Citrus Sinensis ID: 005116
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | 2.2.26 [Sep-21-2011] | |||||||
| Q6S004 | 1030 | Kinesin-related protein 6 | yes | no | 0.464 | 0.322 | 0.573 | 1e-102 | |
| Q99661 | 725 | Kinesin-like protein KIF2 | yes | no | 0.450 | 0.444 | 0.565 | 1e-101 | |
| Q95LP1 | 671 | Kinesin-like protein KIF2 | N/A | no | 0.450 | 0.479 | 0.565 | 1e-100 | |
| Q922S8 | 721 | Kinesin-like protein KIF2 | yes | no | 0.450 | 0.446 | 0.553 | 7e-99 | |
| Q5ZKV8 | 706 | Kinesin-like protein KIF2 | yes | no | 0.633 | 0.640 | 0.418 | 2e-98 | |
| P70096 | 718 | Kinesin-like protein KIF2 | yes | no | 0.443 | 0.441 | 0.564 | 3e-98 | |
| Q62909 | 671 | Kinesin-like protein KIF2 | yes | no | 0.450 | 0.479 | 0.559 | 8e-98 | |
| Q5T7B8 | 1368 | Kinesin-like protein KIF2 | no | no | 0.484 | 0.252 | 0.521 | 9e-98 | |
| Q5R9Y9 | 744 | Kinesin-like protein KIF2 | no | no | 0.651 | 0.625 | 0.411 | 1e-97 | |
| Q9WV63 | 705 | Kinesin-like protein KIF2 | no | no | 0.633 | 0.641 | 0.412 | 1e-97 |
| >sp|Q6S004|KIF6_DICDI Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1 | Back alignment and function desciption |
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Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/347 (57%), Positives = 246/347 (70%), Gaps = 15/347 (4%)
Query: 196 KIKVVVRKRPLNKKELAKNEEDIIETY-SNSLTVHETKLKVDLTEYVEKHEFVFDAVLNE 254
+I+V VRKRPLNKKE+AK+E+DIIE L V+E K K+DL++++EKH+F FD V +E
Sbjct: 453 RIRVCVRKRPLNKKEIAKSEKDIIEVLPKKDLIVNEPKTKLDLSKFIEKHKFTFDGVFDE 512
Query: 255 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM-----KPLPLKASRDILRL 309
+N +VY T P+V IF + KATCFAYGQTGSGKT+T L A+RDI
Sbjct: 513 SANNYQVYLHTAYPLVDSIFHKGKATCFAYGQTGSGKTHTQMGQQGDGLYALAARDIFHR 572
Query: 310 MHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETI 369
+ ++ Q Q+ +SFFEIYGGKLFDLL++RKKL RE+ Q V IVGL E V+ + +
Sbjct: 573 LETYFKDQ-LQVCISFFEIYGGKLFDLLNERKKLACRENELQNVVIVGLSEKHVTSPQEL 631
Query: 370 KELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSE 429
I G+ RSTG+TG N +SSRSHAILQ+++K K +L GK SFIDLAGSE
Sbjct: 632 MNCIIDGNKIRSTGSTGVNSDSSRSHAILQISLKNI------KTNKLHGKFSFIDLAGSE 685
Query: 430 RGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSR 489
RG+DT DNDKQTR EGA+INKSLLALKECIRALD H PFR S LT+VL+DSFVGNSR
Sbjct: 686 RGSDTYDNDKQTRKEGADINKSLLALKECIRALDQSSKHTPFRQSTLTQVLKDSFVGNSR 745
Query: 490 TVMISCISPSSGCCEHTLNTLRYADRVKSL--SKGNNPKKDILSSTI 534
TVMI+ ISP+ EHTLNTLRYADRVK L S+ N+ KK + + I
Sbjct: 746 TVMIANISPNQSSSEHTLNTLRYADRVKELGTSESNSNKKPVATYNI 792
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Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q99661|KIF2C_HUMAN Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2 | Back alignment and function description |
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| >sp|Q95LP1|KIF2C_MACFA Kinesin-like protein KIF2C OS=Macaca fascicularis GN=KIF2C PE=2 SV=1 | Back alignment and function description |
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| >sp|Q922S8|KIF2C_MOUSE Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5ZKV8|KIF2A_CHICK Kinesin-like protein KIF2A OS=Gallus gallus GN=KIF2A PE=2 SV=2 | Back alignment and function description |
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| >sp|P70096|KIF2C_CRIGR Kinesin-like protein KIF2C OS=Cricetulus griseus GN=KIF2C PE=1 SV=2 | Back alignment and function description |
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| >sp|Q62909|KIF2C_RAT Kinesin-like protein KIF2C OS=Rattus norvegicus GN=Kif2c PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5T7B8|KIF24_HUMAN Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF24 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R9Y9|KIF2A_PONAB Kinesin-like protein KIF2A OS=Pongo abelii GN=KIF2A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9WV63|KIF2A_RAT Kinesin-like protein KIF2A OS=Rattus norvegicus GN=Kif2a PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| 255550012 | 712 | kif4, putative [Ricinus communis] gi|223 | 0.969 | 0.971 | 0.872 | 0.0 | |
| 224070899 | 689 | predicted protein [Populus trichocarpa] | 0.952 | 0.986 | 0.853 | 0.0 | |
| 359482934 | 717 | PREDICTED: kinesin-like protein KIF2A-li | 0.978 | 0.974 | 0.829 | 0.0 | |
| 224054352 | 721 | predicted protein [Populus trichocarpa] | 0.950 | 0.941 | 0.811 | 0.0 | |
| 13536983 | 703 | BY-2 kinesin-like protein 10 [Nicotiana | 0.974 | 0.990 | 0.773 | 0.0 | |
| 356550537 | 701 | PREDICTED: kinesin-like protein KIF2A-li | 0.970 | 0.988 | 0.803 | 0.0 | |
| 356556177 | 701 | PREDICTED: kinesin-like protein KIF2A-li | 0.970 | 0.988 | 0.800 | 0.0 | |
| 357454965 | 700 | BY-inesin-like protein [Medicago truncat | 0.969 | 0.988 | 0.766 | 0.0 | |
| 449448040 | 685 | PREDICTED: kinesin-like protein KIF2A-li | 0.949 | 0.989 | 0.762 | 0.0 | |
| 297830186 | 688 | kinesin motor family protein [Arabidopsi | 0.959 | 0.995 | 0.746 | 0.0 |
| >gi|255550012|ref|XP_002516057.1| kif4, putative [Ricinus communis] gi|223544962|gb|EEF46477.1| kif4, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1235 bits (3196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/698 (87%), Positives = 658/698 (94%), Gaps = 6/698 (0%)
Query: 17 VHHQRQWSSENFLESSSNGRWLQSAGLQHLQQSSATGTIPPLQDYNFYGGGGGGQGSRMY 76
VHHQRQ+S +NFL++SSNGRWLQSAGLQHLQ SS++ +IPPLQDYNFYGGGGGGQG RMY
Sbjct: 18 VHHQRQYS-DNFLDTSSNGRWLQSAGLQHLQNSSSS-SIPPLQDYNFYGGGGGGQGMRMY 75
Query: 77 RNAQRGFGGGNEFYMEPSTPPVSSRPSSQRKSGEQSPNEFSPGLLDLHSFDTELLPEMPV 136
RNAQR F G NE Y EP+TPPVSSRPSSQRK+GE SPNEFSPGLLDLHSFDTELLPEMPV
Sbjct: 76 RNAQRSFNGANELYGEPTTPPVSSRPSSQRKNGEDSPNEFSPGLLDLHSFDTELLPEMPV 135
Query: 137 PGLYDSSSLFNPVRGRSFDDSEPHIANNKQTGRARGLPENNLLKSFAADKEKANASSVAK 196
P LYDSSSLF+PVRGRSFDD+EP+I+NNKQTGRA LP+NNLLKSFAA+KEKA SSVAK
Sbjct: 136 PSLYDSSSLFHPVRGRSFDDAEPYISNNKQTGRAPALPDNNLLKSFAAEKEKA--SSVAK 193
Query: 197 IKVVVRKRPLNKKELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 256
IKVVVRKRPLNKKELAKNEEDII+T SNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV
Sbjct: 194 IKVVVRKRPLNKKELAKNEEDIIDTLSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEV 253
Query: 257 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRS 316
SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYR+
Sbjct: 254 SNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRN 313
Query: 317 QGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKG 376
QGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIK+LIEKG
Sbjct: 314 QGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKDLIEKG 373
Query: 377 SSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTD 436
+++RSTGTTGANEESSRSHAILQLAIKRS DG+ESKPPRLVGKLSFIDLAGSERGADTTD
Sbjct: 374 NATRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPPRLVGKLSFIDLAGSERGADTTD 433
Query: 437 NDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCI 496
NDKQTRMEGAEINKSLLALKECIRALDND+ HIPFRGSKLTEVLRDSFVGNSRTVMISCI
Sbjct: 434 NDKQTRMEGAEINKSLLALKECIRALDNDKSHIPFRGSKLTEVLRDSFVGNSRTVMISCI 493
Query: 497 SPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSPYED 556
SPSSG CEHTLNTLRYADRVKSLSKGN KKDILS+ +NLKESTT PLSS LPT+S ++
Sbjct: 494 SPSSGSCEHTLNTLRYADRVKSLSKGNTSKKDILSAPLNLKESTTMPLSSVLPTSSNIDE 553
Query: 557 D-TDAWPEQNERDDFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQ 615
D TDAW EQ+ERDDFDASEDSYE EK +W ++GK+E F+L +++D+L + PNGQT+WK+
Sbjct: 554 DITDAWAEQDERDDFDASEDSYEQEKPIWKENGKVESFSLSTSEDKLWR-PNGQTKWKDL 612
Query: 616 PKSGFKNSNSDDNLSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYV 675
KS KNS+SDD+LSALLQEEEDLVNAHRKQVEDTMNIV+EEMNLLVEADQPGNQLDDY+
Sbjct: 613 SKSDLKNSHSDDDLSALLQEEEDLVNAHRKQVEDTMNIVREEMNLLVEADQPGNQLDDYI 672
Query: 676 SRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVLVSSG 713
+RLNAILSQKAAGI+QLQ +LAHFQKRLKEHNVL+SSG
Sbjct: 673 TRLNAILSQKAAGILQLQNRLAHFQKRLKEHNVLISSG 710
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070899|ref|XP_002303287.1| predicted protein [Populus trichocarpa] gi|222840719|gb|EEE78266.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359482934|ref|XP_002284593.2| PREDICTED: kinesin-like protein KIF2A-like [Vitis vinifera] gi|297743274|emb|CBI36141.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224054352|ref|XP_002298217.1| predicted protein [Populus trichocarpa] gi|222845475|gb|EEE83022.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|13536983|dbj|BAB40710.1| BY-2 kinesin-like protein 10 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|356550537|ref|XP_003543642.1| PREDICTED: kinesin-like protein KIF2A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356556177|ref|XP_003546403.1| PREDICTED: kinesin-like protein KIF2A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357454965|ref|XP_003597763.1| BY-inesin-like protein [Medicago truncatula] gi|355486811|gb|AES68014.1| BY-inesin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449448040|ref|XP_004141774.1| PREDICTED: kinesin-like protein KIF2A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297830186|ref|XP_002882975.1| kinesin motor family protein [Arabidopsis lyrata subsp. lyrata] gi|297328815|gb|EFH59234.1| kinesin motor family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| TAIR|locus:2093382 | 684 | AT3G16060 [Arabidopsis thalian | 0.927 | 0.967 | 0.711 | 1.6e-246 | |
| TAIR|locus:2089358 | 794 | KINESIN-13A [Arabidopsis thali | 0.812 | 0.730 | 0.535 | 3.2e-175 | |
| DICTYBASE|DDB_G0267404 | 1030 | kif6 "kinesin family member 6" | 0.694 | 0.481 | 0.414 | 2.3e-93 | |
| UNIPROTKB|F1SEB0 | 1304 | KIF24 "Uncharacterized protein | 0.518 | 0.283 | 0.484 | 2.7e-91 | |
| UNIPROTKB|F1S346 | 725 | KIF2C "Uncharacterized protein | 0.480 | 0.473 | 0.529 | 1.2e-89 | |
| UNIPROTKB|Q5T7B8 | 1368 | KIF24 "Kinesin-like protein KI | 0.519 | 0.271 | 0.487 | 1.8e-89 | |
| UNIPROTKB|B7Z6Q6 | 684 | KIF2C "cDNA FLJ54088, highly s | 0.457 | 0.478 | 0.545 | 1.9e-89 | |
| UNIPROTKB|B7Z7M6 | 612 | KIF2C "cDNA FLJ53680, highly s | 0.457 | 0.534 | 0.545 | 1.9e-89 | |
| UNIPROTKB|Q99661 | 725 | KIF2C "Kinesin-like protein KI | 0.457 | 0.451 | 0.545 | 1.9e-89 | |
| UNIPROTKB|F1PD03 | 725 | KIF2C "Uncharacterized protein | 0.480 | 0.473 | 0.524 | 2.4e-89 |
| TAIR|locus:2093382 AT3G16060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2375 (841.1 bits), Expect = 1.6e-246, P = 1.6e-246
Identities = 489/687 (71%), Positives = 550/687 (80%)
Query: 32 SSNGRWLQSAGLQHLQQSSATGTIPPLQDYNFYXXXXXXX--XSRMYRNAQRGFGGGNEF 89
S N + S+ + LQ + DY +Y +R Y+NAQRG NEF
Sbjct: 19 SDNPLDMSSSNGRWLQSTGLQHFQSSANDYGYYAGGQGGGGQAARGYQNAQRG----NEF 74
Query: 90 YMEXXXXXXXXXXXXQRKSGEQSPNEFSPGLLDLHSFDTELLPEMPVPGLYDSSSLFNPV 149
+ E QRK+ ++S EFSPGLLDLHSFDTELLPE+PV D SLFNP
Sbjct: 75 FGEPTTPQYGARPTNQRKNNDES--EFSPGLLDLHSFDTELLPEIPVSNQLDGPSLFNPS 132
Query: 150 RGRSFDDSEPHIANNKQTGRARGLPENNLLKSFAADKEKANASSVAKIKVVVRKRPLNKK 209
+G+SFDD E A NKQ R+R L EN AA+KE+ NA VAKIKVVVRKRPLNKK
Sbjct: 133 QGQSFDDFE---AYNKQPNRSRVLAEN-----LAAEKERMNA--VAKIKVVVRKRPLNKK 182
Query: 210 ELAKNEEDIIETYSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPI 269
E KNEEDI++T++N LTVHETKLKVDLT YVEKHEFVFDAVL+EEVSNDEVYRETVEP+
Sbjct: 183 ESTKNEEDIVDTHANCLTVHETKLKVDLTAYVEKHEFVFDAVLDEEVSNDEVYRETVEPV 242
Query: 270 VPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRSQGFQLFVSFFEIY 329
VP+IFQR KATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYR+QGFQLFVSFFEIY
Sbjct: 243 VPLIFQRIKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIY 302
Query: 330 GGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKXXXXXXXXXXXANE 389
GGKL+DLLS+RKKLCMREDGKQQVCIVGLQEY+VSD + I ELIE+ ANE
Sbjct: 303 GGKLYDLLSERKKLCMREDGKQQVCIVGLQEYRVSDTDAIMELIERGSATRSTGTTGANE 362
Query: 390 ESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEIN 449
ESSRSHAILQLAIK+S +G++SKPPRLVGKLSFIDLAGSERGADTTDNDKQTR+EGAEIN
Sbjct: 363 ESSRSHAILQLAIKKSVEGNQSKPPRLVGKLSFIDLAGSERGADTTDNDKQTRLEGAEIN 422
Query: 450 KSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNT 509
KSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSF+GNSRTVMISCISPSSG CEHTLNT
Sbjct: 423 KSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFMGNSRTVMISCISPSSGSCEHTLNT 482
Query: 510 LRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSPYEDDT-DAWPEQNERD 568
LRYADRVKSLSKGN KKD+ SST+NL+EST PLSSALPT S ++DD + W E+N D
Sbjct: 483 LRYADRVKSLSKGNASKKDVSSSTMNLRESTKIPLSSALPTPSNFDDDVNEMWTEEN--D 540
Query: 569 DFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDN 628
+FDAS+ YE +K +W K+GKLE Q+++ KP Q + ++ P+ K SNSDDN
Sbjct: 541 EFDASD--YEQDKQMWKKNGKLEPSYNGMAQERIPKPTI-QMKSRDMPRPDMKKSNSDDN 597
Query: 629 LSALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAG 688
L+ALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLD Y+SRLN ILSQKAAG
Sbjct: 598 LNALLQEEEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDGYISRLNTILSQKAAG 657
Query: 689 IMQLQTQLAHFQKRLKEHNVLVSS-GY 714
I+QLQ +LAHFQKRL+EHNVLVS+ GY
Sbjct: 658 ILQLQNRLAHFQKRLREHNVLVSTTGY 684
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| TAIR|locus:2089358 KINESIN-13A [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0267404 kif6 "kinesin family member 6" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SEB0 KIF24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S346 KIF2C "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5T7B8 KIF24 "Kinesin-like protein KIF24" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7Z6Q6 KIF2C "cDNA FLJ54088, highly similar to Kinesin-like protein KIF2C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B7Z7M6 KIF2C "cDNA FLJ53680, highly similar to Kinesin-like protein KIF2C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q99661 KIF2C "Kinesin-like protein KIF2C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PD03 KIF2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 714 | |||
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 0.0 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-131 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-113 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-110 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 5e-95 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 4e-84 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-80 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 3e-78 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 3e-78 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 3e-73 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 3e-73 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-66 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 2e-60 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 3e-60 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 8e-59 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 2e-53 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 5e-53 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 6e-43 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-28 |
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
Score = 537 bits (1385), Expect = 0.0
Identities = 209/329 (63%), Positives = 257/329 (78%), Gaps = 15/329 (4%)
Query: 196 KIKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNE 254
KI V VRKRPLN KEL+K E D++ SN ++TVHE K KVDLT+Y+EKH F FD V +E
Sbjct: 2 KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDE 61
Query: 255 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTM------KPLPLKASRDILR 308
V+N+EVYR TV+P++P +F+ ATCFAYGQTGSGKTYTM + L A+RDI R
Sbjct: 62 AVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFR 121
Query: 309 LMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVET 368
L+ + + VSFFEIYGGKLFDLL+DRK+L + EDGK V IVGL E V+ V+
Sbjct: 122 LLAQP--NDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDE 179
Query: 369 IKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGS 428
+ ELIE G+S R+TG+TGAN++SSRSHAILQ+ +K K +L+GKLSFIDLAGS
Sbjct: 180 LLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNK------KLNKLLGKLSFIDLAGS 233
Query: 429 ERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNS 488
ERGADT+++D+QTR EGAEINKSLLALKECIRAL +++ H+PFRGSKLT+VLRDSF+GNS
Sbjct: 234 ERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNS 293
Query: 489 RTVMISCISPSSGCCEHTLNTLRYADRVK 517
+TVMI+ ISPS+ CEHTLNTLRYADRVK
Sbjct: 294 KTVMIATISPSASSCEHTLNTLRYADRVK 322
|
KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.39 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 96.34 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.46 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 90.33 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.3 | |
| PRK06620 | 214 | hypothetical protein; Validated | 87.28 | |
| PRK12377 | 248 | putative replication protein; Provisional | 86.88 | |
| PRK06526 | 254 | transposase; Provisional | 86.67 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 86.43 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 86.04 | |
| PRK08116 | 268 | hypothetical protein; Validated | 86.0 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 85.96 | |
| PRK09087 | 226 | hypothetical protein; Validated | 85.23 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 85.07 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 85.03 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 85.01 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 84.22 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 83.94 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 83.92 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 83.42 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 83.38 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 83.16 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 82.72 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 82.69 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 82.68 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 82.05 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 81.41 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 80.46 |
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-102 Score=845.01 Aligned_cols=601 Identities=39% Similarity=0.555 Sum_probs=470.5
Q ss_pred CchhhhcccchhcccccCCCCCCC--------CCccccCCCCCCcch---hhhhhhhcccCCCCccccCCC--CCCCCC-
Q 005116 35 GRWLQSAGLQHLQQSSATGTIPPL--------QDYNFYGGGGGGQGS---RMYRNAQRGFGGGNEFYMEPS--TPPVSS- 100 (714)
Q Consensus 35 ~rw~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~- 100 (714)
.+|++.++.+|...++.+...... .+|++.++. +++.+ +.+. ++|+++-.-++ ..-+ +|++.+
T Consensus 34 veW~E~~~~kgKe~~le~i~~lnp~l~~~~~~~~~~lp~~~-~~~~a~~~~~~~-~n~~i~~~~~~-~~~rs~~~tg~~~ 110 (676)
T KOG0246|consen 34 VEWVEKGETKGKELDLEEILLLNPELYSDLEHPIPNLPLKR-PASTAINRKGIE-ANRTIYESIEM-IPQRSQRATGSSC 110 (676)
T ss_pred EEhhhccccccccCCHHHHhhcChhhcccccCCCCCccccc-cccchhhhhhhh-hhhhccccccc-chhhccccccccc
Confidence 489999999999999888877766 567777762 23323 4444 67776622222 2222 443322
Q ss_pred ------CCCccCCCC-CCCCCCCCCc-cccccccc-cCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccCCcCC
Q 005116 101 ------RPSSQRKSG-EQSPNEFSPG-LLDLHSFD-TELLPEMPVPGLYDSSSLFNPVRGRSFDDSEPHIANNKQTGRAR 171 (714)
Q Consensus 101 ------~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 171 (714)
.|+...+.. |..++.+.++ ..+.|.++ +|.|.+..... ..++| ..+.+..+.-+.++...+-.+....+
T Consensus 111 ~~~~~~~P~~~~~~~~p~~~~~~~a~~~rks~~v~e~e~l~e~re~~-r~~~~-~~r~~r~~~~~~d~~npn~e~~~mi~ 188 (676)
T KOG0246|consen 111 KRLETALPSQRIFPPQPKSTGTAAAASARKSHAVKEVEKLQEQREKR-REPSP-RMRSRRKSAQDVDPSNPNWEFAQMIR 188 (676)
T ss_pred ccccccCCcccCCCCCCcccccchhhhhhhcccccchHHHHHHHHHh-hccCc-cccccchhhcccCCCCCchHHHHHHH
Confidence 455555555 8889999998 88999999 99998877766 67777 55544433333332221111111111
Q ss_pred CCCCccccchhhhhhhhcCCCCCCCeEEEEEeCCCCchhhhcCCCCeEEE-cCCeEEEecccccccccccccceeEEeee
Q 005116 172 GLPENNLLKSFAADKEKANASSVAKIKVVVRKRPLNKKELAKNEEDIIET-YSNSLTVHETKLKVDLTEYVEKHEFVFDA 250 (714)
Q Consensus 172 ~~p~~~~~~~~~~~~e~~~~~~~~~IkV~VRvRPl~~~E~~~~~~~~i~~-~~~~v~v~~~~~kv~~~~~~~~~~F~FD~ 250 (714)
.-...--..++. . ..+...++|+||||+||++++|....+.++|++ ..+.++||+|+.+||++.|++++.|.||+
T Consensus 189 ~~r~~L~~~pls-~---~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDy 264 (676)
T KOG0246|consen 189 EYREQLDSSPLS-M---GDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDY 264 (676)
T ss_pred HHhhhhcccccc-c---CCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEee
Confidence 111110000000 1 123467899999999999999999999999999 56899999999999999999999999999
Q ss_pred ecCCCCChHHHHHHhhhhhHHHHhcCCceEEEeeccCCCCCccccc------------CCChhhHHHHHHHHhh-hccCc
Q 005116 251 VLNEEVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMK------------PLPLKASRDILRLMHH-TYRSQ 317 (714)
Q Consensus 251 VF~~~asQeeVy~~~v~plV~~vl~G~N~tvfAYGqTGSGKTyTM~------------Gl~~~a~~dIf~~i~~-~~~~~ 317 (714)
+||+.++|+.||+.+++|||+.+|+|..+||||||||||||||||. |++..+++|+|..+.. .|...
T Consensus 265 aFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~ 344 (676)
T KOG0246|consen 265 AFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKL 344 (676)
T ss_pred ecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhc
Confidence 9999999999999999999999999999999999999999999994 5888999999999988 88889
Q ss_pred ceEEEEEEEEEeCCeeecccCCcccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeE
Q 005116 318 GFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAI 397 (714)
Q Consensus 318 ~~~V~vS~~EIYnE~v~DLL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaI 397 (714)
++.|++||||||+++|||||+++++|+++||++++|+|+||+|..|.+++|++++|+.|++.|+++.|.+|..|||||+|
T Consensus 345 ~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAv 424 (676)
T KOG0246|consen 345 DLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAV 424 (676)
T ss_pred ceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCCeeEEEEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccc
Q 005116 398 LQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLT 477 (714)
Q Consensus 398 f~I~v~~~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLT 477 (714)
|+|.++.. .....+||++||||||+||+++++.+++++++||++|||||+||++||+||.+++.|+|||.||||
T Consensus 425 fQIilr~~------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLT 498 (676)
T KOG0246|consen 425 FQIILRKH------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLT 498 (676)
T ss_pred EeeeeecC------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHH
Confidence 99999864 225789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCC-cceeEEEEecCCCCCChHhHHHHHHHHHHhhccccCCCCCc-ccccccccccccccCCCCCCCCCCCCCC
Q 005116 478 EVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKK-DILSSTINLKESTTAPLSSALPTTSPYE 555 (714)
Q Consensus 478 rLLrdsLgG-nsrT~mIa~ISP~~~~~eETLsTLrfA~Rak~i~~~~~~~~-~~~~~~~~l~e~~~~~~~~~~~~~~~~e 555 (714)
++|||||.| |++||||+||||+..+|++||||||||+|+|++.....+.. .+. +.....+..
T Consensus 499 qVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~~~~~~~------------~~~~~~p~~---- 562 (676)
T KOG0246|consen 499 QVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGGPSGRMPR------------AIGEETPNS---- 562 (676)
T ss_pred HHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCCccccCcc------------cccCCCccc----
Confidence 999999999 99999999999999999999999999999999976554311 000 000000000
Q ss_pred CCCCCCCcCCcCcccccCcCCcchhhhhhhcccCcccCCCCcchhhcCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHH
Q 005116 556 DDTDAWPEQNERDDFDASEDSYEPEKLVWMKSGKLEQFNLPSTQDQLRKPPNGQTRWKEQPKSGFKNSNSDDNLSALLQE 635 (714)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilee 635 (714)
+.. +..+. .+. +.... ++. .. . ..+......++-+.
T Consensus 563 ~~~----------------s~~~~-~~~----------~~~~~-~~~---~~-------e------~~~~~~~~~~~~~~ 598 (676)
T KOG0246|consen 563 DPE----------------SNSET-QPL----------NPSRD-EEP---SS-------E------PNEENSEREEASEH 598 (676)
T ss_pred cch----------------hcccc-CCC----------Ccccc-ccc---cc-------C------ccccccchhhhhhh
Confidence 000 00000 000 00000 000 00 0 00001233334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005116 636 EEDLVNAHRKQVEDTMNIVKEEMNLLVEADQPGNQLDDYVSRLNAILSQKAAGIMQLQTQLAHFQKRLKEHNVLV 710 (714)
Q Consensus 636 ee~~~~~hr~~ie~~~e~~k~e~~ll~~vD~~~~~id~y~~~L~~il~~k~~~i~~L~~~l~~Fr~~L~eee~l~ 710 (714)
++.++..++..+.....|++-+..+..+.+.+.+|++-+..+.+.+|++|++.+..||.++..+...+.+|+-++
T Consensus 599 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~s~l~q~~~~~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 599 REVLVKEVRNSLNRSEKWIRLDRPIQSKTESVSSDMPIVAHKAESDLEQEEDLLAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred HHHHHhhhccccccccccccccchhhhcccccccCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 677888888888888888887666666778999999999999999999999999999999999999999888664
|
|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 714 | ||||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 4e-96 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 2e-94 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 2e-94 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-89 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 6e-79 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 8e-47 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-46 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 5e-44 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 5e-44 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 6e-44 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 6e-43 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-43 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 8e-42 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 3e-41 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 3e-41 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 4e-41 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 4e-41 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 4e-41 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 4e-41 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 6e-41 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 6e-41 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 8e-40 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 2e-39 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 5e-39 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 2e-38 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 1e-37 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 1e-37 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 1e-37 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-37 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-37 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-37 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 3e-37 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-37 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 5e-37 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 6e-36 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 8e-36 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 9e-36 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 4e-35 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 5e-35 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-34 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 6e-31 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-30 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 3e-30 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-29 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-29 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 6e-29 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 1e-28 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-28 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 7e-28 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 8e-28 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-27 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-27 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 1e-27 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-27 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 5e-27 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 7e-22 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 9e-09 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 3e-08 |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
|
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
Score = 515 bits (1329), Expect = e-179
Identities = 162/359 (45%), Positives = 226/359 (62%), Gaps = 19/359 (5%)
Query: 197 IKVVVRKRPLNKKELAKNEEDIIETYSN-SLTVHETKLKVDLTEYVEKHEFVFDAVLNEE 255
IKVVVRKRPL++ E K + DII +N +L + E + KVD+T+Y+E+HEF+ D V ++
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 256 VSNDEVYRETVEPIVPIIFQR-TKATCFAYGQTGSGKTYTM-----------KPLPLKAS 303
V N VY T++P++ +++ +CFAYGQTGSGKTYTM + A+
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 304 RDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEYKV 363
DI ++ + +F+SF+EIY GKL+DLL RK + E+GK++V + L+ +V
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRV 181
Query: 364 SDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFI 423
E + + G R G N+ESSRSHAIL + +K +GK++FI
Sbjct: 182 LTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKN------TSLGKIAFI 235
Query: 424 DLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS 483
DLAGSERGADT +KQT+ +GA IN+SLLALKECIRA+D+D+ HIPFR S+LT+VLRD
Sbjct: 236 DLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDI 295
Query: 484 FVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTA 542
FVG S+++MI+ ISP+ CCE TLNTLRY+ RVK+ K I + + L S T
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTG 354
|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.93 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.9 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.88 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.56 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 89.97 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 88.51 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 85.38 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 84.09 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 82.76 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 81.57 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 80.3 |
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-85 Score=717.97 Aligned_cols=322 Identities=59% Similarity=0.858 Sum_probs=275.6
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 271 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~ 271 (714)
..++|+|+|||||++.+|...++.++|.+.+ +.+.+++|+.+++.+.+.+.+.|.||+||+++++|++||+.+++|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 4789999999999999999988888888754 678888888888887777889999999999999999999999999999
Q ss_pred HHhcCCceEEEeeccCCCCCcccccC------------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCCeeecccC
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTMKP------------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLS 338 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM~G------------l~~~a~~dIf~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~ 338 (714)
.+|+|||+||||||||||||||||.| ++++++.+||..+.. ......|.|+|||+|||||+|+|||+
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCC
Confidence 99999999999999999999999976 568889999998875 33467899999999999999999999
Q ss_pred CcccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEE
Q 005116 339 DRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVG 418 (714)
Q Consensus 339 ~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~s 418 (714)
++.++.++||++++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|.|.+. ....|
T Consensus 209 ~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~~s 280 (387)
T 2heh_A 209 KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--------GRMHG 280 (387)
T ss_dssp TTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS--------SSEEE
T ss_pred CCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC--------Ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999853 24689
Q ss_pred EEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccc-cCCcceeEEEEecC
Q 005116 419 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGNSRTVMISCIS 497 (714)
Q Consensus 419 kL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrds-LgGnsrT~mIa~IS 497 (714)
+|+|||||||||..++...++++++|++.||+||++|++||.||..++.||||||||||+||||+ |||||+|+||+|||
T Consensus 281 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~is 360 (387)
T 2heh_A 281 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATIS 360 (387)
T ss_dssp EEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEEC
T ss_pred EEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeC
Confidence 99999999999988887777788889999999999999999999999999999999999999999 59999999999999
Q ss_pred CCCCChHhHHHHHHHHHHhhccccC
Q 005116 498 PSSGCCEHTLNTLRYADRVKSLSKG 522 (714)
Q Consensus 498 P~~~~~eETLsTLrfA~Rak~i~~~ 522 (714)
|+..+++|||+||+||+|||+|+..
T Consensus 361 P~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 361 PGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CBGGGHHHHHHHHHHHHHHCC----
T ss_pred CccchHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999753
|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 714 | ||||
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 3e-89 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 4e-88 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 1e-80 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-80 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 2e-75 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 4e-75 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-70 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-68 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 3e-68 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Score = 281 bits (720), Expect = 3e-89
Identities = 185/340 (54%), Positives = 229/340 (67%), Gaps = 23/340 (6%)
Query: 196 KIKVVVRKRPLNKKELAKNEEDIIETYSNS-LTVHETKLKVDLTEYVEKHEFVFDAVLNE 254
+I V VRKRPLNK+ELAK E D+I S L VHE KLKVDLT+Y+E F FD +E
Sbjct: 31 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 90
Query: 255 EVSNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKP-------------LPLK 301
SN+ VYR T P+V IF+ KATCFAYGQTGSGKT+TM +
Sbjct: 91 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 150
Query: 302 ASRDILRLMHHTYRSQGFQLFVSFFEIYGGKLFDLLSDRKKLCMREDGKQQVCIVGLQEY 361
+ L YR+ +++V+FFEIY GK+FDLL+ + KL + ED +QQV +VGLQEY
Sbjct: 151 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEY 210
Query: 362 KVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLS 421
V+ + + ++I GS+ R++G T AN SSRSHA Q+ ++ RL GK S
Sbjct: 211 LVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--------RLHGKFS 262
Query: 422 FIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLR 481
+DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VLR
Sbjct: 263 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 322
Query: 482 DSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLS 520
DSF+G NSRT MI+ ISP CE+TLNTLRYADRVK LS
Sbjct: 323 DSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.09 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.37 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.07 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 80.56 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.29 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=4.6e-79 Score=661.58 Aligned_cols=320 Identities=58% Similarity=0.858 Sum_probs=273.1
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEcC-CeEEEecccccccccccccceeEEeeeecCCCCChHHHHHHhhhhhHH
Q 005116 193 SVAKIKVVVRKRPLNKKELAKNEEDIIETYS-NSLTVHETKLKVDLTEYVEKHEFVFDAVLNEEVSNDEVYRETVEPIVP 271 (714)
Q Consensus 193 ~~~~IkV~VRvRPl~~~E~~~~~~~~i~~~~-~~v~v~~~~~kv~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~ 271 (714)
..++|+|+|||||+++.|+..++.++|.+.+ ..+.+++++..++.+.....+.|.||+||+++++|++||+.++.|+|+
T Consensus 28 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~ 107 (362)
T d1v8ka_ 28 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 107 (362)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCEEEEEEeCCCChHHhhCCCceEEEECCCcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999998865 566777888777777777788999999999999999999999999999
Q ss_pred HHhcCCceEEEeeccCCCCCcccccC------------CChhhHHHHHHHHhh-hccCcceEEEEEEEEEeCCeeecccC
Q 005116 272 IIFQRTKATCFAYGQTGSGKTYTMKP------------LPLKASRDILRLMHH-TYRSQGFQLFVSFFEIYGGKLFDLLS 338 (714)
Q Consensus 272 ~vl~G~N~tvfAYGqTGSGKTyTM~G------------l~~~a~~dIf~~i~~-~~~~~~~~V~vS~~EIYnE~v~DLL~ 338 (714)
.+|+|||+||||||||||||||||+| +.++++.+||..+.. ......|.|+|||+|||||+++|||+
T Consensus 108 ~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~ 187 (362)
T d1v8ka_ 108 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 187 (362)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCeEEeccc
Confidence 99999999999999999999999976 568899999998876 33456899999999999999999999
Q ss_pred CcccceeEecCCCcEEEeccEEEEeCCHHHHHHHHHHhhhcCCccCCCCCCCCCCCeeEEEEEEEEecCCCCCCCCeeEE
Q 005116 339 DRKKLCMREDGKQQVCIVGLQEYKVSDVETIKELIEKGSSSRSTGTTGANEESSRSHAILQLAIKRSADGSESKPPRLVG 418 (714)
Q Consensus 339 ~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSHaIf~I~v~~~~~~~~~~~~~~~s 418 (714)
+...+.+++++.+++++.|++++.|.+++|++.+|..|.++|.++.|.+|..|||||+||+|.|... ....+
T Consensus 188 ~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~--------~~~~~ 259 (362)
T d1v8ka_ 188 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------GRLHG 259 (362)
T ss_dssp TTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------SSEEE
T ss_pred CCccccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEec--------ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999753 34678
Q ss_pred EEEEEECCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccccc-cCCcceeEEEEecC
Q 005116 419 KLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGNSRTVMISCIS 497 (714)
Q Consensus 419 kL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aL~~vI~AL~~~~~hIPyRdSKLTrLLrds-LgGnsrT~mIa~IS 497 (714)
+|+|||||||||..++...++.+..|+..||+||++|++||.+|.+++.|||||+||||+||||+ +||||+|+||+|||
T Consensus 260 ~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~~i~~vs 339 (362)
T d1v8ka_ 260 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMIS 339 (362)
T ss_dssp EEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEEC
T ss_pred eEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEEEEEEeC
Confidence 99999999999988887777777889999999999999999999999999999999999999999 68899999999999
Q ss_pred CCCCChHhHHHHHHHHHHhhccc
Q 005116 498 PSSGCCEHTLNTLRYADRVKSLS 520 (714)
Q Consensus 498 P~~~~~eETLsTLrfA~Rak~i~ 520 (714)
|+..+++||++||+||+|||+|.
T Consensus 340 p~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 340 PGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp CBGGGHHHHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999983
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|