Q   + 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRL------------------------------VNLFQQGGRE 32

Query: 327 AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKR 386
               +   +T LH+                                  L          R
Sbjct: 33  LDIYNNLRQTPLHLAVITTLPSVVRLL--VTAGASPMALDRHGQTAAHLACEHRSPTCLR 90

Query: 387 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI 446
                       +          L  AV     E + +L++   ++        RS    
Sbjct: 91  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 150

Query: 447 AVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQLR 504
           AV +    +  L+ + GA+ +     +  + ++ LH A         R  + SGA     
Sbjct: 151 AVENNSLSMVQLLLQHGANVN----AQMYSGSSALHSASGRGLLPLVRTLVRSGADS--- 203

Query: 505 RELHWFKEIEKVVQPSYREAKNSEGRTP-HILFSEEHRRLVR 545
                               KN    TP  +  S     ++R
Sbjct: 204 ------------------SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 1/179 (0%)

Query: 166 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 225
           PLHLA +       R         + +         L     +   L            D
Sbjct: 43  PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102

Query: 226 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 285
           L  RN  G TAL  A  +   +  ++++ +  ++ ++    G +PL  A       M+  
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162

Query: 286 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 344
           L       + +       L +    GL  +   L++        ++ + +T L V   +
Sbjct: 163 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 233 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 283
           G++AL  A+  G+  +   +V    +  S++     TPL +A      +++
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 23/218 (10%), Positives = 57/218 (26%), Gaps = 34/218 (15%)

Query: 267 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 326
           G + L +A +   K +   +                              +  ++     
Sbjct: 2   GDSFLHLAIIHEEKALTMEV------------------------------IRQVKGDLAF 31

Query: 327 AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKR 386
              ++   +T LH+         + + LG               L           +   
Sbjct: 32  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 91

Query: 387 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI 446
                     S +          L  A   G +  + +L+ +  ++  +   + R+  H+
Sbjct: 92  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 151

Query: 447 AVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 484
           AV  +   + +L+ + GA  +           +   L 
Sbjct: 152 AVDLQNPDLVSLLLKCGADVNR----VTYQGYSPYQLT 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	715
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-45  Score=396.57  Aligned_cols=340  Identities=19%  Similarity=0.200  Sum_probs=293.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHc
Q 005095          164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS  243 (715)
Q Consensus       164 ~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~  243 (715)
                      .||||+||..|+.++|++|++.+. +++.. |..|+||||+||..|+.++|++|++  +|++++.+|.+|+||||+|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~-~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~--~gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGA-SPNVS-NVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC-CSCCS-SSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--CcCCCCCCCCCCCCHHHHHHHc
Confidence            389999999999999999998764 45554 8999999999999999999999999  8999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCC--------------------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 005095          244 GVTKIAEVMVNKNRELP--------------------------------SIRGNKGATPLCMAALLGHKEMIWYLYSVTK  291 (715)
Q Consensus       244 g~~~iv~~Ll~~g~~~~--------------------------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga  291 (715)
                      |+.+++++|++.+.+..                                ...+..+.++|+.|+..++.+++++|+++|+
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999998765431                                2356788999999999999999999999999


Q ss_pred             CCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcC--Ccchh
Q 005095          292 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSV--PGMRA  369 (715)
Q Consensus       292 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~--~~~~~  369 (715)
                      +++..+.+|.+|||+|+..|+.+++++|+++++++ +..+..|.||+|.+.....       .+....++...  ....+
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~  228 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAES  228 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCC
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhccch-------hhhhhhhhhccccccccC
Confidence            99999999999999999999999999999999985 8899999999999999864       45556555443  34556


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q 005095          370 ILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV  449 (715)
Q Consensus       370 ~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~  449 (715)
                      ..+.||+|.++......+++... ......+..+..|.|||+.|++.++.+++++|+++|++ ++..+..+.||||.|+.
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASH  306 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhh-ccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcc
Confidence            67889999998544333333322 23566777788999999999999999999999999999 78889999999999999


Q ss_pred             hCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCccccCCCchhhhHHHhhhHHHHHHhhc-chhHhhhhcC
Q 005095          450 HRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ-PSYREAKNSE  528 (715)
Q Consensus       450 ~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l~l~~ga~~~~~~~l~~~~~v~~ll~-~~~~~~~n~~  528 (715)
                      .++.++++++++.|++++    .+|.+|+||||+|+++|+.+                    .++.+++ +++++.+|++
T Consensus       307 ~~~~~~~~~ll~~g~~in----~~d~~G~T~Lh~A~~~g~~~--------------------iv~~Ll~~GAd~n~~d~~  362 (408)
T d1n11a_         307 YGNIKLVKFLLQHQADVN----AKTKLGYSPLHQAAQQGHTD--------------------IVTLLLKNGASPNEVSSD  362 (408)
T ss_dssp             SSCSHHHHHHHHTTCCTT----CCCTTSCCHHHHHHHTTCHH--------------------HHHHHHHTTCCSCCCCSS
T ss_pred             cCcceeeeeecccccccc----ccCCCCCCHHHHHHHcCCHH--------------------HHHHHHHCCCCCCCCCCC
Confidence            999999999999999988    59999999999999998754                    3455554 5667999999


Q ss_pred             CCCchhhhHHHhh
Q 005095          529 GRTPHILFSEEHR  541 (715)
Q Consensus       529 G~Tpl~~a~~~~~  541 (715)
                      |+||||+|.+...
T Consensus       363 G~t~L~~A~~~~~  375 (408)
T d1n11a_         363 GTTPLAIAKRLGY  375 (408)
T ss_dssp             SCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCC
Confidence            9999999988744

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=375.89  Aligned_cols=322  Identities=21%  Similarity=0.227  Sum_probs=282.9

Q ss_pred             ccCCCCCCcccccCCCCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcC----
Q 005095          146 LSQPGAVSGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM----  221 (715)
Q Consensus       146 l~~~G~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~----  221 (715)
                      +.+.|+   +++..|..|+||||+||..|+.+++++||+++. +++.+ |.+|+||||+|+..|+.+++++|+...    
T Consensus        19 Ll~~g~---~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-di~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   93 (408)
T d1n11a_          19 LLQRGA---SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPN   93 (408)
T ss_dssp             HHHTTC---CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHhhhccc
Confidence            445565   567788999999999999999999999998865 45554 899999999999999999999998731    


Q ss_pred             ---------------------------CCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          222 ---------------------------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       222 ---------------------------~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                                                 .+...+..+..|.++|+.|+..++.++++.|+++|.+++ ..+.+|.+|||+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~L~~A  172 (408)
T d1n11a_          94 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVA  172 (408)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHH
T ss_pred             cccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCcCchHHHHH
Confidence                                       123345567889999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          275 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      +..|+.+++++|+++|++++..+..|.||+|.++...+.++...|+...... ...+.+|.||||+|+..+.       .
T Consensus       173 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~t~l~~a~~~~~-------~  244 (408)
T d1n11a_         173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGH-------A  244 (408)
T ss_dssp             HHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC-------H
T ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc-cccCCCCCCHHHHHHHhCc-------H
Confidence            9999999999999999999999999999999999999999999999988775 6778899999999999875       6


Q ss_pred             hhHhhhhhcCC--cchhccCCchhHHHHH----HHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHh
Q 005095          355 GFWRRCIYSVP--GMRAILDPKLMHLQAL----ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM  428 (715)
Q Consensus       355 ~~~~~ll~~~~--~~~~~~~~~~lh~a~~----~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~  428 (715)
                      ++++.......  +..+..|.+|++.++.    +++++|+++     +.+++..+..+.||||.|+..++.++++++++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-----g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             hHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC-----CCccccccccccccchhhcccCcceeeeeeccc
Confidence            67777765544  4456778899999985    566666655     667777888899999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          429 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       429 ~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      |++ ++.+|.+|+||||+|+++|+.++|++|+++|++++.    +|.+|+||||+|++.|+.+
T Consensus       320 g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~----~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         320 QAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCSSSCCHHHHHHHTTCHH
T ss_pred             ccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCCHH
Confidence            999 789999999999999999999999999999999984    9999999999999998854

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=296.46  Aligned_cols=220  Identities=19%  Similarity=0.180  Sum_probs=184.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      +.++|+.+|..|+.+.|+.+|+.++..++.+ |.+|+||||+||..|+.+++++|++  .+.+....+..+.++++.|+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~--~~~~~~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--HTCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhhcccccccc--ccccccccccccccccccccc
Confidence            3478888899999999988888887777665 8889999999999999999999988  677777888888899999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      .|+.+++++|+++|++++ .+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++.+++++|++.
T Consensus        80 ~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            999999999999988875 7888899999999999999999999998988888888888888888888888888888877


Q ss_pred             CcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccccc
Q 005095          323 HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL  402 (715)
Q Consensus       323 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~  402 (715)
                      +.++ +.+|.+                                                                     
T Consensus       159 ~~~i-~~~d~~---------------------------------------------------------------------  168 (223)
T d1uoha_         159 KAST-NIQDTE---------------------------------------------------------------------  168 (223)
T ss_dssp             TCCS-CCCCTT---------------------------------------------------------------------
T ss_pred             ccee-eeccCC---------------------------------------------------------------------
Confidence            7664 444444                                                                     


Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 005095          403 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  461 (715)
Q Consensus       403 ~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  461 (715)
                         |.||||+|+..|+.++|++|+++|++ ++.+|.+|+||||+| ..|+.+++++|++
T Consensus       169 ---g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         169 ---GNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             ---CCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ---CCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence               45555556666778899999999999 788999999999988 5789999999885

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-35  Score=299.25  Aligned_cols=61  Identities=18%  Similarity=0.086  Sum_probs=43.3

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 005095          404 RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  465 (715)
Q Consensus       404 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  465 (715)
                      ..|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++||+
T Consensus       190 ~~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         190 TCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            3456666666666677777777777777 566777777777777777777777777777775

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.4e-36  Score=301.35  Aligned_cols=241  Identities=20%  Similarity=0.158  Sum_probs=168.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---cccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCH
Q 005095          194 ISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP  270 (715)
Q Consensus       194 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~---i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tp  270 (715)
                      .|.+|+||||+||+.|+.++|++|++  .|++   ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~--~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHH--cCCCcccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccchh
Confidence            36788888888888888888888887  5655   66677788888888888888888888888888875 678888888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCccc
Q 005095          271 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFAS  350 (715)
Q Consensus       271 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~  350 (715)
                      ||+|+..|+.+++++|++.+........+   .+...                     ..+..+.+.+..+.....    
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~---~~~~~---------------------~~~~~~~~~~~~~~~~~~----  133 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASD---TYLTQ---------------------SQDCTPDTSHAPAAVDSQ----  133 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------------------------
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccch---hhhhH---------------------HhhhcccchHHHHHHHhh----
Confidence            88888888888888887765432211100   00000                     000000111111100000    


Q ss_pred             CcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCC
Q 005095          351 GSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYP  430 (715)
Q Consensus       351 ~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~  430 (715)
                                                     ..............+.+++.++..|.||||+|++.|+.+++++|+++++
T Consensus       134 -------------------------------~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~  182 (255)
T d1oy3d_         134 -------------------------------PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (255)
T ss_dssp             -----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             -------------------------------cchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc
Confidence                                           0000011111222355677888999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCc--cccCCCch
Q 005095          431 NLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAA  500 (715)
Q Consensus       431 d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~--l~l~~ga~  500 (715)
                      +.....+..|+||||+|++.|+.+++++|+++|++++    .+|..|+||||+|++.++.+.  ++++.||+
T Consensus       183 ~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin----~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT----ARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9777778899999999999999999999999999988    499999999999999998663  34555553

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=285.84  Aligned_cols=211  Identities=17%  Similarity=0.175  Sum_probs=188.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  277 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~  277 (715)
                      +++.|+.+|..|+.+.|+.+++. .+.+++.+|.+|+||||+|+..|+.+++++|++.+.... ..+..+.++++.|+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~-~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHh-CCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-cccccccccccccccc
Confidence            46899999999999999888775 788999999999999999999999999999999998875 6778899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhH
Q 005095          278 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW  357 (715)
Q Consensus       278 g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  357 (715)
                      |+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|.++ +.+|..|.                      
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~----------------------  137 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEA----------------------  137 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSC----------------------
T ss_pred             cccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC----------------------
Confidence            9999999999999999999999999999999999999999999988774 45554444                      


Q ss_pred             hhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q 005095          358 RRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD  437 (715)
Q Consensus       358 ~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d  437 (715)
                                                                        ||||+|+..++.+++++|++.+.+ ++.+|
T Consensus       138 --------------------------------------------------t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d  166 (223)
T d1uoha_         138 --------------------------------------------------TAMHRAAAKGNLKMIHILLYYKAS-TNIQD  166 (223)
T ss_dssp             --------------------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC-SCCCC
T ss_pred             --------------------------------------------------ccchhhhhcCCcchhhhhccccce-eeecc
Confidence                                                              455555556677888999999999 88999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCC
Q 005095          438 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP  489 (715)
Q Consensus       438 ~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~  489 (715)
                      .+|+||||+|+..|+.+++++|+++|++++.    +|.+|+||||+|. .|+
T Consensus       167 ~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~----~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         167 TEGNTPLHLACDEERVEEAKLLVSQGASIYI----ENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHCC-TTH
T ss_pred             CCCCceeccccccCcHHHHHHHHHCCCCCCC----CCCCCCCHHHHHH-CCC
Confidence            9999999999999999999999999999984    9999999999985 343

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-34  Score=291.34  Aligned_cols=266  Identities=21%  Similarity=0.231  Sum_probs=231.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV  242 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~  242 (715)
                      +.|+||.|++.|+.++|++||+.+. +++.+.+..|+||||+|+..|+.+++++|++  .+.+.+..+..+.+|.+.|+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~-din~~~~~~g~tpL~~A~~~~~~eiv~~L~~--~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCC-CcCccCCCCCCCHHHHHHHcCCHHHhhhhcc--ccccccccccccchhhHHHhh
Confidence            4589999999999999999998764 4555656789999999999999999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcc----------ccccccHHHHHHHcCC
Q 005095          243 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDAGL  312 (715)
Q Consensus       243 ~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~----------~~~g~t~L~~A~~~g~  312 (715)
                      .+..+....++++..+.. ..+..+.|+++.|+..|+...++.+++...+++..          +..|.||||+|+++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             cCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC
Confidence            999999999999987764 67889999999999999999999999987776543          3458999999999999


Q ss_pred             hhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHH
Q 005095          313 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  392 (715)
Q Consensus       313 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l  392 (715)
                      .+++++|+++....++..+..|.++++.+...+...                              ...++++.|+++  
T Consensus       161 ~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~i~~~Li~~--  208 (285)
T d1wdya_         161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS------------------------------DVEAITHLLLDH--  208 (285)
T ss_dssp             HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT------------------------------THHHHHHHHHHT--
T ss_pred             HHHHHHHHhccCCCcccccCCCCcccccccccccch------------------------------HHHHHHHHHHHC--
Confidence            999999998744335888999999998877654310                              012556666654  


Q ss_pred             hcCcccccccccCCchHHHHHHHcCCHHHHHHHHHh-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhh
Q 005095          393 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM-YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  468 (715)
Q Consensus       393 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~-~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  468 (715)
                         +++++.++..|.||||.|++.|+.++|++|+++ |.+ ++.+|.+|+||||+|+++|+.+++++|+++||++|.
T Consensus       209 ---ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         209 ---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             ---TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             ---CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence               667788889999999999999999999999986 667 889999999999999999999999999999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.6e-35  Score=300.86  Aligned_cols=147  Identities=16%  Similarity=0.186  Sum_probs=111.6

Q ss_pred             ChHHHHHHHc-CCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhc------CCCcccccccCCCChH
Q 005095          164 YAPLHLAALK-GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNL------MTPEDLALRNKVGNTA  236 (715)
Q Consensus       164 ~T~Lh~Aa~~-g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~------~~g~~i~~~d~~G~Tp  236 (715)
                      .||||+|+.. |..++++ +|.+.+.+  ...+.+|+||||+||..|+.++|+.|+..      ..|+|+|.+|.+|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~-~l~~~~~n--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITE-PITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCS-CCSTTTTT--TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred             CChHHHHHHhCCCHHHHH-HHHhcCCC--cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee
Confidence            3788866654 5555555 44343332  22235699999999999999998877531      1688999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCCccccccccHHHHHHHcCCh
Q 005095          237 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT---KEEDLKEEDRIELLVAVIDAGLY  313 (715)
Q Consensus       237 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g---a~~~~~~~~g~t~L~~A~~~g~~  313 (715)
                      ||+|+..|+.++|++|+++|++++ .+|.+|.|||++|+..++.++++++...+   ..++..+..+.++.+.+...+..
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             eccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccc
Confidence            999999999999999999999875 78888999999999999999988887664   34566677777888777776654


Q ss_pred             h
Q 005095          314 D  314 (715)
Q Consensus       314 ~  314 (715)
                      +
T Consensus       157 ~  157 (277)
T d2fo1e1         157 D  157 (277)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-34  Score=283.20  Aligned_cols=222  Identities=16%  Similarity=0.161  Sum_probs=180.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc---cccCCCChHHHHHH
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA---LRNKVGNTALCFAA  241 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~---~~d~~G~TpLh~Aa  241 (715)
                      ||||+||..|+.+.++.||+..+..++.+ |.+|+||||+|+..|+.++|++|++  +|++++   ..+..|.||+|+|+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHT--TCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccchhhh--hhccccccccccccccccccccc
Confidence            79999999999999998888877776654 8889999999999999999999998  788775   44667888999999


Q ss_pred             HcCcHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHH
Q 005095          242 VSGVTKIAEVMVNKNRELP-SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI  320 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~-~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  320 (715)
                      ..+..++++.++..+.... ...+..+.||++.++..++.+++++|++.|.+.+.++..|+||||+|+..|+.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccc
Confidence            9899999888888876542 245677888999999999999999999888888888888888888888888888888888


Q ss_pred             hhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCccccc
Q 005095          321 QHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIG  400 (715)
Q Consensus       321 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~  400 (715)
                      +.++..++.+|.+|                                                                  
T Consensus       159 ~~~~~~in~~d~~g------------------------------------------------------------------  172 (229)
T d1ixva_         159 GLGKSAVNWQDKQG------------------------------------------------------------------  172 (229)
T ss_dssp             TTTCCCSCCCCTTS------------------------------------------------------------------
T ss_pred             cccccccccccccc------------------------------------------------------------------
Confidence            87755445555444                                                                  


Q ss_pred             ccccCCchHHHHHHHcCCHHHHHHHHH-hCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 005095          401 ELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  465 (715)
Q Consensus       401 ~~~~~g~t~Lh~A~~~g~~eiv~~Ll~-~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  465 (715)
                            .||||+|++.|+.++|++|++ .|++ ++.+|.+|+||||+|+.   .+++++|+++|+|
T Consensus       173 ------~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         173 ------WTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             ------CCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ------CCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence                  455555555677889999996 4888 78889999999999984   5799999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.9e-35  Score=301.43  Aligned_cols=260  Identities=16%  Similarity=0.113  Sum_probs=209.5

Q ss_pred             cCCHHHHHHHHhhCccchhh-------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCc
Q 005095          173 KGDWDFARNFFNLNPEAVCV-------RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  245 (715)
Q Consensus       173 ~g~~~~v~~LL~~~~~~~~~-------~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~  245 (715)
                      ..+.+.++.++.........       +.+.++.||||.||..|+.++|++||+  +|+|+|.+|.+|.||||+|+..|+
T Consensus         8 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~--~Gadvn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             HhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcHHHHHHhcCC
Confidence            34455666666544322111       112345699999999999999999999  899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcc
Q 005095          246 TKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  325 (715)
Q Consensus       246 ~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  325 (715)
                      .++|++|+++|.+.. ..+..+.|||+.|+..++.++++.|+++|+..+..+.++.+++++|+..++.+.++.++.....
T Consensus        86 ~eiv~~Ll~~~~~~~-~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~  164 (291)
T d1s70b_          86 VDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (291)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             ceeeeeecccccccc-cccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccc
Confidence            999999999999875 7788999999999999999999999999999999999999999999999999999998875433


Q ss_pred             cceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccC
Q 005095          326 LAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK  405 (715)
Q Consensus       326 ~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~  405 (715)
                      ........+..+.+.                                              .....+.....+....+..
T Consensus       165 ~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         165 DIEAARKEEERIMLR----------------------------------------------DARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             CHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHTCCCCCCCTTT
T ss_pred             ccccccccccccccc----------------------------------------------cchhhhcccccccccccCC
Confidence            211111111111110                                              1111111223344556678


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhh
Q 005095          406 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAG  485 (715)
Q Consensus       406 g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~  485 (715)
                      |.||||.|+..|+.++++.|+++|++ ++.+|..|+||||+|+..|+.++|++|+++|+|++.    +|..|+||||+|+
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~----~d~~G~TaL~~A~  273 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVAD  273 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTTTSCC
T ss_pred             CCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHH
Confidence            99999999999999999999999999 789999999999999999999999999999999984    9999999999997


Q ss_pred             h
Q 005095          486 K  486 (715)
Q Consensus       486 ~  486 (715)
                      +
T Consensus       274 e  274 (291)
T d1s70b_         274 E  274 (291)
T ss_dssp             S
T ss_pred             H
Confidence            5

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.7e-35  Score=299.63  Aligned_cols=254  Identities=15%  Similarity=0.159  Sum_probs=204.9

Q ss_pred             CcHHHHHHH-cCCHHHHHHHHhcCCCccccccc-CCCChHHHHHHHcCcHHHHHHH--------HhcCCCCCccCCCCCC
Q 005095          199 DTALHIAAG-ARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVTKIAEVM--------VNKNRELPSIRGNKGA  268 (715)
Q Consensus       199 ~TpLh~Aa~-~g~~~iv~~Ll~~~~g~~i~~~d-~~G~TpLh~Aa~~g~~~iv~~L--------l~~g~~~~~~~d~~g~  268 (715)
                      +||||+|++ .|+.++++.|.+  .+.+  ..| .+|+||||+||..|+.++|++|        +++|++++ .+|.+|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~--~~~n--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~   75 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITR--ESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDEN   75 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCST--TTTT--TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSC
T ss_pred             CChHHHHHHhCCCHHHHHHHHh--cCCC--cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-ccCCCCC
Confidence            489996655 467777777666  4554  444 4699999999999999988776        56789997 7899999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcc--cceecCCCCCCHHHHHHhCCC
Q 005095          269 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ--LAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       269 tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      ||||+|+..|+.++|++|+++|++++.++.+|.|||+.|+..++.++++.+......  ..+..+..+.++.+.+...+.
T Consensus        76 TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
T d2fo1e1          76 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG  155 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS
T ss_pred             eeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999998776432  235678889999999988764


Q ss_pred             CcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHh---cCcccccccccCCchHHHHHHHcCCHHHHH
Q 005095          347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL---LDDSKIGELLRKPSRLLFTAVELGNVEFLM  423 (715)
Q Consensus       347 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~---~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~  423 (715)
                      ..    ..                           .....+.+....   ......+..+..|.||||.++..++.++++
T Consensus       156 ~~----~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~  204 (277)
T d2fo1e1         156 RD----QV---------------------------ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK  204 (277)
T ss_dssp             TT----HH---------------------------HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred             cc----cc---------------------------ccccccccccccccccccccccccccCCCCccccccccccccccc
Confidence            21    11                           111112111111   112234455678999999999999999999


Q ss_pred             HHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCc
Q 005095          424 VLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  492 (715)
Q Consensus       424 ~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~  492 (715)
                      +++.......+.+|..|+||||+|++.|+.+++++|+++|++++    .+|.+|+||||+|+++|+.+.
T Consensus       205 ~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin----~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         205 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----AVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             HHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----CCCSSSCCHHHHHHHTTCHHH
T ss_pred             cccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC----CcCCCCCCHHHHHHHcCCHHH
Confidence            98877666588899999999999999999999999999999987    499999999999999998543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.9e-33  Score=273.80  Aligned_cols=211  Identities=19%  Similarity=0.246  Sum_probs=180.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCC--ccCCCCCCCHHHHHHH
Q 005095          199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELP--SIRGNKGATPLCMAAL  276 (715)
Q Consensus       199 ~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~--~~~d~~g~tpLh~A~~  276 (715)
                      +||||+||..|+.++|+.|++. .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++  ...+..|.+|+|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH-CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            5899999999999999999986 678999999999999999999999999999999998874  3467789999999999


Q ss_pred             cCCHHHHHHHHhcCCCCC--ccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcch
Q 005095          277 LGHKEMIWYLYSVTKEED--LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  354 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~~~--~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  354 (715)
                      .+..++++.++..+.+.+  ..+..+.|+++.++..++.++++.|++.+... +.+|.                      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~----------------------  136 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDK----------------------  136 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT----------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCC----------------------
Confidence            999999999998887544  45667788888888888888888888777654 33333                      


Q ss_pred             hhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCcc
Q 005095          355 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  434 (715)
Q Consensus       355 ~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~  434 (715)
                                                                        .|.||||+|+..|+.+++++|++.+++.++
T Consensus       137 --------------------------------------------------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in  166 (229)
T d1ixva_         137 --------------------------------------------------FNQIPLHRAASVGSLKLIELLCGLGKSAVN  166 (229)
T ss_dssp             --------------------------------------------------TSCCHHHHHHHHTCHHHHHHHHTTTCCCSC
T ss_pred             --------------------------------------------------CCCCccchhhhccccccccccccccccccc
Confidence                                                              455666667777888999999999977789


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHH-cCcchhhhhcccCCCCchHHHHhhhh
Q 005095          435 KVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHLAGKL  487 (715)
Q Consensus       435 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~l~~~~d~~G~TpLh~A~~~  487 (715)
                      .+|.+|+||||+|+.+|+.+++++|++ .|++++.    +|.+|+||||+|+..
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~----~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALNE  216 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----CCTTSCCTGGGCSCH
T ss_pred             ccccccCCchhhhcccccHHHHHHHHHhcCCCCCC----cCCCCCCHHHHHhhH
Confidence            999999999999999999999999997 5999984    999999999999854

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-32  Score=278.69  Aligned_cols=249  Identities=17%  Similarity=0.169  Sum_probs=216.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  275 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~  275 (715)
                      +++|+||.|++.|+.++|++|++  +|+++|.++. .|.||||+|+..|+.+++++|++.+.... ..+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~--~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHH--CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-ccccccchhhHHHh
Confidence            35799999999999999999999  8999997764 79999999999999999999999999875 67889999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCccc---------ceecCCCCCCHHHHHHhCCC
Q 005095          276 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL---------AMARDGNGETALHVLARKPS  346 (715)
Q Consensus       276 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~~~  346 (715)
                      ..+..+...+++++..+....+..+.++++.|+..++...++.++....+.         ....+..|.||||+|++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC
Confidence            999999999999999888888899999999999999999999998875543         12345678999999999876


Q ss_pred             CcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHc----CCHHHH
Q 005095          347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVEL----GNVEFL  422 (715)
Q Consensus       347 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~----g~~eiv  422 (715)
                                                        .+++++|+++    .+.+++..+..|.++++.+...    +..+++
T Consensus       161 ----------------------------------~~~~~~Ll~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (285)
T d1wdya_         161 ----------------------------------VEVLKILLDE----MGADVNACDNMGRNALIHALLSSDDSDVEAIT  202 (285)
T ss_dssp             ----------------------------------HHHHHHHHHT----SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHH
T ss_pred             ----------------------------------HHHHHHHHhc----cCCCcccccCCCCcccccccccccchHHHHHH
Confidence                                              3566666553    4677888888888877766543    346799


Q ss_pred             HHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc-CcchhhhhcccCCCCchHHHHhhhhCCCC
Q 005095          423 MVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHKDLIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       423 ~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~-ga~~~~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      ++|+++|++ ++.+|..|+||||+|++.|+.+++++|++. |++++    .+|.+|+||||+|++.|+.+
T Consensus       203 ~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din----~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         203 HLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT----CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc----CCCCCCCCHHHHHHHcCCHH
Confidence            999999999 788999999999999999999999999985 88887    59999999999999999865

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=6.6e-32  Score=277.76  Aligned_cols=250  Identities=21%  Similarity=0.209  Sum_probs=205.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHH
Q 005095          161 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA  240 (715)
Q Consensus       161 ~~g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~A  240 (715)
                      .+|.||||.||..|+.++|++||+++.+ ++.+ |.+|.||||+|+..|+.++|++|++  +|.+.+..+..+.||||.|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~--~~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD-INYA-NVDGLTALHQACIDDNVDMVKFLVE--NGANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCB-CTTCCBHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC-CCcc-CCCCCcHHHHHHhcCCceeeeeecc--ccccccccccccccccccc
Confidence            4466999999999999999999987754 5554 8999999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          241 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV-TKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       241 a~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      +..++.++++.|+++|+... ..|..|.+|+++|+..++.+.++.++.. +.++......+..+.+.       .....+
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~  185 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR-------DARQWL  185 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             ccccccchhhcccccCcccc-cccccCccccccccccccchhccccccccccccccccccccccccc-------cchhhh
Confidence            99999999999999999875 7899999999999999999999999864 44433333222222222       122233


Q ss_pred             HhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccc
Q 005095          320 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  399 (715)
Q Consensus       320 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~  399 (715)
                      ...... ....+..|.||||.|+..|+                                  .++++.|++.     +.++
T Consensus       186 ~~~~~~-~~~~~~~g~t~L~~a~~~~~----------------------------------~~~~~~Ll~~-----g~di  225 (291)
T d1s70b_         186 NSGHIN-DVRHAKSGGTALHVAAAKGY----------------------------------TEVLKLLIQA-----RYDV  225 (291)
T ss_dssp             HHTCCC-CCCCTTTCCCHHHHHHHHTC----------------------------------HHHHHHHHTT-----TCCT
T ss_pred             cccccc-cccccCCCCChhhHHHHcCC----------------------------------hhhhcccccc-----eecc
Confidence            333333 35678899999999999876                                  3666666553     6778


Q ss_pred             cccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          400 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       400 ~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                      +.++..|+||||+|++.|+.++|++|+++|+| ++.+|..|+||||+|++    +++++|.+.....|
T Consensus       226 n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEELQKKQN  288 (291)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHHHHHHHTT
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHHHHhhhcc
Confidence            88899999999999999999999999999999 78999999999999975    68888887655433

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=254.11  Aligned_cols=219  Identities=20%  Similarity=0.208  Sum_probs=160.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcC--CCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 005095          197 NQDTALHIAAGARRTLFVQELVNLM--TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  274 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv~~Ll~~~--~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A  274 (715)
                      +|+||||+||..|+.++|+.|++..  .|++++.+|.+|+||||+|+..|+.+++++|+++|++.+ ..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccc-ccccccccccccc
Confidence            5778888888888888777776411  577888888888888888888888888888888887765 6777788888888


Q ss_pred             HHcCCHHHHHHHHhcCCC----CCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCccc
Q 005095          275 ALLGHKEMIWYLYSVTKE----EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFAS  350 (715)
Q Consensus       275 ~~~g~~~iv~~Ll~~ga~----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~  350 (715)
                      ...++.++++.+......    .+.......++|+.+.........+.|.....+...                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~----------------------  138 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA----------------------  138 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------------------
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccccc----------------------
Confidence            888888877777654332    223334445555555555555555554444333211                      


Q ss_pred             CcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCC
Q 005095          351 GSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYP  430 (715)
Q Consensus       351 ~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~  430 (715)
                                                                        .....+.+||+.|+..+..++++.+++++.
T Consensus       139 --------------------------------------------------~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  168 (228)
T d1k1aa_         139 --------------------------------------------------VDIKSGRSPLIHAVENNSLSMVQLLLQHGA  168 (228)
T ss_dssp             --------------------------------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             --------------------------------------------------ccccchhhHHHHHHHhhhhhhhhhhhhhcc
Confidence                                                              223356677777777888888888999888


Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCcc
Q 005095          431 NLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL  493 (715)
Q Consensus       431 d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~l  493 (715)
                      + .+.+|..|+||||+|+.+|+.+++++|+++|+|++.    +|.+|+||||+|+++|+.+.+
T Consensus       169 ~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~----~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         169 N-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             C-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHHH
T ss_pred             c-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhCCCcccc
Confidence            8 677899999999999999999999999999998874    899999999999988765543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-30  Score=252.30  Aligned_cols=201  Identities=19%  Similarity=0.149  Sum_probs=166.0

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHH
Q 005095          231 KVGNTALCFAAVSGVTKIAEVMVN----KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA  306 (715)
Q Consensus       231 ~~G~TpLh~Aa~~g~~~iv~~Ll~----~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~  306 (715)
                      ++|+||||+||..|+.++++.|++    .|++++ .+|.+|+||||+|+..|+.+++++|+++|++.+..+..|.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            369999999999999999888874    788875 788999999999999999999999999999999988889999999


Q ss_pred             HHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHH
Q 005095          307 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKR  386 (715)
Q Consensus       307 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~  386 (715)
                      |...++.++++.+.........                                                          
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  101 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTL----------------------------------------------------------  101 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSC----------------------------------------------------------
T ss_pred             ccccccccchhhhhhccccccc----------------------------------------------------------
Confidence            9988888888877665432100                                                          


Q ss_pred             HHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcch
Q 005095          387 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  466 (715)
Q Consensus       387 l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~  466 (715)
                                 ..+.....+.++|+.+.........+.|.....+.....+..|++|||.|+..+..++++.++++|.+.
T Consensus       102 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  170 (228)
T d1k1aa_         102 -----------DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV  170 (228)
T ss_dssp             -----------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -----------cccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc
Confidence                       011112344567888888888888899999888877778889999999999999999999999999887


Q ss_pred             hhhhcccCCCCchHHHHhhhhCCCC--ccccCCCchhhhHH
Q 005095          467 DLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQLRR  505 (715)
Q Consensus       467 ~~l~~~~d~~G~TpLh~A~~~~~~~--~l~l~~ga~~~~~~  505 (715)
                      +    .+|..|+||||+|+..|+.+  +++++.|++++.+.
T Consensus       171 ~----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d  207 (228)
T d1k1aa_         171 N----AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN  207 (228)
T ss_dssp             T----CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             c----cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            7    49999999999999999987  45677888776554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-30  Score=254.87  Aligned_cols=193  Identities=18%  Similarity=0.208  Sum_probs=143.5

Q ss_pred             CCCcHHHHHHHcCCHHHH----HHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 005095          197 NQDTALHIAAGARRTLFV----QELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC  272 (715)
Q Consensus       197 ~g~TpLh~Aa~~g~~~iv----~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh  272 (715)
                      +|+||||+|+..|+.+++    +++..  .++++|.+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~--~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh--CCCCcccCCCCCCcccccccccccccccccccccccccc-ccccccccccc
Confidence            478888888888875444    44444  577888888888888888888888888888888888875 67888888888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCc------cccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          273 MAALLGHKEMIWYLYSVTKEEDL------KEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       273 ~A~~~g~~~iv~~Ll~~ga~~~~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      .|+..|+.++++.|++.+.+...      ...+|.||||.|+..++.+++++|+..++.+....                
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~----------------  141 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE----------------  141 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC----------------
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccc----------------
Confidence            88888888888888887654322      22335556666665555555555555554432111                


Q ss_pred             CcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHH
Q 005095          347 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI  426 (715)
Q Consensus       347 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll  426 (715)
                                                                              +.+|.||||+|++.|+.+++++|+
T Consensus       142 --------------------------------------------------------~~~G~T~L~~A~~~g~~~~v~~Ll  165 (221)
T d1iknd_         142 --------------------------------------------------------PCNGRTALHLAVDLQNPDLVSLLL  165 (221)
T ss_dssp             --------------------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             --------------------------------------------------------ccCCCCccccccccccHHHHHHHH
Confidence                                                                    234667777777788899999999


Q ss_pred             HhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 005095          427 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  465 (715)
Q Consensus       427 ~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  465 (715)
                      ++|+| ++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       166 ~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         166 KCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             hcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99999 889999999999999999999999999988765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=249.50  Aligned_cols=188  Identities=15%  Similarity=0.134  Sum_probs=158.9

Q ss_pred             CCChHHHHHHHcCcH----HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHH
Q 005095          232 VGNTALCFAAVSGVT----KIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV  307 (715)
Q Consensus       232 ~G~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  307 (715)
                      +|+||||+|+..|+.    ++++.+...|++++ .+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.|||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            599999999999986    45566667888886 7899999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHH
Q 005095          308 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRL  387 (715)
Q Consensus       308 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l  387 (715)
                      +..++.++++.|++.+.....                                                           
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~-----------------------------------------------------------  100 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHL-----------------------------------------------------------  100 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS-----------------------------------------------------------
T ss_pred             cccccccccchhhhhcccccc-----------------------------------------------------------
Confidence            999999999999987654310                                                           


Q ss_pred             HHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCcchh
Q 005095          388 WEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  467 (715)
Q Consensus       388 ~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  467 (715)
                              ..........|.||||.|+..|+.+++++|++.+++.....+.+|+||||+|++.|+.+++++|+++|+|++
T Consensus       101 --------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~  172 (221)
T d1iknd_         101 --------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN  172 (221)
T ss_dssp             --------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             --------cccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc
Confidence                    001112234578999999999999999999999999666667889999999999999999999999999998


Q ss_pred             hhhcccCCCCchHHHHhhhhCCCC
Q 005095          468 LIASYKDENNNNMLHLAGKLAPPD  491 (715)
Q Consensus       468 ~l~~~~d~~G~TpLh~A~~~~~~~  491 (715)
                      .    +|.+|+||||+|++.++.+
T Consensus       173 ~----~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         173 R----VTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             C----CCTTCCCGGGGCTTSSCHH
T ss_pred             c----cCCCCCCHHHHHHHCCCHH
Confidence            4    9999999999999987643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.8e-28  Score=238.81  Aligned_cols=206  Identities=19%  Similarity=0.224  Sum_probs=132.9

Q ss_pred             HHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcC
Q 005095          177 DFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN  256 (715)
Q Consensus       177 ~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g  256 (715)
                      |+|++|++++++ ++.+.|.+|.||||+||..|+.+++++|++  .|++++.++..+.++++.++..++...........
T Consensus         3 ~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~--~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLD--AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHh--hcccccccccccccccccccccccccccccccccc
Confidence            556666654443 333335556666666666666666666666  56666666666666666666666555555555544


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCC
Q 005095          257 RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGET  336 (715)
Q Consensus       257 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  336 (715)
                      ..........|.++.+.+.........+.|.+.+++++.++..|.|||+.++..+..++++.+++.+.+           
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-----------  148 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-----------  148 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc-----------
Confidence            443334445555666666555555666666666665555555555555555555555555555555444           


Q ss_pred             HHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHc
Q 005095          337 ALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVEL  416 (715)
Q Consensus       337 pLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~  416 (715)
                                                                                    ++..|..|.||||+|+..
T Consensus       149 --------------------------------------------------------------~~~~d~~g~TpL~~A~~~  166 (209)
T d1ot8a_         149 --------------------------------------------------------------RDAQDDKDETPLFLAARE  166 (209)
T ss_dssp             --------------------------------------------------------------TTCCCTTCCCHHHHHHHT
T ss_pred             --------------------------------------------------------------ccccccccccccchhccc
Confidence                                                                          333445566777777778


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHhCCHHHHHHH
Q 005095          417 GNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLI  459 (715)
Q Consensus       417 g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  459 (715)
                      |+.++|++|+++|+| ++.+|..|+||||+|+++|+.++|++|
T Consensus       167 g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         167 GSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            889999999999999 788899999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=7.7e-32  Score=284.22  Aligned_cols=234  Identities=12%  Similarity=0.024  Sum_probs=132.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccC--CCCCCC
Q 005095          195 SRNQDTALHIAAGARRTLFVQE---LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR--GNKGAT  269 (715)
Q Consensus       195 d~~g~TpLh~Aa~~g~~~iv~~---Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~--d~~g~t  269 (715)
                      +..|.||||+||++||.+++++   |++  .|+++|.+|.+|+||||+||++||.++|++|+++|++++ ..  +.+|.|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~--~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-~~~~~~~g~t  163 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLT--SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-MAMIQAENYH  163 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH-HHHHSHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHh--CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-ccccccCCCC
Confidence            5566666666666666655544   455  566666666666666666666666666666666666654 22  234666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCC---CccccccccHHHHHHHcCChhHHHHHHhhCcccceecCC-------CCCCHHH
Q 005095          270 PLCMAALLGHKEMIWYLYSVTKEE---DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDG-------NGETALH  339 (715)
Q Consensus       270 pLh~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------~g~tpLh  339 (715)
                      |||+|+.+||.++|++|++.|++.   +..+.++.||++.|+.+|+.+++++|++.|++. +..+.       .+.++++
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~  242 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-AYAEIHEFEYGEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH-HHHHHCTTTTTTTTHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc-chHHHHHHHcCcHhhhHHH
Confidence            666666666666666666666543   233445566666666666666666666666543 11111       1112222


Q ss_pred             HHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCH
Q 005095          340 VLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNV  419 (715)
Q Consensus       340 ~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~  419 (715)
                      .+...+.       .+....+....+.     +...+.                  ..........+.++++.|+..|+.
T Consensus       243 ~~~~~~~-------~~~~~~l~~a~~~-----~~~~~~------------------~~~~~~~~~~~~~~l~~a~~~~~l  292 (346)
T d2ajaa1         243 ARHVNRL-------KEMHDAFKLSNPD-----GVFDLV------------------TKSECLQGFYMLRNLIRRNDEVLL  292 (346)
T ss_dssp             HHHHHHH-------HHHHTTTTTTSSS-----SCCCCS------------------SHHHHHHHHHHHHHHHHHCCGGGH
T ss_pred             HHhhccc-------hHHHHHHHHhccc-----ccHhHH------------------hcccccccchhhhHHHHHhcCChH
Confidence            2111100       0000000000000     000000                  000001112345789999999999


Q ss_pred             HHHHHHHHhCCCC----ccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 005095          420 EFLMVLIQMYPNL----IWKVDDHSRSMFHIAVVHRQEKIFNLIYEL  462 (715)
Q Consensus       420 eiv~~Ll~~~~d~----~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  462 (715)
                      +++++|++.+...    .+..+.+|+||||+|++.|+.++|++|++.
T Consensus       293 d~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            9999999877542    233456799999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=7.8e-29  Score=241.42  Aligned_cols=201  Identities=18%  Similarity=0.180  Sum_probs=145.0

Q ss_pred             HHHHHHHHhcCCCccccc-ccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 005095          211 TLFVQELVNLMTPEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV  289 (715)
Q Consensus       211 ~~iv~~Ll~~~~g~~i~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  289 (715)
                      .|+|++|++  +|+|+|. .|.+|+||||+||..|+.+++++|++.|++++ .++..+.+|++.++..++.+........
T Consensus         2 ~~~v~~Ll~--~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHH--CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccccccccccccccccc
Confidence            467777777  6777765 46677777777777777777777777777764 5667777777777777766655555443


Q ss_pred             CCC-CCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcch
Q 005095          290 TKE-EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR  368 (715)
Q Consensus       290 ga~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~  368 (715)
                      ... .......|.++.+.+.........+.|...                                              
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------------------------------------------  112 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITA----------------------------------------------  112 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT----------------------------------------------
T ss_pred             cccccccccccccccccccccccchhhhhhhhhh----------------------------------------------
Confidence            322 122223344444444444444444444433                                              


Q ss_pred             hccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 005095          369 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAV  448 (715)
Q Consensus       369 ~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~  448 (715)
                                                 +.+++..+..|.|||+.|+..|..++++.+++++.+ ++.+|..|.||||+|+
T Consensus       113 ---------------------------~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~  164 (209)
T d1ot8a_         113 ---------------------------DADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAA  164 (209)
T ss_dssp             ---------------------------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             ---------------------------cccccccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhc
Confidence                                       334445556677788888888889999999999999 7889999999999999


Q ss_pred             HhCCHHHHHHHHHcCcchhhhhcccCCCCchHHHHhhhhCCCCc
Q 005095          449 VHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  492 (715)
Q Consensus       449 ~~~~~~iv~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~~~~~~~~  492 (715)
                      .+|+.+++++|+++|+|++.    +|..|+||||+|+++|+.+.
T Consensus       165 ~~g~~~~v~~Ll~~gad~n~----~d~~g~Tpl~~A~~~~~~~i  204 (209)
T d1ot8a_         165 REGSYEASKALLDNFANREI----TDHMDRLPRDVASERLHHDI  204 (209)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999884    99999999999999998653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=3.1e-30  Score=271.80  Aligned_cols=234  Identities=13%  Similarity=0.031  Sum_probs=166.7

Q ss_pred             ccccccCCCChHHHHHHHcCcHHHHHH---HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccc--cc
Q 005095          225 DLALRNKVGNTALCFAAVSGVTKIAEV---MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--ED  299 (715)
Q Consensus       225 ~i~~~d~~G~TpLh~Aa~~g~~~iv~~---Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~--~~  299 (715)
                      +++.++..|.||||+||.+|+.+++++   |++.|++++ .+|.+|.||||+||+.||.++|++|+++|++++..+  .+
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            345567889999999999999887765   789999986 789999999999999999999999999999998876  46


Q ss_pred             cccHHHHHHHcCChhHHHHHHhhCccc--ceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhH
Q 005095          300 RIELLVAVIDAGLYDVALDLIQHHPQL--AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMH  377 (715)
Q Consensus       300 g~t~L~~A~~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh  377 (715)
                      |.||||+|+.+|+.+++++|++.++..  .+..+.+|.||+|.|+.+|+       .++++.|++.+.            
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~-------~~iv~~Ll~~ga------------  221 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH-------HNVINFLLDCPV------------  221 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHTTSHH------------
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCH-------HHHHHHHHhCCC------------
Confidence            999999999999999999999998764  23445667888999998886       455555554322            


Q ss_pred             HHHHHHHHHHHHHHHhcCccc--ccccccCCchHHHHHHHcCCHHHHHHHHHhCCCC-ccccC-------CCCCcHHHHH
Q 005095          378 LQALELVKRLWEQVLLLDDSK--IGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL-IWKVD-------DHSRSMFHIA  447 (715)
Q Consensus       378 ~a~~~~~~~l~~~~l~~~~~~--~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~d~-~~~~d-------~~G~T~Lh~A  447 (715)
                                     .....+  .......+.++++.++..+..+....+....++. .+..+       ..+.++|+.|
T Consensus       222 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a  286 (346)
T d2ajaa1         222 ---------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR  286 (346)
T ss_dssp             ---------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHH
Confidence                           111110  0111223345566665555555544444333221 11111       1245789999


Q ss_pred             HHhCCHHHHHHHHHcCcchhhh-hcccCCCCchHHHHhhhhCCCCcc
Q 005095          448 VVHRQEKIFNLIYELGAHKDLI-ASYKDENNNNMLHLAGKLAPPDRL  493 (715)
Q Consensus       448 ~~~~~~~iv~~Ll~~ga~~~~l-~~~~d~~G~TpLh~A~~~~~~~~l  493 (715)
                      +..++.+++++|++.+...... .+..+.+|+||||+|++.|+.+.+
T Consensus       287 ~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v  333 (346)
T d2ajaa1         287 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC  333 (346)
T ss_dssp             CCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred             hcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHH
Confidence            9999999999999987654321 123567899999999999998743

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=214.59  Aligned_cols=152  Identities=20%  Similarity=0.257  Sum_probs=143.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      +.||.||..|+.++|++||++++.+++.. |..|+||||+|+ .|+.+++++|++  .+.+++.++..|.+||+.|+..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~--~~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLK--QGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-cccccccccccc--ccccccccccccccccccccccc
Confidence            46999999999999999999888777765 899999999987 589999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhh
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  322 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  322 (715)
                      +.+++++++++|++++ .+|..|.||||+|++.|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999986 78999999999999999999999888 6899999999999999999999999999999976

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=212.22  Aligned_cols=153  Identities=19%  Similarity=0.202  Sum_probs=143.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      +|||+||..|+.++|++|++++.+ ++.+ |.+|.||||+|+ .|+.+++++|++  +|++++.++..|.|||+.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~--~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQ-NGFGRTALQVMK-LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCC-CTTSCCHHHHCC-SSCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCcc-CCcccccccccc-cccccccccccc--cccccccccccCccccccccccc
Confidence            899999999999999999987654 5554 999999999886 799999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CCCccccccccHHHHHHHcCChhHHHHHHhhC
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK-EEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  323 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  323 (715)
                      +.+.++.|++.+.+++ ..+..|.+|||+|+..++.+++++|+++++ +.+.+|.+|.||||+|++.++.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999986 789999999999999999999999999986 88999999999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=208.16  Aligned_cols=143  Identities=18%  Similarity=0.185  Sum_probs=137.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  279 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~  279 (715)
                      +|||+||..|+.++|++|++  +|+|++.+|.+|.||||+|+ .|+.+++++|+++|+++. .++..|.+||+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~--~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCCcCccCCcccccccccc-cccccccccccccccccc-cccccCcccccccccccc
Confidence            79999999999999999999  89999999999999999886 789999999999999986 789999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          280 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       280 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      .++++.|++.+.+++..+..|.+|+|.|+..++.+++++|+++++...+.+|.+|+||||+|++.++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999986678999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.3e-25  Score=204.23  Aligned_cols=150  Identities=23%  Similarity=0.162  Sum_probs=139.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHc
Q 005095          164 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS  243 (715)
Q Consensus       164 ~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~  243 (715)
                      .||||.||+.|+.++|++||+++++ ++  .|..|+||||+|+..++.++++.++.  ........+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-~~--~~~~g~t~L~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-FT--TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-CC--CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-cc--cccCCCcccccccccccccccccccc--cccccccccccccccccccccc
Confidence            3999999999999999999998764 33  38999999999999999999999999  6777777888999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHH
Q 005095          244 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  319 (715)
Q Consensus       244 g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~L  319 (715)
                      .+.+++++++++|++.. .+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.+|+.|++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999986 7899999999999999999999999999999999999999999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.9e-26  Score=233.79  Aligned_cols=198  Identities=14%  Similarity=0.111  Sum_probs=110.6

Q ss_pred             Ccccccc-cCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccc
Q 005095          223 PEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI  301 (715)
Q Consensus       223 g~~i~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  301 (715)
                      +.++|.. |.+|+||||+||..|+.++|++|+++|++++ .+|..|+||||.||..++..                    
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~--------------------  154 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNY--------------------  154 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHH--------------------
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccch--------------------
Confidence            4455544 6666666666666666666666666666664 56666666666666655410                    


Q ss_pred             cHHHHHHHcCCh-hHHHHHHhhCcccceecCCCCCCHHHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHH
Q 005095          302 ELLVAVIDAGLY-DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA  380 (715)
Q Consensus       302 t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~  380 (715)
                             ..+.+ ++++++..    ....+|..|+||||+++..+....   ...                       ++
T Consensus       155 -------~~~~~~~ll~~l~~----~~~~~d~~g~t~lh~~~~~~~~~~---~~~-----------------------~~  197 (301)
T d1sw6a_         155 -------DSGTFEALLDYLYP----CLILEDSMNRTILHHIIITSGMTG---CSA-----------------------AA  197 (301)
T ss_dssp             -------HTTCHHHHHHHHGG----GGGEECTTCCCHHHHHHHHHTSTT---CHH-----------------------HH
T ss_pred             -------hhhhHHHHHHHHhh----hhhhcccccCCHHHHHHHHhCccc---cHH-----------------------HH
Confidence                   01111 22222221    135667888888888876543110   011                       11


Q ss_pred             HHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcCCHHHHH-----HHHHhCCCCccccCCCCCcHHHHHHHhCCHHH
Q 005095          381 LELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLM-----VLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI  455 (715)
Q Consensus       381 ~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~-----~Ll~~~~d~~~~~d~~G~T~Lh~A~~~~~~~i  455 (715)
                      ......++.................+.++++.+........++     .++...   ++.+|.+|+||||+|+++|+.++
T Consensus       198 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~i  274 (301)
T d1sw6a_         198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISI  274 (301)
T ss_dssp             HHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHH
Confidence            1111222222222233333333444555566555444433332     233332   56789999999999999999999


Q ss_pred             HHHHHHcCcchhhhhcccCCCCchHHHHhh
Q 005095          456 FNLIYELGAHKDLIASYKDENNNNMLHLAG  485 (715)
Q Consensus       456 v~~Ll~~ga~~~~l~~~~d~~G~TpLh~A~  485 (715)
                      |++|+++|+++++    +|+.|+||||+|+
T Consensus       275 v~~Ll~~GAd~~~----~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         275 VDALLDYGADPFI----ANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHTTCCTTC----CCTTSCCGGGGTC
T ss_pred             HHHHHHCCCCCCC----CCCCCCCHHHHcC
Confidence            9999999999985    9999999999996

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=201.49  Aligned_cols=142  Identities=20%  Similarity=0.205  Sum_probs=132.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  279 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~  279 (715)
                      .+||.||..|+.++|+.||+. .+++++.+|..|+||||+|+. |+.+++++|++++.+++ ..+..|.+|++.|+..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~-~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHh-CCCCCCccCCCCCcccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            469999999999999999985 689999999999999999875 88999999999999986 788899999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          280 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       280 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      .+++++++++|++++.+|.+|.||||+|+..|+.+++++|+ .++++ +.+|.+|+||||+|++.|+
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999887 57775 8899999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.6e-24  Score=196.46  Aligned_cols=143  Identities=21%  Similarity=0.183  Sum_probs=135.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 005095          199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG  278 (715)
Q Consensus       199 ~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g  278 (715)
                      .||||.||+.|+.++|++||+  +|++++ .|..|+||||+|+..++.++++.++....... ..+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~--~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHH--cCCCcc-cccCCCcccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            499999999999999999999  789887 68999999999999999999999999888775 67888999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCHHHHHHhCCC
Q 005095          279 HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  346 (715)
Q Consensus       279 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  346 (715)
                      +.+++++++++|++.+.++.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+.+|+
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999986 8899999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-24  Score=224.85  Aligned_cols=192  Identities=11%  Similarity=0.095  Sum_probs=132.0

Q ss_pred             chhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCc-------HHHHHHHHhcCCCCCc
Q 005095          189 AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV-------TKIAEVMVNKNRELPS  261 (715)
Q Consensus       189 ~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~-------~~iv~~Ll~~g~~~~~  261 (715)
                      +++...|.+|+||||+||..|+.++|++|++  +|++++.+|..|+||||.|+..++       .+++++|.+.   + .
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~--~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~---~-~  171 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVK--HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---L-I  171 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---G-G
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh---h-h
Confidence            3444458899999999999999999999999  899999999999999999998776       2455555432   3 3


Q ss_pred             cCCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccceecCCCCCCH
Q 005095          262 IRGNKGATPLCMAALLGH----KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETA  337 (715)
Q Consensus       262 ~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  337 (715)
                      .+|..|+||||+++..+.    .+++++.++                         .++..+++.+..........+.++
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~~~~~~~~~~~~~~  226 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLD-------------------------ILMGWIVKKQNRPIQSGTNEKESK  226 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHH-------------------------HHHHHHHHGGGCCEEEC-------
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHH-------------------------HHHHHHHhcCCcchhcccccccch
Confidence            578899999999886543    344444332                         245666666665555566667777


Q ss_pred             HHHHHhCCCCcccCcchhhHhhhhhcCCcchhccCCchhHHHHHHHHHHHHHHHHhcCcccccccccCCchHHHHHHHcC
Q 005095          338 LHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELG  417 (715)
Q Consensus       338 Lh~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~lh~a~~~~~~~l~~~~l~~~~~~~~~~~~~g~t~Lh~A~~~g  417 (715)
                      ++.+......       ..                      ........++.       ..+|.+|..|+||||+|+++|
T Consensus       227 ~~~~~~~~~~-------~~----------------------~~~~~~~~~~~-------~~in~~D~~G~TpLh~A~~~g  270 (301)
T d1sw6a_         227 PNDKNGERKD-------SI----------------------LENLDLKWIIA-------NMLNAQDSNGDTCLNIAARLG  270 (301)
T ss_dssp             ---------C-------HH----------------------HHHCSHHHHHH-------HTTTCCCTTSCCHHHHHHHHC
T ss_pred             hHHHHhcchH-------HH----------------------HHHHhhHHHHh-------cCccCCCCCCCCHHHHHHHcC
Confidence            7766554321       00                      00000111221       235678899999999999999


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 005095          418 NVEFLMVLIQMYPNLIWKVDDHSRSMFHIAV  448 (715)
Q Consensus       418 ~~eiv~~Ll~~~~d~~~~~d~~G~T~Lh~A~  448 (715)
                      +.++|++|+++|++ ++.+|..|+||||+|+
T Consensus       271 ~~~iv~~Ll~~GAd-~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         271 NISIVDALLDYGAD-PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCGGGGTC
T ss_pred             CHHHHHHHHHCCCC-CCCCCCCCCCHHHHcC
Confidence            99999999999999 8999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-24  Score=191.12  Aligned_cols=120  Identities=19%  Similarity=0.130  Sum_probs=91.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCC-CHHHHHHH
Q 005095          198 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGA-TPLCMAAL  276 (715)
Q Consensus       198 g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~-tpLh~A~~  276 (715)
                      +.++||+||+.|+.++|++|++  +|++++.+|.+|.||||+|+ .|+.+++++|+++|++++ .++..|. ||||+|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~--~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHH--cCCccccccccccccccccc-cccccccccccccccccc-cccccccccccccccc
Confidence            4567888888888888888887  67788888888888887664 577888888888887775 4555544 57888888


Q ss_pred             cCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHh
Q 005095          277 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  321 (715)
Q Consensus       277 ~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  321 (715)
                      .|+.+++++|+++|++++.+|.+|.||||+|+++|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888888888888888888888888888888888888888877764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.3e-24  Score=190.76  Aligned_cols=106  Identities=25%  Similarity=0.256  Sum_probs=88.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 005095          199 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG  278 (715)
Q Consensus       199 ~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g  278 (715)
                      +|||++|++.|+.++|++|++  +|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~--~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT--TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHH--hhhccccccccccccccccccccccccccccccccceee-ecccccccchhhhhhcC
Confidence            478888888888888888888  788888888888888888888888888888888888876 67888888888888888


Q ss_pred             CHHHHHHHHhcCCCCCccccccccHHHHH
Q 005095          279 HKEMIWYLYSVTKEEDLKEEDRIELLVAV  307 (715)
Q Consensus       279 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  307 (715)
                      +.+++++|+++|+|++.+|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            88888888888888888888888888776

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-23  Score=185.93  Aligned_cols=121  Identities=21%  Similarity=0.146  Sum_probs=93.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  279 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~  279 (715)
                      ++||.||..|+.++|++|++  +|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~--~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH--cCCCccccccccccccccccccccccccccccccccccc-cccccCcccccccchhhH
Confidence            56778888888888888887  778888888888888888888888888888888887775 677788888888888888


Q ss_pred             HHHHHHHHhcCCCCCcccc-ccccHHHHH--HHcCChhHHHHHHhhC
Q 005095          280 KEMIWYLYSVTKEEDLKEE-DRIELLVAV--IDAGLYDVALDLIQHH  323 (715)
Q Consensus       280 ~~iv~~Ll~~ga~~~~~~~-~g~t~L~~A--~~~g~~~iv~~Ll~~~  323 (715)
                      .++|++|+++|++++..+. ++.||++.+  +++|+.+++++|+...
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            8888888888888776653 466765554  4667788888887653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-23  Score=183.20  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC-hHHHHHH
Q 005095          163 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN-TALCFAA  241 (715)
Q Consensus       163 g~T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~-TpLh~Aa  241 (715)
                      +.++||+||.+|+.++|++|++++. +++.+ |..|.||||+|+ .|+.+++++|++  +|++++.+|..|. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga-d~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~--~ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA-NPNAP-NSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC-CTTCC-CSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC-ccccc-cccccccccccc-cccccccccccc--ccccccccccccccccccccc
Confidence            4589999999999999999998754 45554 899999999775 799999999999  8999999999876 6999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 005095          242 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS  288 (715)
Q Consensus       242 ~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  288 (715)
                      +.|+.+++++|+++|++++ .+|..|+||||+|+++|+.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc-cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999986 899999999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=181.31  Aligned_cols=122  Identities=21%  Similarity=0.189  Sum_probs=109.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCccchhhccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCChHHHHHHHcC
Q 005095          165 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG  244 (715)
Q Consensus       165 T~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh~Aa~~g  244 (715)
                      ++||.||..|+.++|++|++++. +++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~-d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~--~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD-DPSLP-NDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS-SCCCC-CTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC-Ccccc-ccccccccccccccccccccccccc--cccccccccccCcccccccchhh
Confidence            68999999999999999998765 45554 8999999999999999999999999  79999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHhcC
Q 005095          245 VTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYSVT  290 (715)
Q Consensus       245 ~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~~g  290 (715)
                      +.+++++|+++|++++...+..|.||++++  ++.|+.+++++|++.+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999999754556789987765  5789999999998754

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.8e-22  Score=176.84  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=103.6

Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCCh
Q 005095          234 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY  313 (715)
Q Consensus       234 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  313 (715)
                      +|||++|++.|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc-cccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            589999999999999999999999986 7899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCcccceecCCCCCCHHHHHHh
Q 005095          314 DVALDLIQHHPQLAMARDGNGETALHVLAR  343 (715)
Q Consensus       314 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  343 (715)
                      +++++|+++|+++ +.+|.+|+||||+|..
T Consensus        82 ~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          82 SCVKLLLSKGADK-TVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHHTTCCCS-SSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhcccccc-eeeCCCCCCHHHHHhH
Confidence            9999999999996 8999999999998843

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.7e-21  Score=174.99  Aligned_cols=123  Identities=20%  Similarity=0.197  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccchhh----ccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCChHHH
Q 005095          166 PLHLAALKGDWDFARNFFNLNPEAVCV----RISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGNTALC  238 (715)
Q Consensus       166 ~Lh~Aa~~g~~~~v~~LL~~~~~~~~~----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~g~~i~~~d~~G~TpLh  238 (715)
                      .|+.|++.++...++.++..+.+....    ..+..|+||||+|++.   |+.++|++|++  +|++++.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH--cCCChhhhhhhhccccc
Confidence            345666666666666666554332111    0134466666666653   45666666666  56666666666666666


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 005095          239 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK  291 (715)
Q Consensus       239 ~Aa~~g~~~iv~~Ll~~g~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga  291 (715)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|++.|+.+++++|++.++
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCcccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            6666666666666666666664 566666666666666666666666666544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=8.8e-21  Score=173.76  Aligned_cols=126  Identities=20%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcc------cccccCCCChHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCCCH
Q 005095          200 TALHIAAGARRTLFVQELVNLMTPED------LALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATP  270 (715)
Q Consensus       200 TpLh~Aa~~g~~~iv~~Ll~~~~g~~------i~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~d~~g~tp  270 (715)
                      ..|+.|++.++...+..++.  .|.|      ....+..|+||||+|++.   |+.++|++|+++|++++ .+|.+|+||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g~Tp   84 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHH--cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhhccc
Confidence            47899999999999999988  5543      344567899999999975   67899999999999986 899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccccccccHHHHHHHcCChhHHHHHHhhCcccce
Q 005095          271 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAM  328 (715)
Q Consensus       271 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~  328 (715)
                      ||+||..|+.+++++|+++|++++.+|.+|.||||+|++.|+.+++++|++.++...+
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999998765433