Citrus Sinensis ID: 005139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710--
Protein Sequence
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEVRQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccHHHHHHHHHccccccccccccccccccHHHHHHcHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccHEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHcccHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mpgiimddiheegvvselngnstpvkensvsnkspkstpcpqsprdqpdgegvdTSIEQLYENVcdmqssdqspsrhsfgsdgeesriDSELRHlvggemreveimeeeevekpeddshsissskkgsssgskksgkleksqsagtksissghskkvshsgmdsevssktnskgkslpekppidkgvkksnagatpmkkrkgklhkgqdvseagldkpglgpLLLKQARELISSGDNPQKALELALRAAKSfeigangkpsLELVMCLHVIAAIYCSlgqyneaipvleqsieipvieeGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQkqvlgetdprvGETCRYLAEAHVQALQFSEAQKFCQMALDIhkdngspaslEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAndqdaevasvdcsigdtylslsrydEAGFAYQKALTAFktnkgenhpaVASVFVRLADMYNrtgklreskSYCENALRiyekpvpgvppeeiasgltdVSSIYESMNELEQAIKLLQKALKIyndapgqqstvAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEqecgpyhpdtlgvysNLAGTYdaigreeklgtanpdvdDEKRRLAELLKEAGRVRSRKAQSLETLLDAnsrvnndgievrq
Flexible Loop (DISEMBL)
mpgiimddihEEGVVSelngnstpvkensvsnkspkstpcpqsprdqpdGEGVDTSIEQLYENVCDMQSSDQSPSRhsfgsdgeesridsELRHLVGGEMREVEIMEeeevekpeddshsissskkgsssgskksgkleksqsagtksissghskkvshsgmdsevssktnskgkslpekppidkgvkksnagatpmkkrkgklhkgqdvseagldkpgLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAfktnkgenhpAVASVFVRLADMYNRtgklresksyCENALRIyekpvpgvppeEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEklgtanpdvddekRRLAELLKeagrvrsrkaqsletlldansrvnndgievrq
Low Complexity Region (SEG)
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGemreveimeeeevekpeDDshsissskkgsssgskksgkleksqsAGTksissghskkvshsgMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAgldkpglgplllkQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEVRQ
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************************************************************************************************LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH**************RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV****IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG********************************************************
Disordered Region (DISOPRED)
*PGI*************************************************DTSIEQLYE*************************IDSELRHLVGGEMREV*****************************************************************************PPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA*************
Disordered Region (DISEMBL)
MPGIIMDDIHEEGVVSELNGN******************************GVDTSIEQLYENVC***********************DSELRHLVGGEMREVEIM*************************************************************************KPPIDKG*************************EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEVRQ
Disordered Region (DISPRO)
********IHE***********************************QPDGEGVDTSIEQLYENVCDMQ******************RIDSELRHLVGGEMREVEIMEEEEVEKP************************************************************KSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVN********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDxxxxxxxxxxxxxxxxxxxxxxxxxxxxPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDxxxxxxxxxxxxxxxxxxxxxKAQSLETLLDANSRVNNDGIEVRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	712	2.2.26 [Sep-21-2011]
Q5PQM2	619	Kinesin light chain 4 OS=	yes	no	0.220	0.253	0.276	1e-10
Q9DBS5	619	Kinesin light chain 4 OS=	yes	no	0.219	0.252	0.278	2e-10
P46822	540	Kinesin light chain OS=Ca	no	no	0.330	0.435	0.254	3e-10
Q9NSK0	619	Kinesin light chain 4 OS=	yes	no	0.220	0.253	0.270	5e-10
Q2HJJ0	616	Kinesin light chain 4 OS=	yes	no	0.219	0.253	0.265	7e-10
Q05090	686	Kinesin light chain OS=St	no	no	0.220	0.228	0.276	2e-09
P46824	508	Kinesin light chain OS=Dr	yes	no	0.296	0.415	0.259	2e-09
Q9H0B6	622	Kinesin light chain 2 OS=	no	no	0.269	0.308	0.252	2e-09
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.435	0.236	0.227	2e-09
O88448	599	Kinesin light chain 2 OS=	no	no	0.269	0.320	0.247	3e-09

>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYER 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G  +  VA  +  +   Y   G YS++   +K  +++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYSEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.
Rattus norvegicus (taxid: 10116)

>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYES 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
             G  +  VA  +  +   Y   G YS++   +K  ++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILT 407

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Mus musculus (taxid: 10090)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 347 PRVGETCRYLA-----EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           P   ET + L      E  + A QF++     QMA   +     PA L     R L  L+
Sbjct: 159 PVTNETLQELGFGPEDEEDMNASQFNQPTPANQMAASANVGYEIPARL-----RTLHNLV 213

Query: 402 CE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            +  ++G +E A  L    L  +   +     +VA++   +   Y   ++Y EA     +
Sbjct: 214 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANLLNE 273

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           AL+  +   GE+HPAVA+    LA ++ + GK ++++  C+ AL I EK V G    ++A
Sbjct: 274 ALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREK-VLGDDHPDVA 332

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGIEAQMGVMYYMLGNYSD 576
             L +++ + ++  + E+  K  ++AL+IY    G     VA  +  +   Y   G Y +
Sbjct: 333 KQLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKE 392

Query: 577 SYDSFKNAISK 587
           + + +K  +++
Sbjct: 393 AEELYKQILTR 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK
Sbjct: 251 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGK 310

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  Q+AL IY  
Sbjct: 311 YKEAEPLCQRALEIREK-VLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEG 369

Query: 550 APGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G  +  VA  +  +   Y   G Y+++   +K  +++
Sbjct: 370 QLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
           VA++   +   Y   ++Y EA      AL+  ++  G +HPAVA+    LA +Y + GK 
Sbjct: 249 VATMLNILALVYRGQNKYKEAALLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKY 308

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
           +E++  C+ AL I EK V G    ++A  L +++ + ++  + E   +  ++AL IY   
Sbjct: 309 KEAEPLCQRALEIREK-VLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQ 367

Query: 551 PGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            G  +  VA  +  +   Y   G Y+++   +K  +++
Sbjct: 368 LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Bos taurus (taxid: 9913)

>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EAG     AL   +   G +HPAVA+    LA +Y + GK
Sbjct: 255 DVATMLNILALVYRDQNKYKEAGNLLHDALAIREKTLGPDHPAVAATLNNLAVLYGKRGK 314

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK V G    ++A  L +++ + ++  + E+     Q+AL+IY  
Sbjct: 315 YKEAEPLCKRALEIREK-VLGKDHPDVAKQLNNLALLCQNQGKYEEVEWYYQRALEIYEK 373

Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y  +   +K  +++
Sbjct: 374 KLGPDDPNVAKTKNNLAAAYLKQGKYKAAETLYKQVLTR 412

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 16/227 (7%)

Query: 386 PASLEEAADRRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDT 441
           PA L     R L  L+ +  ++G +E A  L    L  +   +     +VA++   +   
Sbjct: 183 PARL-----RTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALV 237

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   ++Y EA      AL+      GENHPAVA+    LA +Y + GK ++++  C+ AL
Sbjct: 238 YRDQNKYKEAANLLNDALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRAL 297

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGI 560
            I EK V G    ++A  L +++ + ++  + ++  K  Q+AL IY    G     VA  
Sbjct: 298 EIREK-VLGKDHPDVAKQLNNLALLCQNQGKYDEVEKYYQRALDIYESKLGPDDPNVAKT 356

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLR-----AIGERKSAFFGVA 602
           +  +   Y   G Y+++   +K  +++       AI  +    + VA
Sbjct: 357 KNNLAGCYLKQGRYTEAEILYKQVLTRAHEREFGAIDSKNKPIWQVA 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Drosophila melanogaster (taxid: 7227)

>sp|Q9H0B6|KLC2_HUMAN Kinesin light chain 2 OS=Homo sapiens GN=KLC2 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 6/198 (3%)

Query: 395 RRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
           R L  L+ +  ++G +E A  L    L  +   +     +VA++   +   Y   ++Y E
Sbjct: 199 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 258

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510
           A      AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL I EK +  
Sbjct: 259 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 318

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGIEAQMGVMYY 569
             P ++A  L++++ + ++  + E+     ++AL+IY    G     VA  +  +   Y 
Sbjct: 319 FHP-DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 377

Query: 570 MLGNYSDSYDSFKNAISK 587
             G Y D+   +K  +++
Sbjct: 378 KQGKYQDAETLYKEILTR 395

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 152/352 (43%), Gaps = 42/352 (11%)

Query: 271  IAAIYCSLGQY-------NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ 323
            +A +Y +LG++       ++A+  L++S+EI       +H     + H QL   Y    +
Sbjct: 926  LADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLH-QLAGVYVQSKK 984

Query: 324  LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH--- 380
              N+   Y   LE+ +   G    RV      LA  + +  +F +A++  + +L I    
Sbjct: 985  FGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQKS 1044

Query: 381  -KDNGSPASLEEAADRRL--------------------MGLICETKGDHEAALEHLVLAS 419
             +  GS         R L                    +G++   + + E A E  +  S
Sbjct: 1045 ARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETA-ETFLKRS 1103

Query: 420  MTM----IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
            + M    +  D      S++ ++   Y    +YD+A   Y++AL   +     +HP++A 
Sbjct: 1104 LEMRERVLGADHPDCAQSIN-NLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1162

Query: 476  VFVRLADMYNRTGKLRESKSYCENALRIYEKPV-PGVPPEEIASGLTDVSSIYESMNELE 534
                LA +Y R GKL ++    E A+ I +K   P  P   +A+ L +++ +Y  M +  
Sbjct: 1163 TVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHP--SVATALVNLAVLYCQMKKQA 1220

Query: 535  QAIKLLQKALKIYNDAPGQQSTVAG-IEAQMGVMYYMLGNYSDSYDSFKNAI 585
            +A  L ++A+KIY D+ G+     G     + V+ Y  G++  + + +K A+
Sbjct: 1221 EASPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDFEKAAELYKRAM 1272

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|O88448|KLC2_MOUSE Kinesin light chain 2 OS=Mus musculus GN=Klc2 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 6/198 (3%)

Query: 395 RRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
           R L  L+ +  ++G +E A  L    L  +   +     +VA++   +   Y   ++Y +
Sbjct: 198 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 257

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510
           A      AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL I EK +  
Sbjct: 258 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 317

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGIEAQMGVMYY 569
             P ++A  L++++ + ++  + E+     ++AL+IY    G     VA  +  +   Y 
Sbjct: 318 FHP-DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 376

Query: 570 MLGNYSDSYDSFKNAISK 587
             G Y D+   +K  +++
Sbjct: 377 KQGKYQDAETLYKEILTR 394

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	712
255540685	767	kinesin light chain, putative [Ricinus c	0.997	0.925	0.774	0.0
359491584	757	PREDICTED: uncharacterized protein LOC10	0.985	0.927	0.764	0.0
449477406	736	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.990	0.957	0.721	0.0
449440678	736	PREDICTED: uncharacterized protein LOC10	0.990	0.957	0.720	0.0
356507244	761	PREDICTED: uncharacterized protein LOC10	0.987	0.923	0.692	0.0
356518977	753	PREDICTED: uncharacterized protein LOC10	0.988	0.934	0.680	0.0
357461993	767	Kinesin light chain [Medicago truncatula	0.988	0.917	0.651	0.0
357461995	795	Kinesin light chain [Medicago truncatula	0.988	0.885	0.651	0.0
224133522	624	predicted protein [Populus trichocarpa]	0.849	0.969	0.754	0.0
359488843	710	PREDICTED: uncharacterized protein LOC10	0.952	0.954	0.663	0.0

>gi|255540685|ref|XP_002511407.1| kinesin light chain, putative [Ricinus communis] gi|223550522|gb|EEF52009.1| kinesin light chain, putative [Ricinus communis]

 Score = 1110 bits (2870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/766 (77%), Positives = 647/766 (84%), Gaps = 56/766 (7%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQ---------PDGE 51
           MPGI+MD  +EE +V+E+N NS P+KEN++SNKSP+ST  PQSP            P GE
Sbjct: 1   MPGIVMDGNNEEAIVNEMNDNSVPIKENAMSNKSPRSTLSPQSPCSNSVDLPAGGVPVGE 60

Query: 52  --------------------GVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSE 91
                               GVDTSIEQLYENVCDMQSSD SPSRHSFGSDGEESRIDSE
Sbjct: 61  LTVDEVVVNEVAADETSVHGGVDTSIEQLYENVCDMQSSDLSPSRHSFGSDGEESRIDSE 120

Query: 92  LRHLVGGEMREVEIMEEEEVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISS 151
           LRHLVGGEMREVEIM+EEEV+KPE+D+HS SSSKKGSSSGSKKSGKL K+QSA + SISS
Sbjct: 121 LRHLVGGEMREVEIMQEEEVDKPENDTHSNSSSKKGSSSGSKKSGKLNKNQSASSNSISS 180

Query: 152 GHSKKVSHSGMDSEVSSKTNSKGKSLPEKPPIDK----GVKKSNAGATPMKKRKG----- 202
             SKK SH  +DSE SSK + K KS PEKPPIDK      KK+N G    KK +      
Sbjct: 181 NTSKKDSHIILDSEASSKLSPKSKSPPEKPPIDKRNDKNFKKANGGVKSTKKWRNSPLGG 240

Query: 203 -KLHKG-QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKP 260
            KL  G +D S++GL  P LG  LLKQ+R+LISSGDNPQKALELALRA+KSFEI ANGKP
Sbjct: 241 KKLQNGVEDSSDSGLGNPDLGRFLLKQSRDLISSGDNPQKALELALRASKSFEICANGKP 300

Query: 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320
           SLELVM LHV+AAIYCS+GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM
Sbjct: 301 SLELVMSLHVVAAIYCSVGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 360

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
           LGQLENS  CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF +A++ CQMALDIH
Sbjct: 361 LGQLENSTKCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFDDAKRLCQMALDIH 420

Query: 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440
           ++NG+PAS EEAADRRLMGLICETKGDHEAALEHLVLASM M+AN Q+AEVASVDCSIGD
Sbjct: 421 RENGAPASPEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEAEVASVDCSIGD 480

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500
           TYLSLSRYDEA FAYQKALTAFKT KGENHPAVA+VFVRLAD+YN+TGKLR+SKSYCENA
Sbjct: 481 TYLSLSRYDEAVFAYQKALTAFKTTKGENHPAVAAVFVRLADLYNKTGKLRDSKSYCENA 540

Query: 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560
           LRIYEKP PG+PPEEIASGLTDVS+IYESMNELEQAIKLLQKALKIYNDAPGQQST+AGI
Sbjct: 541 LRIYEKPAPGIPPEEIASGLTDVSAIYESMNELEQAIKLLQKALKIYNDAPGQQSTIAGI 600

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV 620
           EAQMGVMYYMLGNYS+SY++FKNA+SKLRA GERKSAFFG+ALNQMGLACVQRYSINEA 
Sbjct: 601 EAQMGVMYYMLGNYSESYNTFKNAVSKLRASGERKSAFFGIALNQMGLACVQRYSINEAA 660

Query: 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------------REEKLGTAN 665
           ELFEEA+SILEQECGPYHPDTLGVYSNLAGTYDA+G               REEKLGTAN
Sbjct: 661 ELFEEAKSILEQECGPYHPDTLGVYSNLAGTYDAMGRLDDAIEILELVVGMREEKLGTAN 720

Query: 666 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNNDGIEV 710
           PDVDDEK+RLAELLKEAGRVRSRK +SLE LLD+NS  ++  GI V
Sbjct: 721 PDVDDEKKRLAELLKEAGRVRSRKGRSLENLLDSNSHSIDKAGIPV 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491584|ref|XP_002279663.2| PREDICTED: uncharacterized protein LOC100255253 [Vitis vinifera]

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/744 (76%), Positives = 631/744 (84%), Gaps = 42/744 (5%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQPDGEGV------- 53
           MPG++M+ ++E+GV +ELNG+ST  KENS SNKSPKS    QSP   P   GV       
Sbjct: 1   MPGVVMEGVNEDGVANELNGSSTAFKENSASNKSPKSNLGLQSP---PRSAGVEFPMNGV 57

Query: 54  -DTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVE 112
            DTSIEQLY+NVC+MQSSDQSPSR SFGS+GEESRIDSELRHLVGGEMREVE + EEEVE
Sbjct: 58  IDTSIEQLYDNVCEMQSSDQSPSRVSFGSEGEESRIDSELRHLVGGEMREVE-IMEEEVE 116

Query: 113 KPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNS 172
           KP D+S S S SKK S S  K+ GK++KS+ + +KS+S  HSKK  +S ++SEVSSK+N 
Sbjct: 117 KPGDNSRSDSGSKKESLSAGKQFGKMDKSELS-SKSVSPVHSKK--NSQLESEVSSKSNP 173

Query: 173 KGKSLPEKPPIDK----GVKKSNAGATPMKKRKG------KLHKG-QDVSEAGLDKPGLG 221
           K +S   KPP DK     ++  NAG TP+KK++       KL  G  D SEAGLD P LG
Sbjct: 174 KSRSPQGKPPSDKRSEKNLRNPNAGVTPLKKQRNSPLGGVKLQNGTDDSSEAGLDNPNLG 233

Query: 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY 281
             LLKQAR+LISSGDNPQKALELALRA KS+E  ANGKPSLE VMCLHV AAIYC+LGQY
Sbjct: 234 RFLLKQARDLISSGDNPQKALELALRATKSYEKCANGKPSLEQVMCLHVTAAIYCNLGQY 293

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
           NEAIPVLE SIEIPVIEEGQ+HALAKFAGHMQLGDTYAM+GQLENS++CYTTGL VQKQV
Sbjct: 294 NEAIPVLEHSIEIPVIEEGQDHALAKFAGHMQLGDTYAMVGQLENSILCYTTGLGVQKQV 353

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           LG+TDPRVGETCRYLAEAHVQALQF EA+K CQMALDIH++NGSPASLEEAADRRLMGLI
Sbjct: 354 LGDTDPRVGETCRYLAEAHVQALQFDEAEKLCQMALDIHRENGSPASLEEAADRRLMGLI 413

Query: 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461
           CE KGDHEAALEHL+LASM M+AN Q+ EVASVDCSIGDTYLSLSRYDEA FAYQKALT 
Sbjct: 414 CEMKGDHEAALEHLILASMAMVANGQEIEVASVDCSIGDTYLSLSRYDEAIFAYQKALTV 473

Query: 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
           FKT KGENHP+VASVFVRLAD+YN+TGKLRESKSYCENALRIY KP+PG+PPEEIASGLT
Sbjct: 474 FKTTKGENHPSVASVFVRLADLYNKTGKLRESKSYCENALRIYGKPIPGIPPEEIASGLT 533

Query: 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581
           DVS+IYESM+ELEQA+ LLQKALKIYNDAPGQQST AGIEAQMGVMYYMLGNYSDSY+SF
Sbjct: 534 DVSAIYESMDELEQALSLLQKALKIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSDSYNSF 593

Query: 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
           KNAISKLRA GE+KSAFFG+ALNQMGLACVQRY+INEA ELFEEAR ILEQE GPYHPDT
Sbjct: 594 KNAISKLRASGEKKSAFFGIALNQMGLACVQRYAINEAAELFEEARDILEQEYGPYHPDT 653

Query: 642 LGVYSNLAGTYDAIG---------------REEKLGTANPDVDDEKRRLAELLKEAGRVR 686
           LGVYSNLAGTYDA+G               REEKLGTANPDVDDEKRRLAELLKEAG+VR
Sbjct: 654 LGVYSNLAGTYDAVGRLDDAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGKVR 713

Query: 687 SRKAQSLETLLDANSR-VNNDGIE 709
           +RKA+SLETLLD NS+ VNND I+
Sbjct: 714 NRKARSLETLLDVNSQTVNNDDIK 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477406|ref|XP_004155014.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208453 [Cucumis sativus]

 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/741 (72%), Positives = 603/741 (81%), Gaps = 36/741 (4%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSP----RDQPDGEGVDTS 56
           MPGI+MD+I+EE  V++ NG+S  ++E S  NKSP+S    QSP     D P    VDTS
Sbjct: 1   MPGIVMDEINEERAVNKHNGSSIHIEE-SYENKSPRSGLSLQSPGSVHVDFPVDGLVDTS 59

Query: 57  IEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPED 116
           IE+LYENVCDMQSSDQSPSR SFGSDGEESRIDSEL HLVGGEMREVEI++EEE +  E 
Sbjct: 60  IEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEE-DIAEK 118

Query: 117 DSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKS 176
             H         S  + K  K E SQ   +K  S    +K  H  +D E S K++ +GK 
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSG---RKSPHLQLDHETSPKSSPRGKG 175

Query: 177 LPEKPPI----DKGVKKSNAGATPMKKRK------GKLHKG-QDVSEAGLDKPGLGPLLL 225
           L +KPPI    +K  KK + GA  +KK+K       K+  G +D  E+ LD P LGP LL
Sbjct: 176 LMDKPPISRKNEKNSKKXSPGAAQLKKQKDSPLRGSKMQNGSEDFEESMLDNPDLGPFLL 235

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQAR L+SSG+N QKAL +ALRAAK+FE+ ANGKP+LELVMCLHV AAIYCSLGQY+EAI
Sbjct: 236 KQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAI 295

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P+LE SIEIP IEEG EHALAKFAGHMQLGDTYAMLGQLENSL+CYTTGLEVQKQVLGET
Sbjct: 296 PLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGET 355

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           DPRVGET RYLAEAHVQAL+F EA+KFCQMALDIHK N  PASLEEA DRRLMGLICETK
Sbjct: 356 DPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETK 415

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GDHEAALEHLVLASM M+AN Q+ +VA+VDCSIGD+YLSLSRYDEA FAYQKALT FKT 
Sbjct: 416 GDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTT 475

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHPAV SVFVRLAD+YN+TGK+RES SYCENALRIYEKPVPG+PPEEIASGLTD+++
Sbjct: 476 KGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAA 535

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IYESMNE+EQA+KLL KALKIYNDAPGQQ+T+AGIEAQMGV+YYMLGNYS+SY+SF NAI
Sbjct: 536 IYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAI 595

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            KLR  GE+KSAFFG+ALNQMGL CVQ+Y+INEAVELFEEA+SILEQE GPYHPDTLGVY
Sbjct: 596 PKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVY 655

Query: 646 SNLAGTYDAIG---------------REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 690
           SNLAGTYDAIG               REEKLGTANPDVDDEKRRL+ELLKEAGRVRSRKA
Sbjct: 656 SNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKA 715

Query: 691 QSLETLLDANSR-VNNDGIEV 710
           +SLETLLDAN+  VN+ GI+V
Sbjct: 716 RSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440678|ref|XP_004138111.1| PREDICTED: uncharacterized protein LOC101208453 [Cucumis sativus]

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/741 (72%), Positives = 603/741 (81%), Gaps = 36/741 (4%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSP----RDQPDGEGVDTS 56
           MPGI+MD+I+EE  V++ NG+S  ++E S  NKSP+S    QSP     D P    VDTS
Sbjct: 1   MPGIVMDEINEERAVNKHNGSSIHIEE-SYGNKSPRSGLSLQSPGSVHVDFPVDGLVDTS 59

Query: 57  IEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPED 116
           IE+LYENVCDMQSSDQSPSR SFGSDGEESRIDSEL HLVGGEMREVEI++EEE +  E 
Sbjct: 60  IEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEE-DIAEK 118

Query: 117 DSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGKS 176
             H         S  + K  K E SQ   +K  S    +K  H  ++ E S K++ +GK 
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSG---RKSPHLQLEHETSPKSSPRGKG 175

Query: 177 LPEKPPI----DKGVKKSNAGATPMKKRK------GKLHKG-QDVSEAGLDKPGLGPLLL 225
           L +KPPI    +K  KK++ GA  +KK+K       K+  G +D  E  LD P LGP LL
Sbjct: 176 LMDKPPISRKNEKNSKKNSPGAAQLKKQKDSPLRGSKMQNGSEDFEELMLDNPDLGPFLL 235

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQAR L+SSG+N QKAL +ALRAAK+FE+ ANGKP+LELVMCLHV AAIYCSLGQY+EAI
Sbjct: 236 KQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAI 295

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P+LE SIEIP IEEG EHALAKFAGHMQLGDTYAMLGQLENSL+CYTTGLEVQKQVLGET
Sbjct: 296 PLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGET 355

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           DPRVGET RYLAEAHVQAL+F EA+KFCQMALDIHK N  PASLEEA DRRLMGLICETK
Sbjct: 356 DPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETK 415

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GDHEAALEHLVLASM M+AN Q+ +VA+VDCSIGD+YLSLSRYDEA FAYQKALT FKT 
Sbjct: 416 GDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTT 475

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHPAV SVFVRLAD+YN+TGK+RES SYCENALRIYEKPVPG+PPEEIASGLTD+++
Sbjct: 476 KGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAA 535

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           IYESMNE+EQA+KLL KALKIYNDAPGQQ+T+AGIEAQMGV+YYMLGNYS+SY+SF NAI
Sbjct: 536 IYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAI 595

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
            KLR  GE+KSAFFG+ALNQMGL CVQ+Y+INEAVELFEEA+SILEQE GPYHPDTLGVY
Sbjct: 596 PKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVY 655

Query: 646 SNLAGTYDAIG---------------REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 690
           SNLAGTYDAIG               REEKLGTANPDVDDEKRRL+ELLKEAGRVRSRKA
Sbjct: 656 SNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKA 715

Query: 691 QSLETLLDANSR-VNNDGIEV 710
           +SLETLLDAN+  VN+ GI+V
Sbjct: 716 RSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507244|ref|XP_003522379.1| PREDICTED: uncharacterized protein LOC100791625 [Glycine max]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/748 (69%), Positives = 599/748 (80%), Gaps = 45/748 (6%)

Query: 1   MPGIIMDDIHEEGVVSELNGNS-TPVKENSVSNKSPKSTPCPQSP-RDQPD------GEG 52
           MPGI+ + + +EG  +E+NG+  +P KE     KSP+      SP R Q D      G+G
Sbjct: 12  MPGIVTNGVQDEGGSNEMNGDQDSPFKEPLNLVKSPRGGSV--SPGRGQGDDGANFGGDG 69

Query: 53  V-DTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEE-- 109
           V + SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSELRHLVGG MREVEIMEEE  
Sbjct: 70  VVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVG 129

Query: 110 EVEKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSS- 168
           E ++PE  S S  SS  G  S  KK  ++++ Q     + SSG ++K S   ++S+V S 
Sbjct: 130 EGKEPEGSSSSEISSALGGLSHDKKLDQVDEIQEVQPAATSSGSTEK-SVKALNSQVESD 188

Query: 169 ----KTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK----GK---LHKGQDVSEA 213
               K  SKG+S   K PI     K ++K   G T +K  K    GK    ++ + ++E+
Sbjct: 189 NTLPKLTSKGRSPLSKAPIPRKNGKPLRKPIGGVTGVKNTKNSPIGKSVSQNRVESMAES 248

Query: 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273
            L+KP   P+LLKQAR+LISSGDNPQKAL+LAL+A + FE   NGKPSLELVMCLHV AA
Sbjct: 249 ALEKPERAPVLLKQARDLISSGDNPQKALDLALQAMELFEKFGNGKPSLELVMCLHVTAA 308

Query: 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333
           IYCSLGQY EAIP+LE+SIEIPVI E Q+HALAKFAGHMQLGDTYAMLGQLENS+MCYTT
Sbjct: 309 IYCSLGQYAEAIPILERSIEIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTT 368

Query: 334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA 393
           GLEVQKQ+LGETDPRVGETCRY+AEA+VQALQF EA++ CQMALDIHK N S  S+EEAA
Sbjct: 369 GLEVQKQILGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANNSAPSVEEAA 428

Query: 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF 453
           DRRLMGLICETKG+HE ALEHLVLASM M+ N Q+AEVASVDCSIGDTYLSLSRYDEA F
Sbjct: 429 DRRLMGLICETKGNHETALEHLVLASMAMVNNGQEAEVASVDCSIGDTYLSLSRYDEAAF 488

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
           AYQKALT FKT+KGENHPAV  VFVRLAD+YNRTGK+RESKSYCENAL+IYE P+PGVP 
Sbjct: 489 AYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCENALKIYENPMPGVPL 548

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           EEIASGLT++S+IYESMNELEQA+KLLQKAL+IY+D PGQQST+AGIEAQMGVMYYMLGN
Sbjct: 549 EEIASGLTNISTIYESMNELEQALKLLQKALEIYSDTPGQQSTIAGIEAQMGVMYYMLGN 608

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
           YS+SY++ K+AISKLRAIGE+KS+FFG+ALNQMGLACVQRY+++EA ELFEEA+SILEQE
Sbjct: 609 YSESYNTLKDAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQE 668

Query: 634 CGPYHPDTLGVYSNLAGTYDAIG---------------REEKLGTANPDVDDEKRRLAEL 678
            GPYHP+TLGVYSNLAGTYDAIG               REEKLGTANP+VDDEKRRL EL
Sbjct: 669 YGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRRLGEL 728

Query: 679 LKEAGRVRSRKAQSLETLLDANSRVNND 706
           LKEAGRVRSRKA+SLE LLD N+   N+
Sbjct: 729 LKEAGRVRSRKARSLENLLDGNAHAANN 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518977|ref|XP_003528151.1| PREDICTED: uncharacterized protein LOC100783201 [Glycine max]

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/754 (68%), Positives = 590/754 (78%), Gaps = 50/754 (6%)

Query: 1   MPGIIMDDIH-EEGVVSELNGN-STPVKENSVSNKSPKS-TPCPQSPRDQPDG------- 50
           MPGI+ + +H +EG  ++LNG+  +  KE     KSP+  +  PQ  R Q D        
Sbjct: 1   MPGIVRNGVHHDEGGSNDLNGDHDSTSKEPLNLVKSPRGGSVSPQ--RGQGDDGANFGGD 58

Query: 51  EGVDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEE 110
           E V+ SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSELRHLVGG MREVEIMEEE 
Sbjct: 59  EVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEV 118

Query: 111 VEK---PEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKK-----VSHSGM 162
            E+   PE  S S  SS  G  S  KK  ++++ Q     + SSG S+K     +S  G 
Sbjct: 119 GEEKGLPEGSSSSEISSALGGLSNDKKLNQVDEIQEVQPAATSSGSSEKSIKASISMVGP 178

Query: 163 DSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGAT---------PMKKRKGKLHKGQD 209
           D+  S K+ SKGK    K PI     K ++K  +GAT         PM K   + ++ + 
Sbjct: 179 DN-TSPKSTSKGKIPLSKAPIPRNNGKPLRKQISGATTGVKTTKNSPMGKSVSR-NRAES 236

Query: 210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269
            +E+ L+KP   P+LLKQAR+LISSGDNP KAL+LAL+A K FE   N KPSLELVMCLH
Sbjct: 237 TAESALEKPERAPVLLKQARDLISSGDNPHKALDLALQAMKLFEKFGNEKPSLELVMCLH 296

Query: 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           V AAIYCSLGQY EAIP+LE+SIE+PVI E Q+HALAKFAGHMQLGDTYAMLGQLENS M
Sbjct: 297 VTAAIYCSLGQYGEAIPILERSIEVPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSTM 356

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
           CYTTGLEVQKQ+LGETDPRVGETCRY+AEA+VQALQF EA++ CQMALDIH  N S  SL
Sbjct: 357 CYTTGLEVQKQILGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHIANNSAPSL 416

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           EEAADRRLMGLICETKG+HE ALEHLVLASM M++NDQ+AEVASVDCSIGDTYLSLSRYD
Sbjct: 417 EEAADRRLMGLICETKGNHETALEHLVLASMAMVSNDQEAEVASVDCSIGDTYLSLSRYD 476

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           EA FAYQKALT FKT+KGENHPAV  VFVRLAD+YNRTGK+RESKSYCE+AL+IYE P+P
Sbjct: 477 EAVFAYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCESALKIYENPMP 536

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
           G+PPEEIASGLT++S+IYESMNELE A+KLLQKAL+IYND PGQQST+AGIEAQMGVMYY
Sbjct: 537 GIPPEEIASGLTNISTIYESMNELEHALKLLQKALEIYNDTPGQQSTIAGIEAQMGVMYY 596

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           MLGNYS SY++ KNAISKLRAIGE+KS+FFG+ALNQMGLACVQ Y+++EA ELFEEA+SI
Sbjct: 597 MLGNYSKSYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQCYALSEATELFEEAKSI 656

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIG---------------REEKLGTANPDVDDEKRR 674
           LEQE GPYHP+TLGV SNLA TYDAIG               REEKLGTANP+VDDEKRR
Sbjct: 657 LEQEYGPYHPETLGVSSNLAATYDAIGRLDDAIQILEYVVNTREEKLGTANPEVDDEKRR 716

Query: 675 LAELLKEAGRVRSRKAQSLETLLDANSRVNNDGI 708
           L ELLKEAGRVRSRK +SLE LLD N+   N+ +
Sbjct: 717 LGELLKEAGRVRSRKTRSLENLLDGNAHAANNVV 750

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461993|ref|XP_003601278.1| Kinesin light chain [Medicago truncatula] gi|355490326|gb|AES71529.1| Kinesin light chain [Medicago truncatula]

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/764 (65%), Positives = 594/764 (77%), Gaps = 60/764 (7%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQ-----SPRDQPDGEGVDT 55
           MPGI+ + +H++G V+E+NGN +P K +    KSP+S+  PQ      P  Q DG  V+ 
Sbjct: 1   MPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGV-VEP 59

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEV---- 111
           SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSEL HLVGG MRE+EIMEEE      
Sbjct: 60  SIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVG 119

Query: 112 EKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKS----ISSGHSKKVS--------- 158
            +P + S   +SS  G+ S  KK   + + QS G+KS    I SG    V          
Sbjct: 120 RRPGESSSGETSSGMGNLSDDKKMDMVAEIQS-GSKSPVIEIQSGSKSPVVKTRSSSKSP 178

Query: 159 ----------HSGMDSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK--- 201
                     +S + S+ S ++  KGKS P K P+    D+ ++K   G   +K  K   
Sbjct: 179 VSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSP 238

Query: 202 -GK---LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257
            GK   + + ++ +E+ LDKP   P+LLKQAR+L+S+GDNP KALELAL+A K FE   N
Sbjct: 239 LGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGN 298

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
           GKPSLELVMCLHV AAIYCSLG+Y+EAIP+LE+SIEIP I E Q+HALAKFAGHMQLGDT
Sbjct: 299 GKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDT 358

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
           YAMLGQLENS+M YT G EVQ+ +LGETDPRVGETCRYLAEA+VQALQF+EA++ CQMAL
Sbjct: 359 YAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMAL 418

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
           DIH++N S  S+EEAADRRLMGLICETKG+HEAALEHLVLASM M+AN Q+AEVASVDCS
Sbjct: 419 DIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCS 478

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           IGDTYLSLSRYDEA FAY+KAL  FKT+KGENHPAV SVFVRLAD+YNRTGK+RESKSYC
Sbjct: 479 IGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYC 538

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
           + AL+IYE P+PGV PEEIASGLT++SSIYESMNE++QA+KLLQKAL+IYNDAPGQQ T+
Sbjct: 539 DKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTI 598

Query: 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           AGIEAQ+GVMYYMLGNY++SY++ K AI+KLRAIGE+KS+FFG+ALNQ+GLACVQRY++ 
Sbjct: 599 AGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALR 658

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------------REEKLG 662
           EA+ELFEEA+S+LE E GPYHP+TLGVYSNLAGTYDAIG               REEKLG
Sbjct: 659 EAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLG 718

Query: 663 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 706
           TANPDVDDEKRRL+ELLKEAG+VRSRK +SLE L D ++   N+
Sbjct: 719 TANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNN 762

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461995|ref|XP_003601279.1| Kinesin light chain [Medicago truncatula] gi|355490327|gb|AES71530.1| Kinesin light chain [Medicago truncatula]

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/764 (65%), Positives = 594/764 (77%), Gaps = 60/764 (7%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQ-----SPRDQPDGEGVDT 55
           MPGI+ + +H++G V+E+NGN +P K +    KSP+S+  PQ      P  Q DG  V+ 
Sbjct: 29  MPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGV-VEP 87

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEV---- 111
           SIEQLYENVCDMQSSDQSPSR SFGSDG+ESRIDSEL HLVGG MRE+EIMEEE      
Sbjct: 88  SIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVG 147

Query: 112 EKPEDDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKS----ISSGHSKKVS--------- 158
            +P + S   +SS  G+ S  KK   + + QS G+KS    I SG    V          
Sbjct: 148 RRPGESSSGETSSGMGNLSDDKKMDMVAEIQS-GSKSPVIEIQSGSKSPVVKTRSSSKSP 206

Query: 159 ----------HSGMDSEVSSKTNSKGKSLPEKPPI----DKGVKKSNAGATPMKKRK--- 201
                     +S + S+ S ++  KGKS P K P+    D+ ++K   G   +K  K   
Sbjct: 207 VSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSP 266

Query: 202 -GK---LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257
            GK   + + ++ +E+ LDKP   P+LLKQAR+L+S+GDNP KALELAL+A K FE   N
Sbjct: 267 LGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGN 326

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
           GKPSLELVMCLHV AAIYCSLG+Y+EAIP+LE+SIEIP I E Q+HALAKFAGHMQLGDT
Sbjct: 327 GKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDT 386

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
           YAMLGQLENS+M YT G EVQ+ +LGETDPRVGETCRYLAEA+VQALQF+EA++ CQMAL
Sbjct: 387 YAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMAL 446

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
           DIH++N S  S+EEAADRRLMGLICETKG+HEAALEHLVLASM M+AN Q+AEVASVDCS
Sbjct: 447 DIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCS 506

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           IGDTYLSLSRYDEA FAY+KAL  FKT+KGENHPAV SVFVRLAD+YNRTGK+RESKSYC
Sbjct: 507 IGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYC 566

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
           + AL+IYE P+PGV PEEIASGLT++SSIYESMNE++QA+KLLQKAL+IYNDAPGQQ T+
Sbjct: 567 DKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTI 626

Query: 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           AGIEAQ+GVMYYMLGNY++SY++ K AI+KLRAIGE+KS+FFG+ALNQ+GLACVQRY++ 
Sbjct: 627 AGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALR 686

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------------REEKLG 662
           EA+ELFEEA+S+LE E GPYHP+TLGVYSNLAGTYDAIG               REEKLG
Sbjct: 687 EAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLG 746

Query: 663 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNND 706
           TANPDVDDEKRRL+ELLKEAG+VRSRK +SLE L D ++   N+
Sbjct: 747 TANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNN 790

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133522|ref|XP_002321593.1| predicted protein [Populus trichocarpa] gi|222868589|gb|EEF05720.1| predicted protein [Populus trichocarpa]

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/664 (75%), Positives = 548/664 (82%), Gaps = 59/664 (8%)

Query: 53  VDTSIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVE 112
           VDTSIEQLYENVCDMQSSDQSPSRHSF SDGEESRIDSEL HLVGGEMREVEIMEEEEV+
Sbjct: 4   VDTSIEQLYENVCDMQSSDQSPSRHSFASDGEESRIDSELCHLVGGEMREVEIMEEEEVD 63

Query: 113 KPEDDSHSISSSKKGSSSG-SKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTN 171
           KPE D+ S SSSKKG      K++ K  K  + G + +                      
Sbjct: 64  KPEHDTRSNSSSKKGKKPPIDKRNDKNLKKGNVGNRLM---------------------- 101

Query: 172 SKGKSLPEKPPIDKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQAREL 231
              K   + PP   GVK  N                    E+GLD P LG  LLKQAR+L
Sbjct: 102 ---KKRRDSPP--GGVKLLNGTK----------------DESGLDNPDLGRFLLKQARDL 140

Query: 232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS 291
           +SSGDNPQKALELALRA+KSFEI ANGK SLELVMCLHV AAI+CS+GQY EAIP+LE S
Sbjct: 141 VSSGDNPQKALELALRASKSFEICANGKSSLELVMCLHVTAAIHCSIGQYREAIPILEHS 200

Query: 292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351
           IEIPV EEGQEHALAKFAG+MQLGDTYAMLGQ+ENS  CY+TGLEVQK+VLGETDPRVGE
Sbjct: 201 IEIPVPEEGQEHALAKFAGYMQLGDTYAMLGQVENSTNCYSTGLEVQKKVLGETDPRVGE 260

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
           TCRYLAEAHVQALQF +AQ  CQMALDIH++NGSPASLEEAADRRLMGLICETKGDHEAA
Sbjct: 261 TCRYLAEAHVQALQFDDAQMVCQMALDIHRENGSPASLEEAADRRLMGLICETKGDHEAA 320

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
           LEHLVLASM M+AN Q++EVAS+DC IGD YLSLSRYDEA FAYQKALTAFKT KGENHP
Sbjct: 321 LEHLVLASMAMVANGQESEVASIDCGIGDAYLSLSRYDEAVFAYQKALTAFKTTKGENHP 380

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
           +VASVFVRLAD+YN+TGK+R+SKSYCENALRIYEKPVPG+PPEEIASGL+DVS+IYESMN
Sbjct: 381 SVASVFVRLADLYNKTGKMRDSKSYCENALRIYEKPVPGIPPEEIASGLSDVSAIYESMN 440

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           EL+QAIKLL KALKIYNDAPGQQST+AGIEAQMGVMYYM+GNYS+SY+SFKNAISKLRA 
Sbjct: 441 ELDQAIKLLGKALKIYNDAPGQQSTIAGIEAQMGVMYYMMGNYSESYNSFKNAISKLRAS 500

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
           GE+KSAFFG+ALNQMGL+CVQRY+INEA ELFEEA+ ILEQECGPYHPDTLGVYSNLAGT
Sbjct: 501 GEKKSAFFGIALNQMGLSCVQRYAINEAAELFEEAKIILEQECGPYHPDTLGVYSNLAGT 560

Query: 652 YDAIG---------------REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 696
           YDA+G               REEKLGTANPDV DEK+RLAELLKEAGRVRSRKA+SLE L
Sbjct: 561 YDAMGRLDDAIEILEYVVEMREEKLGTANPDVVDEKKRLAELLKEAGRVRSRKARSLENL 620

Query: 697 LDAN 700
           LD N
Sbjct: 621 LDGN 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488843|ref|XP_002274441.2| PREDICTED: uncharacterized protein LOC100254332 [Vitis vinifera]

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/741 (66%), Positives = 566/741 (76%), Gaps = 63/741 (8%)

Query: 1   MPGIIMDDIHEEGVVSELNGNSTPVKENSVSNKSPKSTPCPQSPRDQP-----DGEGVDT 55
           MPG++MD +H +G+      N TP  +   SN SP S   PQS          DG  ++T
Sbjct: 1   MPGLVMDGLHRDGM-----ANYTP--KEGFSN-SPVSALSPQSHESGSIDLVIDGV-INT 51

Query: 56  SIEQLYENVCDMQSSDQSPSRHSFGSDGEESRIDSELRHLVGGEMREVEIMEEEEVEKPE 115
           SIEQLY NVC+MQSSDQSPSR SF S G ESRIDSEL HLVGG   + E+M+E  + K  
Sbjct: 52  SIEQLYHNVCEMQSSDQSPSRRSFISYGNESRIDSELYHLVGGLFGDAEVMKEVVMMK-- 109

Query: 116 DDSHSISSSKKGSSSGSKKSGKLEKSQSAGTKSISSGHSKKVSHSGMDSEVSSKTNSKGK 175
                        + G    G L  +Q A  KS+ S   K+ SH  ++SE S K+N    
Sbjct: 110 -------------NKGEDNEGNL--TQFASEKSVPSLQWKRPSHLHLESEGSPKSNPN-- 152

Query: 176 SLPEKPPIDK----GVKKSNAGATPMKKRKG-----KLHKG-QDVSEAGLDKPGLGPLLL 225
              E+PPIDK     ++K N G  P++K+K      K H G +D+ EAGLD P LGP LL
Sbjct: 153 ---ERPPIDKRRERNLRKPN-GVIPIRKQKNFASGVKFHNGTEDLLEAGLDNPDLGPFLL 208

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           KQ R+LISSG+NPQKALELALRA KSFEI  NGKP+LELVMCLHVIAAIYCSLGQY+EAI
Sbjct: 209 KQTRDLISSGENPQKALELALRAVKSFEITGNGKPNLELVMCLHVIAAIYCSLGQYDEAI 268

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           P LE+SIEIPVIEEGQ HALAKF G MQLGDTYAM+GQ+ENS++CYT GLE+Q+QVLGE 
Sbjct: 269 PSLERSIEIPVIEEGQNHALAKFVGCMQLGDTYAMIGQIENSILCYTAGLEIQRQVLGEM 328

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
           D R GETCRYLAEAHVQALQF EA+K CQMAL+IHK NG+PASLEEAADRRLM LIC++K
Sbjct: 329 DSRFGETCRYLAEAHVQALQFDEAKKLCQMALNIHKKNGTPASLEEAADRRLMALICDSK 388

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GD+EAALEH VLA M M AN Q+ + AS+DCSIGDTYLSL+RYDEA F+YQKALT FK+ 
Sbjct: 389 GDYEAALEHYVLAGMAMAANGQEIDAASIDCSIGDTYLSLARYDEAVFSYQKALTVFKST 448

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
           KGENHP VASVFVRLAD+YN+ GKLRESKSYCENALR+Y KP PG+P EEIASGL D+S+
Sbjct: 449 KGENHPTVASVFVRLADLYNKVGKLRESKSYCENALRLYGKPNPGIPSEEIASGLIDISA 508

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           I+ESMNELEQA+KLLQKALKIY +APGQQST+AGIEAQMGV+YYM+GNYS SY+SF  AI
Sbjct: 509 IFESMNELEQALKLLQKALKIYGNAPGQQSTIAGIEAQMGVIYYMMGNYSASYNSFSCAI 568

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645
           SKLRA GE+KSAF G+ALNQMGLACVQRY+I EA ELFEEARSILE+E GP HPDTLG+Y
Sbjct: 569 SKLRASGEKKSAFLGIALNQMGLACVQRYAIGEAAELFEEARSILEKEYGPCHPDTLGIY 628

Query: 646 SNLAGTYDAIG---------------REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 690
           SNLAGTYDA+G               REEKLGTANPDVDDEKRRL ELL EAGRVRSRK 
Sbjct: 629 SNLAGTYDAMGRLEDAIEILEYVVGVREEKLGTANPDVDDEKRRLTELLTEAGRVRSRKT 688

Query: 691 QSLETLLDANSRVN-NDGIEV 710
           +SL+T LD N +   ND I+V
Sbjct: 689 RSLQTFLDTNPQTTINDAIKV 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	712
TAIR|locus:2015959	650	KLCR3 "AT1G27500" [Arabidopsis	0.75	0.821	0.663	8.2e-201
TAIR|locus:2086834	663	KLCR2 "kinesin light chain-rel	0.758	0.814	0.618	1.4e-196
TAIR|locus:2123411	609	KLCR1 "kinesin light chain-rel	0.665	0.778	0.636	1.9e-168
TAIR|locus:2042506	617	AT2G31240 "AT2G31240" [Arabido	0.641	0.740	0.268	7.5e-37
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.573	0.316	0.220	2.1e-18
ASPGD|ASPL0000061567	1185	AN1071 [Emericella nidulans (t	0.609	0.366	0.221	4.8e-12
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.200	0.11	0.282	5.9e-12
UNIPROTKB|Q21592	516	klc-1 "Protein KLC-1, isoform	0.345	0.476	0.244	7.5e-12
WB|WBGene00002214	536	klc-1 [Caenorhabditis elegans	0.345	0.458	0.244	8.1e-12
WB|WBGene00002215	540	klc-2 [Caenorhabditis elegans	0.366	0.483	0.25	1.4e-11

TAIR|locus:2015959 KLCR3 "AT1G27500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1810 (642.2 bits), Expect = 8.2e-201, Sum P(2) = 8.2e-201
 Identities = 372/561 (66%), Positives = 437/561 (77%)

Query:   165 EVSSKTNSKGKSL---P---EKPPIDKGVKKSNAGATPMKKRK-G--KLHKGQDVSEAXX 215
             E   K+NS    L   P   EK    K V KSN G   M+K+K G  KL  G +  E   
Sbjct:    84 EFDVKSNSSNLDLEVMPRDMEKQTGKKNVTKSNVGVGGMRKKKVGGTKLQNGNE--EPSS 141

Query:   216 XXXXXXXXXXXQARELISSGDNPQKALELALRAAKSFEIGA-NGKPSLELVMCLHVIAAI 274
                        QAR L+SSGD+  KALEL  RAAK FE  A NGKP LE +MCLHV AA+
Sbjct:   142 ENVELARFLLNQARNLVSSGDSTHKALELTHRAAKLFEASAENGKPCLEWIMCLHVTAAV 201

Query:   275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334
             +C L +YNEAIPVL++S+EIPV+EEG+EHALAKFAG MQLGDTYAM+GQLE+S+ CYT G
Sbjct:   202 HCKLKEYNEAIPVLQRSVEIPVVEEGEEHALAKFAGLMQLGDTYAMVGQLESSISCYTEG 261

Query:   335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394
             L +QK+VLGE DPRVGETCRYLAEA VQAL+F EAQ+ C+ AL IH+++G P S+ EAAD
Sbjct:   262 LNIQKKVLGENDPRVGETCRYLAEALVQALRFDEAQQVCETALSIHRESGLPGSIAEAAD 321

Query:   395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             RRLMGLICETKGDHE ALEHLVLASM M AN Q++EVA VD SIGD+YLSLSR+DEA  A
Sbjct:   322 RRLMGLICETKGDHENALEHLVLASMAMAANGQESEVAFVDTSIGDSYLSLSRFDEAICA 381

Query:   455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
             YQK+LTA KT KGENHPAV SV++RLAD+YNRTGK+RE+KSYCENALRIYE     + PE
Sbjct:   382 YQKSLTALKTAKGENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRIYESHNLEISPE 441

Query:   515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
             EIASGLTD+S I ESMNE+EQAI LLQKALKIY D+PGQ+  +AGIEAQMGV+YYM+G Y
Sbjct:   442 EIASGLTDISVICESMNEVEQAITLLQKALKIYADSPGQKIMIAGIEAQMGVLYYMMGKY 501

Query:   575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
              +SY++FK+AISKLRA G+++S FFG+ALNQMGLAC+Q  +I EAVELFEEA+ ILEQEC
Sbjct:   502 MESYNTFKSAISKLRATGKKQSTFFGIALNQMGLACIQLDAIEEAVELFEEAKCILEQEC 561

Query:   635 GPYHPDTLGVYSNLAGTYDAIGR---------------EEKLGTANPDVDDEKRRLAELL 679
             GPYHP+TLG+YSNLAG YDAIGR               EEKLGTANP  +DEKRRLA+LL
Sbjct:   562 GPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANPVTEDEKRRLAQLL 621

Query:   680 KEAGRVRSRKAQSLETLLDAN 700
             KEAG V  RKA+SL+TL+D++
Sbjct:   622 KEAGNVTGRKAKSLKTLIDSD 642

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2086834 KLCR2 "kinesin light chain-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1750 (621.1 bits), Expect = 1.4e-196, Sum P(2) = 1.4e-196
 Identities = 349/564 (61%), Positives = 435/564 (77%)

Query:   165 EVSSKTNSKGKSLPEKPPIDKGVK--KSNAGATPMKKRKGKLHKGQDVSEAXXXXXX--X 220
             E   ++N +G SL +K P+  G K  K++     M   +    K  D+ +          
Sbjct:    95 EKKEESNGEG-SLSQKKPLSNGKKVAKTSPNNPKMPGSRISSRKSPDLGKVSVDEESPEL 153

Query:   221 XXXXXXQARELISSGDNPQKALELALRAAKSFEIGANGKPSL--ELVMCLHVIAAIYCSL 278
                   QAREL+SSG+N  KAL+LALRA K FE    G+  L   LVM LH++AAIY  L
Sbjct:   154 GVVLLKQARELVSSGENLNKALDLALRAVKVFEKCGEGEKQLGLNLVMSLHILAAIYAGL 213

Query:   279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
             G+YN+A+PVLE+SIEIP+IE+G++HALAKFAG MQLGD Y ++GQ+ENS+M YT GLE+Q
Sbjct:   214 GRYNDAVPVLERSIEIPMIEDGEDHALAKFAGCMQLGDMYGLMGQVENSIMLYTAGLEIQ 273

Query:   339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA--SLEEAADRR 396
             +QVLGE+D RVGETCRYLAEAHVQA+QF EA + CQMALDIHK+NG+ A  S+EEAADR+
Sbjct:   274 RQVLGESDARVGETCRYLAEAHVQAMQFEEASRLCQMALDIHKENGAAATASIEEAADRK 333

Query:   397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
             LMGLIC+ KGD+E ALEH VLASM M + +   +VA+VDCSIGD Y+SL+R+DEA FAYQ
Sbjct:   334 LMGLICDAKGDYEVALEHYVLASMAMSSQNHREDVAAVDCSIGDAYMSLARFDEAIFAYQ 393

Query:   457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             KAL  FK  KGE H +VA V+VRLAD+YN+ GK R+SKSYCENAL+IY KP PG P EE+
Sbjct:   394 KALAVFKQGKGETHSSVALVYVRLADLYNKIGKTRDSKSYCENALKIYLKPTPGTPMEEV 453

Query:   517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
             A+G  ++S+IY+SMNEL+QA+KLL++ALKIY +APGQQ+T+AGIEAQMGV+ YM+GNYS+
Sbjct:   454 ATGFIEISAIYQSMNELDQALKLLRRALKIYANAPGQQNTIAGIEAQMGVVTYMMGNYSE 513

Query:   577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
             SYD FK+AISK R  GE+K+A FG+ALNQMGLACVQRY+INEA +LFEEA++ILE+ECGP
Sbjct:   514 SYDIFKSAISKFRNSGEKKTALFGIALNQMGLACVQRYAINEAADLFEEAKTILEKECGP 573

Query:   637 YHPDTLGVYSNLAGTYDAIGR---------------EEKLGTANPDVDDEKRRLAELLKE 681
             YHPDTL VYSNLAGTYDA+GR               EEKLGTANP+V+DEK+RLA LLKE
Sbjct:   574 YHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTREEKLGTANPEVEDEKQRLAALLKE 633

Query:   682 AGRVRSRKAQSLETLLDANSRVNN 705
             AGR RS++ ++L TLLD N  + N
Sbjct:   634 AGRGRSKRNRALLTLLDNNPEIAN 657

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2123411 KLCR1 "kinesin light chain-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1618 (574.6 bits), Expect = 1.9e-168, Sum P(2) = 1.9e-168
 Identities = 319/501 (63%), Positives = 401/501 (80%)

Query:   228 ARELISSGDNPQKALELALRAAKSFEI-----------GANGKPSLELVMCLHVIAAIYC 276
             AR+ I+SG+ P KAL+ A+RA KSFE            G++G P L+L M LHV+AAIYC
Sbjct:    92 ARDAIASGEGPNKALDYAIRATKSFERCCAAVAPPIPGGSDGGPVLDLAMSLHVLAAIYC 151

Query:   277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
             SLG+++EA+P LE++I++P    G +H+LA F+GHMQLGDT +MLGQ++ S+ CY  GL+
Sbjct:   152 SLGRFDEAVPPLERAIQVPDPTRGPDHSLAAFSGHMQLGDTLSMLGQIDRSIACYEEGLK 211

Query:   337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
             +Q Q LG+TDPRVGETCRYLAEA+VQA+QF++A++ C+  L+IH+ +  PASLEEAADRR
Sbjct:   212 IQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADRR 271

Query:   397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
             LM +ICE KGD+E ALEHLVLASM MIA+ Q++EVAS+D SIG+ Y+SL R+DEA F+YQ
Sbjct:   272 LMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDVSIGNIYMSLCRFDEAVFSYQ 331

Query:   457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
             KALT FK +KGE HP VASVFVRLA++Y+RTGKLRESKSYCENALRIY KPVPG   EEI
Sbjct:   332 KALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPVPGTTVEEI 391

Query:   517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
             A GLT++S+IYES++E E+A+KLLQK++K+  D PGQQS +AG+EA+MGVMYY +G Y D
Sbjct:   392 AGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGVMYYTVGRYED 451

Query:   577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
             + ++F++A++KLRA GE KSAFFGV LNQMGLACVQ + I+EA ELFEEAR ILEQE GP
Sbjct:   452 ARNAFESAVTKLRAAGE-KSAFFGVVLNQMGLACVQLFKIDEAGELFEEARGILEQERGP 510

Query:   637 YHPDTLGVYSNLAGTYDAIGR---------------EEKLGTANPDVDDEKRRLAELLKE 681
                DTLGVYSNLA TYDA+GR               EEKLGTANPD +DEK+RLAELLKE
Sbjct:   511 CDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDEKKRLAELLKE 570

Query:   682 AGRVRSRKAQSLETLLDANSR 702
             AGR R+ KA+SL+ L+D N+R
Sbjct:   571 AGRSRNYKAKSLQNLIDPNAR 591

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2042506 AT2G31240 "AT2G31240" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 7.5e-37, P = 7.5e-37
 Identities = 129/481 (26%), Positives = 224/481 (46%)

Query:   235 GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
             G++P+K L  A +A KSF+ G   KP+L + M   ++ +    L ++++++  L ++  I
Sbjct:   132 GEDPEKVLSYADKALKSFD-GDGNKPNLLVAMASQLMGSANYGLKRFSDSLGYLNRANRI 190

Query:   295 PVIEEGQEHALAK------FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348
              V  E     + +       A  ++L +    +G+ E ++      LE+++    E    
Sbjct:   191 LVKLEADGDCVVEDVRPVLHAVQLELANVKNAMGRREEAIENLKKSLEIKEMTFDEDSKE 250

Query:   349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408
             +G   R LA+A+V  L F+EA  +   AL+IHK      S E A DRRL+G+I      H
Sbjct:   251 MGVANRSLADAYVAVLNFNEALPYALKALEIHKKELGNNSAEVAQDRRLLGVIYSGLEQH 310

Query:   409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468
             + ALE   L+   +       E+   +    +  ++L +Y+EA     K++   +T+K  
Sbjct:   311 DKALEQNRLSQRVLKNWGMKLELIRAEIDAANMKVALGKYEEA-IDILKSVVQ-QTDKDS 368

Query:   469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528
                A+  VF+ ++       K  ESK   E A  I EK    +P E +A   ++V+  YE
Sbjct:   369 EMRAM--VFISMSKALVNQQKFAESKRCLEFACEILEKKETALPVE-VAEAYSEVAMQYE 425

Query:   529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
             SMNE E AI LLQK L I    P +Q +   + A++G +    G  S +    ++A  +L
Sbjct:   426 SMNEFETAISLLQKTLGILEKLPQEQHSEGSVSARIGWLLLFSGRVSQAVPYLESAAERL 485

Query:   589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648
             +     K    G   N +G A ++      A ++F  A+ I++   GP H D++    NL
Sbjct:   486 KESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFAVAKDIMDVSLGPNHVDSIDACQNL 545

Query:   649 AGTYDAIGR-------EEKLGTA----NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL 697
             +  Y  +G        ++++  A         DE +    LL++  R+++R   S   LL
Sbjct:   546 SKAYAGMGNYSLAVEFQQRVINAWDNHGDSAKDEMKEAKRLLEDL-RLKARGGVSTNKLL 604

Query:   698 D 698
             +
Sbjct:   605 N 605

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 94/427 (22%), Positives = 194/427 (45%)

Query:   239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298
             +K  + AL A K   +G +   +L+ V  L ++   Y   G+  EA  + ++++      
Sbjct:   815 EKMYQRAL-AGKEKALGPDHTSTLDTVNNLGIL---YSDQGKLKEAEEMYQRALAGYEKA 870

Query:   299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAE 358
              G +H       +  LG+ Y+  G+L+ +   Y   L+  ++ LG       +T   L  
Sbjct:   871 LGPDHTSTLVTVN-NLGNLYSDQGKLKEAEKMYQQALKGYEKALGPDHTSTLDTVNNLGS 929

Query:   359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHL 415
              +    +  EA++  Q AL   +    P           +G++ + +G   + E   +  
Sbjct:   930 LYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLDTVNNLGILYKNQGKLKEAEEMYQRA 989

Query:   416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             +      +  D  + + +V+ ++G  Y    +  EA   YQ+AL  ++   G +H +   
Sbjct:   990 LAGKEKALGPDHTSTLMTVN-NLGSLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLI 1048

Query:   476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT--DVSSIYESMNEL 533
                 L ++Y+  GKL+E++   + AL  YEK + G  P+  ++ +T  ++ ++Y    +L
Sbjct:  1049 TVNNLGNLYSDQGKLKEAEKMYQQALAGYEKAL-G--PDHTSTLVTVNNLGNLYSDQGKL 1105

Query:   534 EQAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL-RA 590
             ++A K+ Q+AL  Y  A  P   ST+  +   +G++Y   G   ++   ++ A++   +A
Sbjct:  1106 KEAEKMYQQALAGYEKAVGPDHTSTLDTVN-NLGILYSDQGKLKEAEKMYQQALAGYEKA 1164

Query:   591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650
             +    ++   + +N +G     +  + EA E++++A +  E+  GP H  TL   +NL  
Sbjct:  1165 LSPDHTSTL-MTVNNLGSLYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLMTVNNLGI 1223

Query:   651 TYDAIGR 657
              Y   G+
Sbjct:  1224 LYSDQGK 1230

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ASPGD|ASPL0000061567 AN1071 [Emericella nidulans (taxid:162425)]

 Score = 200 (75.5 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 100/452 (22%), Positives = 177/452 (39%)

Query:   231 LISSGDNPQKALELALRAAKSFEIGA-NGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE 289
             L+S G    + LE  +   K  E    NG      +  +  +A+ Y S G+ NEA  +  
Sbjct:   731 LLSDG----RYLEAEVLYVKLLEFQKRNGPEDPATLRSMANLASTYWSQGRLNEAEKLEV 786

Query:   290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349
             Q +E   I  G EH          L  TY   G+   +       +E  K VLG   P  
Sbjct:   787 QVMETSKIVLGAEHP-DTLTSMANLASTYRNQGRWNEAEKLEVQVMESSKTVLGAEHPDT 845

Query:   350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPASLEEAADRRLMGLICETKG 406
               +   +A       +F EA+K     ++  K       PA+L   A+   +    + +G
Sbjct:   846 LSSMSNIASTLWNQGRFHEAEKLFIHVMETRKIVLGVEHPATLTSMAN---LASTYQNQG 902

Query:   407 D-HEAA-LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
               +EA  LE  V+ +  +    +     S   ++  TY S  R++EA   + + +     
Sbjct:   903 RWNEAEKLEIQVMETSKITLGVKHPSTLSSMANLASTYRSQGRWNEAEKLFLQVMEIRNI 962

Query:   465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
               G  HP+  S    LA  Y   G+  E++   E  +    K V G       S + +++
Sbjct:   963 VLGAKHPSTLSSMANLASTYRNQGRWNEAEKL-EVQVIDTAKTVLGAEHPSTLSSMANLA 1021

Query:   525 SIYESMNELEQAIKLLQKALKIYNDAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFK 582
             S Y +     +A +L  + +       G +  +T++ + A +   Y+  G ++++     
Sbjct:  1022 STYRNQGRWNEAERLEVQVINTAKTVLGAEHPNTLSSM-ANLASTYWSQGRWNEAEKLEV 1080

Query:   583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
               I   + +   K      ++  +     ++   N+A +LF       +   G  HPDTL
Sbjct:  1081 QVIEAFKTVLGSKHPNTLRSIAHLASTYQKQGRWNKAEKLFMHVTETRKIMLGVEHPDTL 1140

Query:   643 GVYSNLAGTYDAIGREEKLGTANPDVDDEKRR 674
                +NLA TY   GR +K    +  V + ++R
Sbjct:  1141 SSMANLASTYRNQGRWDKAEKLSMQVMETRKR 1172

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 162 (62.1 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 41/145 (28%), Positives = 76/145 (52%)

Query:   442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
             Y    +YD+A   Y++AL   +     +HP++A     LA +Y R GKL ++    E A+
Sbjct:  1118 YNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAV 1177

Query:   502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
              I +K   G     +A+ L +++ +Y  M + + A+ L ++A+KIY D+ G+     G  
Sbjct:  1178 DIRQKSF-GPKHPSVATALVNLAVLYCQMKKQDDALPLYERAMKIYEDSLGRMHPRVGET 1236

Query:   562 AQ-MGVMYYMLGNYSDSYDSFKNAI 585
              + + V+ Y  G+Y  + + +K A+
Sbjct:  1237 LKNLAVLRYEEGDYEKAAELYKRAM 1261

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

UNIPROTKB|Q21592 klc-1 "Protein KLC-1, isoform a" [Caenorhabditis elegans (taxid:6239)]

 Score = 193 (73.0 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 63/258 (24%), Positives = 120/258 (46%)

Query:   417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
             L  +  +  +   +VA++   +   Y +   + +A    +KAL+      GENH +VA+ 
Sbjct:   228 LEDVVKVHGNVHLDVATMLNVLAIVYRNQENFKDAAIYLEKALSIRVQCCGENHHSVAAT 287

Query:   477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
                LA  Y + GK +ES+  C+ AL I  K + G    ++A  LT++  + + + + E+ 
Sbjct:   288 LNNLAIAYGKRGKYKESEPLCKRALEI-RKNLLGPNHPDVAKQLTNLGIVTQQLEKYEET 346

Query:   537 IKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595
                 ++AL IYN A P     V   + Q+  ++   G Y ++ + +KN +SK+   G + 
Sbjct:   347 ENYFKQALSIYNRAFPENHQNVIKTKNQLASVFLKQGKYQEAEEMYKNILSKVAITGNKP 406

Query:   596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655
                + +A ++      QR  I + V+  +E+ ++          + +    NLA  Y   
Sbjct:   407 --IWRIAEDREER---QRNGIPK-VD--DESFNV--NPTTVMDSNVMSTIKNLAAVYRKQ 456

Query:   656 GREEKLGTANPDVDDEKR 673
             G+EE  GT    +  +K+
Sbjct:   457 GKEEAAGTLEEALGAKKQ 474

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00002214 klc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 193 (73.0 bits), Expect = 8.1e-12, P = 8.1e-12
 Identities = 63/258 (24%), Positives = 120/258 (46%)

Query:   417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
             L  +  +  +   +VA++   +   Y +   + +A    +KAL+      GENH +VA+ 
Sbjct:   248 LEDVVKVHGNVHLDVATMLNVLAIVYRNQENFKDAAIYLEKALSIRVQCCGENHHSVAAT 307

Query:   477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
                LA  Y + GK +ES+  C+ AL I  K + G    ++A  LT++  + + + + E+ 
Sbjct:   308 LNNLAIAYGKRGKYKESEPLCKRALEI-RKNLLGPNHPDVAKQLTNLGIVTQQLEKYEET 366

Query:   537 IKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595
                 ++AL IYN A P     V   + Q+  ++   G Y ++ + +KN +SK+   G + 
Sbjct:   367 ENYFKQALSIYNRAFPENHQNVIKTKNQLASVFLKQGKYQEAEEMYKNILSKVAITGNKP 426

Query:   596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655
                + +A ++      QR  I + V+  +E+ ++          + +    NLA  Y   
Sbjct:   427 --IWRIAEDREER---QRNGIPK-VD--DESFNV--NPTTVMDSNVMSTIKNLAAVYRKQ 476

Query:   656 GREEKLGTANPDVDDEKR 673
             G+EE  GT    +  +K+
Sbjct:   477 GKEEAAGTLEEALGAKKQ 494

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0051295 "establishment of meiotic spindle localization" evidence=IGI;IMP

GO:0040038 "polar body extrusion after meiotic divisions" evidence=IGI;IMP

WB|WBGene00002215 klc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 191 (72.3 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 69/276 (25%), Positives = 128/276 (46%)

Query:   319 AMLGQLENSLMCYT-TGLEVQKQ-VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376
             A + Q ++     T T ++V  Q V  ET   +G       E  + A QF++     QMA
Sbjct:   136 ASIKQFDDGTQSDTKTSVDVGPQPVTNETLQELGFGPE--DEEDMNASQFNQPTPANQMA 193

Query:   377 LDIHKDNGSPASLEEAADRRLMGLICE--TKGDHEAALE--HLVLASMTMIANDQDAEVA 432
                +     PA L     R L  L+ +  ++G +E A+      L  +   +     +VA
Sbjct:   194 ASANVGYEIPARL-----RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA 248

Query:   433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
             ++   +   Y   ++Y EA     +AL+  +   GE+HPAVA+    LA ++ + GK ++
Sbjct:   249 TMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKD 308

Query:   493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
             ++  C+ AL I EK V G    ++A  L +++ + ++  + E+  K  ++AL+IY    G
Sbjct:   309 AEPLCKRALEIREK-VLGDDHPDVAKQLNNLALLCQNQGKYEEVEKYYKRALEIYESKLG 367

Query:   553 QQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
                  VA  +  +   Y   G Y ++ + +K  +++
Sbjct:   368 PDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTR 403

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0016938 "kinesin I complex" evidence=IPI

GO:0019894 "kinesin binding" evidence=IPI

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048489 "synaptic vesicle transport" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0051295 "establishment of meiotic spindle localization" evidence=IGI;IMP

GO:0040038 "polar body extrusion after meiotic divisions" evidence=IGI;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	712
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-10
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 17/111 (15%)

Query: 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495
            ++G+ Y  L  YDEA   Y+KAL     N        A  +  LA  Y + GK  E+  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDN--------ADAYYNLAAAYYKLGKYEEALE 55

Query: 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
             E AL +             A    ++   Y  + + E+A++  +KAL++
Sbjct: 56  DYEKALELDPDN---------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           ++A+   ++      L  YDEA    +KAL   +   GE+HP  A     LA +Y   G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGD 61

Query: 490 LRESKSYCENALRIYEK 506
             E+  Y E AL + E 
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
           HP +A+    LA +  R G   E+    E AL +  + +    P E A  L +++ +Y +
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHP-ETARALNNLARLYLA 58

Query: 530 MNELEQAIKLLQKALKIY 547
           + + ++A++ L+KAL + 
Sbjct: 59  LGDYDEALEYLEKALALR 76

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
            LG+ Y  LG  + +L  Y   LE+        DP   +    LA A+ +  ++ EA + 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418
            + AL++  DN              +GL     G +E ALE    A
Sbjct: 57  YEKALELDPDNAKA--------YYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.8 bits (122), Expect = 5e-07
 Identities = 66/297 (22%), Positives = 119/297 (40%), Gaps = 25/297 (8%)

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
              L LA +        AE  ++  +       L    EA    ++AL      +   + 
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEAL------ELLPNS 56

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
            +A + + LA    + G+L E+    E AL +   P        +A  L ++  + E++ 
Sbjct: 57  DLAGLLLLLALALLKLGRLEEALELLEKALELELLP-------NLAEALLNLGLLLEALG 109

Query: 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591
           + E+A++LL+KAL +  D    ++ +A          Y LG+Y ++ + ++ A+     +
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALG------ALYELGDYEEALELYEKALELDPEL 163

Query: 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
            E        AL  +G          EA+EL E+A  +   +      +   +Y  L   
Sbjct: 164 NE-----LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218

Query: 652 YDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGI 708
            +A+   EK    +PD  +    LA LL E GR        LE  L+ +  + N G+
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA-LEKALELDPDLYNLGL 274

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.0 bits (120), Expect = 8e-07
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 25/246 (10%)

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
                 + AL   +  +  +    + K          A     +GL+ E  G +E ALE 
Sbjct: 58  LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L       +A D D ++A    ++G     L  Y+EA   Y+KAL              A
Sbjct: 118 L----EKALALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNEL-----A 167

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
              + L  +    G+  E+    E AL++                  D +    ++  L 
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPD---------------DDAEALLNLGLLY 212

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
             +   ++AL+ Y  A       A     + ++   LG Y ++ ++ + A+     +   
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272

Query: 595 KSAFFG 600
             A   
Sbjct: 273 GLALLL 278

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321
            +L   L+ +A +   LG Y+EA+ +LE+++E+    E  E           L   Y  L
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALEL--ARELGEDHPETARALNNLARLYLAL 59

Query: 322 GQLENSLMCYTTGLEVQKQ 340
           G  + +L      L +++ 
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           +Y  + + ++A++  +KAL++  D     +  A     +   YY LG Y ++ + ++ A+
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPD-----NADA--YYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
                           A   +GLA  +     EA+E +E+A  +   
Sbjct: 62  ELDPD--------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
           ALN + L   +    +EA+EL E+A  +   E G  HP+T    +NLA  Y A+G  ++
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALGDYDE 64

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282
            LL         G +  +ALE   +A +      +   +       + +AA Y  LG+Y 
Sbjct: 2   ALLNLGNLYYKLG-DYDEALEYYEKALE-----LDPDNAD----AYYNLAAAYYKLGKYE 51

Query: 283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340
           EA+   E+++E+                +  LG  Y  LG+ E +L  Y   LE+   
Sbjct: 52  EALEDYEKALEL---------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +G +    GD++ ALE+   A       + D + A    ++   Y  L +Y+EA   Y+K
Sbjct: 6   LGNLYYKLGDYDEALEYYEKAL------ELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
           AL        E  P  A  +  L   Y + GK  E+    E AL +   
Sbjct: 60  AL--------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
              L      LG  + +L      LE+ ++ LGE  P        LA  ++    + EA 
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 371 KFCQMALDIHKD 382
           ++ + AL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 26/217 (11%)

Query: 247 RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306
            A +  E     +    L   L  +  +  +LG+Y EA+ +LE+++ +    +  E  LA
Sbjct: 77  EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLA 136

Query: 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF 366
             A           LG  E +L  Y   LE     L      + E    L        ++
Sbjct: 137 LGA--------LYELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRY 183

Query: 367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426
            EA +  + AL ++ D+ + A L        +GL+    G +E ALE+         A +
Sbjct: 184 EEALELLEKALKLNPDDDAEALLN-------LGLLYLKLGKYEEALEYY------EKALE 230

Query: 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
            D + A    ++    L L RY+EA  A +KAL    
Sbjct: 231 LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI 616
           +A     + ++   LG+Y ++ +  + A+   R +GE        ALN +    +     
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGED-HPETARALNNLARLYLALGDY 62

Query: 617 NEAVELFEEARSILEQ 632
           +EA+E  E+A ++ E 
Sbjct: 63  DEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 41/78 (52%)

Query: 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572
             ++A+ L +++ +   + + ++A++LL+KAL++  +        A     +  +Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 573 NYSDSYDSFKNAISKLRA 590
           +Y ++ +  + A++   A
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           +  +Y  LG Y+EA+   E+++E+       ++A A    +  L   Y  LG+ E +L  
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALEL-----DPDNADA----YYNLAAAYYKLGKYEEALED 56

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382
           Y   LE+        DP   +    L  A+ +  ++ EA +  + AL++  +
Sbjct: 57  YEKALEL--------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539
           L ++Y + G   E+  Y E AL +             A    ++++ Y  + + E+A++ 
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALED 56

Query: 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            +KAL++  D        A     +G+ YY LG Y ++ ++++ A+ 
Sbjct: 57  YEKALELDPD-------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 389 LEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSR 447
            + AA    + L+    GD++ ALE L  A  +     +   E A    ++   YL+L  
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 448 YDEAGFAYQKALTAFK 463
           YDEA    +KAL   +
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 237 NPQKALELALRAAKSFE-IGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
           +  +ALEL  +A +    +G +     E    L+ +A +Y +LG Y+EA+  LE+++ +
Sbjct: 20  DYDEALELLEKALELARELGED---HPETARALNNLARLYLALGDYDEALEYLEKALAL 75

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA 410
           E    L   + +   + EA ++ + AL++  DN              +       G +E 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA--------YYNLAAAYYKLGKYEE 52

Query: 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
           ALE    A       + D + A    ++G  Y  L +Y+EA  AY+KAL
Sbjct: 53  ALEDYEKAL------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 54/275 (19%), Positives = 98/275 (35%), Gaps = 42/275 (15%)

Query: 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG 334
             +L QY      L++++ I  + E  + A       + LG      G L  ++  +   
Sbjct: 570 ALALAQYYLGKGQLKKALAI--LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

Query: 335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD 394
           L +Q        P        LA+A+     +++A    + AL++  DN         A 
Sbjct: 628 LALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-------TEAQ 672

Query: 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             L  L+   K   E+A +   +A      + + A    +    GD YL    Y  A  A
Sbjct: 673 IGLAQLLLAAK-RTESAKK---IAKSLQKQHPKAALGFEL---EGDLYLRQKDYPAAIQA 725

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           Y+KAL    +         +   ++L      +G   E+    E  L+ +          
Sbjct: 726 YRKALKRAPS---------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV----- 771

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
                 T ++ +Y +  + ++AIK  Q  +K   D
Sbjct: 772 ----LRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
            P +      LA    +   + EA +  + AL++ ++ G     E A     +  +    
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELG-EDHPETARALNNLARLYLAL 59

Query: 406 GDHEAALEHL 415
           GD++ ALE+L
Sbjct: 60  GDYDEALEYL 69

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
            +G +YY LG+Y ++ + ++ A+                A   +  A  +     EA+E 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALE--------LDPDNADAYYNLAAAYYKLGKYEEALED 56

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
           +E+A   LE +     PD    Y NL   Y  +G+ E+
Sbjct: 57  YEKA---LELD-----PDNAKAYYNLGLAYYKLGKYEE 86

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 76/376 (20%), Positives = 133/376 (35%), Gaps = 53/376 (14%)

Query: 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399
                 DP        L EA++    F +A ++   A ++  +N        AA  +L G
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA-------AARTQL-G 404

Query: 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
           +   ++GD   A+  L  A+        D E+   D  +  +YL   ++D       KAL
Sbjct: 405 ISKLSQGDPSEAIADLETAA------QLDPELGRADLLLILSYLRSGQFD-------KAL 451

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
            A K    +  P  AS+   L  +Y   G L +++   E AL I     P   P      
Sbjct: 452 AAAK-KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE----PDFFP-----A 501

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579
             +++ I       + AI+  +K L I          +AG+  + G     +     + +
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561

Query: 580 SFKNAISKL--------------RAIGERKSAFFGVALNQ-----MGLACVQRYSINEAV 620
                I                 +A+     A      +      +G A +    +N+AV
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621

Query: 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLK 680
             F++  ++               Y+ +     AI   ++     PD  + +  LA+LL 
Sbjct: 622 SSFKKLLALQPDS-ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680

Query: 681 EAGRVRSRK--AQSLE 694
            A R  S K  A+SL+
Sbjct: 681 AAKRTESAKKIAKSLQ 696

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	712
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.89
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
KOG2003	840	consensus TPR repeat-containing protein [General f	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.86
PLN03218	1060	maturation of RBCL 1; Provisional	99.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.83
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
PLN03218	1060	maturation of RBCL 1; Provisional	99.8
PLN03077	857	Protein ECB2; Provisional	99.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.79
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.79
KOG1129	478	consensus TPR repeat-containing protein [General f	99.78
PRK04841	903	transcriptional regulator MalT; Provisional	99.78
PRK04841	903	transcriptional regulator MalT; Provisional	99.77
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.75
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.75
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.75
PLN03077	857	Protein ECB2; Provisional	99.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
PRK12370	553	invasion protein regulator; Provisional	99.72
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.71
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.71
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.71
PRK12370	553	invasion protein regulator; Provisional	99.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.68
PRK11189	296	lipoprotein NlpI; Provisional	99.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.68
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.68
PRK11189	296	lipoprotein NlpI; Provisional	99.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.66
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.66
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.66
KOG1125	579	consensus TPR repeat-containing protein [General f	99.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.64
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.62
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.62
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.62
KOG1125	579	consensus TPR repeat-containing protein [General f	99.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.61
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.56
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.56
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.5
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.49
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.48
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.42
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.4
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.39
PLN02789	320	farnesyltranstransferase	99.39
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.37
PLN02789	320	farnesyltranstransferase	99.36
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.29
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.23
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.2
PRK15359	144	type III secretion system chaperone protein SscB;	99.18
PRK15359	144	type III secretion system chaperone protein SscB;	99.17
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.17
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.17
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.16
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.13
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.09
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.08
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.07
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.06
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.06
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.0
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.98
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.97
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.96
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.93
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.92
KOG0553	304	consensus TPR repeat-containing protein [General f	98.91
KOG1585	308	consensus Protein required for fusion of vesicles	98.89
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.88
KOG0553	304	consensus TPR repeat-containing protein [General f	98.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.86
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.83
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.83
KOG1585	308	consensus Protein required for fusion of vesicles	98.82
KOG2471	696	consensus TPR repeat-containing protein [General f	98.81
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.78
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.73
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.71
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.7
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.69
KOG1586	288	consensus Protein required for fusion of vesicles	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.67
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.65
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.63
KOG1586	288	consensus Protein required for fusion of vesicles	98.62
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.53
KOG2471	696	consensus TPR repeat-containing protein [General f	98.52
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.52
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.52
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.49
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.48
PF12688	120	TPR_5: Tetratrico peptide repeat	98.44
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.41
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.4
PF12688	120	TPR_5: Tetratrico peptide repeat	98.4
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.37
PRK10803	263	tol-pal system protein YbgF; Provisional	98.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.32
PRK10803	263	tol-pal system protein YbgF; Provisional	98.3
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.3
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.3
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.27
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.27
PRK15331	165	chaperone protein SicA; Provisional	98.24
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.23
PRK11906	458	transcriptional regulator; Provisional	98.23
KOG4555	175	consensus TPR repeat-containing protein [Function	98.22
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.22
KOG4555	175	consensus TPR repeat-containing protein [Function	98.21
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.2
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.18
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.18
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.16
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.16
PRK11906	458	transcriptional regulator; Provisional	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.14
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.14
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.11
PRK15331	165	chaperone protein SicA; Provisional	98.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.11
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.11
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.04
KOG4234	271	consensus TPR repeat-containing protein [General f	98.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.02
KOG4234	271	consensus TPR repeat-containing protein [General f	98.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.92
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.92
PF13512	142	TPR_18: Tetratricopeptide repeat	97.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.9
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.89
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.86
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.85
PF13512	142	TPR_18: Tetratricopeptide repeat	97.85
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.78
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.78
PF13371	73	TPR_9: Tetratricopeptide repeat	97.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.72
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.7
PF13371	73	TPR_9: Tetratricopeptide repeat	97.7
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.66
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.62
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.61
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.58
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.46
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.44
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.43
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.41
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.37
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.36
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.34
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.34
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.33
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.32
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.3
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.28
PF13428	44	TPR_14: Tetratricopeptide repeat	97.26
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.21
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.19
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.15
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.13
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.1
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.09
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.05
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.04
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.04
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.96
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.93
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.9
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.86
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.86
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.84
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.8
PF13428	44	TPR_14: Tetratricopeptide repeat	96.79
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.73
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.73
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.64
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.61
PF13431	34	TPR_17: Tetratricopeptide repeat	96.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.47
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.42
PF13431	34	TPR_17: Tetratricopeptide repeat	96.36
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.29
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.28
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	96.27
KOG1258	577	consensus mRNA processing protein [RNA processing	96.19
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.15
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.11
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.97
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.76
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.74
KOG1258	577	consensus mRNA processing protein [RNA processing	95.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.6
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.43
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.34
KOG0687	393	consensus 26S proteasome regulatory complex, subun	95.28
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.27
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.12
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.01
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.98
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.9
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.78
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.67
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.6
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.53
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.52
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.22
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.22
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.18
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.17
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.02
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.96
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.62
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.6
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.54
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.43
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.41
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.11
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	93.11
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.04
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.99
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.85
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.73
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.6
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.47
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.44
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.4
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.35
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	92.24
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.2
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.08
PRK14707	2710	hypothetical protein; Provisional	91.95
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.82
PRK14707	2710	hypothetical protein; Provisional	91.75
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.65
KOG4014	248	consensus Uncharacterized conserved protein (conta	91.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.9
KOG4014	248	consensus Uncharacterized conserved protein (conta	90.78
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.72
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.76
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.48
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.34
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	88.89
KOG2908	380	consensus 26S proteasome regulatory complex, subun	88.5
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.49
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	88.35
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	88.17
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	87.96
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.93
KOG3364	149	consensus Membrane protein involved in organellar	87.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.83
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.75
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.69
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	87.68
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.29
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.1
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	87.08
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	86.99
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	86.93
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.4
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	86.23
PRK10941	269	hypothetical protein; Provisional	86.21
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.21
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.87
KOG3364	149	consensus Membrane protein involved in organellar	85.81
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.79
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	85.69
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	85.27
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	85.16
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	85.02
COG3947	361	Response regulator containing CheY-like receiver a	84.94
PRK10941	269	hypothetical protein; Provisional	84.69
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	84.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.86
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	83.78
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	83.63
KOG2908	380	consensus 26S proteasome regulatory complex, subun	83.55
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.13
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.69
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	81.52
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	81.4
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.25
KOG4422	625	consensus Uncharacterized conserved protein [Funct	80.71
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	80.64
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.06

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-43  Score=350.95  Aligned_cols=429  Identities=19%  Similarity=0.261  Sum_probs=285.5

Q ss_pred             cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l  271 (712)
                      ..+..+...|+|.+|.+........+|.....++.++..++...+ +++....-..+++..         |..+++|.++
T Consensus        53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r-~d~s~a~~~~a~r~~---------~q~ae~ysn~  122 (966)
T KOG4626|consen   53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSR-LDKSSAGSLLAIRKN---------PQGAEAYSNL  122 (966)
T ss_pred             HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccc-hhhhhhhhhhhhhcc---------chHHHHHHHH
Confidence            344455556666666655556666666666666666666666654 666666655555443         4456667777


Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (712)
                      |.++...|++++|+.+|+.++++.     ++    .+.+|.++|.++...|+.+.|..+|..++++        +|....
T Consensus       123 aN~~kerg~~~~al~~y~~aiel~-----p~----fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~c  185 (966)
T KOG4626|consen  123 ANILKERGQLQDALALYRAAIELK-----PK----FIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYC  185 (966)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhcC-----ch----hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------Ccchhh
Confidence            777777777777777777776664     22    2345667777777777777777777777766        566666


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (712)
                      +...+|.++...|+..+|..+|.+|++..+..        +.+|.+||.++..+|+.-.|+.+|++|+      ..+|..
T Consensus       186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAv------kldP~f  251 (966)
T KOG4626|consen  186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAV------KLDPNF  251 (966)
T ss_pred             hhcchhHHHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhh------cCCCcc
Confidence            66677777777777777777777776655422        3356677777777777777777777666      456666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      ..+|.+||.+|-..+.|+.|+.+|.+|+.+        .|..+.++.++|.+|+.+|..+-|+..|++++++        
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------  315 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------  315 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------
Confidence            667777777777777777777777777666        6666667777777777777777777777777666        


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (712)
                       .|....++++||..+...|+..+|..+|.+|+.+.+..       +.+.++||.+|..+|.+++|..+|.++++++   
T Consensus       316 -~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v~---  384 (966)
T KOG4626|consen  316 -QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEVF---  384 (966)
T ss_pred             -CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhhC---
Confidence             44456667777777777777777777777777665544       3566677777777777777777777776652   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCC
Q 005139          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTA  664 (712)
Q Consensus       592 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~  664 (712)
                           +.++.++.+||.+|.++|++++|+.+|++|+.+        .|..++++.|+|.+|..+|+       +......
T Consensus       385 -----p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  385 -----PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             -----hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence                 345566677777777777777777777777776        67777777777777777776       4444456


Q ss_pred             ChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          665 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       665 ~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      +|..+++..+||.+|...|+..+|+ ..|+++|++.|+
T Consensus       452 nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPD  488 (966)
T KOG4626|consen  452 NPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPD  488 (966)
T ss_pred             CcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCC
Confidence            6777777777777777777777777 777777777666

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-42  Score=342.77  Aligned_cols=418  Identities=19%  Similarity=0.240  Sum_probs=377.7

Q ss_pred             ccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHh
Q 005139          203 KLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN  282 (712)
Q Consensus       203 ~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~  282 (712)
                      ++..++....+....|..++++.++|.+|...|+ ++.|+.+|+.++++-         |+.+++|.++|.++...|+.+
T Consensus        98 ~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~---------p~fida~inla~al~~~~~~~  167 (966)
T KOG4626|consen   98 LDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIELK---------PKFIDAYINLAAALVTQGDLE  167 (966)
T ss_pred             hhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcC---------chhhHHHhhHHHHHHhcCCCc
Confidence            3334445556777889999999999999999997 999999999999865         777999999999999999999


Q ss_pred             HHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (712)
Q Consensus       283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (712)
                      .|...|..++++.     |.    .+-+...+|.++...|+..+|..+|.+|++.        .|.++.+|.+||.++..
T Consensus       168 ~a~~~~~~alqln-----P~----l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~  230 (966)
T KOG4626|consen  168 LAVQCFFEALQLN-----PD----LYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNA  230 (966)
T ss_pred             ccHHHHHHHHhcC-----cc----hhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhh
Confidence            9999999999986     22    2335788999999999999999999999998        78999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (712)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (712)
                      +|+...|+..|++|+.+.+...        .+|.+||.+|...+.|++|+.+|.+|+      ...|..+.++.++|.+|
T Consensus       231 ~Gei~~aiq~y~eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl------~lrpn~A~a~gNla~iY  296 (966)
T KOG4626|consen  231 QGEIWLAIQHYEEAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRAL------NLRPNHAVAHGNLACIY  296 (966)
T ss_pred             cchHHHHHHHHHHhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHH------hcCCcchhhccceEEEE
Confidence            9999999999999999876654        389999999999999999999999998      56888899999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005139          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (712)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (712)
                      +.+|..+-|+..|++++++        .|....++.+||..+-..|+..+|..+|.+++.+         .+..+.++++
T Consensus       297 yeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~N  359 (966)
T KOG4626|consen  297 YEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNN  359 (966)
T ss_pred             eccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHH
Confidence            9999999999999999999        8999999999999999999999999999999999         4456888999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 005139          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (712)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (712)
                      ||.+|..+|.+++|..+|.++++..+..       +.+..+||.+|..+|++++|+.+|++|+.+        .+.++.+
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda  424 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADA  424 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHH
Confidence            9999999999999999999999998766       568899999999999999999999999997        4678999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHH
Q 005139          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRL  675 (712)
Q Consensus       603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~l  675 (712)
                      +.++|..|..+|+...|+.+|.+|+.+        +|..+++..|||.+|...|+       ++......|+.++++.++
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl  496 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL  496 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence            999999999999999999999999999        99999999999999999999       555668899999999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          676 AELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       676 a~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      +.++.-.-+|.+-- +.+.++.+...+
T Consensus       497 lh~lq~vcdw~D~d-~~~~kl~sivrd  522 (966)
T KOG4626|consen  497 LHCLQIVCDWTDYD-KRMKKLVSIVRD  522 (966)
T ss_pred             HHHHHHHhcccchH-HHHHHHHHHHHH
Confidence            99888777776655 555666555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=5.4e-30  Score=286.63  Aligned_cols=374  Identities=17%  Similarity=0.179  Sum_probs=289.8

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (712)
                      .+..+..+|..++..|+ |++|+.+|.+++.+.         |+ ...+.++|.+|..+|++++|+..+++++++.    
T Consensus       126 ~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~---------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----  190 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK---------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELD----  190 (615)
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence            45678899999999997 999999999999764         22 3468899999999999999999999999885    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------HHHhCCCC----------
Q 005139          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-----------------------KQVLGETD----------  346 (712)
Q Consensus       300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~----------  346 (712)
                       ++..    .+++.+|.+|..+|++++|+..|..++.+.                       ...+....          
T Consensus       191 -p~~~----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~  265 (615)
T TIGR00990       191 -PDYS----KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVG  265 (615)
T ss_pred             -CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence             4443    358999999999999999998776553220                       00000000          


Q ss_pred             ----------------------hhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005139          347 ----------------------PRVGETCRYLAEAH---VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI  401 (712)
Q Consensus       347 ----------------------~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~  401 (712)
                                            +.....+..++..+   ...++|++|+.+|++++....     ..+..+.++..+|.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~  340 (615)
T TIGR00990       266 NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTF  340 (615)
T ss_pred             HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHH
Confidence                                  00111112222221   123678899999999887641     224456789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005139          402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA  481 (712)
Q Consensus       402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  481 (712)
                      +..+|++++|+.+|++++.      ..|....++..+|.++...|++++|+.+|++++++        .|....++..+|
T Consensus       341 ~~~~g~~~eA~~~~~kal~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg  406 (615)
T TIGR00990       341 KCLKGKHLEALADLSKSIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRA  406 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence            9999999999999999984      45677788999999999999999999999999998        677788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 005139          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE  561 (712)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  561 (712)
                      .++...|++++|+.+|++++.+         .|.....+..+|.++..+|++++|+..|++++...+..       ..++
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~  470 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVY  470 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHH
Confidence            9999999999999999999998         34456779999999999999999999999999876544       3678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 005139          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (712)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~  641 (712)
                      ..+|.++...|++++|+..|++++.+........ ......+...+.++...|++++|+.+|++++.+        +|+.
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~-~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~  541 (615)
T TIGR00990       471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY-MNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPEC  541 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCc
Confidence            8999999999999999999999998754322111 111122233334444579999999999999988        6776


Q ss_pred             HHHHHHHHHHHHHccc
Q 005139          642 LGVYSNLAGTYDAIGR  657 (712)
Q Consensus       642 ~~~~~~La~~~~~~g~  657 (712)
                      ..++..+|.+|..+|+
T Consensus       542 ~~a~~~la~~~~~~g~  557 (615)
T TIGR00990       542 DIAVATMAQLLLQQGD  557 (615)
T ss_pred             HHHHHHHHHHHHHccC
Confidence            6677777777777776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.3e-30  Score=291.68  Aligned_cols=387  Identities=16%  Similarity=0.132  Sum_probs=306.6

Q ss_pred             cccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139          190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (712)
Q Consensus       190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~  269 (712)
                      +...+..+...|+|..|+..|..+....|+ ...+.++|.+|...|+ +++|+..+.+|+++.         |....+++
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~---------p~~~~a~~  198 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGD-WEKVVEDTTAALELD---------PDYSKALN  198 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC---------CCCHHHHH
Confidence            446677788889999999888888888886 6789999999999997 999999999999863         55678899


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhh-------------------------hcccc-hH-HH---------------
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIE-------------------------EGQEH-AL-AK---------------  307 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~~-~~-~~---------------  307 (712)
                      .+|.+|..+|++++|+..|..++.+....                         ..+.. +. ..               
T Consensus       199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (615)
T TIGR00990       199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA  278 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence            99999999999999998886654321100                         00000 00 00               


Q ss_pred             ------------HHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          308 ------------FAGHMQLGDTY---AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF  372 (712)
Q Consensus       308 ------------~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (712)
                                  ...+..++..+   ...++|++|+.+|++++...     ...|....++..+|.++...|++++|+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~  353 (615)
T TIGR00990       279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALAD  353 (615)
T ss_pred             hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                        00011222211   12357888888888888762     22578888999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005139          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (712)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (712)
                      |++++.+.+..        ..++..+|.++...|++++|+.+|++++..      .|....+++.+|.+++..|++++|+
T Consensus       354 ~~kal~l~P~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~  419 (615)
T TIGR00990       354 LSKSIELDPRV--------TQSYIKRASMNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKGEFAQAG  419 (615)
T ss_pred             HHHHHHcCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999886543        347889999999999999999999999853      4555788999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (712)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (712)
                      .+|++++.+        .|....++..+|.++..+|++++|+.+|++++...         |....++..+|.++...|+
T Consensus       420 ~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------P~~~~~~~~lg~~~~~~g~  482 (615)
T TIGR00990       420 KDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---------PEAPDVYNYYGELLLDQNK  482 (615)
T ss_pred             HHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHccC
Confidence            999999998        78888899999999999999999999999999883         3456789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ  612 (712)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~  612 (712)
                      +++|+..|++++.+.+............+...+.++...|++++|+.++++++.+     +   +....++..+|.++.+
T Consensus       483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l-----~---p~~~~a~~~la~~~~~  554 (615)
T TIGR00990       483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII-----D---PECDIAVATMAQLLLQ  554 (615)
T ss_pred             HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----C---CCcHHHHHHHHHHHHH
Confidence            9999999999999876542222222223333334444579999999999999985     1   2234578899999999


Q ss_pred             hCCHHHHHHHHHHHHHHHH
Q 005139          613 RYSINEAVELFEEARSILE  631 (712)
Q Consensus       613 ~g~~~~A~~~~~~al~~~~  631 (712)
                      +|++++|+.+|++++++.+
T Consensus       555 ~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       555 QGDVDEALKLFERAAELAR  573 (615)
T ss_pred             ccCHHHHHHHHHHHHHHhc
Confidence            9999999999999999843

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=1.4e-28  Score=255.49  Aligned_cols=381  Identities=38%  Similarity=0.497  Sum_probs=323.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005139          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (712)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (712)
                      .+.....++..++.....+..+.+.+....++++..++....    .....+......++..+.+++|....++...+..
T Consensus        84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~  159 (508)
T KOG1840|consen   84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV  159 (508)
T ss_pred             cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence            456667778888888888777888888888888877665311    1112355567777778888888887776654321


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                                    ...++..+...-+.+..+..+...+.+..+..+..+|....+..+++..|..+|+|+.|+..++.+
T Consensus       160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A  225 (508)
T KOG1840|consen  160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA  225 (508)
T ss_pred             --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                          112333344444444666777777777777788889999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (712)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (712)
                      +++..+..+                                        ..++.+......+|.+|..++++++|+.+|+
T Consensus       226 l~~l~k~~G----------------------------------------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~  265 (508)
T KOG1840|consen  226 LRILEKTSG----------------------------------------LKHLVVASMLNILALVYRSLGKYDEAVNLYE  265 (508)
T ss_pred             HHHHHHccC----------------------------------------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            988544432                                        1344555556689999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (712)
                      +|+.+.+...|+++|..+.++.+||.+|...|+|++|..++++|++|+.+. .+..++.....+.+++.++..++++++|
T Consensus       266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            999999999999999999999999999999999999999999999999994 4778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC
Q 005139          537 IKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (712)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~  615 (712)
                      ..++++++++..+.++..+ .++.++.+||.+|+.+|+|.+|.++|++|+.+.++..+.....++..++.||..|.+.++
T Consensus       345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            9999999999998888877 899999999999999999999999999999999999888778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +.+|..+|.++..+. +..|++||++...+.+||.+|..+|+
T Consensus       425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~  465 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGN  465 (508)
T ss_pred             cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHccc
Confidence            999999999999999 99999999999999999999999998

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=1.8e-29  Score=299.10  Aligned_cols=420  Identities=17%  Similarity=0.162  Sum_probs=282.7

Q ss_pred             cccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005139          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG  279 (712)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g  279 (712)
                      .|++.+|+..+.......|.....+..+|..+...|+ +++|+.+|++++...         |....++..+|.++...|
T Consensus       444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g  513 (899)
T TIGR02917       444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE---------PDFFPAAANLARIDIQEG  513 (899)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCC
Confidence            3444444444444444555555666666666666664 666666666665432         222445556666666666


Q ss_pred             CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (712)
Q Consensus       280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (712)
                      ++++|+..|++++...     +.+    ..++..++.++...|++++|+.++.+++..        +|.....+..++.+
T Consensus       514 ~~~~A~~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  576 (899)
T TIGR02917       514 NPDDAIQRFEKVLTID-----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQY  576 (899)
T ss_pred             CHHHHHHHHHHHHHhC-----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHH
Confidence            6666666666666543     222    223556666666666666666666666555        34444556666666


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      +...|++++|+.++++++...+..        ..++..+|.++...|++++|+.+|++++..      .+....++..+|
T Consensus       577 ~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~  642 (899)
T TIGR02917       577 YLGKGQLKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLA  642 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHH
Confidence            777777777777776665543221        235667777777777777777777776632      233345666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (712)
                      .++...|++++|+.+|++++..        .|....++..++.++...|++++|+.+++.+....         +.....
T Consensus       643 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~  705 (899)
T TIGR02917       643 DAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALG  705 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHH
Confidence            7777777777777777777765        55556667777777777777777777777665552         223456


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (712)
                      +..+|.++...|++++|+..|++++...+..        ..+..++.++...|++++|...+++++...        +..
T Consensus       706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~  769 (899)
T TIGR02917       706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PND  769 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCC
Confidence            7778888888888888888888888764332        355677888888888888888888877641        122


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc------hhhhCCCChhHHHHHH
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR------EEKLGTANPDVDDEKR  673 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~------~~~l~~~~p~~~~~~~  673 (712)
                      ..++..+|.+|...|++++|+.+|+++++.        +|+...++.+++.++...|+      .+......|+.+..+.
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  841 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILD  841 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHH
Confidence            467888888888888888888888888887        77778888888888888877      3333345667777788


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          674 RLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       674 ~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .+|.++...|++++|. ..|+++++.+|.
T Consensus       842 ~~~~~~~~~g~~~~A~-~~~~~a~~~~~~  869 (899)
T TIGR02917       842 TLGWLLVEKGEADRAL-PLLRKAVNIAPE  869 (899)
T ss_pred             HHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            8888888888888888 888888888775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=5.2e-29  Score=295.23  Aligned_cols=424  Identities=18%  Similarity=0.205  Sum_probs=364.2

Q ss_pred             ccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139          191 NAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (712)
Q Consensus       191 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~  270 (712)
                      ...+..+...|++.+|++.+..+...+|.....+..++..+...|+ +++|+..|++++...         |....++..
T Consensus       469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~---------~~~~~~~~~  538 (899)
T TIGR02917       469 NLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTID---------PKNLRAILA  538 (899)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------cCcHHHHHH
Confidence            3445567778888888888888888899999999999999999997 999999999998753         334667888


Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (712)
                      ++.++...|++++|+.++++++...     +...    ..+..++.+|...|++++|+..+++++..        .|...
T Consensus       539 l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~  601 (899)
T TIGR02917       539 LAGLYLRTGNEEEAVAWLEKAAELN-----PQEI----EPALALAQYYLGKGQLKKALAILNEAADA--------APDSP  601 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-----ccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCH
Confidence            9999999999999999999998765     3332    34788999999999999999999998876        45666


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      .++..+|.++...|++++|+.+|++++...+..        ...+..+|.++...|++++|+.+|++++.      ..|.
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~  667 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS--------ALALLLLADAYAVMKNYAKAITSLKRALE------LKPD  667 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCC
Confidence            789999999999999999999999999875432        23688999999999999999999999874      3455


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ...++..++.++...|++++|+.+++.+...        .+.....+..+|.++...|++++|+..|++++.....    
T Consensus       668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----  735 (899)
T TIGR02917       668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS----  735 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----
Confidence            5678899999999999999999999988776        5666778899999999999999999999999987322    


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                        .    ..+..++.++...|++++|+..+++++...+..       ..++..+|.+|...|++++|+.+|+++++..  
T Consensus       736 --~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--  800 (899)
T TIGR02917       736 --S----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKKA--  800 (899)
T ss_pred             --c----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--
Confidence              1    457789999999999999999999998865432       4678899999999999999999999999852  


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCC
Q 005139          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGT  663 (712)
Q Consensus       591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~  663 (712)
                            +....++..+|.++...|+ .+|+.++++++.+        .|+...++..+|.+|...|+       .+....
T Consensus       801 ------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  865 (899)
T TIGR02917       801 ------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVN  865 (899)
T ss_pred             ------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                  2234788999999999999 8899999999998        67777888999999999999       455556


Q ss_pred             CChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005139          664 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  698 (712)
Q Consensus       664 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~  698 (712)
                      ..|.+..++..++.++.+.|++++|. +.|+++++
T Consensus       866 ~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  899 (899)
T TIGR02917       866 IAPEAAAIRYHLALALLATGRKAEAR-KELDKLLN  899 (899)
T ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHhC
Confidence            77888899999999999999999999 99998873

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1.9e-28  Score=291.52  Aligned_cols=449  Identities=14%  Similarity=0.056  Sum_probs=340.4

Q ss_pred             cCCCcccccccccccCccccccCCCCCChHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLL-KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHV  270 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~-~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~  270 (712)
                      ..+..+...|++++|++.+..+...+|.....-. .........|+ +++|+..++++++..         |....++..
T Consensus       117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~---------P~~~~~~~~  186 (1157)
T PRK11447        117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY---------PGNTGLRNT  186 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC---------CCCHHHHHH
Confidence            3445677889999999888887777776654322 22222333466 999999999998764         444667888


Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhh-----------hc------------------ccchHH-HH-H----------
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIE-----------EG------------------QEHALA-KF-A----------  309 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~------------------~~~~~~-~~-~----------  309 (712)
                      +|.++...|++++|+..+++++......           ..                  +..... .. .          
T Consensus       187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~  266 (1157)
T PRK11447        187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA  266 (1157)
T ss_pred             HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999986532100           00                  000000 00 0          


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          310 ----GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       310 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                          ....+|.++...|++++|+..|+++++.        +|....++..+|.++...|++++|+.+|++++++.+....
T Consensus       267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~  338 (1157)
T PRK11447        267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN  338 (1157)
T ss_pred             CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence                0124488899999999999999999998        6777899999999999999999999999999988765432


Q ss_pred             CCCH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          386 PASL------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (712)
Q Consensus       386 ~~~~------~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (712)
                      ....      ........+|.++...|++++|+.+|++++..      .|....++..+|.++...|++++|+.+|++++
T Consensus       339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL  412 (1157)
T PRK11447        339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL  412 (1157)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1100      01123345688999999999999999999853      45556788899999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHH------------------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 005139          460 TAFKTNKGENHPAVA------------------------------------------SVFVRLADMYNRTGKLRESKSYC  497 (712)
Q Consensus       460 ~~~~~~~~~~~~~~~------------------------------------------~~~~~la~~~~~~g~~~~A~~~~  497 (712)
                      ++        .|...                                          ..+..+|.++...|++++|+.+|
T Consensus       413 ~~--------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~  484 (1157)
T PRK11447        413 RM--------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ  484 (1157)
T ss_pred             Hh--------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            76        22211                                          12334667777889999999999


Q ss_pred             HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 005139          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (712)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (712)
                      ++++++         .|....+++.+|.+|...|++++|+..+++++...+..       ...++.++.++...+++++|
T Consensus       485 ~~Al~~---------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------~~~~~a~al~l~~~~~~~~A  548 (1157)
T PRK11447        485 RQRLAL---------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-------PEQVYAYGLYLSGSDRDRAA  548 (1157)
T ss_pred             HHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHH
Confidence            999998         34456778999999999999999999999998765433       23455566666666777776


Q ss_pred             HHHHHHHH-------------------------------------HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 005139          578 YDSFKNAI-------------------------------------SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV  620 (712)
Q Consensus       578 ~~~~~~al-------------------------------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  620 (712)
                      +..++++.                                     .+++. .    +....++..+|.++...|++++|+
T Consensus       549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~----p~~~~~~~~La~~~~~~g~~~~A~  623 (1157)
T PRK11447        549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-Q----PPSTRIDLTLADWAQQRGDYAAAR  623 (1157)
T ss_pred             HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-C----CCCchHHHHHHHHHHHcCCHHHHH
Confidence            66655421                                     11111 1    112256788999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 005139          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL  693 (712)
Q Consensus       621 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l  693 (712)
                      .+|++++.+        +|+...++..++.+|...|+       .+.+....|+...++..+|.++...|++++|. +.|
T Consensus       624 ~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~  694 (1157)
T PRK11447        624 AAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ-RTF  694 (1157)
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH-HHH
Confidence            999999998        89999999999999999999       45555678888889999999999999999999 999


Q ss_pred             HHHHHhccc
Q 005139          694 ETLLDANSR  702 (712)
Q Consensus       694 ~~~l~~~p~  702 (712)
                      +.++...|.
T Consensus       695 ~~al~~~~~  703 (1157)
T PRK11447        695 NRLIPQAKS  703 (1157)
T ss_pred             HHHhhhCcc
Confidence            999998765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1.5e-27  Score=283.99  Aligned_cols=439  Identities=14%  Similarity=0.112  Sum_probs=333.6

Q ss_pred             ccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----------HHhcC----------
Q 005139          199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF-----------EIGAN----------  257 (712)
Q Consensus       199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~-----------~~~~~----------  257 (712)
                      ..+++.+|+..+..+...+|....+.+.+|..++..|+ +++|+..+++++...           +.+..          
T Consensus       159 ~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~  237 (1157)
T PRK11447        159 LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA  237 (1157)
T ss_pred             CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence            35778888888999999999999999999999999997 999999999875421           00000          


Q ss_pred             -------CCCCHHHHH-----------------HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHH
Q 005139          258 -------GKPSLELVM-----------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQ  313 (712)
Q Consensus       258 -------~~~~~~~~~-----------------~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  313 (712)
                             .+..+....                 ....+|.++...|++++|+..|++++++.     ++++    .++..
T Consensus       238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-----P~~~----~a~~~  308 (1157)
T PRK11447        238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-----PKDS----EALGA  308 (1157)
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHH
Confidence                   000010000                 11234888999999999999999999886     4444    35899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR-----------VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       314 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                      +|.+|...|++++|+.+|+++++....     .+.           .......+|.++...|++++|+.+|++++.+.+.
T Consensus       309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~  383 (1157)
T PRK11447        309 LGQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT  383 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999987321     111           1123345688899999999999999999998653


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------Chh--------------------
Q 005139          383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAE--------------------  430 (712)
Q Consensus       383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~--------------------  430 (712)
                      .        ..++..+|.++...|++++|+.+|++++........            .+.                    
T Consensus       384 ~--------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~  455 (1157)
T PRK11447        384 D--------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI  455 (1157)
T ss_pred             C--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence            3        347888999999999999999999999854211100            000                    


Q ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          431 ----VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       431 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                          ....+..+|.++...|++++|+.+|++++++        .|....++..+|.+|...|++++|+..|++++...  
T Consensus       456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--  525 (1157)
T PRK11447        456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--  525 (1157)
T ss_pred             HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence                0122345677888899999999999999998        77778899999999999999999999999998862  


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------------------------HHHHh
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL-------------------------------------KIYND  549 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~  549 (712)
                             |.....++.++.++...+++++|+..++++.                                     .+...
T Consensus       526 -------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~  598 (1157)
T PRK11447        526 -------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ  598 (1157)
T ss_pred             -------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence                   2234456666666667777777766665421                                     11111


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .    +....++..+|.++...|++++|+.+|++++..        .+....++..++.+|...|++++|+.+|++++..
T Consensus       599 ~----p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        599 Q----PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             C----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            1    112246678999999999999999999999985        1223578999999999999999999999998876


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCC---h---hHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005139          630 LEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTAN---P---DVDDEKRRLAELLKEAGRVRSRKAQSLETL  696 (712)
Q Consensus       630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~l~~~  696 (712)
                              .|+...++..+|.++..+|+       .+.+....   |   ..+..+..+|.++...|++++|+ ..|+.+
T Consensus       667 --------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~A  737 (1157)
T PRK11447        667 --------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL-ETYKDA  737 (1157)
T ss_pred             --------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence                    78888889999999999999       23332222   2   23456778899999999999999 999999


Q ss_pred             HH
Q 005139          697 LD  698 (712)
Q Consensus       697 l~  698 (712)
                      +.
T Consensus       738 l~  739 (1157)
T PRK11447        738 MV  739 (1157)
T ss_pred             Hh
Confidence            86

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.7e-26  Score=244.37  Aligned_cols=440  Identities=16%  Similarity=0.145  Sum_probs=345.6

Q ss_pred             ccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHH
Q 005139          205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA  284 (712)
Q Consensus       205 ~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A  284 (712)
                      .+.+.+..+-..++.++.++..++..++..|+ |..+..++..|+...      ...+..+..++++|.+|..+|+|++|
T Consensus       254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA  326 (1018)
T KOG2002|consen  254 KGVQLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKA  326 (1018)
T ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHH
Confidence            34456666777888999999999999999997 999999999988764      23366788899999999999999999


Q ss_pred             HHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC
Q 005139          285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL  364 (712)
Q Consensus       285 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  364 (712)
                      ..+|.+++...     +++   .+-.++.+|++|...|+++.|+.+|++++..        .|....++..||.+|...+
T Consensus       327 ~~yY~~s~k~~-----~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  327 FKYYMESLKAD-----NDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHHHHHHHccC-----CCC---ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhh
Confidence            99999999876     333   1224889999999999999999999999988        5888889999999998876


Q ss_pred             ----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005139          365 ----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (712)
Q Consensus       365 ----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (712)
                          ..+.|..++.+++...+.        ...+|..++.++....-+.. +.+|..|+.++...... --..+++++|.
T Consensus       391 ~~~~~~d~a~~~l~K~~~~~~~--------d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvas  460 (1018)
T KOG2002|consen  391 KKQEKRDKASNVLGKVLEQTPV--------DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVAS  460 (1018)
T ss_pred             hhhHHHHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHH
Confidence                567777777777766533        34588899988876655555 99999999887766554 55678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      .++..|++.+|..+|.+|+..+......+.  .......+++|.++...++++.|.+.|...+..         +|.+..
T Consensus       461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId  531 (1018)
T KOG2002|consen  461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYID  531 (1018)
T ss_pred             HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHH
Confidence            999999999999999999998654332222  223557899999999999999999999999988         788899


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (712)
                      ++..+|......++..+|..++..++.+....+       .++..+|.+|+...++..|.+-|...+......   .   
T Consensus       532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np-------~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~---~---  598 (1018)
T KOG2002|consen  532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNP-------NARSLLGNLHLKKSEWKPAKKKFETILKKTSTK---T---  598 (1018)
T ss_pred             HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHhhhhhcccccHHHHHHhhhccC---C---
Confidence            999999888889999999999999999866553       577889999999999999999888776642221   1   


Q ss_pred             HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCCh
Q 005139          599 FGVALNQMGLACVQR-----YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANP  666 (712)
Q Consensus       599 ~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p  666 (712)
                      .+.++..||.+|++.     .+.+++..++.+|++++.+++.. +|.++.+-+.+|.++...|+       +..+.+.-.
T Consensus       599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~  677 (1018)
T KOG2002|consen  599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS  677 (1018)
T ss_pred             chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence            235677788777643     23355555666666655554442 78888888888888888888       222323333


Q ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139          667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  701 (712)
Q Consensus       667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p  701 (712)
                      +..++|.+||.+|..+|+|..|+ +.|+.++...-
T Consensus       678 ~~~dv~lNlah~~~e~~qy~~AI-qmYe~~lkkf~  711 (1018)
T KOG2002|consen  678 DFEDVWLNLAHCYVEQGQYRLAI-QMYENCLKKFY  711 (1018)
T ss_pred             hCCceeeeHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            45567888888888888888888 88888877543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.96  E-value=6.3e-25  Score=228.32  Aligned_cols=329  Identities=20%  Similarity=0.242  Sum_probs=287.7

Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (712)
                      |+..+...-+.+.....+...+.+..+..+...|. ...+...++..|..+|+|+.|+..++.++++..+..|..++.+.
T Consensus       163 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va  241 (508)
T KOG1840|consen  163 LADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA  241 (508)
T ss_pred             HHhhccccccccccchhhHHHHHHHHHhcccCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH
Confidence            44444444444455555555555555555566665 45567779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCC
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA--NDQD  428 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~  428 (712)
                      ..+..+|.+|..++++.+|+.+|++|+.+.....+..++..+.++.+||.+|...|++++|..++++|+.+...  ...+
T Consensus       242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~  321 (508)
T KOG1840|consen  242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH  321 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988876  4567


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      +..+..+.+++.++..++++++|..+++++++++....+++++..+..+.+||.+|..+|+|++|.++|++|+.+.+...
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~  401 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL  401 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999998864


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                       +..+......+..||..|.+.+++.+|...|.+++.+.... |.. +.+...+.+||.+|..+|+++.|+++.++++..
T Consensus       402 -~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~-g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  402 -GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC-GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             -cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence             44566778899999999999999999999999999999555 554 588889999999999999999999999999988


Q ss_pred             HHHhCCCCChHHHHH
Q 005139          588 LRAIGERKSAFFGVA  602 (712)
Q Consensus       588 ~~~~~~~~~~~~~~~  602 (712)
                      .+...+..++.....
T Consensus       480 ~~~~~~~~~~~~~~~  494 (508)
T KOG1840|consen  480 REQRLGTASPTVEDE  494 (508)
T ss_pred             HHHcCCCCCcchhHH
Confidence            887766555544433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.3e-25  Score=236.00  Aligned_cols=432  Identities=14%  Similarity=0.168  Sum_probs=350.2

Q ss_pred             cccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhH
Q 005139          204 LHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE  283 (712)
Q Consensus       204 ~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~  283 (712)
                      ..|...|.-+...+|.+..+|+..|.+.+..++ |..|+.+|..++.+.+...   ++     ....+|.|++.+|+.+.
T Consensus       147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~---aD-----~rIgig~Cf~kl~~~~~  217 (1018)
T KOG2002|consen  147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK---AD-----VRIGIGHCFWKLGMSEK  217 (1018)
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC---CC-----ccchhhhHHHhccchhh
Confidence            445567777888999999999999999999997 9999999999998875432   22     23457999999999999


Q ss_pred             HHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (712)
Q Consensus       284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (712)
                      |+..|++++++.     |.    .+.++..||.+-....+   +..+...+.++...        ++..+.++..|+..|
T Consensus       218 a~~a~~ralqLd-----p~----~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~f  280 (1018)
T KOG2002|consen  218 ALLAFERALQLD-----PT----CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHF  280 (1018)
T ss_pred             HHHHHHHHHhcC-----hh----hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHH
Confidence            999999999997     32    44457777776655544   55666666666655        566778899999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005139          361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (712)
Q Consensus       361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (712)
                      +..|+|..+..+...++....     .....+..++++|..|..+|+|++|..+|.+++..     ++......++.+|+
T Consensus       281 yfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQ  350 (1018)
T KOG2002|consen  281 YFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQ  350 (1018)
T ss_pred             hhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhH
Confidence            999999999999999887652     23455778999999999999999999999999742     22224667889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG----KLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                      +|...|+++.|..+|++.+..        .|+...++..||.+|...+    ..+.|..++.++++.         .+..
T Consensus       351 m~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d  413 (1018)
T KOG2002|consen  351 MYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVD  413 (1018)
T ss_pred             HHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------cccc
Confidence            999999999999999999998        8888999999999999886    567777788887776         3456


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                      ..+|..++.+|....-+. ++.+|..|+.+.......  .-..+++++|..++..|++.+|...|..|+..+....+.+.
T Consensus       414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de  490 (1018)
T KOG2002|consen  414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE  490 (1018)
T ss_pred             HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence            889999999987765554 499999999888776333  33468999999999999999999999999998654322221


Q ss_pred             --hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChh
Q 005139          597 --AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPD  667 (712)
Q Consensus       597 --~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~  667 (712)
                        .......+++|.++...+++..|.+.|...+..        ||..+.++..|+......+.       ...+...+..
T Consensus       491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~  562 (1018)
T KOG2002|consen  491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS  562 (1018)
T ss_pred             cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence              223456899999999999999999999999998        99999999999855555555       4555567777


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139          668 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  700 (712)
Q Consensus       668 ~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~  700 (712)
                      ++.++..+|.++.+..+|..|. +-|+.+++..
T Consensus       563 np~arsl~G~~~l~k~~~~~a~-k~f~~i~~~~  594 (1018)
T KOG2002|consen  563 NPNARSLLGNLHLKKSEWKPAK-KKFETILKKT  594 (1018)
T ss_pred             CcHHHHHHHHHHHhhhhhcccc-cHHHHHHhhh
Confidence            8888999999999999999999 8888777643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.9e-26  Score=221.33  Aligned_cols=400  Identities=18%  Similarity=0.105  Sum_probs=311.5

Q ss_pred             cccccccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005139          184 DKGVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE  263 (712)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~  263 (712)
                      .+-...+..+++.+..+|+|++||..|..+....|+.+.++.+++.+|...|+ +++.++.+.+||++.         |+
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd-~~~Vied~TkALEl~---------P~  181 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD-WEKVIEDCTKALELN---------PD  181 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh-HHHHHHHHHHHhhcC---------cH
Confidence            33444566888889999999999999999999999999999999999999998 999999999999875         78


Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHH------------------HHhhchh-----hhhhc----ccchHHH-HHHHHH--
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVL------------------EQSIEIP-----VIEEG----QEHALAK-FAGHMQ--  313 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~------------------~~al~~~-----~~~~~----~~~~~~~-~~~~~~--  313 (712)
                      .+.+|+..+.++..+|++++|+.-.                  ++.|...     ....+    +.-|... +.+|+.  
T Consensus       182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF  261 (606)
T KOG0547|consen  182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF  261 (606)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence            8999999999999999999998533                  2222211     00011    1111110 111111  


Q ss_pred             ------------------H--HHHHHHcC---CHHHHHHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHHhCC
Q 005139          314 ------------------L--GDTYAMLG---QLENSLMCYTTGLEVQKQVLGET-----DPRVGETCRYLAEAHVQALQ  365 (712)
Q Consensus       314 ------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~  365 (712)
                                        +  +.-+...+   .|..|...+.+...........+     -...+.++...|..++..|+
T Consensus       262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~  341 (606)
T KOG0547|consen  262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD  341 (606)
T ss_pred             cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence                              1  11111112   45666666666554443322211     12457888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005139          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (712)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (712)
                      +-.|...++.++.+.+....        .|..+|.+|....+.++....|.+|.      ..+|..+.+|++.|++++.+
T Consensus       342 ~~~a~~d~~~~I~l~~~~~~--------lyI~~a~~y~d~~~~~~~~~~F~~A~------~ldp~n~dvYyHRgQm~flL  407 (606)
T KOG0547|consen  342 SLGAQEDFDAAIKLDPAFNS--------LYIKRAAAYADENQSEKMWKDFNKAE------DLDPENPDVYYHRGQMRFLL  407 (606)
T ss_pred             chhhhhhHHHHHhcCcccch--------HHHHHHHHHhhhhccHHHHHHHHHHH------hcCCCCCchhHhHHHHHHHH
Confidence            99999999999999876643        38899999999999999999999997      45777788999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHH
Q 005139          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS  525 (712)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  525 (712)
                      ++|++|+.-|++++.+        .|..+.++..++.+.+++++++++...|+++...+..         .+.++...|.
T Consensus       408 ~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~---------~~Evy~~fAe  470 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN---------CPEVYNLFAE  470 (606)
T ss_pred             HHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CchHHHHHHH
Confidence            9999999999999999        9999999999999999999999999999999999544         5778999999


Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 005139          526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN  604 (712)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  604 (712)
                      ++..++++++|++.|.+|+.+.+...+.....+ .+...|.+ +.-.+++..|+.++.+|+++        .+..-.++.
T Consensus       471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~-plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~  541 (606)
T KOG0547|consen  471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA-PLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYE  541 (606)
T ss_pred             HHhhHHhHHHHHHHHHHHHhhccccccccccch-hhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHH
Confidence            999999999999999999999876322222211 22222222 22348999999999999986        344568999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139          605 QMGLACVQRYSINEAVELFEEARSILEQE  633 (712)
Q Consensus       605 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~  633 (712)
                      .||.+..++|+.++|+++|+++..+.+..
T Consensus       542 tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  542 TLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999986653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=1.4e-24  Score=241.94  Aligned_cols=363  Identities=14%  Similarity=0.030  Sum_probs=287.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ....-+...+..+...|+ +++|+.+++.++...         |....+++.+|.+....|++++|+..|++++.+.   
T Consensus        40 ~~~~~~~~~~~~~~~~g~-~~~A~~l~~~~l~~~---------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---  106 (656)
T PRK15174         40 GNEQNIILFAIACLRKDE-TDVGLTLLSDRVLTA---------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---  106 (656)
T ss_pred             ccccCHHHHHHHHHhcCC-cchhHHHhHHHHHhC---------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---
Confidence            334455667778888997 999999999988764         4457788889999999999999999999999886   


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                        |+++.    ++..+|.++...|++++|+..|++++.+        .|....++..++.++...|++++|+..+++++.
T Consensus       107 --P~~~~----a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174        107 --VCQPE----DVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             --CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence              55544    4889999999999999999999999988        677888899999999999999999999998776


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      ..+...        ..+..+ ..+...|++++|+..+++++...     ..........++.++...|++++|+..|+++
T Consensus       173 ~~P~~~--------~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-----~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a  238 (656)
T PRK15174        173 EVPPRG--------DMIATC-LSFLNKSRLPEDHDLARALLPFF-----ALERQESAGLAVDTLCAVGKYQEAIQTGESA  238 (656)
T ss_pred             hCCCCH--------HHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            654321        133333 34788999999999998876421     1122233456688889999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE----SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (712)
                      +..        .|....++..+|.++...|++++    |+.+|++++.+         .|....++..+|.++...|+++
T Consensus       239 l~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        239 LAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---------NSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHH
Confidence            987        67778899999999999999986    89999999988         3445788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005139          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (712)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g  614 (712)
                      +|+.++++++.+.+..       ..++..+|.++...|++++|+..|++++..        .+.....+..+|.++...|
T Consensus       302 eA~~~l~~al~l~P~~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G  366 (656)
T PRK15174        302 KAIPLLQQSLATHPDL-------PYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAG  366 (656)
T ss_pred             HHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCC
Confidence            9999999999875543       356778999999999999999999998874        1222345666788999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      ++++|+..|++++++.....   .+....+...+...+...+.
T Consensus       367 ~~deA~~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~  406 (656)
T PRK15174        367 KTSEAESVFEHYIQARASHL---PQSFEEGLLALDGQISAVNL  406 (656)
T ss_pred             CHHHHHHHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCC
Confidence            99999999999998833322   12233455666666665544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=3.8e-24  Score=238.57  Aligned_cols=332  Identities=13%  Similarity=0.068  Sum_probs=278.8

Q ss_pred             CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005139          194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA  273 (712)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~  273 (712)
                      +.....+|.+.+|...+......+|....++..++......|+ +++|+..+++++.+.         |....++..+|.
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~-~~~A~~~l~~~l~~~---------P~~~~a~~~la~  118 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ-PDAVLQVVNKLLAVN---------VCQPEDVLLVAS  118 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC-HHHHHHHHHHHHHhC---------CCChHHHHHHHH
Confidence            3446777888888888888889999999999999999999997 999999999999864         445678899999


Q ss_pred             HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (712)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (712)
                      ++...|++++|+..|++++.+.     +.++.    ++..+|.++...|++++|+..+++++..        .|....++
T Consensus       119 ~l~~~g~~~~Ai~~l~~Al~l~-----P~~~~----a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~P~~~~a~  181 (656)
T PRK15174        119 VLLKSKQYATVADLAEQAWLAF-----SGNSQ----IFALHLRTLVLMDKELQAISLARTQAQE--------VPPRGDMI  181 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-----CCcHH----HHHHHHHHHHHCCChHHHHHHHHHHHHh--------CCCCHHHH
Confidence            9999999999999999999886     44433    4889999999999999999999988776        34444455


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (712)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (712)
                      ..++ .+...|++++|+..+++++...+...       ......++.++...|++++|+..|.+++.      ..|....
T Consensus       182 ~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~-------~~~~~~l~~~l~~~g~~~eA~~~~~~al~------~~p~~~~  247 (656)
T PRK15174        182 ATCL-SFLNKSRLPEDHDLARALLPFFALER-------QESAGLAVDTLCAVGKYQEAIQTGESALA------RGLDGAA  247 (656)
T ss_pred             HHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCHH
Confidence            5554 47889999999999999877643111       11345668889999999999999999984      3455678


Q ss_pred             HHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          434 VDCSIGDTYLSLSRYDE----AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      ++..+|.++...|++++    |+..|++++.+        .|....++..+|.++...|++++|+.++++++.+      
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------  313 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT------  313 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            88999999999999996    89999999998        7888899999999999999999999999999998      


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                         .|....++..+|.++...|++++|+..|++++...+..       ...+..+|.++...|++++|+..|+++++...
T Consensus       314 ---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-------~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        314 ---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-------SKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence               34456778899999999999999999999998864432       23455678899999999999999999998743


Q ss_pred             H
Q 005139          590 A  590 (712)
Q Consensus       590 ~  590 (712)
                      .
T Consensus       384 ~  384 (656)
T PRK15174        384 S  384 (656)
T ss_pred             h
Confidence            3

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.5e-23  Score=206.05  Aligned_cols=426  Identities=14%  Similarity=0.112  Sum_probs=301.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+..+-..|+.++..|+ |++||.+|.+|+.+.         |+-+..|.+++.||...|+|++.++...+++++.   
T Consensus       113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---  179 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---  179 (606)
T ss_pred             HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            566788899999999997 999999999999876         3336678999999999999999999999999997   


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHhCCH------HHHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-DPRVGETCRYLAEAHVQALQF------SEAQK  371 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~------~~A~~  371 (712)
                        |+    ...++++.+..+..+|++++|+.-..- +-+.....+.. .|..-+.+...|..-...+--      --+..
T Consensus       180 --P~----Y~KAl~RRA~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~  252 (606)
T KOG0547|consen  180 --PD----YVKALLRRASAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT  252 (606)
T ss_pred             --cH----HHHHHHHHHHHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH
Confidence              33    344699999999999999999865432 22211110000 011222222222211110000      00001


Q ss_pred             HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHH
Q 005139          372 FCQMALDIHKDNGSP---ASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIANDQ-------DAEVASVDCSI  438 (712)
Q Consensus       372 ~~~~al~~~~~~~~~---~~~~~a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~l  438 (712)
                      .......++.....+   .....+.....-+.-+...+   .|..|...+.+..........       -...+.++...
T Consensus       253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~  332 (606)
T KOG0547|consen  253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR  332 (606)
T ss_pred             HHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence            111111111110000   00000101111111112222   577777777666433322111       13457888899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      |..++..|++-.|...|..++.+        ++.....|+.+|.+|....+.++-...|.+|..+         +|..+.
T Consensus       333 gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~d  395 (606)
T KOG0547|consen  333 GTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPD  395 (606)
T ss_pred             hhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCc
Confidence            99999999999999999999998        7777777999999999999999999999999999         455677


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (712)
                      +|+..|.+++-++++++|+.-|++++.+.++.       +..+..++.+.++++++++++..|+.+...+        |.
T Consensus       396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~  460 (606)
T KOG0547|consen  396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PN  460 (606)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            89999999999999999999999999998766       4678899999999999999999999998864        34


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--------hhhhCCCChhHHH
Q 005139          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--------EEKLGTANPDVDD  670 (712)
Q Consensus       599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--------~~~l~~~~p~~~~  670 (712)
                      ...++...|.++..+++|++|++.|..|+++-....+- + -.+..+.+-|.+..+...        ..+....+|....
T Consensus       461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~-v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~  538 (606)
T KOG0547|consen  461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-I-VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ  538 (606)
T ss_pred             CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-c-ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH
Confidence            55789999999999999999999999999983221100 0 033344444444333222        5556688999999


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005139          671 EKRRLAELLKEAGRVRSRKAQSLETLLDA  699 (712)
Q Consensus       671 ~~~~la~~~~~~g~~~~A~~~~l~~~l~~  699 (712)
                      ++..||.+..++|+.++|+ +.|++.+..
T Consensus       539 A~~tlaq~~lQ~~~i~eAi-elFEksa~l  566 (606)
T KOG0547|consen  539 AYETLAQFELQRGKIDEAI-ELFEKSAQL  566 (606)
T ss_pred             HHHHHHHHHHHHhhHHHHH-HHHHHHHHH
Confidence            9999999999999999999 999988754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.94  E-value=1.3e-23  Score=239.25  Aligned_cols=425  Identities=12%  Similarity=0.030  Sum_probs=322.2

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139          214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (712)
Q Consensus       214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~  293 (712)
                      ...+|.....+.....+....|+ +++|+..|.++....         +..+.++..+|.++...|++++|+.+|+++++
T Consensus         8 ~~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~---------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~   77 (765)
T PRK10049          8 ALKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHM---------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS   77 (765)
T ss_pred             hhccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34456666677777788888987 999998888887521         33366788899999999999999999999998


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC  373 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (712)
                      +.     |.++.    ++..++.++...|++++|+..+++++..        .|.... +..+|.++...|++++|+..+
T Consensus        78 ~~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l  139 (765)
T PRK10049         78 LE-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAM  139 (765)
T ss_pred             hC-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence            86     55443    3779999999999999999999999988        567677 999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH-----HHHHHHHHHHHH-----
Q 005139          374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV-----ASVDCSIGDTYL-----  443 (712)
Q Consensus       374 ~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~la~~~~-----  443 (712)
                      ++++++.+...        .++..++.++...|..++|+..++++..       .|..     ......+..++.     
T Consensus       140 ~~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        140 TQALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhcccccC
Confidence            99999876542        3567789999999999999998876542       1111     111222222222     


Q ss_pred             HcCCH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005139          444 SLSRY---DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (712)
Q Consensus       444 ~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (712)
                      ..+++   ++|+..++.++....... ...+....+.......+...|++++|+..|+++++..      ...|..+.  
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~------~~~P~~a~--  275 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG------QIIPPWAQ--  275 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC------CCCCHHHH--
Confidence            22334   778888888876643221 1123344444442334467799999999999987762      12233333  


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------CCC
Q 005139          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI------GER  594 (712)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~  594 (712)
                      ..+|.+|...|++++|+.+|++++...+..   ..........++.++...|++++|+.+++++.......      ...
T Consensus       276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~  352 (765)
T PRK10049        276 RWVASAYLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS  352 (765)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence            336899999999999999999988643221   11112345667778899999999999999988752110      000


Q ss_pred             C-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCCh
Q 005139          595 K-SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANP  666 (712)
Q Consensus       595 ~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p  666 (712)
                      . ......++..+|.++...|++++|+..+++++..        .|+...++..+|.++...|+       .+.....+|
T Consensus       353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            1 1123457788999999999999999999999998        89999999999999999999       555667789


Q ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ++...+..+|.++...|++++|. ..++.+++..|+
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd  459 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQ  459 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence            99999999999999999999999 999999999997

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.92  E-value=6.9e-22  Score=224.87  Aligned_cols=452  Identities=12%  Similarity=0.013  Sum_probs=327.3

Q ss_pred             cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l  271 (712)
                      ..+......|++.+|++.+..+...+|....+++.++..|+..|+ +++|+.+++++++..         |.....+..+
T Consensus        49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ld---------P~n~~~~~~L  118 (987)
T PRK09782         49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRH---------PGDARLERSL  118 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC---------cccHHHHHHH
Confidence            445556667999999999999999999999999999999999997 999999999999753         3334444445


Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH-------------------------------HHHHHHHHHHHHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-------------------------------KFAGHMQLGDTYAM  320 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~lg~~~~~  320 (712)
                      +.+    +++++|+..|++++...+.....-....                               .......++.+|..
T Consensus       119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~  194 (987)
T PRK09782        119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY  194 (987)
T ss_pred             HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence            554    8899999999988877532111100000                               01124445889999


Q ss_pred             cCCHHHHHHHHHHHHHHH--------------HHH---------hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          321 LGQLENSLMCYTTGLEVQ--------------KQV---------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (712)
Q Consensus       321 ~g~~~~A~~~~~~al~~~--------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (712)
                      +|++++|+..+.++++..              ...         ..+.-.....++..++..|...|+.++|...+++.-
T Consensus       195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~  274 (987)
T PRK09782        195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK  274 (987)
T ss_pred             HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            999999999988876541              000         000001223445567788888888888887765532


Q ss_pred             HHHHhcCCC------------C---------------------------------------------C------------
Q 005139          378 DIHKDNGSP------------A---------------------------------------------S------------  388 (712)
Q Consensus       378 ~~~~~~~~~------------~---------------------------------------------~------------  388 (712)
                      ...+.....            .                                             .            
T Consensus       275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  354 (987)
T PRK09782        275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA  354 (987)
T ss_pred             ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence            221110000            0                                             0            


Q ss_pred             ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HH-------HhC--------
Q 005139          389 ------------------LEEAADRRLMGLICETKGDHEAALEHLVLASM----------TM-------IAN--------  425 (712)
Q Consensus       389 ------------------~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~----------~~-------~~~--------  425 (712)
                                        +.....+..++......|++++|...|+++..          +.       ...        
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence                              00112233345566677888888888877643          11       000        


Q ss_pred             ----------------------------------CCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          426 ----------------------------------DQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       426 ----------------------------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                                                        ...|.  ...+++++|.++.. +++.+|+..+.+++..        
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------  505 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------  505 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence                                              01122  45667888888887 7888899989888877        


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .|... ....+|.++...|++++|+..|++++...         +. ...+..+|.++...|++++|+.+|++++...+.
T Consensus       506 ~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~---------p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~  574 (987)
T PRK09782        506 QPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD---------MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG  574 (987)
T ss_pred             CCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC---------CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence            45432 36667777789999999999999875441         11 233678899999999999999999999876432


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .       ...+..++..+...|++++|+..|++++++.        +. ..++..+|.++.+.|++++|+.+|++++.+
T Consensus       575 ~-------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l  638 (987)
T PRK09782        575 D-------NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL  638 (987)
T ss_pred             c-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2       2344456666667799999999999999862        22 478899999999999999999999999999


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          630 LEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                              +|+...++.++|.++...|+       .+.....+|+++.+++++|.++..+|++++|. ..|+++++..|+
T Consensus       639 --------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~-~~l~~Al~l~P~  709 (987)
T PRK09782        639 --------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ-HYARLVIDDIDN  709 (987)
T ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence                    99999999999999999999       44445778999999999999999999999999 999999999997

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.92  E-value=6.5e-22  Score=225.50  Aligned_cols=418  Identities=12%  Similarity=-0.016  Sum_probs=311.0

Q ss_pred             CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005139          194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA  273 (712)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~  273 (712)
                      .....-.|++.+|++.+......+|..+..+..+|..+...|+ +++|+.+|++++.+.         |....++..+|.
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~   91 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE---------PQNDDYQRGLIL   91 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Confidence            3445566777778877777777788999999999999999997 999999999999864         333556778999


Q ss_pred             HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (712)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (712)
                      ++...|++++|+..+++++...     ++++    . +..+|.++...|++++|+..+++++++        .|....++
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~  153 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYP  153 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            9999999999999999999875     4432    3 778899999999999999999999998        67788888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHHHHhC
Q 005139          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDH---EAALEHLVLASMTMIAN  425 (712)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~  425 (712)
                      ..++.++...+..++|+..++++.. .+....   .........+..++.     ..+++   ++|+..++.++......
T Consensus       154 ~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~  229 (765)
T PRK10049        154 TEYVQALRNNRLSAPALGAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN  229 (765)
T ss_pred             HHHHHHHHHCCChHHHHHHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence            8899999999999999999886654 211100   000001112222222     22345   77888888877554322


Q ss_pred             C-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          426 D-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       426 ~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      . ..+....+.......+...|++++|+..|++++..     ++..|..+..  .+|.+|..+|++++|+.+|++++...
T Consensus       230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~  302 (765)
T PRK10049        230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHP  302 (765)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence            2 22334444444233446789999999999998776     1112444433  36889999999999999999988642


Q ss_pred             hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC-------CC-CCcHHHHHHHHHHHHHHcCCHHH
Q 005139          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP-------GQ-QSTVAGIEAQMGVMYYMLGNYSD  576 (712)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~  576 (712)
                      ..     ...........++.++...|++++|+.+++++....+...       .. ......++..+|.++...|++++
T Consensus       303 p~-----~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e  377 (765)
T PRK10049        303 ET-----IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ  377 (765)
T ss_pred             CC-----CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence            11     1111134566778888999999999999999987754210       11 11234567789999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      |+..+++++...        |....++..+|.++...|++++|+..+++++.+        +|+...++..+|.++...|
T Consensus       378 A~~~l~~al~~~--------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~  441 (765)
T PRK10049        378 AEMRARELAYNA--------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQ  441 (765)
T ss_pred             HHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhC
Confidence            999999998862        223579999999999999999999999999999        9999999999999999999


Q ss_pred             c-------hhhhCCCChhHHHH
Q 005139          657 R-------EEKLGTANPDVDDE  671 (712)
Q Consensus       657 ~-------~~~l~~~~p~~~~~  671 (712)
                      +       .+.+....|+++.+
T Consensus       442 ~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        442 EWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHH
Confidence            8       34444556666543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=3e-22  Score=192.61  Aligned_cols=329  Identities=16%  Similarity=0.155  Sum_probs=279.4

Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (712)
                      -|.-+++.|++...+.+|+.|++.-     .++......+|..||.+|+.+++|++|+++...-+.+.+.+ + +....+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-g-dklGEA   95 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-G-DKLGEA   95 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-c-chhccc
Confidence            4788899999999999999999874     44444455679999999999999999999988877776554 2 223456


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------------HHH
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------------HEA  410 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~--------------------~~~  410 (712)
                      .+..+||.++...|.|++|+.++.+-+.+.++.++  ....+.+++++|.+|...|+                    ++.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD--rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD--RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhH--HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            67789999999999999999999999999998874  46678899999999998774                    566


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 005139          411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL  490 (712)
Q Consensus       411 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  490 (712)
                      |.++|..-+.+....++......++.++|..|+.+|+|+.|+...+.-+.+.++.+.  ......++.+||.++...|++
T Consensus       174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD--rAaeRRA~sNlgN~hiflg~f  251 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD--RAAERRAHSNLGNCHIFLGNF  251 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh--HHHHHHhhcccchhhhhhccc
Confidence            778888888888888888888999999999999999999999999999999988763  556678999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005139          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (712)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (712)
                      +.|+++|..++.+..+..   +....+...+.||..|.-..++++|+.|+.+-+.+.... ++......+++.||..|-.
T Consensus       252 e~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  252 ELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             HhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHh
Confidence            999999999999887742   344568889999999999999999999999999998887 6666667889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCH
Q 005139          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (712)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  616 (712)
                      .|..++|+.+.++.+++..++++.....  .+..+|...-...|..
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~sgel--Tar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTSGEL--TARDNLSDLILELGQE  371 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcchhh--hhhhhhHHHHHHhCCC
Confidence            9999999999999999999988775443  4556666666666653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.90  E-value=9.1e-22  Score=189.37  Aligned_cols=329  Identities=15%  Similarity=0.135  Sum_probs=278.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005139          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA  392 (712)
Q Consensus       313 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a  392 (712)
                      .-|.-+++.|++...+.+|+.|++.-..    +-.....+|..||.+|+.+++|++|+++...-+.+.+..++  ....+
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd--klGEA   95 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD--KLGEA   95 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc--hhccc
Confidence            3466778899999999999999998322    12445678899999999999999999998887777766553  34456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------HHHHH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR--------------------YDEAG  452 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~  452 (712)
                      .+--+||.++-..|.|++|+.+..+-+.+.+..++......+++++|.+|...|+                    ++.|.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999999999999998875                    35677


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (712)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (712)
                      ++|..-+++.+..+  +......++-+||..|+.+|+|+.|+...+.-+.+.++.   .+....-.++.+||.++.-.|+
T Consensus       176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---GDrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---GDRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---hhHHHHHHhhcccchhhhhhcc
Confidence            77777777777665  245567899999999999999999999999999998874   2344456789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ  612 (712)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~  612 (712)
                      ++.|+++|++++.+..+. +.....+...+.||..|.-..++++|+.|+++-+.+++++++....  ..+++.||..+-.
T Consensus       251 fe~A~ehYK~tl~LAiel-g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe--~RacwSLgna~~a  327 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIEL-GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE--LRACWSLGNAFNA  327 (639)
T ss_pred             cHhHHHHHHHHHHHHHHh-cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHh
Confidence            999999999999999887 7777778889999999999999999999999999999998876543  5889999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       613 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .|..++|+.+.++.+++..++.++.  ....+..+|......+|.
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQ  370 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCC
Confidence            9999999999999999988775432  245567788888888887

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1.9e-20  Score=199.19  Aligned_cols=307  Identities=18%  Similarity=0.179  Sum_probs=245.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (712)
                      ..+..|..+...|+ +++|+..|.+++...         |....++..+|.++...|++++|+.++++++...     ..
T Consensus        37 ~~y~~g~~~~~~~~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~  101 (389)
T PRK11788         37 RDYFKGLNFLLNEQ-PDKAIDLFIEMLKVD---------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-----DL  101 (389)
T ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-----CC
Confidence            44566888888886 999999999999753         4456788999999999999999999999988742     11


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                      .......++..+|.+|...|++++|+.+|.++++.        .|....++..++.++...|++++|+..+++++...+.
T Consensus       102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (389)
T PRK11788        102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD  173 (389)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence            22223456899999999999999999999999876        4566788999999999999999999999998876533


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (712)
Q Consensus       383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (712)
                      .   ........+..+|.++...|++++|+.+|++++..      .+....++..+|.++...|++++|+.++++++.. 
T Consensus       174 ~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-  243 (389)
T PRK11788        174 S---LRVEIAHFYCELAQQALARGDLDAARALLKKALAA------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-  243 (389)
T ss_pred             c---chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            2   12233446778999999999999999999999853      3445667889999999999999999999999987 


Q ss_pred             HHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          463 KTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       463 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                             .|. ...++..++.+|...|++++|+.++++++...         |.. ..+..++.++...|++++|+.+++
T Consensus       244 -------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---------p~~-~~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        244 -------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---------PGA-DLLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             -------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCc-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence                   443 35678889999999999999999999998872         112 234789999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 005139          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISK  587 (712)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~  587 (712)
                      +++...++.       . .+..+...+..   .|+..+|+..+++.++.
T Consensus       307 ~~l~~~P~~-------~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        307 EQLRRHPSL-------R-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHhCcCH-------H-HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            999875433       1 22223333332   56899999999988864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=8.7e-22  Score=202.05  Aligned_cols=302  Identities=17%  Similarity=0.193  Sum_probs=244.4

Q ss_pred             HHHHHHHHHHHHHc--CCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005139          265 VMCLHVIAAIYCSL--GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (712)
Q Consensus       265 ~~~l~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (712)
                      ...+..+|..|...  -+..+|+..|++ +-.        +.....+++..+|..|+.+++|++|..+|+.+-++     
T Consensus       317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~--------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~-----  382 (638)
T KOG1126|consen  317 MELLRGLGEGYRSLSQYNCREALNLFEK-LPS--------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI-----  382 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            33445555555543  456889999988 321        11112356899999999999999999999998877     


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                         .|......-....+++.+.+--+---+.+..++..+..        ..+|..+|.+|..+++++.|+++|++|+   
T Consensus       383 ---~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s--------PesWca~GNcfSLQkdh~~Aik~f~RAi---  448 (638)
T KOG1126|consen  383 ---EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS--------PESWCALGNCFSLQKDHDTAIKCFKRAI---  448 (638)
T ss_pred             ---ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC--------cHHHHHhcchhhhhhHHHHHHHHHHHhh---
Confidence               45544444445555555544333333333344433322        2478999999999999999999999998   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                         ..+|..+.+|..+|.-+....++|.|..+|+.|+.+        .|....+|+.||.+|.++++++.|+-+|++|+.
T Consensus       449 ---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~  517 (638)
T KOG1126|consen  449 ---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE  517 (638)
T ss_pred             ---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence               567888999999999999999999999999999998        889999999999999999999999999999999


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      +         .|........+|.++.+.|+.++|+.+|++|+.+.+..+       ...+..|.+++..+++++|+..++
T Consensus       518 I---------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-------l~~~~~~~il~~~~~~~eal~~LE  581 (638)
T KOG1126|consen  518 I---------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-------LCKYHRASILFSLGRYVEALQELE  581 (638)
T ss_pred             C---------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHhhcchHHHHHHHH
Confidence            9         566678889999999999999999999999999876652       466788999999999999999999


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +..++.        +..+.++..+|.+|.+.|+.+.|+..|.-|.++
T Consensus       582 eLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  582 ELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            987763        344689999999999999999999999999998

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=9.7e-22  Score=191.12  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (712)
                      -.++++++..|-... .+.+|+..|+-.++       ..--|.....-.++|.++++..+|.+|+.+|+.++...+.+  
T Consensus       201 fsvl~nlaqqy~~nd-m~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi--  270 (840)
T KOG2003|consen  201 FSVLFNLAQQYEAND-MTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI--  270 (840)
T ss_pred             HHHHHHHHHHhhhhH-HHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc--
Confidence            456788888776664 36666666665443       22224445556778999999999999999999999875432  


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (712)
                        ....++.++.++|..+.+.|+|+.|+..|+.+++.        .|.+. +-++|..|++..|+-++-.+.|++.+.+
T Consensus       271 --nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  271 --NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             --chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence              22346778999999999999999999999999988        46554 4456778888899988888888888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.89  E-value=9e-21  Score=215.85  Aligned_cols=379  Identities=13%  Similarity=0.042  Sum_probs=280.9

Q ss_pred             ccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC
Q 005139          201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ  280 (712)
Q Consensus       201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~  280 (712)
                      +++.++.+.........|.....+...+...+..|+ +++|..+++++...- .  ++.  . .......++.+|...+.
T Consensus       356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~-~~~a~~~~~~~~~~~-~--~~~--~-~~~l~~~l~~~~~~~~~  428 (987)
T PRK09782        356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ-SREAADLLLQRYPFQ-G--DAR--L-SQTLMARLASLLESHPY  428 (987)
T ss_pred             CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHhcCCC-c--ccc--c-CHHHHHHHHHHHHhCCc
Confidence            444444433333445558888999999999999996 999999999987631 0  011  1 12233366666666655


Q ss_pred             ---HhHHH----------------------HHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          281 ---YNEAI----------------------PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL  335 (712)
Q Consensus       281 ---~~~A~----------------------~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  335 (712)
                         ..+++                      ..+..+......  .+.+  ....+++.+|.++.. +++.+|+..|.+++
T Consensus       429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~p~~--~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al  503 (987)
T PRK09782        429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD--MSPS--YDAAAWNRLAKCYRD-TLPGVALYAWLQAE  503 (987)
T ss_pred             ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc--CCCC--CCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence               33332                      222222222210  0110  123468999999987 89999999999998


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          336 EVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL  415 (712)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~  415 (712)
                      ..        .|.. .....+|.++...|++++|+..|++++...+.     .    ..+..+|.++...|++++|+.+|
T Consensus       504 ~~--------~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-----~----~a~~~la~all~~Gd~~eA~~~l  565 (987)
T PRK09782        504 QR--------QPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMS-----N----EDLLAAANTAQAAGNGAARDRWL  565 (987)
T ss_pred             Hh--------CCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-----c----HHHHHHHHHHHHCCCHHHHHHHH
Confidence            77        3432 23666777778999999999999987543211     1    14678899999999999999999


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS  495 (712)
Q Consensus       416 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  495 (712)
                      ++++..      .+.....+..++......|++++|+..|++++++        .|. ..++.++|.++.+.|++++|+.
T Consensus       566 ~qAL~l------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~  630 (987)
T PRK09782        566 QQAEQR------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVS  630 (987)
T ss_pred             HHHHhc------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence            999743      3444455556666667779999999999999998        665 7889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 005139          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS  575 (712)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  575 (712)
                      +|++++.+         .|....++.++|.++...|++++|+..|++++++.+..       ..++.++|.++...|+++
T Consensus       631 ~l~~AL~l---------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-------~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        631 DLRAALEL---------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-------PALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHH
Confidence            99999999         44557789999999999999999999999999986655       468899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                      +|+.+|++++++.        +..+.+....|.+.....++..|.+.+.++..+        .|... +....+.++...
T Consensus       695 eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~  757 (987)
T PRK09782        695 ATQHYARLVIDDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTAN  757 (987)
T ss_pred             HHHHHHHHHHhcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhc
Confidence            9999999999862        344567778888888888888888888888877        66655 666777777766


Q ss_pred             cc
Q 005139          656 GR  657 (712)
Q Consensus       656 g~  657 (712)
                      ++
T Consensus       758 ~~  759 (987)
T PRK09782        758 NN  759 (987)
T ss_pred             cc
Confidence            66

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4e-21  Score=197.19  Aligned_cols=306  Identities=17%  Similarity=0.160  Sum_probs=241.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      .....+..+|..+.....      ..+++|+.++++.  ...++...+++..+|..|+.+++|++|..+|+.+-++.+- 
T Consensus       315 ~l~~llr~~~~~~~~~s~------y~~~~A~~~~~kl--p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-  385 (638)
T KOG1126|consen  315 ELMELLRGLGEGYRSLSQ------YNCREALNLFEKL--PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-  385 (638)
T ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhh--HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence            445566666666544432      2345555555553  2333556789999999999999999999999998877421 


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                              .+...-....+++++.+--+--.+.+..+..        +|....+|..+|.||..+++++.|+++|++|+.
T Consensus       386 --------rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ  449 (638)
T KOG1126|consen  386 --------RVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ  449 (638)
T ss_pred             --------cccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc
Confidence                    1111222233334433322211222222222        678889999999999999999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      +.+..        +.+|..+|.-+....++|.|..+|+.|+      ..++....+|+.+|.+|.++++++.|+-+|++|
T Consensus       450 ldp~f--------aYayTLlGhE~~~~ee~d~a~~~fr~Al------~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA  515 (638)
T KOG1126|consen  450 LDPRF--------AYAYTLLGHESIATEEFDKAMKSFRKAL------GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA  515 (638)
T ss_pred             cCCcc--------chhhhhcCChhhhhHHHHhHHHHHHhhh------cCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence            87644        3478899999999999999999999998      567888899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      +++        +|....+...+|.++.+.|+.++|+.+|++|+.+-         +......+..|.++...+++++|+.
T Consensus       516 ~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---------~kn~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  516 VEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---------PKNPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             hcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---------CCCchhHHHHHHHHHhhcchHHHHH
Confidence            999        89999999999999999999999999999999983         3345668899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+++..++.++.       +.+++.+|.+|.+.|+.+.|+..|.-|.++
T Consensus       579 ~LEeLk~~vP~e-------s~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  579 ELEELKELVPQE-------SSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHhCcch-------HHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            999998887765       468899999999999999999999888775

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=7.8e-19  Score=196.12  Aligned_cols=430  Identities=12%  Similarity=-0.005  Sum_probs=297.7

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      .....|..+...+..+...++.|+ +..|+..|+++++..         |........++.++...|++++|+.++++++
T Consensus        26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~eka~   95 (822)
T PRK14574         26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ   95 (822)
T ss_pred             ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence            444556666677788888888886 888888888887654         2221112256667777788888888888887


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF  372 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (712)
                      .       +....  ...+..+|.+|...|++++|+..|+++++.        +|....++..++.++...++.++|+..
T Consensus        96 ~-------p~n~~--~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~  158 (822)
T PRK14574         96 S-------SMNIS--SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQ  158 (822)
T ss_pred             c-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence            2       21111  123455577888888888888888888877        566666777778888888888888888


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005139          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (712)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (712)
                      +++++...+...         .+..++.++...++..+|+..+++++..      .|....++..+..++...|-...|+
T Consensus       159 l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        159 ATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             HHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            888776654421         2334455555566666688888777632      2222233333333333333222222


Q ss_pred             H-----------------------------------------HHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHH
Q 005139          453 F-----------------------------------------AYQKALTAFKTNKG------ENHPAVASVFVRLADMYN  485 (712)
Q Consensus       453 ~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~~~~  485 (712)
                      +                                         ...+++.....+..      +.++....+....-.++.
T Consensus       224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~  303 (822)
T PRK14574        224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL  303 (822)
T ss_pred             HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence            2                                         23333333333221      123344556666677788


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 005139          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (712)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (712)
                      ..|++.+++..|+.....      +...|.  .+...+|..|+..+++++|+.+|..++.-.+........ ......|-
T Consensus       304 ~r~r~~~vi~~y~~l~~~------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L~  374 (822)
T PRK14574        304 VRHQTADLIKEYEAMEAE------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDLY  374 (822)
T ss_pred             HhhhHHHHHHHHHHhhhc------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHHH
Confidence            899999999999876654      222333  367789999999999999999999997654322111111 12235677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHH-H---hC---CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          566 VMYYMLGNYSDSYDSFKNAISKLR-A---IG---ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (712)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~-~---~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (712)
                      .+|...++|++|..++++...... .   .+   ....+....+...++.++.-.|++.+|.+.+++.+..        .
T Consensus       375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------a  446 (822)
T PRK14574        375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------A  446 (822)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            889999999999999999877322 0   11   1233455688889999999999999999999999988        8


Q ss_pred             hhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          639 PDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       639 p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      |.+..++..+|.++...|.       .+.....+|+...+...++.++..+|++++|. .....+++.+|+
T Consensus       447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe  516 (822)
T PRK14574        447 PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME-LLTDDVISRSPE  516 (822)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCC
Confidence            9999999999999999999       45555679999999999999999999999999 999999999998

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=7.7e-20  Score=194.50  Aligned_cols=309  Identities=14%  Similarity=0.133  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (712)
                      ..+.+|..+...|++++|+..|+++++..     ++.    ..++..+|.++...|++++|+..+++++...    ....
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~  103 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-----PET----VELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTR  103 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcC-----ccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCH
Confidence            44557899999999999999999999875     333    3458999999999999999999999887641    0111


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      .....++..+|.+|...|++++|+.+|.++++..+        ....++..++.++...|++++|+..+.+++..... .
T Consensus       104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~  174 (389)
T PRK11788        104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD--------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-S  174 (389)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-c
Confidence            23446789999999999999999999999987522        12347889999999999999999999988753211 1


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ........+..+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++...  
T Consensus       175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--  244 (389)
T PRK11788        175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--  244 (389)
T ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence            11234556778999999999999999999999987        56667889999999999999999999999999872  


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                            +.....++..++.+|...|++++|+..+++++...++.        ..+..++.++...|++++|+.++++++.
T Consensus       245 ------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--------~~~~~la~~~~~~g~~~~A~~~l~~~l~  310 (389)
T PRK11788        245 ------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--------DLLLALAQLLEEQEGPEAAQALLREQLR  310 (389)
T ss_pred             ------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                  12235667889999999999999999999998874332        2347899999999999999999999988


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Q 005139          587 KLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSI  629 (712)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~  629 (712)
                      ..        +........++..+..  .|+..+|+..+++.++.
T Consensus       311 ~~--------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        311 RH--------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             hC--------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            62        1222222233333322  45889999999988763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=9e-21  Score=184.44  Aligned_cols=403  Identities=16%  Similarity=0.170  Sum_probs=302.0

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139          214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (712)
Q Consensus       214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~  293 (712)
                      ....|....+-.++|.++++..+ |.+|+.+|+-||.....+    ........+.++|..+.+.|+|+.|+..|+.+++
T Consensus       230 nkmf~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsi----nk~~rikil~nigvtfiq~gqy~dainsfdh~m~  304 (840)
T KOG2003|consen  230 NKMFPNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSI----NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCME  304 (840)
T ss_pred             ccccCCCceeeeeecceeeehhh-HHHHHHHHHHHHhhcccc----chhhHHHHHhhcCeeEEecccchhhHhhHHHHHH
Confidence            44567777778899999999975 999999999999876332    2234577899999999999999999999999987


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------hCCCChhH------------------
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV------LGETDPRV------------------  349 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~------------------  349 (712)
                      ..     |     .+.+-++|..|++..|+-++-.+.|++.+.+-..+      ...++|..                  
T Consensus       305 ~~-----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~  374 (840)
T KOG2003|consen  305 EA-----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE  374 (840)
T ss_pred             hC-----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence            75     2     22346778888899999888888888876652110      00011110                  


Q ss_pred             --------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          350 --------------------------------------------GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       350 --------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                                                                  ...-.+-+..+++.|+++.|++.+.-.-.    .  
T Consensus       375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~----k--  448 (840)
T KOG2003|consen  375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK----K--  448 (840)
T ss_pred             hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh----c--
Confidence                                                        01112234445566666666655432211    1  


Q ss_pred             CCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          386 PASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                       +......+-.+|..+++.+|  ++..|..+...++      ..+...+.++.+.|.+.+..|++++|.+.|++++.-  
T Consensus       449 -dnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--  519 (840)
T KOG2003|consen  449 -DNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--  519 (840)
T ss_pred             -cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--
Confidence             11111223445555555533  5666777766665      334455677788888889999999999999999875  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                            +.....+++++|..+..+|+.++|+.+|-+.-.+...         .+.++..++.+|..+.+..+|++++.++
T Consensus       520 ------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  520 ------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             ------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence                  7778899999999999999999999999998888654         4788999999999999999999999999


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      ..+.+..       ..++..||.+|-+.|+-.+|.+++-.....+        +....+..+||..|....=+++|+.+|
T Consensus       585 ~slip~d-------p~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~  649 (840)
T KOG2003|consen  585 NSLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYF  649 (840)
T ss_pred             cccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8887655       2578899999999999999998887776543        223466778899999998899999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhcc
Q 005139          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGR  684 (712)
Q Consensus       624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~  684 (712)
                      ++|.-+        .|........+|.|+.+.|+       ++......|++.+++.-|.++...+|-
T Consensus       650 ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  650 EKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            999888        89888888999999999999       455556788899998888888877764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.88  E-value=1.9e-18  Score=182.85  Aligned_cols=381  Identities=14%  Similarity=0.075  Sum_probs=280.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (712)
                      ....++..|+.++..|+ +++|+.++.++++..         |....+|+.||.+|..+|+.+++...+-.|..+.    
T Consensus       138 ~l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqd---------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~----  203 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGD-LEEAEEILMEVIKQD---------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN----  203 (895)
T ss_pred             HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC---------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----
Confidence            35678899999999997 999999999999875         5567889999999999999999999998887776    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (712)
Q Consensus       300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (712)
                       +.+.    ..|..++.....+|++.+|.-+|.+|++.        .|......+..+.+|.+.|+...|...|.+++..
T Consensus       204 -p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~  270 (895)
T KOG2076|consen  204 -PKDY----ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL  270 (895)
T ss_pred             -CCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence             4443    34999999999999999999999999999        6778888999999999999999999999999988


Q ss_pred             HHhcCCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          380 HKDNGSPASLEE-AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       380 ~~~~~~~~~~~~-a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      .+..    .... -......+..+...++-+.|++.++.++...    ........++.++.++.....++.|.......
T Consensus       271 ~p~~----d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~----~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~  342 (895)
T KOG2076|consen  271 DPPV----DIERIEDLIRRVAHYFITHNERERAAKALEGALSKE----KDEASLEDLNILAELFLKNKQSDKALMKIVDD  342 (895)
T ss_pred             CCch----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc----cccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence            8622    2222 2233445777888888899999999887521    22222334567788999999999998887665


Q ss_pred             HHHH---------------------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005139          459 LTAF---------------------KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (712)
Q Consensus       459 l~~~---------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (712)
                      ...-                     -.....-......+...++.+..+.++..+++..+..--..        ...+..
T Consensus       343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~--------~~~d~~  414 (895)
T KOG2076|consen  343 RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV--------WVSDDV  414 (895)
T ss_pred             hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC--------ChhhhH
Confidence            5410                     00000011222223555666666666666666554332211        134567


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005139          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                      ..+..++.+|...|++.+|+.+|..+.....      ...+.+|..+|.+|..+|.+++|+++|++++...        +
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p  480 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITNREG------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--------P  480 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------C
Confidence            7899999999999999999999988775432      2225689999999999999999999999999862        3


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          598 FFGVALNQMGLACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      ....+...|+.++.++|++++|.+.++....-- +..-+...+...........+|...|+
T Consensus       481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk  541 (895)
T KOG2076|consen  481 DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK  541 (895)
T ss_pred             CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence            344788999999999999998888777633100 000000122344556667777777777

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.87  E-value=2.8e-19  Score=203.46  Aligned_cols=430  Identities=12%  Similarity=0.048  Sum_probs=315.5

Q ss_pred             cCCCcccccccccccCccccccCCC--CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLD--KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~  269 (712)
                      .....+...|++.+|++.+......  .+.....+..+...+...++ ++.|..++..+.+.-     -.  |+ ...+.
T Consensus        92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g-----~~--~~-~~~~n  162 (697)
T PLN03081         92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSG-----FE--PD-QYMMN  162 (697)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhC-----CC--cc-hHHHH
Confidence            3344456777777777555444322  22345566777777888876 899988887776531     12  22 45677


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ---------  340 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------  340 (712)
                      .+..+|.+.|++++|..+|++..+-            ...+|..+...|...|++++|+..|++.++....         
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~------------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l  230 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPER------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM  230 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCC------------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence            7889999999999999999987531            1235889999999999999999999998653100         


Q ss_pred             -------------------HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005139          341 -------------------VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI  401 (712)
Q Consensus       341 -------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~  401 (712)
                                         .....-.....++..|...|.+.|++++|.++|++...       ++    ..+|+.+...
T Consensus       231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~----~vt~n~li~~  299 (697)
T PLN03081        231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------KT----TVAWNSMLAG  299 (697)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------CC----hhHHHHHHHH
Confidence                               00000001123456677888999999999998876531       11    3478899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005139          402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA  481 (712)
Q Consensus       402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  481 (712)
                      |...|++++|+..|.+...    .+..|+ ..++..+...+...|++++|...+..+++.       ..+....++..|.
T Consensus       300 y~~~g~~~eA~~lf~~M~~----~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li  367 (697)
T PLN03081        300 YALHGYSEEALCLYYEMRD----SGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALV  367 (697)
T ss_pred             HHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHH
Confidence            9999999999999987643    233333 347888888999999999999999888765       2334466888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 005139          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE  561 (712)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  561 (712)
                      ..|.+.|++++|...|++..+.            ...+|+.+...|...|+.++|+++|++....     |..+.. .++
T Consensus       368 ~~y~k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd~-~T~  429 (697)
T PLN03081        368 DLYSKWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPNH-VTF  429 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCH-HHH
Confidence            9999999999999999876421            2456899999999999999999999997754     333332 467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 005139          562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT  641 (712)
Q Consensus       562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~  641 (712)
                      ..+...+.+.|..++|..+|+...+.   .+ ..+.  ...|..+..+|.+.|++++|.+++++.         +..|+ 
T Consensus       430 ~~ll~a~~~~g~~~~a~~~f~~m~~~---~g-~~p~--~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-  493 (697)
T PLN03081        430 LAVLSACRYSGLSEQGWEIFQSMSEN---HR-IKPR--AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-  493 (697)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHh---cC-CCCC--ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-
Confidence            77888899999999999999987652   11 1121  256888999999999999999987653         12444 


Q ss_pred             HHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139          642 LGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  700 (712)
Q Consensus       642 ~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~  700 (712)
                      ..+|..|...+...|+       .+.+....|+....|..|..+|.+.|++++|. +.++.+.+..
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~g  558 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRKG  558 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHcC
Confidence            3468888888888888       34455677887888999999999999999999 9998887653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4e-18  Score=167.29  Aligned_cols=352  Identities=15%  Similarity=0.098  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------h-------------cCCCCCHHHHHHHHHHHHHHHHcCC
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEI-------G-------------ANGKPSLELVMCLHVIAAIYCSLGQ  280 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~-------~-------------~~~~~~~~~~~~l~~la~~~~~~g~  280 (712)
                      ...++..|.++...|. ...|+..+..++..+..       +             ..+-+.......-..++.++....+
T Consensus       164 ~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q  242 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELGL-LSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ  242 (559)
T ss_pred             hHHHHHHHHHHHhhch-HHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence            5566666777766664 67777777666552200       0             0001100122233345556666666


Q ss_pred             HhHHHHHHHHhhch-hhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          281 YNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (712)
Q Consensus       281 ~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (712)
                      .++++.-++....+ .     +..+.    .-...|.+.....++++|+..|+..++.        +|-...-+-....+
T Consensus       243 ~~e~~~k~e~l~~~gf-----~~~~~----i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~  305 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGF-----PNSMY----IKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNV  305 (559)
T ss_pred             HHHHHHHHHHHHhccC-----CccHH----HHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHH
Confidence            66666666555544 1     22211    2345666677777777777777776554        34333333333333


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      ++...+-.+---+.+.+..+.+-..        .+...+|..|...+++++|+.+|++|+      ..+|....+|..+|
T Consensus       306 LYv~~~~skLs~LA~~v~~idKyR~--------ETCCiIaNYYSlr~eHEKAv~YFkRAL------kLNp~~~~aWTLmG  371 (559)
T KOG1155|consen  306 LYVKNDKSKLSYLAQNVSNIDKYRP--------ETCCIIANYYSLRSEHEKAVMYFKRAL------KLNPKYLSAWTLMG  371 (559)
T ss_pred             HHHHhhhHHHHHHHHHHHHhccCCc--------cceeeehhHHHHHHhHHHHHHHHHHHH------hcCcchhHHHHHhh
Confidence            4433332222222233333322111        134567889999999999999999999      46788889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (712)
                      .-|..+.+...|+..|++|+++        .|...++|+.||+.|.-++-..=|+-+|++|+..         .|.....
T Consensus       372 HEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---------kPnDsRl  434 (559)
T KOG1155|consen  372 HEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---------KPNDSRL  434 (559)
T ss_pred             HHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---------CCCchHH
Confidence            9999999999999999999999        8999999999999999999999999999999998         4455788


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (712)
                      |..||.+|.+.++.++|+++|.+|+......       ..++..||.+|.+.++..+|..+|++.++.....+...+ ..
T Consensus       435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte-------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t  506 (559)
T KOG1155|consen  435 WVALGECYEKLNRLEEAIKCYKRAILLGDTE-------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD-ET  506 (559)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhccccc-------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch-HH
Confidence            9999999999999999999999999874432       358899999999999999999999999997755555443 34


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ..+...|+..+...+++++|..+..+++.-
T Consensus       507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  507 IKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            566667999999999999999988877664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5.1e-19  Score=177.44  Aligned_cols=405  Identities=20%  Similarity=0.233  Sum_probs=283.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (712)
                      -+...|...+..|+ |+.|+.+|.+|+.+.         |.....|.+...+|..+|+|++|+.--.+.+++.     |.
T Consensus         4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~   68 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGD-FETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD   68 (539)
T ss_pred             HHHHHHHhhccccc-HHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence            35667889999997 999999999999864         2245678889999999999999999999999886     44


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCC-----------------
Q 005139          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ-----------------  365 (712)
Q Consensus       303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  365 (712)
                      .+    ..|..+|..+..+|+|++|+..|.+.|+.        +|.....+..|+.++.....                 
T Consensus        69 w~----kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~  136 (539)
T KOG0548|consen   69 WA----KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL  136 (539)
T ss_pred             hh----hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence            43    35999999999999999999999999998        78888888888877722210                 


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--------------
Q 005139          366 ----FSEAQKFCQMALDIHKDNGSPAS--LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN--------------  425 (712)
Q Consensus       366 ----~~~A~~~~~~al~~~~~~~~~~~--~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------  425 (712)
                          +-.....|...+...++....-.  .........+|.+.. .+..    ..+...+......              
T Consensus       137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~  211 (539)
T KOG0548|consen  137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPII  211 (539)
T ss_pred             hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCcc
Confidence                11111222333333322211000  000000001111100 0000    0000000000000              


Q ss_pred             CCCh------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          426 DQDA------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (712)
Q Consensus       426 ~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (712)
                      .+..      ..+.-...+|...+...++..|+++|..++++        . .....+.+.+.+|+..|.+.+++..+..
T Consensus       212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~  282 (539)
T KOG0548|consen  212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEK  282 (539)
T ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence            0001      13455678999999999999999999999999        5 5677888999999999999999999999


Q ss_pred             HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (712)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (712)
                      +++......  .+...++.++..+|..|..+++++.|+.+|++++.....               ..+.-.....++++.
T Consensus       283 a~E~gre~r--ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k  345 (539)
T KOG0548|consen  283 AVEVGRELR--ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALK  345 (539)
T ss_pred             HHHHhHHHH--HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHH
Confidence            888754320  111225666667888999999999999999998876543               223333444445544


Q ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--
Q 005139          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--  657 (712)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--  657 (712)
                      ..+...-+        .+..+.-...-|..++..|+|..|+.+|.+|+..        +|+....|.|.|.||..+|.  
T Consensus       346 ~~e~~a~~--------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~  409 (539)
T KOG0548|consen  346 EAERKAYI--------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYP  409 (539)
T ss_pred             HHHHHHhh--------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHH
Confidence            44433222        1223455556689999999999999999999988        89999999999999999998  


Q ss_pred             -----hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          658 -----EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       658 -----~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                           .+.....+|.....|.+-|.++..+.+|++|. +.|++.++.+|+
T Consensus       410 ~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~  458 (539)
T KOG0548|consen  410 EALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCch
Confidence                 45556789999999999999999999999999 999999999886

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.85  E-value=2.7e-16  Score=180.76  Aligned_cols=407  Identities=11%  Similarity=0.044  Sum_probs=232.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      .....++.+-..+.+.|+ +++|+.+|++....      +...+ ....+..+...+...|..++|..+++....     
T Consensus       368 ~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~------gvv~~-~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----  434 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR------GLLDM-DKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----  434 (1060)
T ss_pred             CCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC------CCCCc-hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----
Confidence            334444444455667776 77777777765431      11111 122333444556666777777776665432     


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                           |  ...+|..+-..+...|+++.|...|.++.+.-       ......+|..+...|.+.|++++|..+|+++..
T Consensus       435 -----p--d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~  500 (1060)
T PLN03218        435 -----P--TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN  500 (1060)
T ss_pred             -----C--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence                 1  12346666666777777777777777665431       112234566666777777777777777776654


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      ..   ..++    ..+|..+...|...|++++|+..|.+...    .+..|+ ..+|..+...|.+.|++++|..+|.+.
T Consensus       501 ~G---v~Pd----vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM  568 (1060)
T PLN03218        501 AG---VEAN----VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAEM  568 (1060)
T ss_pred             cC---CCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            21   1111    23566677777777777777777765432    122333 345666677777777777777777666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      .......    .|+ ..+|..+...|.+.|++++|.++|+++.+..-        .....+|..+...|.+.|++++|+.
T Consensus       569 ~~~~~gi----~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--------~p~~~tynsLI~ay~k~G~~deAl~  635 (1060)
T PLN03218        569 KAETHPI----DPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNI--------KGTPEVYTIAVNSCSQKGDWDFALS  635 (1060)
T ss_pred             HHhcCCC----CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------CCChHHHHHHHHHHHhcCCHHHHHH
Confidence            5421000    222 34666666677777777777777776655411        1123456667777777777777777


Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHH
Q 005139          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (712)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  618 (712)
                      +|.+....     |..+. ..+|..+...|.+.|++++|..+++++.+.    +-..   ...++..|...|.+.|++++
T Consensus       636 lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~p---d~~tynsLI~ay~k~G~~ee  702 (1060)
T PLN03218        636 IYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKL---GTVSYSSLMGACSNAKNWKK  702 (1060)
T ss_pred             HHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHhCCCHHH
Confidence            77766542     22222 235666667777777777777777666542    1111   12566667777777777777


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhh-h-CCCChhHHHHHHHHHHHHHHhccHHHHH
Q 005139          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEK-L-GTANPDVDDEKRRLAELLKEAGRVRSRK  689 (712)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~-l-~~~~p~~~~~~~~la~~~~~~g~~~~A~  689 (712)
                      |..+|++....     + ..|+ ..+|..|...|...|+       ... . ....|+ ..++..|...+.+.|++++|.
T Consensus       703 A~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~  774 (1060)
T PLN03218        703 ALELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGL  774 (1060)
T ss_pred             HHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence            77777665432     1 1333 3456677777777766       111 1 112333 334555666777777777777


Q ss_pred             HHHHHHHHHh
Q 005139          690 AQSLETLLDA  699 (712)
Q Consensus       690 ~~~l~~~l~~  699 (712)
                       +.+..+++.
T Consensus       775 -~l~~~M~k~  783 (1060)
T PLN03218        775 -DLLSQAKED  783 (1060)
T ss_pred             -HHHHHHHHc
Confidence             766666553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=8.5e-18  Score=165.02  Aligned_cols=339  Identities=18%  Similarity=0.145  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc----------cc---------h-HHHHHHHHHHHHHHHHcCCH
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ----------EH---------A-LAKFAGHMQLGDTYAMLGQL  324 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~---------~-~~~~~~~~~lg~~~~~~g~~  324 (712)
                      ...++..|.++...|....|+..|..++...+-..+.          ..         + ...+..-..++.+|....+.
T Consensus       164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~  243 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQH  243 (559)
T ss_pred             hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999998887643211000          00         0 00111123445556666666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005139          325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (712)
Q Consensus       325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~  404 (712)
                      ++++.-++.....       .-|.....-...|.+.+...++++|+..|+..++..+     .......+|.+   +++-
T Consensus       244 ~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~dmdlySN---~LYv  308 (559)
T KOG1155|consen  244 EEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLDDMDLYSN---VLYV  308 (559)
T ss_pred             HHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcchhHHHHhH---HHHH
Confidence            6666655554443       1345555666778888899999999999988776532     23333333333   3333


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (712)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (712)
                      ..+-. .+.++.+-.  .   ..+.....+.+.+|..|...++.++|+.+|++|+++        +|....+|..+|.-|
T Consensus       309 ~~~~s-kLs~LA~~v--~---~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEy  374 (559)
T KOG1155|consen  309 KNDKS-KLSYLAQNV--S---NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEY  374 (559)
T ss_pred             HhhhH-HHHHHHHHH--H---HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHH
Confidence            32211 222221111  1   122333456677899999999999999999999999        999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                      ..+.+...|+..|+.|+++         .|....+|+.||+.|..++-+.=|+-+|++|+...|..       ..+|..|
T Consensus       375 vEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-------sRlw~aL  438 (559)
T KOG1155|consen  375 VEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND-------SRLWVAL  438 (559)
T ss_pred             HHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-------hHHHHHH
Confidence            9999999999999999999         45568899999999999999999999999999986654       3688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  644 (712)
                      |.+|.++++.++|+.+|.+|+..-        .....++..||.+|.++++..+|..+|++.++.. ...|.-.|.+..+
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka  509 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKA  509 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHH
Confidence            999999999999999999999852        1234789999999999999999999999999975 4445556777777


Q ss_pred             HHHHHHHHHHccc
Q 005139          645 YSNLAGTYDAIGR  657 (712)
Q Consensus       645 ~~~La~~~~~~g~  657 (712)
                      ..-||.-+...++
T Consensus       510 ~~fLA~~f~k~~~  522 (559)
T KOG1155|consen  510 RLFLAEYFKKMKD  522 (559)
T ss_pred             HHHHHHHHHhhcc
Confidence            7778888777665

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.5e-18  Score=172.04  Aligned_cols=379  Identities=18%  Similarity=0.196  Sum_probs=270.9

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch------
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI------  294 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~------  294 (712)
                      ..-.+.+|++++..++ |.+|......- ++.         .....+.+..+.++....+|+.|..++.++-..      
T Consensus        49 p~d~~~~aq~l~~~~~-y~ra~~lit~~-~le---------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y  117 (611)
T KOG1173|consen   49 PADIYWLAQVLYLGRQ-YERAAHLITTY-KLE---------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY  117 (611)
T ss_pred             hHHHHHHHHHHHhhhH-HHHHHHHHHHh-hhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence            3345677888988886 77776665443 111         122557788899999999999999988743110      


Q ss_pred             hhhh---------hcccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---------------------hC
Q 005139          295 PVIE---------EGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---------------------LG  343 (712)
Q Consensus       295 ~~~~---------~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~~  343 (712)
                      ....         .+.+. .......++..|.+|....++++|...|.+|+..-...                     +.
T Consensus       118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~  197 (611)
T KOG1173|consen  118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLE  197 (611)
T ss_pred             cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHh
Confidence            0000         00000 01123356778899999999999999998886541110                     00


Q ss_pred             --------CCC--------------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          344 --------ETD--------------------------------PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       344 --------~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                              ..+                                ......+...+..++..++|.+..+.+...++..+-.
T Consensus       198 ~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh  277 (611)
T KOG1173|consen  198 SLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH  277 (611)
T ss_pred             cccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC
Confidence                    000                                0112333444555555666666666666665555433


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       384 ~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                      ..       ..-..+| ++...|+..+-...-.+..      ...|..+..|+.+|..|...|++.+|.++|-++..+  
T Consensus       278 ~~-------~~~~~ia-~l~el~~~n~Lf~lsh~LV------~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--  341 (611)
T KOG1173|consen  278 LP-------CLPLHIA-CLYELGKSNKLFLLSHKLV------DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--  341 (611)
T ss_pred             cc-------hHHHHHH-HHHHhcccchHHHHHHHHH------HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--
Confidence            22       1223344 4445554433322222222      456777888999999999999999999999999998  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                            ++..+.+|..+|..+...|..++|+.+|..|-+++...    ..|     ...+|.-|...++++-|.++|.+|
T Consensus       342 ------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~----hlP-----~LYlgmey~~t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  342 ------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC----HLP-----SLYLGMEYMRTNNLKLAEKFFKQA  406 (611)
T ss_pred             ------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC----cch-----HHHHHHHHHHhccHHHHHHHHHHH
Confidence                  88899999999999999999999999999999997553    223     457899999999999999999999


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      +.+.|..+       -++..+|.+.+..+.|.+|..+|+.++...+....... .....+.+||.+|.+++.+++|+.+|
T Consensus       407 ~ai~P~Dp-------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  407 LAIAPSDP-------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HhcCCCcc-------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            99988763       47788999999999999999999999988777766654 45678999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      ++++.+        .|..+.++..+|.+|..+|+
T Consensus       479 q~aL~l--------~~k~~~~~asig~iy~llgn  504 (611)
T KOG1173|consen  479 QKALLL--------SPKDASTHASIGYIYHLLGN  504 (611)
T ss_pred             HHHHHc--------CCCchhHHHHHHHHHHHhcC
Confidence            999998        77777777777766666665

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=1.6e-17  Score=176.05  Aligned_cols=377  Identities=16%  Similarity=0.162  Sum_probs=283.1

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (712)
                      .+...|...+..|++++|..++.++++..     +.++.    +|+.||.+|..+|+.+++...+-.|-.+        +
T Consensus       141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~  203 (895)
T KOG2076|consen  141 QLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL--------N  203 (895)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc--------C
Confidence            45556788888899999999999999886     44443    4999999999999999999999888777        5


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      |.....|..++.....+|.+.+|.-+|.+|+...+...        ...+..+.+|...|++..|+..|.+.+.... ..
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~  274 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PV  274 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-ch
Confidence            66668999999999999999999999999999876552        3677889999999999999999999886433 01


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR----  502 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----  502 (712)
                      +....-......+..+...++-+.|++.+..++....      .......+..++.++.....++.|.........    
T Consensus       275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e  348 (895)
T KOG2076|consen  275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE  348 (895)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence            1112233344557888888888999999999988422      223344566888999999999999888766655    


Q ss_pred             ------------------HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          503 ------------------IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       503 ------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                                        ++.-  +......+..+...++.+..+.++..+++..+..--..      ........+..+
T Consensus       349 ~d~~e~~~~~~~~~~~~~~~~~--~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~d~  420 (895)
T KOG2076|consen  349 KDDSEWDTDERRREEPNALCEV--GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYLDL  420 (895)
T ss_pred             CChhhhhhhhhccccccccccC--CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHHHH
Confidence                              1111  01112222223556666666666666666555322111      123445788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  644 (712)
                      +.+|...|++.+|+.+|..++..       .....+.+|+.+|.||..+|.+++|+++|++++.+        .|+..++
T Consensus       421 a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~  485 (895)
T KOG2076|consen  421 ADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA  485 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence            99999999999999999988763       22334679999999999999999999999999999        9999999


Q ss_pred             HHHHHHHHHHccc----hhhhCC-CChh-----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005139          645 YSNLAGTYDAIGR----EEKLGT-ANPD-----------VDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  699 (712)
Q Consensus       645 ~~~La~~~~~~g~----~~~l~~-~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~  699 (712)
                      ...|+.+|..+|+    .+.+.+ .+|+           ......+...+|...|+.++-+ ...-.++..
T Consensus       486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~~  555 (895)
T KOG2076|consen  486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVDD  555 (895)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence            9999999999999    233322 1222           2345678889999999999877 555555543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.83  E-value=4.8e-17  Score=169.57  Aligned_cols=427  Identities=14%  Similarity=0.057  Sum_probs=323.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+.++-.+...+...|+ |..+.+.|++++...         ......|+.++.+|...|....|+.+++..+...+. 
T Consensus       321 nd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~---------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~-  389 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFS---------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ-  389 (799)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhh---------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC-
Confidence            455566667777777776 888888888887654         223567888999999999999999999998877532 


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-----------CHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-----------QFS  367 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~  367 (712)
                        +.++..   .++.-..|+...+.+++++.+..+++......   .......++..+|.+|..+-           ...
T Consensus       390 --ps~~s~---~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~  461 (799)
T KOG4162|consen  390 --PSDISV---LLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHK  461 (799)
T ss_pred             --CCcchH---HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence              333322   35555667778899999999999999976332   23345667777887776432           245


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC
Q 005139          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR  447 (712)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  447 (712)
                      ++++.+++|+++.+.+.        .+.+.++.-|..+++.+.|+.+..+++..     .....+.++..++.++...++
T Consensus       462 kslqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l-----~~~~~~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  462 KSLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALAL-----NRGDSAKAWHLLALVLSAQKR  528 (799)
T ss_pred             HHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHhhhhh
Confidence            66777777777655443        26889999999999999999999999854     234456788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH
Q 005139          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (712)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (712)
                      +.+|+.+...+++-        .+.+.........+-...++.++|+..+...+.+++...+-...-+.......-+.+.
T Consensus       529 ~~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~  600 (799)
T KOG4162|consen  529 LKEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH  600 (799)
T ss_pred             hHHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence            99999999999987        4554455555556666789999999999999999875321100111122233334444


Q ss_pred             HHcccHHHHHHHHHHHHHHHHhC----------------CCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          528 ESMNELEQAIKLLQKALKIYNDA----------------PGQQS---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      ....+..+|++.+.++..+....                ++...   ....+|...+..+...++.++|..++.+|-.+.
T Consensus       601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~  680 (799)
T KOG4162|consen  601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID  680 (799)
T ss_pred             cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence            45556777777777666554421                01111   233456778899999999999999999998763


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc---------hh
Q 005139          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---------EE  659 (712)
Q Consensus       589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---------~~  659 (712)
                              +..+..|+..|.++..+|++.+|.+.|..|+.+        +|+...+...||.++...|+         ..
T Consensus       681 --------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~  744 (799)
T KOG4162|consen  681 --------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLS  744 (799)
T ss_pred             --------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence                    456789999999999999999999999999999        99999999999999999999         22


Q ss_pred             hhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          660 KLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       660 ~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .....+|.+.++|+.||.++.++|+.++|. ..|..++++.+.
T Consensus       745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S  786 (799)
T KOG4162|consen  745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES  786 (799)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence            334678999999999999999999999999 999999998887

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=8.7e-18  Score=169.19  Aligned_cols=290  Identities=18%  Similarity=0.157  Sum_probs=239.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                      .+....+..++..++|.+..+.+...++.        +|....++ ..+| ++...|+..+-..+-.+.++..|..    
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~--------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~----  311 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEK--------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSK----  311 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhh--------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCC----
Confidence            35777888999999999999999998887        44433333 4555 7888887766555555555555443    


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                          +..|+.+|..|...|++.+|..+|.++.      ..++..+.+|...|..|...|..++|+..|..|-++      
T Consensus       312 ----a~sW~aVg~YYl~i~k~seARry~SKat------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl------  375 (611)
T KOG1173|consen  312 ----ALSWFAVGCYYLMIGKYSEARRYFSKAT------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL------  375 (611)
T ss_pred             ----CcchhhHHHHHHHhcCcHHHHHHHHHHh------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh------
Confidence                3469999999999999999999999986      457788889999999999999999999999999998      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                        -+........+|.-|.+++.+.-|..+|.+|+.++.         ..+.++..+|.+.+..+.|.+|..+|+.++...
T Consensus       376 --~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P---------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i  444 (611)
T KOG1173|consen  376 --MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP---------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVI  444 (611)
T ss_pred             --ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC---------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence              444455677889999999999999999999999943         346679999999999999999999999999887


Q ss_pred             HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (712)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  627 (712)
                      +...........++.+||.+|.+++.+++|+.+|++++.+        .+..+.++..+|.+|..+|+++.|+++|.+|+
T Consensus       445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            7765544456667899999999999999999999999986        23446889999999999999999999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139          628 SILEQECGPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       628 ~~~~~~~~~~~p~~~~~~~~La~~~~~  654 (712)
                      .+        .|+...+-..|+.+...
T Consensus       517 ~l--------~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  517 AL--------KPDNIFISELLKLAIED  535 (611)
T ss_pred             hc--------CCccHHHHHHHHHHHHh
Confidence            99        78776665556555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.3e-17  Score=167.55  Aligned_cols=387  Identities=19%  Similarity=0.163  Sum_probs=276.3

Q ss_pred             CCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005139          193 GATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (712)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la  272 (712)
                      ......+.|+|..|+..|.++...+|.+...+.+...+|...|+ |++|+.-..+.+++.         |.++..|..+|
T Consensus         8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~---------p~w~kgy~r~G   77 (539)
T KOG0548|consen    8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN---------PDWAKGYSRKG   77 (539)
T ss_pred             HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC---------CchhhHHHHhH
Confidence            34456677889999999999999999999999999999999997 999999999888765         77899999999


Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcC---------------------CHHHHHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG---------------------QLENSLMCY  331 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------------~~~~A~~~~  331 (712)
                      ..+.-+|+|++|+..|.+.|+..     +.+..    ++..|+.++....                     ++-.....|
T Consensus        78 aa~~~lg~~~eA~~ay~~GL~~d-----~~n~~----L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~  148 (539)
T KOG0548|consen   78 AALFGLGDYEEAILAYSEGLEKD-----PSNKQ----LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY  148 (539)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcC-----CchHH----HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence            99999999999999999999886     33322    2444444441110                     001111122


Q ss_pred             HHHHHHHHHH--------------------hC----------------CCCh---------------------hHHHHHH
Q 005139          332 TTGLEVQKQV--------------------LG----------------ETDP---------------------RVGETCR  354 (712)
Q Consensus       332 ~~al~~~~~~--------------------~~----------------~~~~---------------------~~~~~~~  354 (712)
                      ...++..+..                    .+                ...|                     ..+...-
T Consensus       149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek  228 (539)
T KOG0548|consen  149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK  228 (539)
T ss_pred             HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence            2222221110                    00                0000                     1234456


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCChhHHH
Q 005139          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN-DQDAEVAS  433 (712)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~  433 (712)
                      .+|...+...++..|++.|..++++....         ..+.+.+.+|+..|.+.+.+.....+++..... .+...++.
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~~~i---------t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak  299 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELATDI---------TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK  299 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHhhhh---------HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence            67777777788888888888888777222         246677777777777777777777665432211 11222455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ++..+|..|...++++.|+.+|++++.-.+        .        ..+.......++++...+...-+         .
T Consensus       300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--------t--------~~~ls~lk~~Ek~~k~~e~~a~~---------~  354 (539)
T KOG0548|consen  300 ALARLGNAYTKREDYEGAIKYYQKALTEHR--------T--------PDLLSKLKEAEKALKEAERKAYI---------N  354 (539)
T ss_pred             HHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--------C--------HHHHHHHHHHHHHHHHHHHHHhh---------C
Confidence            555677777778888888888888766522        1        23333334444444444443333         4


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      |..+.-...-|..++..|+|..|+..|.+|+...++.       +..|.+.|.+|..+|.+..|+...+.++++      
T Consensus       355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL------  421 (539)
T KOG0548|consen  355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-------ARLYSNRAACYLKLGEYPEALKDAKKCIEL------  421 (539)
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            4456666677999999999999999999998876544       578999999999999999999999999986      


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       594 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                        .+.....|..-|.++..+.+|++|.+.|++++++        +|....+...+..|+..+
T Consensus       422 --~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 --DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             --CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence              3456789999999999999999999999999998        899999999999998864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=1.4e-16  Score=178.16  Aligned_cols=425  Identities=12%  Similarity=-0.021  Sum_probs=304.2

Q ss_pred             cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l  271 (712)
                      ..+-...++|++..|++.+.++...+|.....+..++.++...|+ +++|+.++++++.       ..  +.....+..+
T Consensus        39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~-------p~--n~~~~~llal  108 (822)
T PRK14574         39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQS-------SM--NISSRGLASA  108 (822)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhcc-------CC--CCCHHHHHHH
Confidence            455567788999999999999999999986555588888888886 8999999999972       11  2224455566


Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (712)
                      |.+|...|+|++|+++|+++++..     |+.+.    ++..++.++...++.++|+..+++++..        +|....
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~d-----P~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~  171 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKD-----PTNPD----LISGMIMTQADAGRGGVVLKQATELAER--------DPTVQN  171 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHH
Confidence            889999999999999999999986     55544    3668899999999999999999998877        455333


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH----------------
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL----------------  415 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~----------------  415 (712)
                       +..++.++...++..+|+..++++++..+....        .+..+..++...|-...|++..                
T Consensus       172 -~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~  242 (822)
T PRK14574        172 -YMTLSYLNRATDRNYDALQASSEAVRLAPTSEE--------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE  242 (822)
T ss_pred             -HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence             345566666677787799999999988765432        2233333333333222222221                


Q ss_pred             -------------------------HHHHH----HHHhCCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          416 -------------------------VLASM----TMIANDQ----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (712)
Q Consensus       416 -------------------------~~al~----~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (712)
                                               ++++.    +......    .+....+....-.++...|++.+++..|+..... 
T Consensus       243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-  321 (822)
T PRK14574        243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-  321 (822)
T ss_pred             HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-
Confidence                                     11211    1111112    1233445555566677888899888888776543 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005139          463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK  542 (712)
Q Consensus       463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (712)
                          +..-|  ..+....|..|...++.++|+.+|..++.-.....   ..+........|...|...+++++|..++++
T Consensus       322 ----~~~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~---~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~  392 (822)
T PRK14574        322 ----GYKMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF---RNSDDLLDADDLYYSLNESEQLDKAYQFAVN  392 (822)
T ss_pred             ----CCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc---CCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence                11124  45777889999999999999999999976532110   1122233346788899999999999999999


Q ss_pred             HHHHHHh-C--C-----CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005139          543 ALKIYND-A--P-----GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (712)
Q Consensus       543 al~~~~~-~--~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g  614 (712)
                      .....+- .  .     ..++........++.++...|++.+|++.+++.+...        |....++..+|.++...|
T Consensus       393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg  464 (822)
T PRK14574        393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARD  464 (822)
T ss_pred             HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcC
Confidence            9874431 0  1     2334566778889999999999999999999997752        334578889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHH
Q 005139          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELL  679 (712)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~  679 (712)
                      .+.+|...++.++.+        +|+...+...+|.++..+|+       ...+....|+...+. +|...+
T Consensus       465 ~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~-~l~r~~  527 (822)
T PRK14574        465 LPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ-ELDRQR  527 (822)
T ss_pred             CHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH-HHHHHH
Confidence            999999999998888        99999999999999999999       333456667766432 444433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.80  E-value=1.5e-15  Score=174.57  Aligned_cols=344  Identities=14%  Similarity=0.089  Sum_probs=219.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (712)
                      .+..+-..+...|+ ++.|..+|.++.+.-     ..  |+ ...|..+...|.+.|++++|..+|++.....     . 
T Consensus       439 Tyn~LL~a~~k~g~-~e~A~~lf~~M~~~G-----l~--pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v-  503 (1060)
T PLN03218        439 TFNMLMSVCASSQD-IDGALRVLRLVQEAG-----LK--AD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----V-  503 (1060)
T ss_pred             HHHHHHHHHHhCcC-HHHHHHHHHHHHHcC-----CC--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----C-
Confidence            34444455556664 666666666654321     11  22 3456667777778888888888877765431     1 


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                      .|  ...+|..+...|...|++++|+.+|..+...-      -.|+ ..+|..+...|.+.|++++|.+++.++......
T Consensus       504 ~P--dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g  574 (1060)
T PLN03218        504 EA--NVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP  574 (1060)
T ss_pred             CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence            11  22357777778888888888888777765431      1233 356777777788888888888888777553111


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (712)
Q Consensus       383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (712)
                      . .++    ..+|..+...|...|++++|.+.|+.....    + ......+|..+...|.+.|++++|+.+|.+.... 
T Consensus       575 i-~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-  643 (1060)
T PLN03218        575 I-DPD----HITVGALMKACANAGQVDRAKEVYQMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-  643 (1060)
T ss_pred             C-CCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Confidence            1 111    236677777788888888888888766431    1 1223456777777788888888888888776553 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005139          463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK  542 (712)
Q Consensus       463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (712)
                          + -.|+ ...|..+...|.+.|++++|.+++.++.+....       + ...++..|...|.+.|++++|..+|++
T Consensus       644 ----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-------p-d~~tynsLI~ay~k~G~~eeA~~lf~e  709 (1060)
T PLN03218        644 ----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-------L-GTVSYSSLMGACSNAKNWKKALELYED  709 (1060)
T ss_pred             ----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                1 1232 456777777888888888888888777654111       1 245677778888888888888888877


Q ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL  622 (712)
Q Consensus       543 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  622 (712)
                      ....     +..+.. .+|..+...|.+.|++++|+++|++....    +- .+.  ..+|..+...|...|++++|..+
T Consensus       710 M~~~-----g~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi-~Pd--~~Ty~sLL~a~~k~G~le~A~~l  776 (1060)
T PLN03218        710 IKSI-----KLRPTV-STMNALITALCEGNQLPKALEVLSEMKRL----GL-CPN--TITYSILLVASERKDDADVGLDL  776 (1060)
T ss_pred             HHHc-----CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence            6542     222222 46777788888888888888888776532    11 111  24566666777788888888887


Q ss_pred             HHHHHH
Q 005139          623 FEEARS  628 (712)
Q Consensus       623 ~~~al~  628 (712)
                      |.++.+
T Consensus       777 ~~~M~k  782 (1060)
T PLN03218        777 LSQAKE  782 (1060)
T ss_pred             HHHHHH
Confidence            777655

>PLN03077 Protein ECB2; Provisional

Probab=99.79  E-value=3.9e-16  Score=182.11  Aligned_cols=426  Identities=14%  Similarity=0.054  Sum_probs=266.9

Q ss_pred             CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---------------------
Q 005139          194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF---------------------  252 (712)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~---------------------  252 (712)
                      ...+.+.|++..|...|.+....+   ...+..+...|.+.|+ +++|+++|.+....-                     
T Consensus       229 i~~y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~  304 (857)
T PLN03077        229 ITMYVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVISACELLGDE  304 (857)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence            344556666666665555554433   3456777778888886 899999888875421                     


Q ss_pred             -------HHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHH
Q 005139          253 -------EIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE  325 (712)
Q Consensus       253 -------~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  325 (712)
                             .......-.| ....+..|...|.+.|++++|..+|++...       +     ...+|..+...|...|+++
T Consensus       305 ~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~-----d~~s~n~li~~~~~~g~~~  371 (857)
T PLN03077        305 RLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------K-----DAVSWTAMISGYEKNGLPD  371 (857)
T ss_pred             HHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-----CeeeHHHHHHHHHhCCCHH
Confidence                   0000000001 123344455555666666666666655321       1     1113555666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc
Q 005139          326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK  405 (712)
Q Consensus       326 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~  405 (712)
                      +|+.+|++..+..      -.|+. .++..+-..+...|+++.|.+++..+++.....       ...++..|...|.+.
T Consensus       372 ~A~~lf~~M~~~g------~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-------~~~~~n~Li~~y~k~  437 (857)
T PLN03077        372 KALETYALMEQDN------VSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLIS-------YVVVANALIEMYSKC  437 (857)
T ss_pred             HHHHHHHHHHHhC------CCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHc
Confidence            6666666543320      01222 233334445556666666666666554432111       123567777888888


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH------------
Q 005139          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV------------  473 (712)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------------  473 (712)
                      |++++|.+.|++..       . + ...+|+.+...|...|++++|+.+|++.+..    ..++....            
T Consensus       438 g~~~~A~~vf~~m~-------~-~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~  504 (857)
T PLN03077        438 KCIDKALEVFHNIP-------E-K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGA  504 (857)
T ss_pred             CCHHHHHHHHHhCC-------C-C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhch
Confidence            88888888887542       1 1 1346777778888888888888888887531    11111100            


Q ss_pred             -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH
Q 005139          474 -------------------ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (712)
Q Consensus       474 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (712)
                                         ...+..|...|.+.|++++|...|+..    ..         ...+|+.+...|...|+.+
T Consensus       505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~  571 (857)
T PLN03077        505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGS  571 (857)
T ss_pred             HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHH
Confidence                               112233446677777777777777654    11         2457888999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005139          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (712)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g  614 (712)
                      +|+.+|++..+.     |..+.. .++..+-..+.+.|++++|..+|+......   + ..+.  ...|..+..++.+.|
T Consensus       572 ~A~~lf~~M~~~-----g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---g-i~P~--~~~y~~lv~~l~r~G  639 (857)
T PLN03077        572 MAVELFNRMVES-----GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKY---S-ITPN--LKHYACVVDLLGRAG  639 (857)
T ss_pred             HHHHHHHHHHHc-----CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHh---C-CCCc--hHHHHHHHHHHHhCC
Confidence            999999987753     222221 245566677889999999999999876432   1 1121  267889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHH
Q 005139          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRS  687 (712)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~  687 (712)
                      ++++|.+++++.- +        .|+ ..+|..|...+...|+       .+.+....|++...+..|+.+|...|+|++
T Consensus       640 ~~~eA~~~~~~m~-~--------~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        640 KLTEAYNFINKMP-I--------TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             CHHHHHHHHHHCC-C--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            9999999988751 1        444 3456666666666666       345557788888999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 005139          688 RKAQSLETLLDA  699 (712)
Q Consensus       688 A~~~~l~~~l~~  699 (712)
                      |. +..+.+.+.
T Consensus       710 a~-~vr~~M~~~  720 (857)
T PLN03077        710 VA-RVRKTMREN  720 (857)
T ss_pred             HH-HHHHHHHHc
Confidence            99 887777654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.79  E-value=1.1e-15  Score=144.62  Aligned_cols=364  Identities=13%  Similarity=0.081  Sum_probs=274.6

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (712)
Q Consensus       260 ~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  339 (712)
                      .++..+.-++.+|..++..|++..|+..|..|++..     |+    ...+++..|.+|..+|+-..|+.-+.+++++  
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--  101 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----PN----NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--  101 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----ch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence            345566778889999999999999999999999886     33    3345899999999999999999999999999  


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHcCCHHHHH
Q 005139          340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA-------SLEEAADRRLMGLICETKGDHEAAL  412 (712)
Q Consensus       340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~la~~~~~~g~~~~A~  412 (712)
                            .|+...+....|.+++++|++++|..-|...+...+..+...       ....-..+......+...|++..|+
T Consensus       102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai  175 (504)
T KOG0624|consen  102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI  175 (504)
T ss_pred             ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence                  789999999999999999999999999999997665433210       0111223334455566789999999


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 005139          413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE  492 (712)
Q Consensus       413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  492 (712)
                      ++....+      ...+..+..+...+.+|...|+...|+.-++.+-.+        ..+....++.++.+++..|+.+.
T Consensus       176 ~~i~~ll------Ei~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~  241 (504)
T KOG0624|consen  176 EMITHLL------EIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAEN  241 (504)
T ss_pred             HHHHHHH------hcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHH
Confidence            9998887      356777888999999999999999999999999888        66778899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCChhHHHHHHHH---------HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 005139          493 SKSYCENALRIYEKPVPGVPPEEIASGLTDV---------SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ  563 (712)
Q Consensus       493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  563 (712)
                      ++...++++++-      .++..-...|..|         +.-....++|.++++..++.++..+..   ..........
T Consensus       242 sL~~iRECLKld------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~  312 (504)
T KOG0624|consen  242 SLKEIRECLKLD------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRV  312 (504)
T ss_pred             HHHHHHHHHccC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeehe
Confidence            999999999983      2233222223322         223445667777777777776654432   2222344556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005139          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (712)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~  643 (712)
                      +..++..-|++.+|+....+++++        .+..+.++...|.+|+....|+.|+.-|++|.++        +++...
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~--------n~sn~~  376 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL--------NESNTR  376 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--------CcccHH
Confidence            788899999999999999999986        3445689999999999999999999999999998        665555


Q ss_pred             HHHHHHHHH---HHccc---hhhhC----CCChhHHHHHHHHHHHH
Q 005139          644 VYSNLAGTY---DAIGR---EEKLG----TANPDVDDEKRRLAELL  679 (712)
Q Consensus       644 ~~~~La~~~---~~~g~---~~~l~----~~~p~~~~~~~~la~~~  679 (712)
                      +...+-.+-   ...|+   ++.+|    ....+...+|..+|.-+
T Consensus       377 ~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkW  422 (504)
T KOG0624|consen  377 AREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKW  422 (504)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence            555444332   22333   44444    22334455566665544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=6.6e-17  Score=151.74  Aligned_cols=288  Identities=19%  Similarity=0.152  Sum_probs=234.8

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK-PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (712)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~-~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~  293 (712)
                      ...|.....++..  .++...| ..+|-..+...+++-.....+. ......+.-..+|.||+++|-+.+|.+.++.+++
T Consensus       175 a~~p~l~kaLFey--~fyhenD-v~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~  251 (478)
T KOG1129|consen  175 AERPTLVKALFEY--LFYHEND-VQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT  251 (478)
T ss_pred             ccChHHHHHHHHH--HHHhhhh-HHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh
Confidence            3456777777665  3444555 8888887777766543322211 1233345567899999999999999999999997


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC  373 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (712)
                      ..      .++.    .+..|+.+|....+...|+..|.+.++.        .|.....+..++.++..++++++|.++|
T Consensus       252 q~------~~~d----TfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lY  313 (478)
T KOG1129|consen  252 QF------PHPD----TFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLY  313 (478)
T ss_pred             cC------Cchh----HHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence            63      3333    4888999999999999999999999988        5788888999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGF  453 (712)
Q Consensus       374 ~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  453 (712)
                      +.+++..+.+..        +...+|.-|+.-++.+-|+.+|++.+..-      ......++++|.|++..++++-++.
T Consensus       314 k~vlk~~~~nvE--------aiAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  314 KLVLKLHPINVE--------AIACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHHhcCCccce--------eeeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHH
Confidence            999988755432        45567888999999999999999887532      2335678999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005139          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                      .|++|+....+     ....+.+|++||.+....|++.-|..+|+-++..         ++....++++||.+-.+.|+.
T Consensus       380 sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---------d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  380 SFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---------DAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc---------CcchHHHHHhHHHHHhhcCch
Confidence            99999988543     4566889999999999999999999999988876         455688999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCC
Q 005139          534 EQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       534 ~~A~~~~~~al~~~~~~~  551 (712)
                      ++|..++..|-...+...
T Consensus       446 ~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  446 LGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HHHHHHHHHhhhhCcccc
Confidence            999999999988877664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.79  E-value=1.4e-15  Score=173.16  Aligned_cols=405  Identities=14%  Similarity=0.048  Sum_probs=297.7

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (712)
                      .+......+...|+ +++|+++|.......    ...++   ..+|..+..++...++++.|..++.......   ..+ 
T Consensus        89 ~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~----~~~~~---~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~-  156 (697)
T PLN03081         89 SLCSQIEKLVACGR-HREALELFEILEAGC----PFTLP---ASTYDALVEACIALKSIRCVKAVYWHVESSG---FEP-  156 (697)
T ss_pred             eHHHHHHHHHcCCC-HHHHHHHHHHHHhcC----CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCc-
Confidence            34555666778886 999999998765321    01122   3467778888899999999999998876542   111 


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                          ...++..+...|...|+++.|...|++..+          | ...+|..+...|...|++++|+.+|++++.....
T Consensus       157 ----~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~  221 (697)
T PLN03081        157 ----DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD  221 (697)
T ss_pred             ----chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence                233588899999999999999999987532          2 2357888999999999999999999998753211


Q ss_pred             cCCC------------CC----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          383 NGSP------------AS----------------LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV  434 (712)
Q Consensus       383 ~~~~------------~~----------------~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  434 (712)
                      ....            ..                .....++..+...|...|++++|...|+...         .....+
T Consensus       222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~vt  292 (697)
T PLN03081        222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------EKTTVA  292 (697)
T ss_pred             CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------CCChhH
Confidence            0000            00                0011245667788899999999999887542         123467


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      |+.+...|...|++++|+.+|++....     + -.| ...++..+...+...|++++|.+++..+++..-.        
T Consensus       293 ~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~--------  357 (697)
T PLN03081        293 WNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--------  357 (697)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC--------
Confidence            888999999999999999999887653     1 022 3457888899999999999999999988876211        


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (712)
                      ....++..|...|.+.|++++|...|++..+  ++        ..+|..+...|.+.|+.++|+++|++....    +- 
T Consensus       358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d--------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~-  422 (697)
T PLN03081        358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN--------LISWNALIAGYGNHGRGTKAVEMFERMIAE----GV-  422 (697)
T ss_pred             CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC--------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-
Confidence            1245678899999999999999999987642  11        246888999999999999999999997653    21 


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChh
Q 005139          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPD  667 (712)
Q Consensus       595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~  667 (712)
                      .+.  ..++..+..++...|++++|..+|+...+.    .+ ..| ....|..+..+|.+.|+       .+.. ...|+
T Consensus       423 ~Pd--~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~  493 (697)
T PLN03081        423 APN--HVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HR-IKP-RAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT  493 (697)
T ss_pred             CCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cC-CCC-CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence            222  367888889999999999999999988753    11 123 33468888999999998       2222 23343


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc-CC
Q 005139          668 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VN  704 (712)
Q Consensus       668 ~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~-i~  704 (712)
                       ..+|..|...+...|+++.|. ..++++++..|+ +.
T Consensus       494 -~~~~~~Ll~a~~~~g~~~~a~-~~~~~l~~~~p~~~~  529 (697)
T PLN03081        494 -VNMWAALLTACRIHKNLELGR-LAAEKLYGMGPEKLN  529 (697)
T ss_pred             -HHHHHHHHHHHHHcCCcHHHH-HHHHHHhCCCCCCCc
Confidence             456899999999999999999 999999998887 53

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=7e-18  Score=158.22  Aligned_cols=283  Identities=16%  Similarity=0.137  Sum_probs=234.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005139          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV--GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAAD  394 (712)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~  394 (712)
                      +|+...+...|-......+++............  .+-...+|.||+.+|-+.+|.+.++.++...+-.         .+
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------dT  258 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------DT  258 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch---------hH
Confidence            445556666666666666555443222222222  2233568999999999999999999999766432         37


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 005139          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (712)
Q Consensus       395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (712)
                      +..|+.+|....+...|+..|.+.+      +..|.....+..++.++..++++++|.++|+.+++.        ++..+
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gl------d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv  324 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGL------DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV  324 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhh------hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence            8899999999999999999999887      466777888999999999999999999999999998        88888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC
Q 005139          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (712)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (712)
                      .+...+|.-|+..++.+-|+.+|++.+.+      |...   ...+.++|.|++..++++-++..|++|+....+    +
T Consensus       325 EaiAcia~~yfY~~~PE~AlryYRRiLqm------G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~----~  391 (478)
T KOG1129|consen  325 EAIACIAVGYFYDNNPEMALRYYRRILQM------GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ----P  391 (478)
T ss_pred             eeeeeeeeccccCCChHHHHHHHHHHHHh------cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC----c
Confidence            99999999999999999999999999999      3334   456999999999999999999999999987643    3


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (712)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (712)
                      ...+.+|+++|.+....|++.-|..+|+-++.        +.+..+.++++||.+-.+.|+.++|..++..|-..     
T Consensus       392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~-----  458 (478)
T KOG1129|consen  392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV-----  458 (478)
T ss_pred             chhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-----
Confidence            45578999999999999999999999998876        34456789999999999999999999999999988     


Q ss_pred             CCCChhhHHHHHHHHHH
Q 005139          635 GPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       635 ~~~~p~~~~~~~~La~~  651 (712)
                         .|+..+..+||+.+
T Consensus       459 ---~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  459 ---MPDMAEVTTNLQFM  472 (478)
T ss_pred             ---CccccccccceeEE
Confidence               88877777777643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.78  E-value=1.8e-14  Score=170.42  Aligned_cols=405  Identities=15%  Similarity=0.068  Sum_probs=284.4

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (712)
                      ....+...+..+...|+ +.+|+..+..+-          +.......+...+..+...|++..+..++..+ ....   
T Consensus       340 ~~~lh~raa~~~~~~g~-~~~Al~~a~~a~----------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~---  404 (903)
T PRK04841        340 LPELHRAAAEAWLAQGF-PSEAIHHALAAG----------DAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEV---  404 (903)
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHHCC----------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHH---
Confidence            34555556666666775 777776554431          11334555666788888889998877777654 1110   


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                      ...++.    .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++.
T Consensus       405 ~~~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  480 (903)
T PRK04841        405 LLENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA  480 (903)
T ss_pred             HhcCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            112222    2456778888999999999999988766432110111 12345556688899999999999999999987


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      ..+..   .......++..+|.++...|++++|..++.+++......+.......++..+|.++...|++++|..+++++
T Consensus       481 ~~~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  557 (903)
T PRK04841        481 ELPLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA  557 (903)
T ss_pred             cCCCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            53221   223344567889999999999999999999999888776666666778899999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      +.+.....+...+.....+..+|.++...|++++|...+.+++.+.....    ......++..+|.++...|++++|..
T Consensus       558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~  633 (903)
T PRK04841        558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARR  633 (903)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99988765443444455677889999999999999999999999876531    22346677889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHH
Q 005139          539 LLQKALKIYNDAPGQQST-VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN  617 (712)
Q Consensus       539 ~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  617 (712)
                      .+.++..+.... +.... ...........+...|+.+.|..++......    ...........+..+|.++...|+++
T Consensus       634 ~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~  708 (903)
T PRK04841        634 YLNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFD  708 (903)
T ss_pred             HHHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHH
Confidence            999998876653 21111 1111111234455678999988887665431    01111112234567899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       618 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +|..++++++...+....  ....+.++..+|.+|...|+
T Consensus       709 ~A~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        709 EAEIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             HHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCC
Confidence            999999999998544321  23445556666666666665

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.77  E-value=6.4e-15  Score=174.23  Aligned_cols=411  Identities=13%  Similarity=-0.003  Sum_probs=289.6

Q ss_pred             ccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005139          197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC  276 (712)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~  276 (712)
                      +...|.+..++ .+.....+.+.....+...+..+...|+ +..+..++... ....    ...++.   .....+.++.
T Consensus       351 ~~~~g~~~~Al-~~a~~a~d~~~~~~ll~~~a~~l~~~g~-~~~l~~~l~~l-p~~~----~~~~~~---l~~~~a~~~~  420 (903)
T PRK04841        351 WLAQGFPSEAI-HHALAAGDAQLLRDILLQHGWSLFNQGE-LSLLEECLNAL-PWEV----LLENPR---LVLLQAWLAQ  420 (903)
T ss_pred             HHHCCCHHHHH-HHHHHCCCHHHHHHHHHHhHHHHHhcCC-hHHHHHHHHhC-CHHH----HhcCcc---hHHHHHHHHH
Confidence            44455555444 2222334445556667777777888876 77655554432 1110    011122   3345688888


Q ss_pred             HcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005139          277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL  356 (712)
Q Consensus       277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  356 (712)
                      ..|++++|..++..+............+.....+...++.++...|++++|..++++++.....   .+......++..+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~l  497 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVL  497 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHH
Confidence            9999999999999887654221111122223445667889999999999999999999875211   1112244567889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--ChhHHHH
Q 005139          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ--DAEVASV  434 (712)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~  434 (712)
                      |.++...|++++|..++++++......+..  .....++..+|.++...|++++|..++.+++......+.  .+....+
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  575 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQHDVY--HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL  575 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            999999999999999999999988766532  333557788999999999999999999999988766432  2334455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      +..+|.++...|++++|...+.+++.+.....   ......++..+|.++...|++++|...+.++..+....  +....
T Consensus       576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--~~~~~  650 (903)
T PRK04841        576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--RYHSD  650 (903)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccHh
Confidence            67889999999999999999999999876543   23456677889999999999999999999999886552  11111


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (712)
                      ............+...|+.+.|..++......  .. +........+..++.++...|++++|...+++++...+..+..
T Consensus       651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~  727 (903)
T PRK04841        651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM  727 (903)
T ss_pred             HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence            11111111234556688999998887665431  11 1111222345678999999999999999999999987776643


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                        ...+.++..+|.++...|+.++|..++.+|+++...
T Consensus       728 --~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        728 --SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence              345678889999999999999999999999998643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.75  E-value=2.5e-15  Score=142.12  Aligned_cols=324  Identities=15%  Similarity=0.134  Sum_probs=250.8

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139          214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (712)
Q Consensus       214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~  293 (712)
                      ...+|..+.-.+.+|..++..|+ +..|+..|..|++..         |....+++..|.+|..+|+-.-|+.-+.++++
T Consensus        31 ~~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~d---------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   31 STASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGD---------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCC---------chhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            34567888899999999999997 999999999998643         66788899999999999999999999999999


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHHhCCH
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-------DPRVGETCRYLAEAHVQALQF  366 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~  366 (712)
                      +.     ++    ...+....|.++..+|.+++|..-|.+++..........       .......+......++..|++
T Consensus       101 lK-----pD----F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~  171 (504)
T KOG0624|consen  101 LK-----PD----FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC  171 (504)
T ss_pred             cC-----cc----HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence            86     33    334578899999999999999999999987621100000       001122333445556678899


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 005139          367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (712)
Q Consensus       367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (712)
                      ..|+.+....+++.        ++.+..+...+.+|...|+...|+.-+..+.+      ...+....++.++.+++..|
T Consensus       172 ~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask------Ls~DnTe~~ykis~L~Y~vg  237 (504)
T KOG0624|consen  172 QNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASK------LSQDNTEGHYKISQLLYTVG  237 (504)
T ss_pred             hhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh------ccccchHHHHHHHHHHHhhh
Confidence            99999999999876        34466788899999999999999999988763      34455678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005139          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL---------ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA  517 (712)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (712)
                      +.+.++...++++++     .++|......|-.|         +.-....++|.++++..++.++.-..     ..+...
T Consensus       238 d~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~-----~~~ir~  307 (504)
T KOG0624|consen  238 DAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE-----ETMIRY  307 (504)
T ss_pred             hHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc-----ccceee
Confidence            999999999999998     22222222222222         23345667888888888887766322     123344


Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .....+..|+...|++-+|+..+.+++.+.++.       +.++...+.+|+....|+.|+.-|++|.+.
T Consensus       308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d-------v~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  308 NGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD-------VQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeeheeeecccccCCHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            556678889999999999999999999886654       578999999999999999999999999885

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.9e-14  Score=139.59  Aligned_cols=415  Identities=12%  Similarity=0.028  Sum_probs=289.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN-----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~  289 (712)
                      ..++..+....+.... |..|...|..++..-.....           ..+.+.....-+..+.||...++-+.|+..+.
T Consensus        43 yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~  121 (564)
T KOG1174|consen   43 YQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL  121 (564)
T ss_pred             HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence            3344444444444433 66666666666654321110           11223345556678999999999999999887


Q ss_pred             HhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------HhC
Q 005139          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ--------------------------VLG  343 (712)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~~  343 (712)
                      ......      ..|.    ....++..+..-++..++.-.|...+.-+.-                          ...
T Consensus       122 ~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~  191 (564)
T KOG1174|consen  122 QVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVP  191 (564)
T ss_pred             cCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecC
Confidence            765432      1111    2344555555555544444444333222110                          001


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                      +..+....-...+|.++....-+..+..++-.-...++.+        ...+..+|.+++..|++++|+..|+++.    
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~----  259 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTL----  259 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHh----
Confidence            1112221122233444443334444444444333333322        3467889999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                        -.+|......-..|.++...|+++.-..+....+.+        ....+.-|+.-+.+++..+++..|+.+-+++++.
T Consensus       260 --~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~  329 (564)
T KOG1174|consen  260 --CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS  329 (564)
T ss_pred             --hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence              356777777778899999999999888887777776        3344556777788889999999999999999998


Q ss_pred             HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (712)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (712)
                      -         +....++...|.++...|+.++|+-.|+.|..+.+-.       ..+|..|-.+|...|.+.+|.-....
T Consensus       330 ~---------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  330 E---------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             C---------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            3         3346778899999999999999999999999887654       36899999999999999999999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHH-HHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----
Q 005139          584 AISKLRAIGERKSAFFGVALNQMG-LACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----  657 (712)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~lg-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----  657 (712)
                      ++..+..        .+.++..+| .++. .----++|..++++++.+        .|....+...+|.++...|+    
T Consensus       394 ~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~  457 (564)
T KOG1174|consen  394 TIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDI  457 (564)
T ss_pred             HHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchH
Confidence            8887532        346666675 4433 223458999999999999        99999999999999999888    


Q ss_pred             ---hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          658 ---EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       658 ---~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                         .+......|++ .....||.++...+.+.+|. ..|..+|..+|+
T Consensus       458 i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~  503 (564)
T KOG1174|consen  458 IKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCcc
Confidence               34444555554 35789999999999999999 999999999997

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.75  E-value=4.6e-15  Score=141.36  Aligned_cols=344  Identities=16%  Similarity=0.121  Sum_probs=277.1

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      ..-|.-++...++++|+..+.+.+....      +...++..+-.+..+...+|.|++++.+--..+..+...  ++...
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~------~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~   81 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLS------DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDF   81 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHH------HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            3446667788889999998888887642      223356678888899999999999998877777766553  22345


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                      ...++.+++..+....++.+++.+....+.+-..... ...  ......+|..+..++.|+++++.|+.|+.+....++.
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~-~~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~  158 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG-QLG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA  158 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-ccc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence            6788999999999999999999998877765322221 111  2356678999999999999999999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .....++..+|.+|....|+++|+-+..+|.++.....-.+  ......+++.++..+..+|+.-.|.++++++.++.-.
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999988765332  2235667889999999999999999999999999877


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-----SYDSF  581 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~  581 (712)
                         ..+.+..+..+.-+|.+|...|+.+.|..-|+.|....... |+.-....++...+.++....-..+     |+++-
T Consensus       239 ---~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n  314 (518)
T KOG1941|consen  239 ---HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN  314 (518)
T ss_pred             ---hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence               34567778899999999999999999999999999988776 6655555666677777666554444     99999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +++++++..+|.+..  +...+..++.+|..+|.-++-.+.+.++-+.
T Consensus       315 ~r~levA~~IG~K~~--vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  315 TRLLEVASSIGAKLS--VLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHHHHHHHHhhhhHH--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            999999999987753  4578899999999999888888887776654

>PLN03077 Protein ECB2; Provisional

Probab=99.74  E-value=5e-15  Score=172.88  Aligned_cols=427  Identities=13%  Similarity=0.034  Sum_probs=243.4

Q ss_pred             CCcccccccccccCccccccCCC-CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005139          194 ATPMKKRKGKLHKGQDVSEAGLD-KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIA  272 (712)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la  272 (712)
                      ...+...|.+.+|...+...... .+.....+..+...+...+. +..|...+..+++..     ...+   ......+-
T Consensus        58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~-----~~~~---~~~~n~li  128 (857)
T PLN03077         58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-VEEGSRVCSRALSSH-----PSLG---VRLGNAML  128 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC-HHHHHHHHHHHHHcC-----CCCC---chHHHHHH
Confidence            34456667776666444433221 23334445555556666665 888888888777542     1111   23445566


Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK-------------  339 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------  339 (712)
                      ..|.+.|+.+.|...|++...-            ...+|..+...|...|++++|+..|.+.....-             
T Consensus       129 ~~~~~~g~~~~A~~~f~~m~~~------------d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~  196 (857)
T PLN03077        129 SMFVRFGELVHAWYVFGKMPER------------DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT  196 (857)
T ss_pred             HHHHhCCChHHHHHHHhcCCCC------------CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence            7788999999999999876431            122488888999999999999999988754200             


Q ss_pred             ---------------HHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005139          340 ---------------QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (712)
Q Consensus       340 ---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~  404 (712)
                                     ............++..|...|.+.|++++|..+|++...       ++    ..+|+.+...|..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~d----~~s~n~li~~~~~  265 (857)
T PLN03077        197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-------RD----CISWNAMISGYFE  265 (857)
T ss_pred             hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------CC----cchhHHHHHHHHh
Confidence                           000000001123456677788888888888888877532       11    2367788888888


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (712)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (712)
                      .|++++|+..|.+....    +..|+ ..++..+...+...|+.+.|.+++..+...       .......++..|...|
T Consensus       266 ~g~~~eAl~lf~~M~~~----g~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~d~~~~n~Li~~y  333 (857)
T PLN03077        266 NGECLEGLELFFTMREL----SVDPD-LMTITSVISACELLGDERLGREMHGYVVKT-------GFAVDVSVCNSLIQMY  333 (857)
T ss_pred             CCCHHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCccchHHHHHHHHHH
Confidence            88888888888776431    22222 123333334444445555554444444332       0111233444444444


Q ss_pred             HHcCCHHH-------------------------------HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005139          485 NRTGKLRE-------------------------------SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       485 ~~~g~~~~-------------------------------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                      .+.|++++                               |+.+|++.....-       .|+ ..++..+-..+...|++
T Consensus       334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-------~Pd-~~t~~~ll~a~~~~g~~  405 (857)
T PLN03077        334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-------SPD-EITIASVLSACACLGDL  405 (857)
T ss_pred             HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------CCC-ceeHHHHHHHHhccchH
Confidence            44454444                               4444444433210       011 11233333344444555


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005139          534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR  613 (712)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~  613 (712)
                      ++|.+++..+.+.     |..+. ..++..|...|.+.|++++|.+.|++..+       .+    ..+|..+...|.+.
T Consensus       406 ~~a~~l~~~~~~~-----g~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~vs~~~mi~~~~~~  468 (857)
T PLN03077        406 DVGVKLHELAERK-----GLISY-VVVANALIEMYSKCKCIDKALEVFHNIPE-------KD----VISWTSIIAGLRLN  468 (857)
T ss_pred             HHHHHHHHHHHHh-----CCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------CC----eeeHHHHHHHHHHC
Confidence            5555544444332     11111 23556677788888888888887776421       11    24678888888889


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhhHH----------------------------------HHHHHHHHHHHccc--
Q 005139          614 YSINEAVELFEEARSILEQECGPYHPDTLG----------------------------------VYSNLAGTYDAIGR--  657 (712)
Q Consensus       614 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~----------------------------------~~~~La~~~~~~g~--  657 (712)
                      |++++|+.+|++.+.-    .   .|+...                                  ++..|...|.+.|+  
T Consensus       469 g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~  541 (857)
T PLN03077        469 NRCFEALIFFRQMLLT----L---KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN  541 (857)
T ss_pred             CCHHHHHHHHHHHHhC----C---CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence            9999999988887531    1   232221                                  11223355555665  


Q ss_pred             --hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005139          658 --EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  698 (712)
Q Consensus       658 --~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~  698 (712)
                        .+.+... +.+..+|..+...|.+.|+.++|. +.|+++.+
T Consensus       542 ~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~-~lf~~M~~  582 (857)
T PLN03077        542 YAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAV-ELFNRMVE  582 (857)
T ss_pred             HHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence              2222222 344557788888888888888888 88887765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.73  E-value=2.2e-17  Score=166.43  Aligned_cols=266  Identities=20%  Similarity=0.161  Sum_probs=113.7

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      .+|.+++..|++++|++++.+.+....   ++.+    ...|..+|.+....++++.|+..|++++..        ++..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~   77 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc---cccc----cccccccccccccccccccccccccccccc--------cccc
Confidence            569999999999999999976654320   1222    235888999999999999999999999887        3445


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ...+..++.+ ...+++++|..++.++.+..+..         ..+..+..++...++++++...+.++..    ....+
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~  143 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAP  143 (280)
T ss_dssp             --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred             cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCC
Confidence            5566677777 78999999999998887654321         1355667788999999999999988653    12234


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      .....+..+|.++...|++++|+..|+++++.        .|....+...++.++...|+++++...+.........   
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---  212 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---  212 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---
Confidence            56778899999999999999999999999999        8888889999999999999999998888888777422   


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                            ....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|..++.+++...
T Consensus       213 ------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  213 ------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             ------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred             ------HHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence                  23357788999999999999999999999876554       3577899999999999999999999988754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=9.1e-17  Score=161.91  Aligned_cols=267  Identities=21%  Similarity=0.213  Sum_probs=112.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (712)
                      ..+|.++...|++++|+..+.+.+....      +|.....|..+|.+....++++.|+..|++++...+...       
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-------   78 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-------   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc-------
Confidence            4679999999999999999977654421      245667888899999999999999999999998765432       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                       ..+..++.+ ...+++++|+.++.++....       .....+..+..++...++++++...+.++...      ...+
T Consensus        79 -~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~  143 (280)
T PF13429_consen   79 -QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAP  143 (280)
T ss_dssp             ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T---
T ss_pred             -ccccccccc-cccccccccccccccccccc-------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCC
Confidence             245566666 68999999999998776321       12344555677889999999999999997753      1135


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      .....+..+|.++...|++++|+.+|++++++         .|....+...++.++...|+++++...+.......+..+
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~  214 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL---------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP  214 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence            66788999999999999999999999999999         444566788899999999999999998888877765442


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  630 (712)
                             ..+..+|.+|..+|++++|+.+|++++..        .+....++..+|.++...|+.++|..++++++...
T Consensus       215 -------~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  215 -------DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             -------CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred             -------HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence                   25667899999999999999999999875        23334788899999999999999999999988753

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=1.2e-14  Score=154.13  Aligned_cols=316  Identities=13%  Similarity=0.048  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (712)
                      +...+..|...+..|+ ++.|...+.++.+..         |.....+...|.++..+|+++.|..++.++.+..     
T Consensus        84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~---------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----  148 (409)
T TIGR00540        84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHA---------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----  148 (409)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            3455777888888987 999999988876542         2224455667999999999999999999987654     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (712)
                      ++..   +.+....+.++...|+++.|...++..++.        .|....++..++.++...|++++|.+.+.+.++..
T Consensus       149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            3321   123455699999999999999999999888        57777889999999999999999999998888652


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (712)
Q Consensus       381 ~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (712)
                      ..  +  .............-+...+..+++.+.+..+....  ....+.....+..++..+...|++++|+..++++++
T Consensus       218 ~~--~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 LF--D--DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             CC--C--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            11  1  11111111122222233344444445555554211  111123567788899999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH--HHHHHHHHHHHHcccHHHH
Q 005139          461 AFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA--SGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       461 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A  536 (712)
                      .        .|+....  ...........++...++..++++++.         +|..+  ..+..+|.++...|++++|
T Consensus       292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---------~p~~~~~~ll~sLg~l~~~~~~~~~A  354 (409)
T TIGR00540       292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---------VDDKPKCCINRALGQLLMKHGEFIEA  354 (409)
T ss_pred             h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHHHcccHHHH
Confidence            7        4433321  122233334458889999999999887         33334  7788999999999999999


Q ss_pred             HHHHHH--HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          537 IKLLQK--ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       537 ~~~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      .++|++  +++..++.        ..+..+|.++...|+.++|.++|++++...-.+++
T Consensus       355 ~~~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~  405 (409)
T TIGR00540       355 ADAFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD  405 (409)
T ss_pred             HHHHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence            999995  54443322        34568999999999999999999999887655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.72  E-value=2.3e-15  Score=165.69  Aligned_cols=263  Identities=10%  Similarity=-0.032  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---------CCHhHHHHHHHHhh
Q 005139          224 LLKQARELISSG--DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQSI  292 (712)
Q Consensus       224 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~---------g~~~~A~~~~~~al  292 (712)
                      ++..|...+...  +.+++|+.+|++|+++.         |..+.++..+|.+|...         +++++|+..+++++
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            444555444332  12678888888888653         55577788888887644         34899999999999


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF  372 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (712)
                      ++.     |+++.    ++..+|.++...|++++|+.+|++++++        +|....+++.+|.++...|++++|+.+
T Consensus       332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            986     55554    4888999999999999999999999999        788888999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005139          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (712)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (712)
                      +++++++.+....        .+..++.+++..|++++|+..+++++..     .++.....+..+|.++..+|++++|.
T Consensus       395 ~~~Al~l~P~~~~--------~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~  461 (553)
T PRK12370        395 INECLKLDPTRAA--------AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELAR  461 (553)
T ss_pred             HHHHHhcCCCChh--------hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHH
Confidence            9999998765421        3344566677899999999999988632     23555667889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (712)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (712)
                      ..+.+....        .+....+...++..|...|  +.|...+++.++.....         ......++.+|.-.|+
T Consensus       462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~  522 (553)
T PRK12370        462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE  522 (553)
T ss_pred             HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence            999887665        6677778888999998888  48888888877765431         1112337788888888


Q ss_pred             HHHHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALK  545 (712)
Q Consensus       533 ~~~A~~~~~~al~  545 (712)
                      .+.+..+ +++.+
T Consensus       523 ~~~~~~~-~~~~~  534 (553)
T PRK12370        523 AIAEKMW-NKFKN  534 (553)
T ss_pred             hHHHHHH-HHhhc
Confidence            8887776 55544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.9e-14  Score=139.60  Aligned_cols=315  Identities=15%  Similarity=0.075  Sum_probs=254.1

Q ss_pred             HHHHHHHcCCHhHHHHHHHH--hhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          271 IAAIYCSLGQYNEAIPVLEQ--SIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      .+.+.+..++...|...+--  -....     +++    ...+..+|.+++..|++++|+..|+++.-+        +|.
T Consensus       202 ka~Aq~~~~~hs~a~~t~l~le~~~~l-----r~N----vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy  264 (564)
T KOG1174|consen  202 KALAQMFNFKHSDASQTFLMLHDNTTL-----RCN----EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPD  264 (564)
T ss_pred             HHHHHHHhcccchhhhHHHHHHhhccC-----Ccc----HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------Chh
Confidence            34455555666665554432  22222     222    335889999999999999999999999888        788


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                      .....-..|.++...|+++.-..+....+.+......        -|+.-+.+.+...++..|+.+-++++      ...
T Consensus       265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~--------~wfV~~~~l~~~K~~~rAL~~~eK~I------~~~  330 (564)
T KOG1174|consen  265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS--------HWFVHAQLLYDEKKFERALNFVEKCI------DSE  330 (564)
T ss_pred             hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh--------hhhhhhhhhhhhhhHHHHHHHHHHHh------ccC
Confidence            8899999999999999999888887777766543322        36667888889999999999999998      456


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      +....++...|.++...|+.++|+-.|+.|..+        .|....+|..|..+|...|++.+|....+.++..+..  
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~--  400 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN--  400 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc--
Confidence            667788899999999999999999999999998        8888999999999999999999999999999998655  


Q ss_pred             CCCCChhHHHHHHHHH-HHHH-HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVS-SIYE-SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                             .+.++..+| .++. .----++|.+++++++.+.|..       ..+...++.++...|.++.++.++++++.
T Consensus       401 -------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~  466 (564)
T KOG1174|consen  401 -------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-------TPAVNLIAELCQVEGPTKDIIKLLEKHLI  466 (564)
T ss_pred             -------chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-------HHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence                   466777775 4443 3334588999999999876544       34667899999999999999999999998


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .+.         ....+..||.++...+.+++|.++|..|+.+        +|..-.++..|-.+-....+
T Consensus       467 ~~~---------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------dP~~~~sl~Gl~~lEK~~~~  520 (564)
T KOG1174|consen  467 IFP---------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------DPKSKRTLRGLRLLEKSDDE  520 (564)
T ss_pred             hcc---------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHhccCC
Confidence            632         2367889999999999999999999999999        99888888777666554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=1.5e-14  Score=147.70  Aligned_cols=374  Identities=16%  Similarity=0.081  Sum_probs=207.4

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      .+....+.-..++.-+..+...+- ++-|+..|..+|+.+         |..-..+...+..--.-|..+.-..+|++++
T Consensus       508 igvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvf---------p~k~slWlra~~~ek~hgt~Esl~Allqkav  577 (913)
T KOG0495|consen  508 IGVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVF---------PCKKSLWLRAAMFEKSHGTRESLEALLQKAV  577 (913)
T ss_pred             hccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344444444555555555555553 555555555555554         1112223333333344455555555666665


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF  372 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  372 (712)
                      ...     +..+.    .|...+..+...|+...|...+.++++.        +|..-.+|..--.+.+...+++.|..+
T Consensus       578 ~~~-----pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~l  640 (913)
T KOG0495|consen  578 EQC-----PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDL  640 (913)
T ss_pred             HhC-----Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHH
Confidence            544     22211    2455555555566666666666666555        444445555555555555666666666


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 005139          373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAG  452 (712)
Q Consensus       373 ~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  452 (712)
                      |.++....+.         ..+|..-+.+...+++.++|+.+++++++      ..|.....|..+|+++..+++.+.|.
T Consensus       641 lakar~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk------~fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  641 LAKARSISGT---------ERVWMKSANLERYLDNVEEALRLLEEALK------SFPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             HHHHhccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHH------hCCchHHHHHHHhHHHHHHHHHHHHH
Confidence            6665543211         12455555555566666666666666652      34445555666666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (712)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (712)
                      ..|...+..        -|.....|..|+.+-...|..-.|...++++.-.         +|.....|.....+-++.|+
T Consensus       706 ~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  706 EAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAGN  768 (913)
T ss_pred             HHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcCC
Confidence            666655555        4555556666666666666666666666655443         23334445555555556666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ  612 (712)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~  612 (712)
                      .+.|...+.+|++-++.. |      ..|..-..+.-+-++-..+++.+++.       .  +.   ..++..+|.++..
T Consensus       769 ~~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DALkkc-------e--~d---phVllaia~lfw~  829 (913)
T KOG0495|consen  769 KEQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDALKKC-------E--HD---PHVLLAIAKLFWS  829 (913)
T ss_pred             HHHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHHHHhc-------c--CC---chhHHHHHHHHHH
Confidence            666666666666655544 1      11111111111222222222222221       1  11   2577888999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHH
Q 005139          613 RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEK  672 (712)
Q Consensus       613 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~  672 (712)
                      ..++++|.++|.+|+.+        +|+.-+++..+-..+...|.       +.......|..-..|
T Consensus       830 e~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W  888 (913)
T KOG0495|consen  830 EKKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW  888 (913)
T ss_pred             HHHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence            99999999999999999        89999999888888888885       334444455544444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.71  E-value=4.2e-14  Score=134.87  Aligned_cols=346  Identities=15%  Similarity=0.152  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (712)
                      +......|..++...+ +.+|+..+.+.+.-....      ......|-.+..+...+|.|++++.+---.+.....   
T Consensus         6 ~k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~---   75 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE---   75 (518)
T ss_pred             hHHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH---
Confidence            3445667778888876 999999999888766443      334556667788889999999998877666655433   


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (712)
                      .++......++.+++..+....++.+++.+-.-.+.+-    +... ..-..+...++.++..++.|+++++.|+.|+.+
T Consensus        76 ~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~  151 (518)
T KOG1941|consen   76 LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY  151 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33334466789999999999999999998887776651    1111 122356677899999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD----AEVASVDCSIGDTYLSLSRYDEAGFAY  455 (712)
Q Consensus       380 ~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (712)
                      .....++  .....++..||.++....++++|+-+..+|..+....+..    .....+++.++..+..+|+.-.|.++.
T Consensus       152 A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C  229 (518)
T KOG1941|consen  152 AHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC  229 (518)
T ss_pred             hhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            9888754  3345578899999999999999999999999888765522    234567889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH
Q 005139          456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ  535 (712)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  535 (712)
                      +++.++.-..+  +.+..+..+..+|.+|...|+.+.|..-|+.|..+....   .+......++...|.++....-..+
T Consensus       230 ~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~---gdrmgqv~al~g~Akc~~~~r~~~k  304 (518)
T KOG1941|consen  230 EEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL---GDRMGQVEALDGAAKCLETLRLQNK  304 (518)
T ss_pred             HHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999988876  478889999999999999999999999999999987764   2344456677777777776555555


Q ss_pred             -----HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          536 -----AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       536 -----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                           |+++-.+++++.... |.......+...++.+|..+|.-++-...+.++-+..
T Consensus       305 ~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  305 ICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             ccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence                 999999999998887 8877778889999999999998888777777766543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.71  E-value=8.5e-15  Score=156.16  Aligned_cols=423  Identities=16%  Similarity=0.097  Sum_probs=297.8

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHH
Q 005139          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (712)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~  287 (712)
                      ..+..+...++..+.++..+|.+|....| ...|..+|++|.++.         +..+.+...++..|....+++.|...
T Consensus       479 ~ali~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  479 HALIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD---------ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccccHHHHHHH
Confidence            44555566667777777777777766654 666777777666542         22344555567777777777777766


Q ss_pred             HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHH
Q 005139          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS  367 (712)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  367 (712)
                      .-.+-+...       .......|..+|..|...+++..|+..|+.++..        +|....+|..+|.+|...|++.
T Consensus       549 ~l~~~qka~-------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~  613 (1238)
T KOG1127|consen  549 CLRAAQKAP-------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYS  613 (1238)
T ss_pred             HHHHhhhch-------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCcee
Confidence            444333321       1122334667899999999999999999999988        7999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHcC
Q 005139          368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLS  446 (712)
Q Consensus       368 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g  446 (712)
                      .|++.|.++..+.|..        ....+..+.+....|+|.+|+..+...+..... ..-....+.++..++..+...|
T Consensus       614 ~AlKvF~kAs~LrP~s--------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g  685 (1238)
T KOG1127|consen  614 HALKVFTKASLLRPLS--------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG  685 (1238)
T ss_pred             hHHHhhhhhHhcCcHh--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            9999999998876543        235677888999999999999999887754432 1223456778888888888899


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----------------------cCCH------HHHHHHH
Q 005139          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-----------------------TGKL------RESKSYC  497 (712)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~  497 (712)
                      -+.+|..+++++++.+.-............|..++....-                       ++..      --|.+++
T Consensus       686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~  765 (1238)
T KOG1127|consen  686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG  765 (1238)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence            9999999999998876654322212222333333332211                       1111      1122333


Q ss_pred             HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005139          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (712)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (712)
                      -..+.+.          ..+..|++||.-|+.        +.+...|+.++.+++++..+..       ..|..||.+ -
T Consensus       766 ~~hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~-------~~WnaLGVl-s  827 (1238)
T KOG1127|consen  766 IAHLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE-------GLWNALGVL-S  827 (1238)
T ss_pred             hHHHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH-------HHHHHHHHh-h
Confidence            3333321          124568888887776        2344589999999999987662       467777777 5


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (712)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La  649 (712)
                      ..|++.-|..+|-+++..        .+.....|.++|.++.+..+++.|...|.++..+        +|.+...+...|
T Consensus       828 g~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~A  891 (1238)
T KOG1127|consen  828 GIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEA  891 (1238)
T ss_pred             ccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHH
Confidence            668888888888888764        2334567888888888888888888888888887        888888888888


Q ss_pred             HHHHHccc--------------------------------------------------------hhhhCCCChhHHHHHH
Q 005139          650 GTYDAIGR--------------------------------------------------------EEKLGTANPDVDDEKR  673 (712)
Q Consensus       650 ~~~~~~g~--------------------------------------------------------~~~l~~~~p~~~~~~~  673 (712)
                      .+....|+                                                        ...+-..+|+...++.
T Consensus       892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~  971 (1238)
T KOG1127|consen  892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA  971 (1238)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence            77777775                                                        2333467888888899


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHH
Q 005139          674 RLAELLKEAGRVRSRKAQSLETLLD  698 (712)
Q Consensus       674 ~la~~~~~~g~~~~A~~~~l~~~l~  698 (712)
                      ..|.++..++.+++|. ....+++.
T Consensus       972 ~~gstlEhL~ey~~a~-ela~Rlig  995 (1238)
T KOG1127|consen  972 ANGSTLEHLEEYRAAL-ELATRLIG  995 (1238)
T ss_pred             HHHhHHHHHHHHHHHH-HHHHHHHH
Confidence            9999999999999988 77666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.71  E-value=4.4e-13  Score=137.72  Aligned_cols=423  Identities=16%  Similarity=0.135  Sum_probs=209.6

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (712)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~  294 (712)
                      ..+|+.++.+...|..+...|+ -++|..+...++...         +....|++.+|.++....+|++|+.+|+.|+.+
T Consensus        35 ~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~d---------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   35 KKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRND---------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             HhCCccchhHHhccchhhcccc-hHHHHHHHHHHhccC---------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            3455555555555555555554 455555544444311         222334555555555555555555555555544


Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005139          295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQ  374 (712)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  374 (712)
                      .     +++    ..+|..++.+..++++++.....-.+.+++        .|.....|...+..+...|++..|...++
T Consensus       105 ~-----~dN----~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~  167 (700)
T KOG1156|consen  105 E-----KDN----LQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILE  167 (700)
T ss_pred             C-----CCc----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3     221    123455555555555555544444444444        34444455555555555555555555555


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 005139          375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA  454 (712)
Q Consensus       375 ~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  454 (712)
                      ...................+......+....|.+++|++++..--      +...+........|.++..++++++|...
T Consensus       168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e------~~i~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE------KQIVDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh------hHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            544444322222333334444444455555555555555443221      11122223334455566666666666666


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH----HH---HHHH
Q 005139          455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT----DV---SSIY  527 (712)
Q Consensus       455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~l---a~~~  527 (712)
                      |...+..        .|+....+..+-.++.   .+....+..........+.++....|.......    ++   -.-|
T Consensus       242 y~~Ll~r--------nPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky  310 (700)
T KOG1156|consen  242 YRRLLER--------NPDNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY  310 (700)
T ss_pred             HHHHHhh--------CchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence            6665555        5555555555544444   222222222222222222111111110000000    00   0000


Q ss_pred             H----Hc-------------ccHHHHHHHHHHHHHHHHhCCC--------------CCCcHHHHHHHHHHHHHHcCCHHH
Q 005139          528 E----SM-------------NELEQAIKLLQKALKIYNDAPG--------------QQSTVAGIEAQMGVMYYMLGNYSD  576 (712)
Q Consensus       528 ~----~~-------------g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~  576 (712)
                      .    ..             .+..+. .++++.+..+....+              .+..+.+.++.++.-+...|+++.
T Consensus       311 L~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~  389 (700)
T KOG1156|consen  311 LRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV  389 (700)
T ss_pred             HHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence            0    00             011111 133333322221111              223567788899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH--HHHHHHHH
Q 005139          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS--NLAGTYDA  654 (712)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~--~La~~~~~  654 (712)
                      |..++..|+.        +.|.+...+..-|+++...|++++|..++.++.++        +  +++.+.  .-|.-..+
T Consensus       390 A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D--~aDR~INsKcAKYmLr  451 (700)
T KOG1156|consen  390 ALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------D--TADRAINSKCAKYMLR  451 (700)
T ss_pred             HHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------c--chhHHHHHHHHHHHHH
Confidence            9999999987        45677788999999999999999999999999887        2  222222  23333333


Q ss_pred             ccc----------hhhhCC---CCh-hHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139          655 IGR----------EEKLGT---ANP-DVDDEKR--RLAELLKEAGRVRSRKAQSLETLLDANS  701 (712)
Q Consensus       655 ~g~----------~~~l~~---~~p-~~~~~~~--~la~~~~~~g~~~~A~~~~l~~~l~~~p  701 (712)
                      ..+          +..-+.   .+- +..-.|+  .=|..|.++|++-.|. +.+..+-....
T Consensus       452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~k~~~  513 (700)
T KOG1156|consen  452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIEKHYK  513 (700)
T ss_pred             ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHHHHHH
Confidence            333          111111   011 1111233  3488999999999888 66665554443

>PRK12370 invasion protein regulator; Provisional

Probab=99.70  E-value=6e-15  Score=162.38  Aligned_cols=249  Identities=13%  Similarity=0.030  Sum_probs=194.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005139          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (712)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (712)
                      +.+++|+.+|++++      ..+|..+.++..+|.+|...         +++++|+..+++++++        .|....+
T Consensus       275 ~~~~~A~~~~~~Al------~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a  340 (553)
T PRK12370        275 YSLQQALKLLTQCV------NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA  340 (553)
T ss_pred             HHHHHHHHHHHHHH------hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence            45789999999998      45677788888888877643         3489999999999998        8888899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005139          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (712)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (712)
                      +..+|.++...|++++|+.+|++++++         .|..+.+++.+|.++...|++++|+..+++++++.+...     
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            999999999999999999999999999         455577899999999999999999999999999866542     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                        ..+..++.+++..|++++|+..+++++...       ++....++..+|.++..+|++++|...+++....       
T Consensus       407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-------  470 (553)
T PRK12370        407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-------  470 (553)
T ss_pred             --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence              233445666778999999999999987641       1223467888999999999999999999887665       


Q ss_pred             CChhhHHHHHHHHHHHHHccc-----hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139          637 YHPDTLGVYSNLAGTYDAIGR-----EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  701 (712)
Q Consensus       637 ~~p~~~~~~~~La~~~~~~g~-----~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p  701 (712)
                       .|....+...++..|...|+     .+.+.........-...++.+|.-.|+.+.+. .. +++.+.+.
T Consensus       471 -~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~  537 (553)
T PRK12370        471 -EITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEK-MW-NKFKNEDN  537 (553)
T ss_pred             -cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHH-HH-HHhhccch
Confidence             77778888899999888887     11121111111112334788899999988887 44 66655433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.70  E-value=1.5e-14  Score=151.72  Aligned_cols=341  Identities=16%  Similarity=0.107  Sum_probs=239.3

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005139          216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (712)
Q Consensus       216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~  295 (712)
                      .+|+.+..+..+|..+...|+ ++.|...+.++......      ...........+.++...|++++|...++++++..
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~   73 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAA------RATERERAHVEALSAWIAGDLPKALALLEQLLDDY   73 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            378999999999999999986 89988888877765522      12334556678999999999999999999999875


Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (712)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (712)
                           |.+..    ++.. +..+...|++..+.....+++..    ....+|....++..+|.++...|++++|+..+++
T Consensus        74 -----P~~~~----a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  139 (355)
T cd05804          74 -----PRDLL----ALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR  139 (355)
T ss_pred             -----CCcHH----HHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                 44432    2333 55666666666555555555543    2345677888888999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (712)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (712)
                      ++++.+..        ..++..+|.++...|++++|+.++.+++.....  ........+..+|.++...|++++|+..|
T Consensus       140 al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         140 ALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99987654        236888999999999999999999998754321  12233456778999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005139          456 QKALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                      ++++....     ........  ...+...+...|....+..+ +.+........+.   +.........+.++...|+.
T Consensus       210 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~  280 (355)
T cd05804         210 DTHIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDK  280 (355)
T ss_pred             HHHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCH
Confidence            99864411     01111111  11223333444543333332 2222221111011   11222234688888999999


Q ss_pred             HHHHHHHHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          534 EQAIKLLQKALKIYNDA--PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       534 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                      ++|...++.........  .+.......+....+.++...|++++|...+..++.+...+|+.+-
T Consensus       281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~a  345 (355)
T cd05804         281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHA  345 (355)
T ss_pred             HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            99999999988776552  0222233456678899999999999999999999999988887753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.70  E-value=2.8e-14  Score=149.22  Aligned_cols=373  Identities=17%  Similarity=0.122  Sum_probs=268.5

Q ss_pred             ccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC
Q 005139          201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ  280 (712)
Q Consensus       201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~  280 (712)
                      |.|..+.+.|.+...-.-.....|..++..+...|. -..|+.+.+..+..-+      ..++....+..-..|+.+.+.
T Consensus       337 g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~  409 (799)
T KOG4162|consen  337 GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKL  409 (799)
T ss_pred             HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhh
Confidence            444455556666666666777888888888888887 5777777776654321      112234444445566778899


Q ss_pred             HhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-----------QLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      +++++.+..+++.......+    .....++..+|.+|..+-           ...+++..+++|++.        +|..
T Consensus       410 ~eegldYA~kai~~~~~~~~----~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~d  477 (799)
T KOG4162|consen  410 VEEGLDYAQKAISLLGGQRS----HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTD  477 (799)
T ss_pred             hhhHHHHHHHHHHHhhhhhh----hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCC
Confidence            99999999999986532222    223345777787776532           234566667776666        4555


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ..+.++++.-|..+++.+.|..+.++++++.+...       +.+|..++.++...+++.+|+....-++.....+-   
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~---  547 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH---  547 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh---
Confidence            68899999999999999999999999999854433       45899999999999999999999998885443210   


Q ss_pred             hHHHHHHHHHHHHHHcCCHH-------------------------------------------HHHHHHHHHHHHHHHhc
Q 005139          430 EVASVDCSIGDTYLSLSRYD-------------------------------------------EAGFAYQKALTAFKTNK  466 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~-------------------------------------------~A~~~~~~al~~~~~~~  466 (712)
                         ........+-...++.+                                           +|...++++..+.....
T Consensus       548 ---~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~  624 (799)
T KOG4162|consen  548 ---VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL  624 (799)
T ss_pred             ---hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence               11111111222233333                                           44444444443332110


Q ss_pred             ----------------CCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Q 005139          467 ----------------GENH--PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE  528 (712)
Q Consensus       467 ----------------~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  528 (712)
                                      ++++  ......|...+..+...+..++|..++.++-.+         .+..+..|+..|.++.
T Consensus       625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---------~~l~~~~~~~~G~~~~  695 (799)
T KOG4162|consen  625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---------DPLSASVYYLRGLLLE  695 (799)
T ss_pred             hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---------chhhHHHHHHhhHHHH
Confidence                            0011  112345667788889999999999999999888         4557889999999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005139          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--SFKNAISKLRAIGERKSAFFGVALNQM  606 (712)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (712)
                      ..|++.+|.+.|..|+.+.|+.+       .+...+|.++...|+..-|..  ++..++++        .+....+|+.+
T Consensus       696 ~~~~~~EA~~af~~Al~ldP~hv-------~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~L  760 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVALALDPDHV-------PSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYL  760 (799)
T ss_pred             HHHhhHHHHHHHHHHHhcCCCCc-------HHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHH
Confidence            99999999999999999977653       467789999999999888887  89999886        34455899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHH
Q 005139          607 GLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       607 g~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      |.++..+|+.++|.++|..|+++
T Consensus       761 G~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  761 GEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHccchHHHHHHHHHHHhh
Confidence            99999999999999999999998

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.69  E-value=8.1e-14  Score=146.23  Aligned_cols=338  Identities=11%  Similarity=0.011  Sum_probs=234.3

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       261 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      +|+.+.++..+|.++...|+++.|...+.++......     ... ........+.++...|++++|...++++++.   
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RAT-ERERAHVEALSAWIAGDLPKALALLEQLLDD---   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence            3667889999999999999999998888888876532     111 2234667899999999999999999999987   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                           +|....++.. +..+...|++..+.....+++...    .+..+.....+..+|.++...|++++|+..+++++.
T Consensus        73 -----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  142 (355)
T cd05804          73 -----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE  142 (355)
T ss_pred             -----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                 4555555554 666666666666665555555441    223334455677889999999999999999999985


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                      .      .|....++..+|.++...|++++|+.++++++.....    +.......+..+|.++...|++++|+.+|+++
T Consensus       143 ~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         143 L------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             h------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3      3444677889999999999999999999999987321    12223456778999999999999999999998


Q ss_pred             HHHHhcCCCCCCChhHHHH--HHHHHHHHHHcccHHHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 005139          501 LRIYEKPVPGVPPEEIASG--LTDVSSIYESMNELEQAIKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDS  577 (712)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A  577 (712)
                      +.....      .......  ...+...+...|....+..+ +.+....... .+  +.........+.++...|+.++|
T Consensus       213 ~~~~~~------~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a  283 (355)
T cd05804         213 IAPSAE------SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDAL  283 (355)
T ss_pred             hccccC------CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHH
Confidence            654211      1111111  11223333344433333322 2222222211 12  21112223678888899999999


Q ss_pred             HHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          578 YDSFKNAISKLRAIG-ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       578 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                      ...++.......... .........+....+.++...|++++|++.+..++.+...+.|.
T Consensus       284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            999998887765521 01112234567788899999999999999999999998777664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.68  E-value=6.1e-13  Score=136.25  Aligned_cols=296  Identities=12%  Similarity=0.005  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ...|...+.+-...|..++-..++++++...++...        .|...+..++..|+...|...+.+++.      ..|
T Consensus       550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~--------lwlM~ake~w~agdv~~ar~il~~af~------~~p  615 (913)
T KOG0495|consen  550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI--------LWLMYAKEKWKAGDVPAARVILDQAFE------ANP  615 (913)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh--------HHHHHHHHHHhcCCcHHHHHHHHHHHH------hCC
Confidence            334444444444444444444444554444443321        344445555555666666666655552      223


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      ..-.++..--.+.+...+++.|..+|.++...         .....+|..-+.+...+++.++|+.+++++++.+     
T Consensus       616 nseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-----  681 (913)
T KOG0495|consen  616 NSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-----  681 (913)
T ss_pred             CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence            33344444445555566666666666665543         2234555566666666666666666666666663     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                          |.....|..+|+++..+++.+.|...|...+..++...       -.|..|+.+-.+.|+.-.|...++++.-.  
T Consensus       682 ----p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-------pLWllLakleEk~~~~~rAR~ildrarlk--  748 (913)
T KOG0495|consen  682 ----PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-------PLWLLLAKLEEKDGQLVRARSILDRARLK--  748 (913)
T ss_pred             ----CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-------hHHHHHHHHHHHhcchhhHHHHHHHHHhc--
Confidence                33455566666666666666666666666666555442       25556666666666666666666665431  


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----hhhhCCCC
Q 005139          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----EEKLGTAN  665 (712)
Q Consensus       590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----~~~l~~~~  665 (712)
                            .+.....|...-.+-.+.|+.++|..+..+|++-        .|.....|..-..+.-.-++    ..++ ...
T Consensus       749 ------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--------cp~sg~LWaEaI~le~~~~rkTks~DAL-kkc  813 (913)
T KOG0495|consen  749 ------NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--------CPSSGLLWAEAIWLEPRPQRKTKSIDAL-KKC  813 (913)
T ss_pred             ------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccchhHHHHHHhccCcccchHHHHHH-Hhc
Confidence                  1222344544555556667777777776666664        33322222111111111111    1111 111


Q ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          666 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       666 p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ..++.++..+|.++....++++|. ..|+++++..|+
T Consensus       814 e~dphVllaia~lfw~e~k~~kar-~Wf~Ravk~d~d  849 (913)
T KOG0495|consen  814 EHDPHVLLAIAKLFWSEKKIEKAR-EWFERAVKKDPD  849 (913)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHccCCc
Confidence            223344566677777777777777 777777777665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=1e-14  Score=147.17  Aligned_cols=221  Identities=18%  Similarity=0.088  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005139          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (712)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~  317 (712)
                      .+.++..+.+++...     .......+..++.+|.+|...|++++|+..|++++++.     |+++.    +++.+|.+
T Consensus        42 ~e~~i~~~~~~l~~~-----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~~----a~~~lg~~  107 (296)
T PRK11189         42 QEVILARLNQILASR-----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMAD----AYNYLGIY  107 (296)
T ss_pred             HHHHHHHHHHHHccc-----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHH----HHHHHHHH
Confidence            577777777777532     12234557889999999999999999999999999986     55543    59999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (712)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (712)
                      +...|++++|+..|++++++        +|....++.++|.++...|++++|+..+++++.+.+...     .    ...
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~~  170 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RAL  170 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HHH
Confidence            99999999999999999998        688889999999999999999999999999998765432     1    111


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHhcCCCCHHHH
Q 005139          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF---KTNKGENHPAVA  474 (712)
Q Consensus       398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~  474 (712)
                      ...+....+++++|+..|.+++..     .++..   + ..+.++...|++..+ ..+..+.+..   .+.    .+...
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~~  236 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYEK-----LDKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERLC  236 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhh-----CCccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHHH
Confidence            122345678999999999776521     11111   1 134555567776544 2333333211   111    45667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          475 SVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      .+|+.+|.++...|++++|+.+|++++.+
T Consensus       237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        237 ETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999988

>TIGR00540 hemY_coli hemY protein

Probab=99.68  E-value=7.2e-14  Score=148.19  Aligned_cols=315  Identities=14%  Similarity=0.062  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +......|.+....|+++.|.+.+.++.+..     +....    .+...|.++..+|+++.|..++.++.+.       
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-----~~~~~----~~llaA~aa~~~g~~~~A~~~l~~a~~~-------  147 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA-----AEPVL----NLIKAAEAAQQRGDEARANQHLEEAAEL-------  147 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            3344556888899999999999999987764     32222    3667899999999999999999999776       


Q ss_pred             CChhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          345 TDPRVG-ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       345 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                       .|... .+....+.++...|+++.|...+++.++..|+..        .++..++.++...|++++|++.+.+..+.. 
T Consensus       148 -~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~--------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-  217 (409)
T TIGR00540       148 -AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK--------EVLKLAEEAYIRSGAWQALDDIIDNMAKAG-  217 (409)
T ss_pred             -CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence             23322 2344569999999999999999999998875543        378899999999999999999998776431 


Q ss_pred             hCCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          424 ANDQDAE-VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       424 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                        ...+. ..........-+...+..+++...+.++......    ..+.....+..++..+...|++++|...++++++
T Consensus       218 --~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 --LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence              11222 2122222222223444445555566666654111    1224678899999999999999999999999999


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      ....      ..... ............++.+.+++.++++++..++.+    . ..++..+|+++++.|++++|.++|+
T Consensus       292 ~~pd------~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~----~-~~ll~sLg~l~~~~~~~~~A~~~le  359 (409)
T TIGR00540       292 KLGD------DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP----K-CCINRALGQLLMKHGEFIEAADAFK  359 (409)
T ss_pred             hCCC------cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh----h-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence            8432      21111 012233333446788899999999887655431    1 2467789999999999999999999


Q ss_pred             H--HHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          583 N--AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       583 ~--al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                      +  +++.       .+. . ..+..+|.++.+.|+.++|.++|++++...-.
T Consensus       360 ~a~a~~~-------~p~-~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~  402 (409)
T TIGR00540       360 NVAACKE-------QLD-A-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLA  402 (409)
T ss_pred             HhHHhhc-------CCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            5  4443       111 1 34558999999999999999999999887533

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.9e-13  Score=128.91  Aligned_cols=271  Identities=18%  Similarity=0.198  Sum_probs=188.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK  307 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  307 (712)
                      |.-++...+ +++|++.|.+.++.         ++....+...||..|.+.|..+.|+.+-+..+.-.     .-.....
T Consensus        42 GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~~qr  106 (389)
T COG2956          42 GLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTFEQR  106 (389)
T ss_pred             HHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCchHHH
Confidence            334444444 78888888877753         25567778888888888888888888877666542     1111224


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                      ..++..||.-|...|-++.|...|....+.        ......++..|..+|....+|++|++..++...+.++.   .
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~  175 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---Y  175 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---c
Confidence            456788888888888888888888876654        22344577778888888888888888877776665443   4


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                      ....+..|..++..+....+++.|+..+.+|+.      .++..+.+-..+|.++...|+|..|++.++.+++-      
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------  243 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ------  243 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence            466777788888888888888888888888873      45566667777888888888888888888887776      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                       ++.....+...|..+|...|+.++.+.++.++.+....          ..+...++.+-....-.+.|..++.+-+...
T Consensus       244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~  312 (389)
T COG2956         244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRRK  312 (389)
T ss_pred             -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC
Confidence             34445667777888888888888888888887776433          2233445555555555666666666555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.68  E-value=7.5e-15  Score=132.42  Aligned_cols=208  Identities=17%  Similarity=0.156  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       306 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      ....+...||.-|...|++..|...+++|++.        +|....+|..+|.+|...|+.+.|.+.|++|+.+.++.++
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd  104 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD  104 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence            35567899999999999999999999999999        8999999999999999999999999999999999988865


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                              ++++.|..++.+|++++|..+|++|+.    .+.-+..+.++.++|.|..+.|+++.|..+|++++++    
T Consensus       105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~----  168 (250)
T COG3063         105 --------VLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL----  168 (250)
T ss_pred             --------hhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence                    799999999999999999999999973    2445567889999999999999999999999999999    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                          .|........++..++..|+|..|..+++.......         ..+..+.....+-...|+-+.|-.+-.+...
T Consensus       169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                888888999999999999999999999998776632         2466677777788889999888887776666


Q ss_pred             HHHhC
Q 005139          546 IYNDA  550 (712)
Q Consensus       546 ~~~~~  550 (712)
                      .+|..
T Consensus       236 ~fP~s  240 (250)
T COG3063         236 LFPYS  240 (250)
T ss_pred             hCCCc
Confidence            65543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.68  E-value=9.5e-15  Score=143.16  Aligned_cols=203  Identities=21%  Similarity=0.190  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ....+..+|.++...|++++|+..+++++..        +|....++..+|.++...|++++|+.++++++...+..   
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---   98 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---   98 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Confidence            3456899999999999999999999999887        56777899999999999999999999999999875432   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (712)
                           ...+..+|.++...|++++|+.+|.+++..    ...+.....+..+|.++...|++++|..++.+++..     
T Consensus        99 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  164 (234)
T TIGR02521        99 -----GDVLNNYGTFLCQQGKYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-----  164 (234)
T ss_pred             -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence                 236888999999999999999999999752    123344567888999999999999999999999987     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                         .|.....+..+|.++...|++++|..++++++...         +.....+..++.++...|+.++|..+.+.+...
T Consensus       165 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       165 ---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY---------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             ---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence               55567788999999999999999999999999882         112455668899999999999999988776554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=1.1e-14  Score=146.77  Aligned_cols=243  Identities=13%  Similarity=0.025  Sum_probs=177.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139          364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (712)
Q Consensus       364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (712)
                      +..+.++..+.+++...+.    .....+..++.+|.+|...|++++|+..|.+++.      ..|....+++.+|.++.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~----~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------l~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASRDL----TDEERAQLHYERGVLYDSLGLRALARNDFSQALA------LRPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHccccC----CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHH
Confidence            4567778888877754321    2234466899999999999999999999999984      46677889999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (712)
                      ..|++++|+..|++++++        .|....++.++|.++...|++++|+..|++++++...      ++. ...|   
T Consensus       110 ~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~------~~~-~~~~---  171 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN------DPY-RALW---  171 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHH-HHHH---
Confidence            999999999999999998        8888899999999999999999999999999998322      221 1122   


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (712)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (712)
                      ..+....+++++|+..+.++......     .    .+ ..+.++...|++.++ ..++.+...+.... ...+....+|
T Consensus       172 ~~l~~~~~~~~~A~~~l~~~~~~~~~-----~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~  239 (296)
T PRK11189        172 LYLAESKLDPKQAKENLKQRYEKLDK-----E----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETY  239 (296)
T ss_pred             HHHHHccCCHHHHHHHHHHHHhhCCc-----c----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHH
Confidence            22345578899999999886643211     1    11 134555567776554 24444432211000 0013356799


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHH
Q 005139          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDA  654 (712)
Q Consensus       604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~  654 (712)
                      +.+|.++...|++++|+.+|++|+.+        +| +.+...+.+..+...
T Consensus       240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~--------~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        240 FYLAKYYLSLGDLDEAAALFKLALAN--------NVYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999998        54 666655555544443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.67  E-value=9.9e-15  Score=131.65  Aligned_cols=202  Identities=16%  Similarity=0.156  Sum_probs=176.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ......+...||.-|+..|++..|..-+++|+++         .|....+|..+|.+|...|+.+.|.+.|++|+.+.++
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~  101 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence            4456778999999999999999999999999999         5667889999999999999999999999999999887


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .       ..++++.|..++.+|++++|...|++|+.      ++.-.....++.++|.|..+.|+++.|.++|++++++
T Consensus       102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             c-------cchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            6       36899999999999999999999999987      3333445689999999999999999999999999999


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          630 LEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                              +|+...+...++..+...|+       .+.+....+-.++.+.....+-...|+...|. ++=..+-...|.
T Consensus       169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~-~Y~~qL~r~fP~  239 (250)
T COG3063         169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQLQRLFPY  239 (250)
T ss_pred             --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence                    99999999999999999999       44444444566777878888889999999888 777777777876

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=6.6e-14  Score=147.63  Aligned_cols=306  Identities=13%  Similarity=0.056  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (712)
                      +...+..|...+..|+ +++|.....++-+.       .+.|  ...+...+.+....|+++.|..+|.++.+..     
T Consensus        84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~-------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----  148 (398)
T PRK10747         84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADH-------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA-----  148 (398)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc-------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence            3445677777888886 89888666654331       1122  2234444666699999999999999998764     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH  380 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  380 (712)
                      ++..   .......+.++...|+++.|+..++++++.        .|....++..++.+|...|++++|+.++.+..+..
T Consensus       149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            3322   122445589999999999999999999888        67778899999999999999999999998887654


Q ss_pred             HhcCCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          381 KDNGSPASLE--EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       381 ~~~~~~~~~~--~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      ....  ....  ...++..+........+-+....+++..-      ...+....+...++..+...|+.++|...++++
T Consensus       218 ~~~~--~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~  289 (398)
T PRK10747        218 VGDE--EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDG  289 (398)
T ss_pred             CCCH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2211  0000  00122222222222222222222222211      112344667788899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      ++.      +.++...   ...+.  ...+++++++..+++.++.         +|+.+..+..+|.++...+++++|..
T Consensus       290 l~~------~~~~~l~---~l~~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~  349 (398)
T PRK10747        290 LKR------QYDERLV---LLIPR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASL  349 (398)
T ss_pred             Hhc------CCCHHHH---HHHhh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            874      1133222   22222  2449999999999998877         45567789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      +|+++++..++.        ..+..++.++...|+.++|..+|++++.+.
T Consensus       350 ~le~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        350 AFRAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999875543        356789999999999999999999998864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.2e-14  Score=141.17  Aligned_cols=296  Identities=14%  Similarity=0.085  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      ....|..++...+|.+|+..|..|+++.     ++.    +..|.+.+.++...|+|++|.-..++.+++        ++
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-----pd~----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--------kd  114 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-----PDN----ASYYSNRAATLMMLGRFEEALGDARQSVRL--------KD  114 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhC-----ccc----hhhhchhHHHHHHHHhHhhcccchhhheec--------CC
Confidence            3446778888999999999999999987     443    335889999999999999999999998888        56


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      .....+...+.++...++..+|...++..-                .+           ....|+..+++.   +.....
T Consensus       115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~----------------~~-----------~~anal~~~~~~---~~s~s~  164 (486)
T KOG0550|consen  115 GFSKGQLREGQCHLALSDLIEAEEKLKSKQ----------------AY-----------KAANALPTLEKL---APSHSR  164 (486)
T ss_pred             CccccccchhhhhhhhHHHHHHHHHhhhhh----------------hh-----------HHhhhhhhhhcc---cccccC
Confidence            667788888888888888888887776110                01           111222222222   222233


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      .|....+...-+.++...|++++|...--..+++        ++....++...|.+++..++.+.|+..|++++.+....
T Consensus       165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh  236 (486)
T KOG0550|consen  165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH  236 (486)
T ss_pred             CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence            4555566667788888889999888887777777        77778888888888888899999999999988873321


Q ss_pred             CC---CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          508 VP---GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (712)
Q Consensus       508 ~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (712)
                      ..   ....+.....+..-|.-.++.|+|.+|.+.|..+|.+.|..   ....+.+|.+.+.+..++|+..+|+.-.+.|
T Consensus       237 ~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  237 QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            00   00122344566677888899999999999999999997753   3456788999999999999999999999999


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +.+        .+.+..++...|.++..+++|++|.+.|++|++.
T Consensus       314 l~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  314 LKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            997        4557789999999999999999999999999987

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.66  E-value=2.4e-14  Score=140.23  Aligned_cols=205  Identities=16%  Similarity=0.165  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      ...+..+..+|.++...|++++|+..+++++...     +...    .++..+|.++...|++++|+..+++++..    
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-----PDDY----LAYLALALYYQQLGELEKAEDSFRRALTL----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence            3457788999999999999999999999998764     3332    35888999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~  421 (712)
                          .|....++..+|.++...|++++|+.++++++.....      ......+..+|.++...|++++|..++.+++..
T Consensus        95 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        95 ----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY------PQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             ----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                4556678999999999999999999999999874321      122346788999999999999999999999853


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                            .+....++..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+.+.+.
T Consensus       165 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       165 ------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             ------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                  3334567889999999999999999999999987        33345666788999999999999999887765


Q ss_pred             HH
Q 005139          502 RI  503 (712)
Q Consensus       502 ~~  503 (712)
                      ..
T Consensus       231 ~~  232 (234)
T TIGR02521       231 KL  232 (234)
T ss_pred             hh
Confidence            54

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.66  E-value=4.1e-12  Score=130.71  Aligned_cols=388  Identities=13%  Similarity=0.095  Sum_probs=251.0

Q ss_pred             cccccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005139          186 GVKKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELV  265 (712)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  265 (712)
                      ....+...+-.+..-|+..+|-+........++....+|..+|..+....+ |++|+.+|+.|+.+-         ++..
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~-Y~eaiKcy~nAl~~~---------~dN~  109 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK-YDEAIKCYRNALKIE---------KDNL  109 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh-HHHHHHHHHHHHhcC---------CCcH
Confidence            333344455556777777777655555667888999999999999888886 999999999999863         4457


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005139          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (712)
Q Consensus       266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (712)
                      ..+..++....++++++-....-.+.+++.+     .    .-..|...+..+...|++..|....+........     
T Consensus       110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-----~----~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-----  175 (700)
T KOG1156|consen  110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRP-----S----QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-----  175 (700)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence            7889999999999999999998888888762     2    2335899999999999999999998887766431     


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      .+.....-......|..+-..+...  ++++++....... ............|.++..++++++|...|...+      
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll------  246 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL------  246 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH------
Confidence            2333333333333443333333222  6777766655432 222333455567899999999999999998877      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHh-----------cCCCCHHHHHHHH-------------HH
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAG-FAYQKALTAFKTN-----------KGENHPAVASVFV-------------RL  480 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~-----------~~~~~~~~~~~~~-------------~l  480 (712)
                      ...|+....+..+-.++..-.+--+++ ..|...-+.+...           .+.+-+....-+.             .+
T Consensus       247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl  326 (700)
T KOG1156|consen  247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL  326 (700)
T ss_pred             hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence            345666666665555554222222333 3333332221110           0001111111111             11


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC------------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGV------------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      -.+|   .+... ..++++.+..+...+.+.            .+....+.++.++.-+...|+++.|..+++.|+... 
T Consensus       327 ~SLy---k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-  401 (700)
T KOG1156|consen  327 RSLY---KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-  401 (700)
T ss_pred             HHHH---hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-
Confidence            1111   11111 124444444443333222            344567888899999999999999999999998654 


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHHHHhCCHHHHHHHHHHH
Q 005139          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN-QMGLACVQRYSINEAVELFEEA  626 (712)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~a  626 (712)
                            ++....+...|+++...|++++|..++.++.++       +.+.  .+.+ .-|....+.++.++|.+...+.
T Consensus       402 ------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-------D~aD--R~INsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  402 ------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-------DTAD--RAINSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             ------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cchh--HHHHHHHHHHHHHccccHHHHHHHHHh
Confidence                  445678889999999999999999999999875       1121  2333 4667777888888888765543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.66  E-value=4.9e-13  Score=126.23  Aligned_cols=281  Identities=12%  Similarity=0.094  Sum_probs=222.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (712)
                      +..|.-+.-..+.++|++.|...++.        +|...++...||.+|...|..+.|+.+.+..+...    +......
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr  106 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQR  106 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHH
Confidence            44566677788999999999998886        78899999999999999999999999887665421    1122344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      ..++..||.-|+..|-+|.|...|....      +.......++..|..+|....+|++|++..++...+-.+.   ...
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~------de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~  177 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLV------DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRV  177 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHh------cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chh
Confidence            5688899999999999999999998775      2344456678889999999999999999988877763332   256


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      ..+..|..||..+....+++.|...+.+|++.         ++....+-..+|.++...|+|++|++.++.+++..+.. 
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-  247 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQA---------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-  247 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-
Confidence            78889999999999999999999999999998         34456777889999999999999999999998865544 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  631 (712)
                           +..++..|..+|..+|+.++.+.++.++.+....         ..+...++.+-....-.+.|..++.+-+..  
T Consensus       248 -----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g---------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--  311 (389)
T COG2956         248 -----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG---------ADAELMLADLIELQEGIDAAQAYLTRQLRR--  311 (389)
T ss_pred             -----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC---------ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence                 4568888999999999999999999998875211         134455666666666677888777776666  


Q ss_pred             HhcCCCChhhHHHH
Q 005139          632 QECGPYHPDTLGVY  645 (712)
Q Consensus       632 ~~~~~~~p~~~~~~  645 (712)
                            +|.....+
T Consensus       312 ------~Pt~~gf~  319 (389)
T COG2956         312 ------KPTMRGFH  319 (389)
T ss_pred             ------CCcHHHHH
Confidence                  88765433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=8.7e-15  Score=148.61  Aligned_cols=269  Identities=16%  Similarity=0.090  Sum_probs=200.1

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      ..|..+++.|+..+|.-.|+.++...     |.    .+.+|..||.+....++-..|+..+++|+++        +|..
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P~----haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N  352 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQD-----PQ----HAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN  352 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhhC-----hH----HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence            36999999999999999999998765     33    4557999999999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ..++..||..|...|.-.+|.+++.+-+...+.......... .-......-......+..-.++|..+.   ...+. .
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa---~~~~~-~  427 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAA---RQLPT-K  427 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHH---HhCCC-C
Confidence            999999999999999999999999988765432210000000 000000000000001112223333332   22221 2


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      ..+.+...||.+|...|+|++|+.+|+.||..        .|.....|+.||..+....+..+|+..|.+|+++      
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------  493 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------  493 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------
Confidence            44677889999999999999999999999998        9999999999999999999999999999999999      


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDS  577 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A  577 (712)
                         .|.+++++++||..+..+|.|++|.++|-.||.+.+...+...   .--.+|..|-.++...++.+-+
T Consensus       494 ---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  494 ---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             ---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence               6678999999999999999999999999999999887432221   1123444444555555655533

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.64  E-value=8.2e-13  Score=139.33  Aligned_cols=302  Identities=11%  Similarity=0.075  Sum_probs=214.2

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +...+.-|......|+|+.|.+.+.++.+.      .+.|..   .+...+.+....|+++.|..+|.++.+.       
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l---~~llaA~aA~~~g~~~~A~~~l~~A~~~-------  147 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV---NYLLAAEAAQQRGDEARANQHLERAAEL-------  147 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            444556788888899999999888775443      222322   2444566669999999999999999876       


Q ss_pred             CChhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          345 TDPRVG-ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       345 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                       +|... ......+.++...|++++|...+++..+..|++.        .++..++.+|...|++++|+..+.+..+.. 
T Consensus       148 -~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-  217 (398)
T PRK10747        148 -ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP--------EVLRLAEQAYIRTGAWSSLLDILPSMAKAH-  217 (398)
T ss_pred             -CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-
Confidence             33332 2333458999999999999999999988876553        378889999999999999999988775432 


Q ss_pred             hCCCChhHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          424 ANDQDAEVAS-----VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE  498 (712)
Q Consensus       424 ~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  498 (712)
                        ...+....     ++..+........+-+....+++..-..        .+....+...++..+...|+.++|...++
T Consensus       218 --~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        218 --VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--------TRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--------HhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence              11222111     2222222222222223333333222221        34567788899999999999999999999


Q ss_pred             HHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 005139          499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (712)
Q Consensus       499 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (712)
                      ++++.  .    . ++..   ....+.  ...++++++++.+++.++..++.       ...+..+|.++...+++++|.
T Consensus       288 ~~l~~--~----~-~~~l---~~l~~~--l~~~~~~~al~~~e~~lk~~P~~-------~~l~l~lgrl~~~~~~~~~A~  348 (398)
T PRK10747        288 DGLKR--Q----Y-DERL---VLLIPR--LKTNNPEQLEKVLRQQIKQHGDT-------PLLWSTLGQLLMKHGEWQEAS  348 (398)
T ss_pred             HHHhc--C----C-CHHH---HHHHhh--ccCCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHH
Confidence            99874  1    1 2222   222222  24589999999999988766554       357888999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (712)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  630 (712)
                      .+|+++++.       .|.  ...+..++.++.+.|+.++|..+|++++.+.
T Consensus       349 ~~le~al~~-------~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        349 LAFRAALKQ-------RPD--AYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhc-------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999985       122  2456789999999999999999999998864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=8.6e-14  Score=135.41  Aligned_cols=291  Identities=19%  Similarity=0.160  Sum_probs=229.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+.-....|..++...+ |..|+..|..|+++.         |+.+..|.+.+.+++..|+|++|.-..++.+++..  
T Consensus        47 ~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--  114 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--  114 (486)
T ss_pred             HHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--
Confidence            445566778888899886 999999999999987         55588899999999999999999999999998862  


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhCC--CChhHHHHHHHHHHHHHHhCCHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL--------EVQKQVLGE--TDPRVGETCRYLAEAHVQALQFSE  368 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~  368 (712)
                         ..+.    .+...+.++...++..+|...++..-        .....+...  ..|....+...-+.|+...|++++
T Consensus       115 ---~~~k----~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~  187 (486)
T KOG0550|consen  115 ---GFSK----GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE  187 (486)
T ss_pred             ---Cccc----cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence               2222    36677888888888777776665211        111111111  125556666777899999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHH
Q 005139          369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN------DQDAEVASVDCSIGDTY  442 (712)
Q Consensus       369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~  442 (712)
                      |+..--..+++....        +.+++..|.++...++.+.|+.+|++++.+-...      -..+.....+..-|.-.
T Consensus       188 a~~ea~~ilkld~~n--------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  188 AQSEAIDILKLDATN--------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             HHHHHHHHHhcccch--------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            999888777766443        4478888999999999999999999998542211      11234455667788999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005139          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (712)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (712)
                      ++.|+|..|.+.|.++|.+-..    +...++..|.+.|.+..++|+..+|+.-++.++.+         .+....++..
T Consensus       260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~  326 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR  326 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence            9999999999999999998222    23356788999999999999999999999999999         6778999999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          523 VSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .|.++..+++|++|++.|+++++....
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999987654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.62  E-value=1.2e-12  Score=140.05  Aligned_cols=459  Identities=13%  Similarity=0.016  Sum_probs=321.8

Q ss_pred             cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l  271 (712)
                      .++....+.+++.+++..+..+...+|....++..+|..|...|+ |..|+..|.+|..+.         |......+..
T Consensus       567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~Lr---------P~s~y~~fk~  636 (1238)
T KOG1127|consen  567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLR---------PLSKYGRFKE  636 (1238)
T ss_pred             hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcC---------cHhHHHHHHH
Confidence            356667788888999999999999999999999999999999998 999999999997653         4555666778


Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (712)
                      +.+.+..|+|.+|+..+...+...........  ..+.++.+++..+...|-+.+|..+++++++.+.-.+....-....
T Consensus       637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~--gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~  714 (1238)
T KOG1127|consen  637 AVMECDNGKYKEALDALGLIIYAFSLERTGQN--GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL  714 (1238)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence            99999999999999999988876532211111  1345677888888888989999999999988876544332112222


Q ss_pred             HHHHHHHHHHHhCCH-----------------------------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139          352 TCRYLAEAHVQALQF-----------------------------SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC  402 (712)
Q Consensus       352 ~~~~la~~~~~~g~~-----------------------------~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~  402 (712)
                      .|..++..+...-..                             --|.+++-..+.+...         ...|+++|.-|
T Consensus       715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~---------~~~WyNLGiny  785 (1238)
T KOG1127|consen  715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH---------MYPWYNLGINY  785 (1238)
T ss_pred             HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc---------cchHHHHhHHH
Confidence            333333322211111                             1122222222222211         33577788777


Q ss_pred             HH--------cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 005139          403 ET--------KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (712)
Q Consensus       403 ~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (712)
                      +.        +.+...|+.++.+++.+..      .....++.||.+ ...|.+.-|..+|-+++..        .|...
T Consensus       786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~a------nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~  850 (1238)
T KOG1127|consen  786 LRYFLLLGETMKDACTAIRCCKKAVSLCA------NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCH  850 (1238)
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHHhh------ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccch
Confidence            65        2233578899998886432      234567777776 6668999999999999887        78888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC
Q 005139          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ  554 (712)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  554 (712)
                      ..|.++|.++....+++-|...|.++..+         .|.....|...+.+....|+.-++...|.....+.... +..
T Consensus       851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSL---------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-gka  920 (1238)
T KOG1127|consen  851 CQWLNLGVLVLENQDFEHAEPAFSSVQSL---------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE-GKA  920 (1238)
T ss_pred             hheeccceeEEecccHHHhhHHHHhhhhc---------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc-ccc
Confidence            99999999999999999999999999888         56677889999999999999999999988866655433 222


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL---RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (712)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  631 (712)
                      ... ..+..--......|++++-+...+++-...   ..... .++....++...|.....++.+..|.+.+.+.+.+++
T Consensus       921 ~~f-~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe  998 (1238)
T KOG1127|consen  921 KKF-QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLE  998 (1238)
T ss_pred             chh-hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221 234444556667788887776665543221   11112 2355678999999999999999999999999999998


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHccchhhh----CCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139          632 QECGPYHPDTLGVYSNLAGTYDAIGREEKL----GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  701 (712)
Q Consensus       632 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~l----~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p  701 (712)
                      ..+.....++  +--++|+++...|..+..    ....-+..+-........+-.|+++++. +.|++++....
T Consensus       999 ~k~d~sqynv--ak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl-~~fe~aLsis~ 1069 (1238)
T KOG1127|consen  999 LKLDESQYNV--AKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSL-EFFEQALSISN 1069 (1238)
T ss_pred             HHHhhhhhhh--hhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHH-HHHHHHhhhcc
Confidence            8877543333  556778888888882222    1222222222333444447789999999 99999887544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.8e-11  Score=124.67  Aligned_cols=415  Identities=13%  Similarity=0.110  Sum_probs=250.1

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc
Q 005139          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (712)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (712)
                      ..++.--..+...++ |++|.....+.+...         |+...+++.--.++...++|++|+.+.+.-....     .
T Consensus        13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~   77 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGE-YEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V   77 (652)
T ss_pred             HHHHHHHHHhccchH-HHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence            445555556677776 999999888888653         3335566667788889999999997666543321     0


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (712)
Q Consensus       302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (712)
                      .+     ...+..+.|.++++..++|+..+.-+           ++....++...|.+++++|+|++|...|+..++-..
T Consensus        78 ~~-----~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   78 IN-----SFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             cc-----hhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            11     11368899999999999999998821           222344667789999999999999999998765432


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (712)
Q Consensus       382 ~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (712)
                      ...+     .-.-.+.++..-...+++             ...... .......+++.|.++...|+|.+|++.+++|+.
T Consensus       142 dd~d-----~~~r~nl~a~~a~l~~~~-------------~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  142 DDQD-----EERRANLLAVAAALQVQL-------------LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             chHH-----HHHHHHHHHHHHhhhHHH-------------HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            2211     111111222211111111             111122 233567789999999999999999999999999


Q ss_pred             HHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc--
Q 005139          461 AFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--  531 (712)
Q Consensus       461 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--  531 (712)
                      ++++....++       .....+...|+.++..+|+..+|...|...+.....     +.+..+.+-++|-.+-....  
T Consensus       204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~  278 (652)
T KOG2376|consen  204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF  278 (652)
T ss_pred             HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence            9887654332       235567889999999999999999999888875322     12223333333322111110  


Q ss_pred             ------------------------------------cHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 005139          532 ------------------------------------ELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNY  574 (712)
Q Consensus       532 ------------------------------------~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~  574 (712)
                                                          -+.-...-..++.++....++..+ ....++..-+ ...+...+
T Consensus       279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~-t~~~~~~~  357 (652)
T KOG2376|consen  279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEA-TKVREKKH  357 (652)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHH-HHHHHHHH
Confidence                                                000001111122222333333322 1111211111 11111134


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHH
Q 005139          575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--YHPDTLGVYSNLAGTY  652 (712)
Q Consensus       575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~La~~~  652 (712)
                      .+|..++..       ..+.++.....+...++++...+|+++.|++.+...+..+...+..  ..|..+.   .+-.+|
T Consensus       358 ~ka~e~L~~-------~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~---aiv~l~  427 (652)
T KOG2376|consen  358 KKAIELLLQ-------FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG---AIVALY  427 (652)
T ss_pred             hhhHHHHHH-------HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH---HHHHHH
Confidence            444444433       3344444445688889999999999999999999666444433332  2343332   222333


Q ss_pred             HHccc--------------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          653 DAIGR--------------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       653 ~~~g~--------------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ...++              ...-....+.....+..++.+-.+.|+-++|. ..|+++++.+|.
T Consensus       428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~  490 (652)
T KOG2376|consen  428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPN  490 (652)
T ss_pred             HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCc
Confidence            33333              22222344555666778888888899999999 999999998886

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=3.8e-14  Score=144.04  Aligned_cols=266  Identities=16%  Similarity=0.137  Sum_probs=201.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccc
Q 005139          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (712)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (712)
                      -+..|..+++.|+ ..+|.-.|+.|++.         +|..+.++..||.+....++-..|+..+++++++.     +.+
T Consensus       288 Pf~eG~~lm~nG~-L~~A~LafEAAVkq---------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-----P~N  352 (579)
T KOG1125|consen  288 PFKEGCNLMKNGD-LSEAALAFEAAVKQ---------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-----PTN  352 (579)
T ss_pred             hHHHHHHHHhcCC-chHHHHHHHHHHhh---------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-----Ccc
Confidence            3678999999998 99999999999864         38889999999999999999999999999999997     443


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHH-------HHHHHHHHhCCHHHHHHHHHHH
Q 005139          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR-------YLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       304 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~a  376 (712)
                          ..++..||..|...|.-.+|+.++.+-+...        |.....-.       ....-......+..-.++|..+
T Consensus       353 ----leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--------p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea  420 (579)
T KOG1125|consen  353 ----LEALMALAVSYTNEGLQNQALKMLDKWIRNK--------PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA  420 (579)
T ss_pred             ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHH
Confidence                4469999999999999999999999987762        11110000       0000000011122233344444


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (712)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (712)
                      ....+...+      ..++..||.+|...|+|++|+.+|+.|+      ...|.....|+.||-.+..-.+..+|+..|+
T Consensus       421 a~~~~~~~D------pdvQ~~LGVLy~ls~efdraiDcf~~AL------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~  488 (579)
T KOG1125|consen  421 ARQLPTKID------PDVQSGLGVLYNLSGEFDRAVDCFEAAL------QVKPNDYLLWNRLGATLANGNRSEEAISAYN  488 (579)
T ss_pred             HHhCCCCCC------hhHHhhhHHHHhcchHHHHHHHHHHHHH------hcCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence            333332111      3368899999999999999999999998      5788889999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh-HHHHHHHHHHHHHHcccHHH
Q 005139          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYESMNELEQ  535 (712)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  535 (712)
                      +|+++        .|..++++++||..++.+|.|++|.++|-.||.+.++.......+. .-.+|..|-.++..+++.+-
T Consensus       489 rALqL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  489 RALQL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHhc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            99999        9999999999999999999999999999999999877432222211 12345455455556666553


Q ss_pred             H
Q 005139          536 A  536 (712)
Q Consensus       536 A  536 (712)
                      +
T Consensus       561 l  561 (579)
T KOG1125|consen  561 L  561 (579)
T ss_pred             H
Confidence            3

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=5.9e-12  Score=128.20  Aligned_cols=423  Identities=11%  Similarity=0.045  Sum_probs=268.3

Q ss_pred             cCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (712)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l  271 (712)
                      -..-.+....+|..|. .+.+....+.......+..|.|+|+.+. .++|+..+. .+        .   +....++...
T Consensus        51 cKvValIq~~ky~~AL-k~ikk~~~~~~~~~~~fEKAYc~Yrlnk-~Dealk~~~-~~--------~---~~~~~ll~L~  116 (652)
T KOG2376|consen   51 CKVVALIQLDKYEDAL-KLIKKNGALLVINSFFFEKAYCEYRLNK-LDEALKTLK-GL--------D---RLDDKLLELR  116 (652)
T ss_pred             hhHhhhhhhhHHHHHH-HHHHhcchhhhcchhhHHHHHHHHHccc-HHHHHHHHh-cc--------c---ccchHHHHHH
Confidence            3334455566666665 3333333222333334788888888886 888887776 11        1   1113466778


Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhh----------------------hcccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIE----------------------EGQEHALAKFAGHMQLGDTYAMLGQLENSLM  329 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  329 (712)
                      |.+++++|+|++|...|+..++-....                      ..+..+......+++.+.++...|+|.+|++
T Consensus       117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e  196 (652)
T KOG2376|consen  117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE  196 (652)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence            999999999999999999875432111                      1122223345678999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139          330 CYTTGLEVQKQVLGETDP-------RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC  402 (712)
Q Consensus       330 ~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~  402 (712)
                      .+++++.++++.+..++.       ++..+...|+.++..+|+..+|...|...+...+.    +.+..+.+-++|-.+-
T Consensus       197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~----D~~~~Av~~NNLva~~  272 (652)
T KOG2376|consen  197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA----DEPSLAVAVNNLVALS  272 (652)
T ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC----CchHHHHHhcchhhhc
Confidence            999999999887655432       34567788999999999999999999988876543    3344454555554333


Q ss_pred             HHcCCHH-HHHHHHHHHHH----HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139          403 ETKGDHE-AALEHLVLASM----TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (712)
Q Consensus       403 ~~~g~~~-~A~~~~~~al~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (712)
                      ....-++ .++..++....    .....-.......++.+.+.+.+..+.-+.+.+.....-.        ..|......
T Consensus       273 ~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~--------~~p~~~~~~  344 (652)
T KOG2376|consen  273 KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPG--------MSPESLFPI  344 (652)
T ss_pred             cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc--------cCchHHHHH
Confidence            2222222 11111111100    0000001122234455666666666665555444332211        233333333


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcH
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV  557 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  557 (712)
                      ........+...+..|.+++...-+-.        +.....+...++.+...+|+++.|++.+...+.........-...
T Consensus       345 ll~~~t~~~~~~~~ka~e~L~~~~~~~--------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~  416 (652)
T KOG2376|consen  345 LLQEATKVREKKHKKAIELLLQFADGH--------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL  416 (652)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhccC--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC
Confidence            333333333336777777776654431        222366788899999999999999999996654333322222122


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (712)
                      ..+...+-.+|++.++-+-|...+.+|+..++...... ......+..++..-.+.|+-++|...+++.++.        
T Consensus       417 P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------  487 (652)
T KOG2376|consen  417 PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------  487 (652)
T ss_pred             hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------
Confidence            22334556678888888889999999999888765444 334456677788888889999999999999998        


Q ss_pred             ChhhHHHHHHHHHHHHHccc
Q 005139          638 HPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       638 ~p~~~~~~~~La~~~~~~g~  657 (712)
                      +|....++..+..+|....-
T Consensus       488 n~~d~~~l~~lV~a~~~~d~  507 (652)
T KOG2376|consen  488 NPNDTDLLVQLVTAYARLDP  507 (652)
T ss_pred             CCchHHHHHHHHHHHHhcCH
Confidence            88888999999888887665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.60  E-value=1.1e-11  Score=131.60  Aligned_cols=297  Identities=15%  Similarity=0.132  Sum_probs=201.9

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      ..++.....++...|++++|+.+++......         ......+-..|.++..+|++++|...|...+..       
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------   67 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------   67 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence            3455556888899999999999998755443         114456888999999999999999999999888       


Q ss_pred             CChhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHhcCCCCCH------------------------HHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASL------------------------EEAADR  395 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~------------------------~~a~~~  395 (712)
                       +|+....+..+..+.....     +.+.-..+|++....++....+...                        .+..++
T Consensus        68 -NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF  146 (517)
T PF12569_consen   68 -NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLF  146 (517)
T ss_pred             -CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHH
Confidence             6777777777777763333     3555566666655554433221000                        001122


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          396 RLMGLICETKGDHEAALEHLVLASMTMIA-----------NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (712)
Q Consensus       396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (712)
                      ..+-.+|....+..-....+.........           ...+....++++.+|+.|...|++++|+.++++||+.   
T Consensus       147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---  223 (517)
T PF12569_consen  147 SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---  223 (517)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence            22223333222211111222221111111           0122335678899999999999999999999999998   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (712)
                           .|..+..+...|.++-..|++.+|...++.|..+-         ...-.+-...+..+++.|+.++|.+.+..-.
T Consensus       224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---------LADRYINSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence                 89999999999999999999999999999998882         2234456677888999999999998876543


Q ss_pred             HHHHhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139          545 KIYNDAPGQQS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       545 ~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      .-......+-.  ...+.....|.+|.+.|++..|+..|......+..+.+..
T Consensus       290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ  342 (517)
T PF12569_consen  290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ  342 (517)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence            32111001111  2234456789999999999999999999999998876553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=2e-10  Score=113.83  Aligned_cols=425  Identities=15%  Similarity=0.091  Sum_probs=285.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005139          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (712)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (712)
                      +.-....+...|.--..+++ +..|...|++||..-         ......+...+.+-++......|..++.+|+.+.+
T Consensus        69 nR~~~~~WikYaqwEesq~e-~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP  138 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQKE-IQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP  138 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence            33445556666666666665 777777777777542         12244566678888899999999999999998863


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                      .     .    -..|+....+-..+|+...|...|++-+..        .|.. .+|......-......+.|...|++.
T Consensus       139 R-----V----dqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerf  200 (677)
T KOG1915|consen  139 R-----V----DQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERF  200 (677)
T ss_pred             h-----H----HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2     1    123666677777889999999999888776        2332 45555555556666777777777776


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (712)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (712)
                      +-..++.         ..+...+..-...|+...|...|..|+..+   +++......+...|..-..+..++.|..+|+
T Consensus       201 V~~HP~v---------~~wikyarFE~k~g~~~~aR~VyerAie~~---~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk  268 (677)
T KOG1915|consen  201 VLVHPKV---------SNWIKYARFEEKHGNVALARSVYERAIEFL---GDDEEAEILFVAFAEFEERQKEYERARFIYK  268 (677)
T ss_pred             heecccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544332         256666777777777777777777776544   2333344444455555555666666666666


Q ss_pred             HHHHHH---------------HHhcCC---------------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          457 KALTAF---------------KTNKGE---------------------NHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       457 ~al~~~---------------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                      -|++..               ++.+|.                     .+|.+..+|+..-.+-...|+.+.-.+.|++|
T Consensus       269 yAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA  348 (677)
T KOG1915|consen  269 YALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA  348 (677)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            555431               111111                     25556677888888888889999999999999


Q ss_pred             HHHHhcCCCCCCChhHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          501 LRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (712)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (712)
                      +.-................|.+.+.. -+...+.+.+.++|+.++.+.|.   ...+.+.++...|....++.+...|..
T Consensus       349 Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH---kkFtFaKiWlmyA~feIRq~~l~~ARk  425 (677)
T KOG1915|consen  349 IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH---KKFTFAKIWLMYAQFEIRQLNLTGARK  425 (677)
T ss_pred             HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc---ccchHHHHHHHHHHHHHHHcccHHHHH
Confidence            87632210000001122233333321 23467899999999999997653   245778899999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--
Q 005139          580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--  657 (712)
Q Consensus       580 ~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--  657 (712)
                      .+-.|+..+.+         ..++...-.+-.++++++....+|++.++.        .|....++...|.+-..+|+  
T Consensus       426 iLG~AIG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~Lgdtd  488 (677)
T KOG1915|consen  426 ILGNAIGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTD  488 (677)
T ss_pred             HHHHHhccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHH
Confidence            99999876421         134445556777889999999999999998        99999999999999999998  


Q ss_pred             -----hh-hhCCCChhHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          658 -----EE-KLGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       658 -----~~-~l~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                           ++ ++....-+.+. .|......-...|.++.|. ..|+.+|++.+.
T Consensus       489 RaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h  539 (677)
T KOG1915|consen  489 RARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH  539 (677)
T ss_pred             HHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence                 11 11111111121 2444555666799999999 999999998876

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=4.6e-11  Score=114.08  Aligned_cols=400  Identities=16%  Similarity=0.090  Sum_probs=215.6

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHH
Q 005139          233 SSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM  312 (712)
Q Consensus       233 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  312 (712)
                      ...| |..|+.+++-.+..-+        .+....-.++|.|++.+|+|++|+..|.-+.+..       ++  ....+.
T Consensus        34 s~rD-ytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~v   95 (557)
T KOG3785|consen   34 SNRD-YTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELGV   95 (557)
T ss_pred             hccc-chhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--Ccccch
Confidence            3434 8999988887764321        1223445568999999999999999998876532       11  233588


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH---------------------------HHHHHHHhCC
Q 005139          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY---------------------------LAEAHVQALQ  365 (712)
Q Consensus       313 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------------------------la~~~~~~g~  365 (712)
                      +||.+++.+|.|.+|.....++-+         .|...+.++.                           ||.+++..-.
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H  166 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH  166 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence            999999999999999887766532         2333333333                           3334444444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005139          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (712)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (712)
                      |.+|++.|.+.+.-.+..        ...-..+|.+|..+.-++-+.+.+.--+      ...|+...+.+..+...++.
T Consensus       167 YQeAIdvYkrvL~dn~ey--------~alNVy~ALCyyKlDYydvsqevl~vYL------~q~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  167 YQEAIDVYKRVLQDNPEY--------IALNVYMALCYYKLDYYDVSQEVLKVYL------RQFPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             HHHHHHHHHHHHhcChhh--------hhhHHHHHHHHHhcchhhhHHHHHHHHH------HhCCCcHHHHHHHHHHHhhh
Confidence            444444444444322111        1123334444444444444444333222      12222233333333333332


Q ss_pred             CCHHHHHHHHHHHHHHHH-------Hh---------cCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          446 SRYDEAGFAYQKALTAFK-------TN---------KGE--------NHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       446 g~~~~A~~~~~~al~~~~-------~~---------~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                      =.-..|..-......-..       .+         .|+        --...+.+..+|+..|.++++..+|..++... 
T Consensus       233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-  311 (557)
T KOG3785|consen  233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-  311 (557)
T ss_pred             hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-
Confidence            111122221111111000       00         000        00112334445555555555555554443321 


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHH
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS---TVAGIEAQMGVMYYMLGNYSDSY  578 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~  578 (712)
                                 .|..+.-+...|.++...|+--...+.++-|-+.+.-. |...   ....-...+|.+++-..+|++.+
T Consensus       312 -----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl  379 (557)
T KOG3785|consen  312 -----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVL  379 (557)
T ss_pred             -----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHH
Confidence                       22233334455555555555444444444443333222 2111   00111234666777777888888


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-
Q 005139          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-  657 (712)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-  657 (712)
                      .++...-..+..   .     -...+++|+++...|++.+|.++|-+.-       ++.-.+.......||.||...+. 
T Consensus       380 ~YlnSi~sYF~N---d-----D~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~~~Y~s~LArCyi~nkkP  444 (557)
T KOG3785|consen  380 TYLNSIESYFTN---D-----DDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNKILYKSMLARCYIRNKKP  444 (557)
T ss_pred             HHHHHHHHHhcC---c-----chhhhHHHHHHHHhcChHHHHHHHhhhc-------ChhhhhhHHHHHHHHHHHHhcCCc
Confidence            877765544321   1     1456789999999999999998876643       22223445566789999999988 


Q ss_pred             ----hhhhCCCCh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          658 ----EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       658 ----~~~l~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                          .-.+....| +.-..+..+|...++.+++-=|. +.|..+-..+|.
T Consensus       445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP~  493 (557)
T KOG3785|consen  445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDPT  493 (557)
T ss_pred             hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCCC
Confidence                222223333 33345666788888999998888 899998888886

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=3.8e-11  Score=114.64  Aligned_cols=379  Identities=12%  Similarity=0.091  Sum_probs=244.5

Q ss_pred             cccccccccccCccccc-cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005139          196 PMKKRKGKLHKGQDVSE-AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI  274 (712)
Q Consensus       196 ~~~~~~~~~~a~~~~~~-~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~  274 (712)
                      .+....+|..|+..+.- ...+..+....-+.+|.+++..|+ |++|+..|.-+..-      ...+   +....+||.|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~~---~el~vnLAcc  100 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDAP---AELGVNLACC  100 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCCC---cccchhHHHH
Confidence            35566677777732222 223333445677889999999997 99998888766541      1222   4556779999


Q ss_pred             HHHcCCHhHHHHHHHHhhchhhhh---------hcccchH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          275 YCSLGQYNEAIPVLEQSIEIPVIE---------EGQEHAL--------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (712)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  337 (712)
                      ++-+|.|.+|.....++-+..-..         .+.+...        ...+-...||.+.+..-.|.+|++.|.+++.-
T Consensus       101 ~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999887775421100         0111100        01122345677777777788888888887765


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH--cCCHHHH----
Q 005139          338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET--KGDHEAA----  411 (712)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~--~g~~~~A----  411 (712)
                              +|+....-.++|.||+++.-|+-+.+++.-.+...++..        .+.+..+...++  .|+..++    
T Consensus       181 --------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~  244 (557)
T KOG3785|consen  181 --------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKE  244 (557)
T ss_pred             --------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHH
Confidence                    677777888999999999999999888877776654432        133333433332  2322221    


Q ss_pred             ------------HHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          412 ------------LEHLVLASMTMIAN--------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       412 ------------~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                                  ...++.-+-.++..        +.-..++.+..++...|..+++..+|..+.+..           .|
T Consensus       245 ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~P  313 (557)
T KOG3785|consen  245 LADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DP  313 (557)
T ss_pred             HHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CC
Confidence                        11111100000000        011224567788899999999999988776543           67


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      ..+.-+...|.+....|+--...+.+.-|-..+.-.......-+.......+|.+++-..++++.+.++......+-+. 
T Consensus       314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-  392 (557)
T KOG3785|consen  314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-  392 (557)
T ss_pred             CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence            7777888889999998887777776666655544332122222334445677888888889999999888766665433 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      +      ...+++|.++...|+|.+|.++|-+.-..       .-.........||.||...+.++-|...+-+
T Consensus       393 D------~Fn~N~AQAk~atgny~eaEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  393 D------DFNLNLAQAKLATGNYVEAEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLK  453 (557)
T ss_pred             c------hhhhHHHHHHHHhcChHHHHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence            1      35678999999999999999988665321       1112234567789999999999999887755

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=1.3e-09  Score=108.47  Aligned_cols=418  Identities=14%  Similarity=0.007  Sum_probs=277.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHhHHHHHHHHhhchhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-QYNEAIPVLEQSIEIPVI  297 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g-~~~~A~~~~~~al~~~~~  297 (712)
                      -.+...+++|..++.--+|++.|...+++|..+.+......  .....++..|+.+|.... .+..|...+++++++.  
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels--  119 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS--  119 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh--
Confidence            34667789999988888889999999999999887653221  233567778899999887 8999999999999997  


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------------------------------HHH
Q 005139          298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ------------------------------------KQV  341 (712)
Q Consensus       298 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------------~~~  341 (712)
                         ...|...-..++.|+.++....++..|++.+.-..+.+                                    ..+
T Consensus       120 ---q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi  196 (629)
T KOG2300|consen  120 ---QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQI  196 (629)
T ss_pred             ---cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence               34443344457899999999999998887743221111                                    001


Q ss_pred             hCCC--ChhHHHHH----HHHHH-HHHHhCCHHHHHHHHHHHHHHHHhcCC-----------CCCHHH----------HH
Q 005139          342 LGET--DPRVGETC----RYLAE-AHVQALQFSEAQKFCQMALDIHKDNGS-----------PASLEE----------AA  393 (712)
Q Consensus       342 ~~~~--~~~~~~~~----~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~----------a~  393 (712)
                      ....  ++...+.+    ..+-. .|...|+...+...+++.-........           .+.+..          +.
T Consensus       197 ~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaL  276 (629)
T KOG2300|consen  197 WQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICAL  276 (629)
T ss_pred             HhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhh
Confidence            0000  11111111    11111 233445555555444433222211111           011111          11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV--------ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                      +|..-..--...|-+++|.++-++++.........+..        ...+-++..+-.-.|++.+|++....+.+.+.+.
T Consensus       277 V~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~  356 (629)
T KOG2300|consen  277 VYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF  356 (629)
T ss_pred             hhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            11111111224577899999999888776655444422        2335566777788999999999999999988775


Q ss_pred             cCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          466 KGE--NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       466 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                      .++  -....+.+...+|......+.++.|...|..|.+....      ....+.+-.++|..|...|+-+.-.+    +
T Consensus       357 p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------~dl~a~~nlnlAi~YL~~~~~ed~y~----~  426 (629)
T KOG2300|consen  357 PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------IDLQAFCNLNLAISYLRIGDAEDLYK----A  426 (629)
T ss_pred             CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------HHHHHHHHHhHHHHHHHhccHHHHHH----H
Confidence            431  12234667778888888899999999999999998654      33356677889999999887554333    3


Q ss_pred             HHHHHhCCCCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 005139          544 LKIYNDAPGQQ----STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA  619 (712)
Q Consensus       544 l~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  619 (712)
                      ++.........    ...+.+++..|...+.++++.||...+.+.+++....  ......+..+..||.+..-.|+..++
T Consensus       427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es  504 (629)
T KOG2300|consen  427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVES  504 (629)
T ss_pred             HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            33221110111    1345678888999999999999999999999987332  22345567888999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       620 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      ....+-++++.+++.+  +|-......-+-.+|...|+
T Consensus       505 ~nmvrpamqlAkKi~D--i~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  505 RNMVRPAMQLAKKIPD--IPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             HhccchHHHHHhcCCC--chHHHHHHHHHHHHHHHhCc
Confidence            9999999999888744  77777777777778888776

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.2e-09  Score=108.61  Aligned_cols=377  Identities=13%  Similarity=-0.003  Sum_probs=245.3

Q ss_pred             ccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005139          197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC  276 (712)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~  276 (712)
                      -.+++.+..|..-+..+...+.....+++..+..-+.... ...|...+++|+.++         |..-..++....+-.
T Consensus        83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~-vNhARNv~dRAvt~l---------PRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ-VNHARNVWDRAVTIL---------PRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh-HhHHHHHHHHHHHhc---------chHHHHHHHHHHHHH
Confidence            3445555666667777888888899999999999998875 999999999999988         445566666666677


Q ss_pred             HcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005139          277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL  356 (712)
Q Consensus       277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  356 (712)
                      .+|+..-|.++|++-+...+     +.     .+|......-......+.|...|++-+-.        ||.+ ..|...
T Consensus       153 ~LgNi~gaRqiferW~~w~P-----~e-----qaW~sfI~fElRykeieraR~IYerfV~~--------HP~v-~~wiky  213 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEP-----DE-----QAWLSFIKFELRYKEIERARSIYERFVLV--------HPKV-SNWIKY  213 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCC-----cH-----HHHHHHHHHHHHhhHHHHHHHHHHHHhee--------cccH-HHHHHH
Confidence            78999999999999887642     11     13555555555556666677777666554        4433 456666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------
Q 005139          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA------------  424 (712)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------  424 (712)
                      +..-...|+..-|...|.+|++...+.     ......+...|..-..+..++.|.-.|.-|+..+..            
T Consensus       214 arFE~k~g~~~~aR~VyerAie~~~~d-----~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~  288 (677)
T KOG1915|consen  214 ARFEEKHGNVALARSVYERAIEFLGDD-----EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA  288 (677)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            666667777777777777777665432     122223334444444555555555555554432211            


Q ss_pred             --------------------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHH
Q 005139          425 --------------------------NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-HPAVASVF  477 (712)
Q Consensus       425 --------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~  477 (712)
                                                ...+|....+++..-.+-...|+.+.-.+.|++|+.-........ ....+..|
T Consensus       289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW  368 (677)
T KOG1915|consen  289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW  368 (677)
T ss_pred             HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence                                      112333445566666667778999999999999987522110000 11123333


Q ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005139          478 VRLADM-YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (712)
Q Consensus       478 ~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (712)
                      .+.+.. -....+.+.+.+.|+.++++...     .....+.+|...|....++.+...|.+.+-.|+-.+|..      
T Consensus       369 inYalyeEle~ed~ertr~vyq~~l~lIPH-----kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------  437 (677)
T KOG1915|consen  369 INYALYEELEAEDVERTRQVYQACLDLIPH-----KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------  437 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-----ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------
Confidence            333322 23578999999999999998633     356678889999999999999999998888888776654      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                        .+......+-.++++++....+|++-++.        .|....+|...|.+-..+|+.+.|...|+-|+.
T Consensus       438 --KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  438 --KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             --hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence              24444455555666666666666666653        233445666666666666666666666665554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.48  E-value=3e-12  Score=128.22  Aligned_cols=240  Identities=17%  Similarity=0.162  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +..|...|..|...+++++|.+.|.++.......++....+..+...+.+|... ++++|+.+|++|+.++...+  ...
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~  111 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence            445666778888899999999999999998888888888888888888888666 99999999999999998875  245


Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          472 AVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ..+.++..+|.+|... |++++|+++|++|+.++...   ........++..+|.++...|+|++|++.|++........
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence            5688999999999999 99999999999999999873   3455667888999999999999999999999987754333


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Q 005139          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARS  628 (712)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~  628 (712)
                      ..........+...+.+++..|++..|...+++..........   ..-...+..|-.++..  ...+.+|+.-|.....
T Consensus       189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence            2222344456677888999999999999988887664322221   1223455566666653  3467778777777666


Q ss_pred             HHHHhcCCCChhhHHHHHHH
Q 005139          629 ILEQECGPYHPDTLGVYSNL  648 (712)
Q Consensus       629 ~~~~~~~~~~p~~~~~~~~L  648 (712)
                      +        ++....++..+
T Consensus       266 l--------d~w~~~~l~~~  277 (282)
T PF14938_consen  266 L--------DNWKTKMLLKI  277 (282)
T ss_dssp             ----------HHHHHHHHHH
T ss_pred             c--------HHHHHHHHHHH
Confidence            6        66555555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=5.8e-10  Score=118.69  Aligned_cols=301  Identities=18%  Similarity=0.114  Sum_probs=203.0

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (712)
                      ..++++..+.++...|+ +++|++.+.......         .+....+...|.++..+|++++|...|...+...    
T Consensus         3 ~SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----   68 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGD-YEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----   68 (517)
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            45678889999999997 999999987755443         5557778889999999999999999999999886    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCC--------CCh----------------hHH
Q 005139          300 GQEHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGE--------TDP----------------RVG  350 (712)
Q Consensus       300 ~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~  350 (712)
                       |++..    .+..+..+.....     +.+.-..+|.+....+......        ...                .++
T Consensus        69 -Pdn~~----Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP  143 (517)
T PF12569_consen   69 -PDNYD----YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP  143 (517)
T ss_pred             -CCcHH----HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence             44432    2555555552222     3445555555543332210000        000                011


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS---------PASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~  421 (712)
                      .+..++-.+|....+..-...++...+........         .......++++.+|..|...|++++|++++++||  
T Consensus       144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI--  221 (517)
T PF12569_consen  144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI--  221 (517)
T ss_pred             hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence            22222333333222222222222222222211110         1122345688999999999999999999999999  


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                          ...|..+..|...|.++-..|++.+|..+++.|..+        +...-.+....+..+.+.|+.++|...+..-.
T Consensus       222 ----~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  222 ----EHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             ----hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence                567888999999999999999999999999999888        67667777888999999999999988776543


Q ss_pred             HHHhcCCCCCCC--hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005139          502 RIYEKPVPGVPP--EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (712)
Q Consensus       502 ~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (712)
                      +--..  +..+.  ....+.....|.+|.+.|++..|++.|..+..++.....+..
T Consensus       290 r~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQf  343 (517)
T PF12569_consen  290 REDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQF  343 (517)
T ss_pred             CCCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            32110  00111  123445567799999999999999999999999988755443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.42  E-value=2.6e-11  Score=118.90  Aligned_cols=187  Identities=14%  Similarity=0.113  Sum_probs=148.4

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .....+..++.+|..++..|++++|+..|++++...     ++++....++..+|.++...|++++|+..|+++++....
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            345567789999999999999999999999998872     224455678899999999999999999999999998543


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHhCCCCCCcH----------HHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESM--------NELEQAIKLLQKALKIYNDAPGQQSTV----------AGIEAQMGVMY  568 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~la~~~  568 (712)
                            .+....+++.+|.++...        |++++|+..|++++...+.........          ......+|.+|
T Consensus       103 ------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  176 (235)
T TIGR03302       103 ------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY  176 (235)
T ss_pred             ------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  444556788999999876        899999999999998766542111000          01124678999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +..|++.+|+..|++++..+..     .+....++..+|.++...|++++|..+++.....
T Consensus       177 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       177 LKRGAYVAAINRFETVVENYPD-----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHcCChHHHHHHHHHHHHHCCC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999999999999886321     2445689999999999999999999988876654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=4.8e-08  Score=97.64  Aligned_cols=420  Identities=14%  Similarity=0.078  Sum_probs=275.9

Q ss_pred             HHHHHHHHHHHHHHcC--CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHH
Q 005139          264 LVMCLHVIAAIYCSLG--QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      .+.++..+|..+...|  +...++.+++......     +.. ...+.+...+|.++ ....+++.|..+++++..+.+.
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~-----is~-~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~   79 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQ-----ISF-LVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS   79 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccC-----ChH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            4667888899999898  8899999998877653     222 23556678888665 5678999999999999998766


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          341 VLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS  419 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al  419 (712)
                      +..-. .....++..|+.+|.... .+..|...+++++++.....    .+....++.|+.++....++..|++.+.-..
T Consensus        80 ip~fy-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p----~wsckllfQLaql~~idkD~~sA~elLavga  154 (629)
T KOG2300|consen   80 IPSFY-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP----YWSCKLLFQLAQLHIIDKDFPSALELLAVGA  154 (629)
T ss_pred             cccHH-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence            42111 234567788999998877 89999999999999986654    4456678899999999999999999864322


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHH-HHHcCCHHHHHHH
Q 005139          420 MTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-HPA-VASVFVRLADM-YNRTGKLRESKSY  496 (712)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~-~~~~~~~la~~-~~~~g~~~~A~~~  496 (712)
                      ..+................+.++...-+..+.......+-.+.....+.. +.+ .-..|..+-.. |...|+...+...
T Consensus       155 ~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~  234 (629)
T KOG2300|consen  155 ESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPA  234 (629)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHH
Confidence            11110011111112222344455555566666677777666665543321 111 12233333333 4556887777766


Q ss_pred             HHHHHHHHhcCCC----------CCCChhHH--------HHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHhCCCCCC-
Q 005139          497 CENALRIYEKPVP----------GVPPEEIA--------SGLTDVSSIY--ESMNELEQAIKLLQKALKIYNDAPGQQS-  555 (712)
Q Consensus       497 ~~~al~~~~~~~~----------~~~~~~~~--------~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~-  555 (712)
                      +++.-........          +.+.+...        .++..+-.+-  ...|-+++|.++-++++....+....+- 
T Consensus       235 lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~  314 (629)
T KOG2300|consen  235 LKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLM  314 (629)
T ss_pred             HHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccch
Confidence            6654433222211          12222211        1111221111  2457789999999999988766533331 


Q ss_pred             ------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          556 ------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--RKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (712)
Q Consensus       556 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  627 (712)
                            .....+..+..+-.-.|++.+|++-...+.+.+.+...  --....+.+.+.+|..+..-+.++.|...|..|.
T Consensus       315 srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~  394 (629)
T KOG2300|consen  315 SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEAT  394 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHH
Confidence                  11223445666777789999999999999988876654  1223345788899999999999999999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChh-------HHHHHHHHHHHHHHhccHHHHHHHHH
Q 005139          628 SILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPD-------VDDEKRRLAELLKEAGRVRSRKAQSL  693 (712)
Q Consensus       628 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~l  693 (712)
                      +...+.     .-.+.+-.++|.+|...|+       .+.+++.+..       -..+++..|...+.++++.||+ ..+
T Consensus       395 k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK-~~l  468 (629)
T KOG2300|consen  395 KLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK-RFL  468 (629)
T ss_pred             HhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence            885442     1244567789999999998       3334433221       2446777788888999999999 999


Q ss_pred             HHHHHhc
Q 005139          694 ETLLDAN  700 (712)
Q Consensus       694 ~~~l~~~  700 (712)
                      .+.|+..
T Consensus       469 ~e~Lkma  475 (629)
T KOG2300|consen  469 RETLKMA  475 (629)
T ss_pred             HHHHhhc
Confidence            8888754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.39  E-value=3.5e-11  Score=118.00  Aligned_cols=182  Identities=12%  Similarity=0.030  Sum_probs=146.9

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      ++.....++.+|..++..|++++|+..+++++...+..     +....+++.+|.++...|++++|+..|++++...   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---  100 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---  100 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence            34567889999999999999999999999998876533     3334578999999999999999999999988543   


Q ss_pred             CCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHH--------------HHHHHHHH
Q 005139          426 DQDAEVASVDCSIGDTYLSL--------SRYDEAGFAYQKALTAFKTNKGENHPAVAS--------------VFVRLADM  483 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~la~~  483 (712)
                      ++.+....+++.+|.++...        |++++|+..|++++.....     ++....              ....+|.+
T Consensus       101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-----SEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566788999999876        8899999999999877221     211111              12467889


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                      |...|++.+|+..|++++..+..      .+....++..+|.++...|++++|..+++.....
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPD------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCCC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999998544      4556889999999999999999999988776543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.39  E-value=6.5e-11  Score=119.04  Aligned_cols=208  Identities=15%  Similarity=0.024  Sum_probs=169.6

Q ss_pred             HHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (712)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (712)
                      +...+++++|+..+.+++.+.     |.+.    .+|...+.++..+| ++++++.++.+++..        +|....+|
T Consensus        47 l~~~e~serAL~lt~~aI~ln-----P~~y----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW  109 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN-----PGNY----TVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIW  109 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-----chhH----HHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHh
Confidence            334678899999999999886     4443    35889999999998 689999999999988        78888899


Q ss_pred             HHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          354 RYLAEAHVQALQF--SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (712)
Q Consensus       354 ~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (712)
                      ...+.++...|+.  ++++.++.+++++.+++.        .+|...+.++...|++++|++++.+++.      .++..
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--------~AW~~R~w~l~~l~~~~eeL~~~~~~I~------~d~~N  175 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--------HAWSHRQWVLRTLGGWEDELEYCHQLLE------EDVRN  175 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHH------HCCCc
Confidence            9999999888874  788999999998876653        4899999999999999999999999984      45566


Q ss_pred             HHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 005139          432 ASVDCSIGDTYLSL---SRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENA  500 (712)
Q Consensus       432 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  500 (712)
                      ..+++.++.+....   |.+    ++++.+..+++.+        .|....+|..++.++..    .++..+|+..+.++
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~  247 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV  247 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence            78888888888765   333    4788888899988        88889999999999988    45567788888887


Q ss_pred             HHHHhcCCCCCCChhHHHHHHHHHHHHHHc
Q 005139          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (712)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (712)
                      +..         .+....++..|+.+|...
T Consensus       248 ~~~---------~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        248 LSK---------DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             hcc---------cCCcHHHHHHHHHHHHhh
Confidence            664         333467788899998763

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.37  E-value=6.9e-11  Score=118.45  Aligned_cols=227  Identities=15%  Similarity=0.130  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                      .+..+...|.+|...+++++|...|.++.....+...  ....+..+...+.+|... ++++|+.+|++|+.++...+..
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~  110 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF  110 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence            4556677788888999999999999999999887553  355567777777777666 9999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          429 AEVASVDCSIGDTYLSL-SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      ...+.++..+|.+|... |++++|+.+|++|++++....  .......++..+|.++...|+|++|++.|++........
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999 999999999999999998875  245567788999999999999999999999988764332


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNA  584 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a  584 (712)
                        ..........+...+.+++..|++..|...+++.....+...+  ..-..++..|..++..  ...+..|+.-|...
T Consensus       189 --~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  189 --NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             --CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             --cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence              1123334456677888999999999999999988776654422  2333455556666543  23455555555544

>PLN02789 farnesyltranstransferase

Probab=99.36  E-value=3.4e-10  Score=113.92  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=177.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                      +-.++...+++++|+..+.+++.+        +|....+|...+.++..+| ++++++.++++++..         .|..
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------npkn  105 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------NPKN  105 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------CCcc
Confidence            334455678999999999999999        8999999999999999998 689999999999998         3445


Q ss_pred             HHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005139          517 ASGLTDVSSIYESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (712)
                      ..+|...+.++...|+.  ++++.++.+++++.++.       ..++...+.++...|++++|++++.++++.       
T Consensus       106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-------  171 (320)
T PLN02789        106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE-------  171 (320)
T ss_pred             hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------
Confidence            67799999999888874  77899999999887665       468999999999999999999999999986       


Q ss_pred             CChHHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----------
Q 005139          595 KSAFFGVALNQMGLACVQR---YSI----NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----------  657 (712)
Q Consensus       595 ~~~~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----------  657 (712)
                       .+....+|+..+.++...   |.+    ++++.+..+++.+        .|++..++..++.++...++          
T Consensus       172 -d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~  242 (320)
T PLN02789        172 -DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSS  242 (320)
T ss_pred             -CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence             122347888888887765   323    5788888899998        99999999999999988432          


Q ss_pred             -hhhhCCCChhHHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHhcc
Q 005139          658 -EEKLGTANPDVDDEKRRLAELLKEAG------------------RVRSRKAQSLETLLDANS  701 (712)
Q Consensus       658 -~~~l~~~~p~~~~~~~~la~~~~~~g------------------~~~~A~~~~l~~~l~~~p  701 (712)
                       ...+....|....++.-|+.+|....                  ..++|. +.++.+-+.+|
T Consensus       243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~d~  304 (320)
T PLN02789        243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ-AVCSELEVADP  304 (320)
T ss_pred             HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH-HHHHHHHhhCc
Confidence             22233457788888889999998632                  235677 77777744333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=3.6e-09  Score=103.67  Aligned_cols=303  Identities=17%  Similarity=0.079  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc
Q 005139          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (712)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (712)
                      .....-|..-+..|+ |.+|.....++-+.       .  +....+|..-+.+...+|+++.|-.++.++-+..     +
T Consensus        85 ~~~~~egl~~l~eG~-~~qAEkl~~rnae~-------~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~  149 (400)
T COG3071          85 RKALNEGLLKLFEGD-FQQAEKLLRRNAEH-------G--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----G  149 (400)
T ss_pred             HHHHHHHHHHHhcCc-HHHHHHHHHHhhhc-------C--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----C
Confidence            344555666677776 88888877775432       2  2235567777888999999999999999998873     2


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (712)
Q Consensus       302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (712)
                      +.   ........+.+....|++..|..-..++++.        .|....++.....+|...|+|.+...++.+.-+..-
T Consensus       150 ~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~  218 (400)
T COG3071         150 DD---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL  218 (400)
T ss_pred             Cc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence            22   3445888999999999999999999999988        677778888899999999999998888776543211


Q ss_pred             hcCCCCCHHHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          382 DNGSPASLEEAADRRLMGLI--CETKGDHEAALE---HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (712)
Q Consensus       382 ~~~~~~~~~~a~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (712)
                          -...+ ..-+-..+..  +....+-..+..   +++..   -.....+|.   +...++.-+...|++++|.+..+
T Consensus       219 ----l~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~---pr~lr~~p~---l~~~~a~~li~l~~~~~A~~~i~  287 (400)
T COG3071         219 ----LSDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ---PRKLRNDPE---LVVAYAERLIRLGDHDEAQEIIE  287 (400)
T ss_pred             ----CChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHhc---cHHhhcChh---HHHHHHHHHHHcCChHHHHHHHH
Confidence                11111 1112222211  122222222222   22211   111223333   34455778889999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (712)
                      ++++..      .++.   ....++  ...-++...=++..++.++.         +++.+..+..||.++++.+.|.+|
T Consensus       288 ~~Lk~~------~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA  347 (400)
T COG3071         288 DALKRQ------WDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKA  347 (400)
T ss_pred             HHHHhc------cChh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHH
Confidence            998861      1222   111111  23457777777777777776         444557899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                      ..+|+.|+...+..        ..+..+|.++.++|+..+|.+.+++++.++.
T Consensus       348 ~~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         348 SEALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            99999998876544        4678899999999999999999999996543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=1.1e-07  Score=100.66  Aligned_cols=391  Identities=18%  Similarity=0.144  Sum_probs=222.8

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---hCCCC
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---LGETD  346 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~  346 (712)
                      .|-..|...|.|++|.++.+.--.+        |   .-..|++.|..+...++.+.|+++|+++-...-++   +..+.
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~~DRi--------H---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p  899 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAETKDRI--------H---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP  899 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhhccce--------e---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence            3456677777777777666542222        1   12358999999999999999999999863221110   11111


Q ss_pred             h---------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          347 P---------RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       347 ~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                      +         .....|...|......|+.+.|+.+|..|-+                |+.+..+.+.+|+.++|..+.++
T Consensus       900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------------~fs~VrI~C~qGk~~kAa~iA~e  963 (1416)
T KOG3617|consen  900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------------YFSMVRIKCIQGKTDKAARIAEE  963 (1416)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------------hhhheeeEeeccCchHHHHHHHh
Confidence            1         1124566778888888888888888887654                34555666667777776655543


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHhcCCCCHHH------HHHHHHHHHHHH
Q 005139          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL------TAFKTNKGENHPAV------ASVFVRLADMYN  485 (712)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~------~~~~~~la~~~~  485 (712)
                      .       ++    -.+.+.+|+.|...|++.+|+..|.+|-      .++++..-.+.-.+      ..-+...|..|.
T Consensus       964 s-------gd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen  964 S-------GD----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred             c-------cc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence            2       21    2456678888888888888887776653      33333210000000      000112233333


Q ss_pred             HcC-CHHHHHHHHHH------------------HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH------
Q 005139          486 RTG-KLRESKSYCEN------------------ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL------  540 (712)
Q Consensus       486 ~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------  540 (712)
                      ..| .+..|..+|.+                  ++++..+.+....+   +..+...+..+....+|++|..++      
T Consensus      1033 e~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD---p~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1033 ELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD---PKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred             HcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333 44444444433                  33443333323333   455778888999999999998765      


Q ss_pred             HHHHHHHHhCC----------------CCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCCC--
Q 005139          541 QKALKIYNDAP----------------GQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA------IGER--  594 (712)
Q Consensus       541 ~~al~~~~~~~----------------~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~--  594 (712)
                      +.|+.++....                +..  .....++..+|.++.++|.|..|-+-|.+|-..++.      .|+.  
T Consensus      1110 ~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQK 1189 (1416)
T ss_pred             HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcce
Confidence            44555544320                111  134567889999999999999999888876443322      1111  


Q ss_pred             ---------------------------CChH----------HHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHH
Q 005139          595 ---------------------------KSAF----------FGVALNQMGLACV--------QRYSINEAVELFEEARSI  629 (712)
Q Consensus       595 ---------------------------~~~~----------~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~  629 (712)
                                                 ..+.          .+.++-.||..|.        ...+|++|...+++|...
T Consensus      1190 I~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kC 1269 (1416)
T KOG3617|consen 1190 IRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKC 1269 (1416)
T ss_pred             EEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHH
Confidence                                       0110          1124444554443        335677888777777776


Q ss_pred             HHHhcCCCChhhH--HHHHHHHHHHHHccc--------------hhhh--CCCCh---hHHHHHHHHHHHHHHhccHHHH
Q 005139          630 LEQECGPYHPDTL--GVYSNLAGTYDAIGR--------------EEKL--GTANP---DVDDEKRRLAELLKEAGRVRSR  688 (712)
Q Consensus       630 ~~~~~~~~~p~~~--~~~~~La~~~~~~g~--------------~~~l--~~~~p---~~~~~~~~la~~~~~~g~~~~A  688 (712)
                      +.+.-..++..+.  .....++.+-..+..              -+.+  .+..|   .....+..|.+.+....+|..|
T Consensus      1270 l~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~A 1349 (1416)
T KOG3617|consen 1270 LLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPA 1349 (1416)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHH
Confidence            6655433332211  111112221111111              1111  12222   2345667778888899999999


Q ss_pred             HHHHHHHHHHhccc
Q 005139          689 KAQSLETLLDANSR  702 (712)
Q Consensus       689 ~~~~l~~~l~~~p~  702 (712)
                      . +.++++-...|.
T Consensus      1350 y-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1350 Y-RALTELQKKVPN 1362 (1416)
T ss_pred             H-HHHHHHhhcCCc
Confidence            9 999999888887

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.28  E-value=9.6e-08  Score=98.76  Aligned_cols=321  Identities=13%  Similarity=0.087  Sum_probs=211.4

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      +|.....|...  +-+..|+..+-+..|.+|+...........+  ...+..+|..|...|+.+.|...|+++...-  .
T Consensus       345 n~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y  418 (835)
T KOG2047|consen  345 NPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKVP--Y  418 (835)
T ss_pred             CCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--c
Confidence            45555555444  4455788899999999998755333323333  3468899999999999999999999997421  1


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCCH------HHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT----NKGENHP------AVASVFVRLADMYNRTGKLRESKS  495 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~  495 (712)
                      +.-.+++.+|+..|..-....+++.|+.+.++|...-..    .+....|      ....+|..++.+....|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            223467889999999999999999999999998765221    1111122      234566777777788888888899


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 005139          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS  575 (712)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  575 (712)
                      .|++.+.+.-.         .+.+..+.|..+....-+++|.+.|++.+.+++-.  ....+...|......-+.....+
T Consensus       499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p--~v~diW~tYLtkfi~rygg~klE  567 (835)
T KOG2047|consen  499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP--NVYDIWNTYLTKFIKRYGGTKLE  567 (835)
T ss_pred             HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc--cHHHHHHHHHHHHHHHhcCCCHH
Confidence            99999888433         45667888999999999999999999998876421  11233333433333344445789


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH--HHHH
Q 005139          576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA--GTYD  653 (712)
Q Consensus       576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La--~~~~  653 (712)
                      .|..+|++|++.+.      +...-.++...+.+-..-|-...|+..|++|-..       .++...-.++++-  .+-.
T Consensus       568 raRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-------v~~a~~l~myni~I~kaae  634 (835)
T KOG2047|consen  568 RARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-------VKEAQRLDMYNIYIKKAAE  634 (835)
T ss_pred             HHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHH
Confidence            99999999998542      2223345666677777778888888888886543       1333322222221  1111


Q ss_pred             Hccc------hhhhCCCCh--hHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005139          654 AIGR------EEKLGTANP--DVDDEKRRLAELLKEAGRVRSRKAQSLETLL  697 (712)
Q Consensus       654 ~~g~------~~~l~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l  697 (712)
                      ..|-      +++....-|  +........+.+-.+.|..+.|. ..|.-.-
T Consensus       635 ~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~s  685 (835)
T KOG2047|consen  635 IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGS  685 (835)
T ss_pred             HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhh
Confidence            1222      222222223  33445667788888999999998 6665443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=6.4e-09  Score=97.44  Aligned_cols=381  Identities=14%  Similarity=0.029  Sum_probs=236.1

Q ss_pred             ccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005139          197 MKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC  276 (712)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~  276 (712)
                      +....+|..+|+.+.......|.....+..+|.||+...+ |..|.++|++.-.++         |.........+..++
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH---------PELEQYRLYQAQSLY   89 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHH
Confidence            3455678888877778888899999999999999999987 999999999876655         555555555678888


Q ss_pred             HcCCHhHHHHHHHHhhc----------hhhhh-------hc-----ccch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          277 SLGQYNEAIPVLEQSIE----------IPVIE-------EG-----QEHA-LAKFAGHMQLGDTYAMLGQLENSLMCYTT  333 (712)
Q Consensus       277 ~~g~~~~A~~~~~~al~----------~~~~~-------~~-----~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  333 (712)
                      ..+.+.+|+........          +...+       .+     ...| ...+....+.|.+.++.|+++.|++-|+.
T Consensus        90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa  169 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA  169 (459)
T ss_pred             HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence            88888888876654443          11000       00     0001 11334578899999999999999999999


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC----------C-----------CHHHH
Q 005139          334 GLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP----------A-----------SLEEA  392 (712)
Q Consensus       334 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~-----------~~~~a  392 (712)
                      +++..        -.....-++++.+++..++++.|+++..+.++..-+....          +           .....
T Consensus       170 Alqvs--------GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~  241 (459)
T KOG4340|consen  170 ALQVS--------GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV  241 (459)
T ss_pred             HHhhc--------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence            99882        2233455789999999999999999998888765433211          0           01234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      .+++..+.++++.|+++.|.+.+...-    -...+...+.++.+++..- ..+++.+...-++-.+.+        .|.
T Consensus       242 eAfNLKaAIeyq~~n~eAA~eaLtDmP----PRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--------nPf  308 (459)
T KOG4340|consen  242 EAFNLKAAIEYQLRNYEAAQEALTDMP----PRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--------NPF  308 (459)
T ss_pred             HHhhhhhhhhhhcccHHHHHHHhhcCC----CcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--------CCC
Confidence            566677888899999998877664221    0111112234566666443 345666666666666665        444


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHhCC
Q 005139          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      -...+.++-.+|++..-|+-|-..+-+--.+.        .......++.|-..+ ..+-..++|.+-+...-.......
T Consensus       309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lT--------yk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kL  380 (459)
T KOG4340|consen  309 PPETFANLLLLYCKNEYFDLAADVLAENAHLT--------YKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKL  380 (459)
T ss_pred             ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchh--------HHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45667777788888766666555443211110        011122223333222 234456666665554433322110


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  631 (712)
                      .   .. .+-......-........|++-|+++++++           ..++...+.+|+...+|..+...|+...+...
T Consensus       381 R---kl-Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----------LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~  445 (459)
T KOG4340|consen  381 R---KL-AIQVQEARHNRDDEAIRKAVNEYDETLEKY-----------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN  445 (459)
T ss_pred             H---HH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence            0   00 000011111111112345666677776652           34667788999999999999999999988754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.20  E-value=4.5e-08  Score=96.15  Aligned_cols=301  Identities=14%  Similarity=0.033  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (712)
                      ....-|..-+..|+|.+|.....++-+..      +.|   .-.+..-+.+-..+|+++.|-.++.++-+..       .
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~------e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~  149 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHG------EQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------G  149 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcC------cch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------C
Confidence            34445667777899999999999865542      222   2246777888899999999999999988772       1


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      ..........+.+....|+++.|..-..++++..+...        .++.....+|...|++.....++.+..+.   .-
T Consensus       150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka---~~  218 (400)
T COG3071         150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--------EVLRLALRAYIRLGAWQALLAILPKLRKA---GL  218 (400)
T ss_pred             CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--------HHHHHHHHHHHHhccHHHHHHHHHHHHHc---cC
Confidence            23445677888999999999999999999998876653        36778889999999999999888765321   11


Q ss_pred             CChhHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          427 QDAEVASVDCSIGDT--YLSLSRYDEAGF---AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       427 ~~~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                      .......-+-+.+..  +....+-..+..   +++..-..        -...+.+...++.-+...|+.++|.+..++++
T Consensus       219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L  290 (400)
T COG3071         219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--------LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL  290 (400)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            112222222222221  112222222222   22221111        11123455667888899999999999999999


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (712)
                      +....      . .   ....++  ...-+++..=++..++.++..++.+       .++..||.+|++.+.|.+|..+|
T Consensus       291 k~~~D------~-~---L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p-------~L~~tLG~L~~k~~~w~kA~~~l  351 (400)
T COG3071         291 KRQWD------P-R---LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDP-------LLLSTLGRLALKNKLWGKASEAL  351 (400)
T ss_pred             HhccC------h-h---HHHHHh--hcCCCCchHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHhhHHHHHHHHH
Confidence            87322      1 1   122222  2345677777777777776654442       57889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (712)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  630 (712)
                      +.|+...       +  .+..+..+|.++.++|+..+|.+.+++++-++
T Consensus       352 eaAl~~~-------~--s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         352 EAALKLR-------P--SASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHhcC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            9998751       1  24678889999999999999999999999654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.20  E-value=9.1e-07  Score=91.76  Aligned_cols=432  Identities=14%  Similarity=0.135  Sum_probs=248.1

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc
Q 005139          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ  301 (712)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  301 (712)
                      .+++.....+..+|+ ...-...|.+||..+...    .+..   .+-..-......+-.+-++..|++-|++.+     
T Consensus       103 RIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvt----qH~r---IW~lyl~Fv~~~~lPets~rvyrRYLk~~P-----  169 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVT----QHDR---IWDLYLKFVESHGLPETSIRVYRRYLKVAP-----  169 (835)
T ss_pred             HHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchH----hhcc---chHHHHHHHHhCCChHHHHHHHHHHHhcCH-----
Confidence            344555556677775 777778888887765322    1111   111112233344555566666666666642     


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------------HHHhCC
Q 005139          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ-------------------------------------KQVLGE  344 (712)
Q Consensus       302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------------------~~~~~~  344 (712)
                      ...       ...-..+...+++++|...|...+..-                                     +..++.
T Consensus       170 ~~~-------eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r  242 (835)
T KOG2047|consen  170 EAR-------EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR  242 (835)
T ss_pred             HHH-------HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence            111       112223334445555544444332211                                     000111


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------------CHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------------DHEAA  411 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-------------~~~~A  411 (712)
                      -.......|..||..|...|.++.|...|++++...-...+-.....+.+.+.-..+...++             +++-.
T Consensus       243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~  322 (835)
T KOG2047|consen  243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH  322 (835)
T ss_pred             CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence            12356778999999999999999999999999976543332111111111111111111111             12222


Q ss_pred             HHHHHHHHHHHH------hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005139          412 LEHLVLASMTMI------ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (712)
Q Consensus       412 ~~~~~~al~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (712)
                      +..|+..+....      ....++.....+  +-.+-+..|+..+-+..|.+|+....-...  .......|..+|.+|.
T Consensus       323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe  398 (835)
T KOG2047|consen  323 MARFESLMNRRPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYE  398 (835)
T ss_pred             HHHHHHHHhccchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHH
Confidence            233333321100      001222223333  334555678899999999999876432221  2234678899999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh-----CCCCCC-----
Q 005139          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND-----APGQQS-----  555 (712)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~-----  555 (712)
                      ..|+.+.|...|+++...-=     ....+.+.+|...|..-+...+++.|+.++++|..+-..     ..+..+     
T Consensus       399 ~~~~l~~aRvifeka~~V~y-----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl  473 (835)
T KOG2047|consen  399 NNGDLDDARVIFEKATKVPY-----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL  473 (835)
T ss_pred             hcCcHHHHHHHHHHhhcCCc-----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence            99999999999999988621     223457889999999999999999999999998754221     111111     


Q ss_pred             -cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139          556 -TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (712)
Q Consensus       556 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (712)
                       ....+|..++.+....|-++.....|++.+++.-     -.|   .+..+.|..+....-+++|.+.|++.+.++    
T Consensus       474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLri-----aTP---qii~NyAmfLEeh~yfeesFk~YErgI~LF----  541 (835)
T KOG2047|consen  474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----ATP---QIIINYAMFLEEHKYFEESFKAYERGISLF----  541 (835)
T ss_pred             HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccC----
Confidence             1234566677777778888888888888887621     122   456677878877778888888888888773    


Q ss_pred             CCCChhhHHHHHHHHHHHH-Hccc----------hhhhCCCChhHHHHHH-HHHHHHHHhccHHHHHHHHHHHHH
Q 005139          635 GPYHPDTLGVYSNLAGTYD-AIGR----------EEKLGTANPDVDDEKR-RLAELLKEAGRVRSRKAQSLETLL  697 (712)
Q Consensus       635 ~~~~p~~~~~~~~La~~~~-~~g~----------~~~l~~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~l~~~l  697 (712)
                        ..|...+.|...-..+. +.|-          ++.+..-.|..+..++ ..+.+-..-|-...|. ..|+++-
T Consensus       542 --k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~am-siyerat  613 (835)
T KOG2047|consen  542 --KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAM-SIYERAT  613 (835)
T ss_pred             --CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH
Confidence              24555444443322222 2222          4444444455555433 3455555667777777 7776653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.20  E-value=2.7e-09  Score=118.58  Aligned_cols=286  Identities=12%  Similarity=0.084  Sum_probs=194.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                      +.-+|....++..|...+...+++++|+..++.+++..+...        ..|+.+|.++...+++.++...  .     
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--------~~yy~~G~l~~q~~~~~~~~lv--~-----   88 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--------SALYISGILSLSRRPLNDSNLL--N-----   88 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--------ehHHHHHHHHHhhcchhhhhhh--h-----
Confidence            444688899999999999999999999999999988876654        3788899999999987666543  2     


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                                     ++.......++ .++.++...+..        .+..-.+++.||.||..+|++++|...|+++++
T Consensus        89 ---------------~l~~~~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~  144 (906)
T PRK14720         89 ---------------LIDSFSQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVK  144 (906)
T ss_pred             ---------------hhhhcccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence                           23333344455 344444433332        445556888999999999999999999999998


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      +         .+..+.+++++|..|... ++++|+.++.+|+..+-+. ........+|..  .+.....+++.=..+.+
T Consensus       145 ~---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~  211 (906)
T PRK14720        145 A---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-KQYVGIEEIWSK--LVHYNSDDFDFFLRIER  211 (906)
T ss_pred             c---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-hcchHHHHHHHH--HHhcCcccchHHHHHHH
Confidence            8         455678899999999988 9999999999998875543 222222222222  12222233333222222


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhhhC
Q 005139          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLG  662 (712)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~  662 (712)
                      +....   .+   .......+.-+=..|...++|++++.+++.++++        .|.+..+...|+.+|...-      
T Consensus       212 ki~~~---~~---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~~kY------  271 (906)
T PRK14720        212 KVLGH---RE---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYKEKY------  271 (906)
T ss_pred             HHHhh---hc---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHHHHc------
Confidence            22221   11   1223456666778899999999999999999999        8889999999999998332      


Q ss_pred             CCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          663 TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       663 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ..|+...+. ..+..+-..-..+..|+ ..|+..+-..+.
T Consensus       272 ~~~~~~ee~-l~~s~l~~~~~~~~~~i-~~fek~i~f~~G  309 (906)
T PRK14720        272 KDHSLLEDY-LKMSDIGNNRKPVKDCI-ADFEKNIVFDTG  309 (906)
T ss_pred             cCcchHHHH-HHHhccccCCccHHHHH-HHHHHHeeecCC
Confidence            335544432 33444433344667788 888887765554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.18  E-value=5e-10  Score=99.58  Aligned_cols=126  Identities=13%  Similarity=0.058  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH
Q 005139          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD  449 (712)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  449 (712)
                      ..++++++++.+..           +..+|.++...|++++|+.+|++++      ...|....++..+|.++...|+++
T Consensus        13 ~~~~~~al~~~p~~-----------~~~~g~~~~~~g~~~~A~~~~~~al------~~~P~~~~a~~~lg~~~~~~g~~~   75 (144)
T PRK15359         13 EDILKQLLSVDPET-----------VYASGYASWQEGDYSRAVIDFSWLV------MAQPWSWRAHIALAGTWMMLKEYT   75 (144)
T ss_pred             HHHHHHHHHcCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHHHhhHH
Confidence            45678888776542           4568999999999999999999998      457778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139          450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES  529 (712)
Q Consensus       450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  529 (712)
                      +|+..|++++.+        .|....+++++|.++...|++++|+..|++++.+.         |.....+..++.+...
T Consensus        76 ~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---------p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         76 TAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---------YADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHH
Confidence            999999999998        88889999999999999999999999999999983         3345556666665443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.17  E-value=5.9e-10  Score=99.13  Aligned_cols=127  Identities=11%  Similarity=0.015  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005139          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (712)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (712)
                      ..+|++++++         .|..   +..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|+
T Consensus        13 ~~~~~~al~~---------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSV---------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-------WRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHc---------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHHhh
Confidence            4577888887         3332   6678999999999999999999999875544       4788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005139          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (712)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  653 (712)
                      +++|+..|++++.+        .+....+++.+|.++...|++++|+..|++++.+        .|+....+.+++.+..
T Consensus        74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHH
Confidence            99999999999985        2334589999999999999999999999999999        8888888888887765


Q ss_pred             Hc
Q 005139          654 AI  655 (712)
Q Consensus       654 ~~  655 (712)
                      ..
T Consensus       138 ~l  139 (144)
T PRK15359        138 MV  139 (144)
T ss_pred             HH
Confidence            43

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=3.6e-07  Score=96.86  Aligned_cols=341  Identities=16%  Similarity=0.140  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139          222 PLLLKQARELISSGDNPQKALELAL--------RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (712)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~--------~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~  293 (712)
                      .+|-++|.......+ .+-|.-+.-        +|++..++.  +.  ...+    ..|.+...+|-.++|..+|.+.-.
T Consensus       758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~--~~--e~ea----kvAvLAieLgMlEeA~~lYr~ckR  828 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQN--GE--EDEA----KVAVLAIELGMLEEALILYRQCKR  828 (1416)
T ss_pred             HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhC--Cc--chhh----HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            355666776666665 666655432        222222111  11  1112    235666778888888888887543


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC  373 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  373 (712)
                                       +-.|-..|...|.+++|.+..+.-          +...+..+|++.|..+...++.+.|+++|
T Consensus       829 -----------------~DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~Aleyy  881 (1416)
T KOG3617|consen  829 -----------------YDLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYY  881 (1416)
T ss_pred             -----------------HHHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence                             334556788888888887665532          22345678899999999999999999999


Q ss_pred             HHHHH----HH---HhcCCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          374 QMALD----IH---KDNGSP-----ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (712)
Q Consensus       374 ~~al~----~~---~~~~~~-----~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (712)
                      +++-.    +.   ......     .....-..|...|..+...|+.+.|+.+|..|.              -|+.+-.+
T Consensus       882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------------D~fs~VrI  947 (1416)
T KOG3617|consen  882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------------DYFSMVRI  947 (1416)
T ss_pred             HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------------hhhhheee
Confidence            87631    11   111000     000012356777888888888888888888764              24555666


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHhcCCCCCCChh
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA------LRIYEKPVPGVPPEE  515 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~  515 (712)
                      ...+|+.++|..+.++.-             ...+.+.||+.|...|++.+|+.+|.+|      ++++++..   -...
T Consensus       948 ~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~ 1011 (1416)
T KOG3617|consen  948 KCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR 1011 (1416)
T ss_pred             EeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH
Confidence            777888888876655432             2356788999999999999999988765      44444421   0111


Q ss_pred             HHH--------HHHHHHHHHHHcc-cHHHHHHHHHHH------------------HHHHHhCCCCCCcHHHHHHHHHHHH
Q 005139          516 IAS--------GLTDVSSIYESMN-ELEQAIKLLQKA------------------LKIYNDAPGQQSTVAGIEAQMGVMY  568 (712)
Q Consensus       516 ~~~--------~~~~la~~~~~~g-~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~~~~la~~~  568 (712)
                      .+.        -+...|..|...| +.+.|..+|.+|                  +++........ .-+.++...+..+
T Consensus      1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~-sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG-SDPKLLRRCADFF 1090 (1416)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC-CCHHHHHHHHHHH
Confidence            100        0112334455555 556666655443                  33333322222 2245677788889


Q ss_pred             HHcCCHHHHHHHHHH------HHHHHHHhC-----------------CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          569 YMLGNYSDSYDSFKN------AISKLRAIG-----------------ERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       569 ~~~g~~~~A~~~~~~------al~~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      ....+|++|..++-.      |+.++..-+                 .........++..+|.++.++|.|..|-+-|.+
T Consensus      1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence            999999999877544      444443211                 111122346889999999999999999999988


Q ss_pred             HHHH
Q 005139          626 ARSI  629 (712)
Q Consensus       626 al~~  629 (712)
                      |-..
T Consensus      1171 AGdK 1174 (1416)
T KOG3617|consen 1171 AGDK 1174 (1416)
T ss_pred             hhhH
Confidence            8553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.17  E-value=1.6e-09  Score=119.68  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=141.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR  396 (712)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  396 (712)
                      +....+....+...+-+++.+.+.     .+....++..||.+....|.+++|..+++.++++.|+.        ..+..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------~~a~~  124 (694)
T PRK15179         58 VLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------SEAFI  124 (694)
T ss_pred             HHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------HHHHH
Confidence            334445555555556666666554     47778999999999999999999999999999998765        34788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005139          397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (712)
Q Consensus       397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (712)
                      .++.++...+++++|+..+++++      ...|+.+..++.+|.++..+|++++|+.+|++++..        +|....+
T Consensus       125 ~~a~~L~~~~~~eeA~~~~~~~l------~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~  190 (694)
T PRK15179        125 LMLRGVKRQQGIEAGRAEIELYF------SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENG  190 (694)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHh------hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHH
Confidence            99999999999999999999998      567888999999999999999999999999999985        7888899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          477 FVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      +..+|.++...|+.++|...|+++++....
T Consensus       191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        191 YVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999998643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.17  E-value=1.6e-08  Score=106.31  Aligned_cols=251  Identities=18%  Similarity=0.146  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005139          238 PQKALELALRAAKSFEIGAN----------GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK  307 (712)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  307 (712)
                      .+++....+.+.+.++....          ...-|.....-..++..+...|-...|+..|++.                
T Consensus       361 veR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl----------------  424 (777)
T KOG1128|consen  361 VERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL----------------  424 (777)
T ss_pred             hhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------------
Confidence            56666666665555443211          1111334555667899999999999999999863                


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                       ..|.....||...|+..+|..+..+-++-         +..+..|..+|.+...       ..+|+++.++.....   
T Consensus       425 -emw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~s---  484 (777)
T KOG1128|consen  425 -EMWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHD-------PSLYEKAWELSNYIS---  484 (777)
T ss_pred             -HHHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccC-------hHHHHHHHHHhhhhh---
Confidence             24777889999999999998888776652         3444556666555544       455555555554332   


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                          +.+...+|......++|.++..+++.++.      ..+....+|+.+|.+..+.+++..|...|..++.+      
T Consensus       485 ----arA~r~~~~~~~~~~~fs~~~~hle~sl~------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------  548 (777)
T KOG1128|consen  485 ----ARAQRSLALLILSNKDFSEADKHLERSLE------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------  548 (777)
T ss_pred             ----HHHHHhhccccccchhHHHHHHHHHHHhh------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------
Confidence                23556677777789999999999999884      56777889999999999999999999999999998      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                        .|+...+|++++..|...++-.+|...+.+|++.-.+         ...+|.|.-.+..+.|.+++|++.+.+.+.+.
T Consensus       549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence              8999999999999999999999999999999998322         24567788888899999999999999999887


Q ss_pred             HhCC
Q 005139          548 NDAP  551 (712)
Q Consensus       548 ~~~~  551 (712)
                      ....
T Consensus       618 ~~~~  621 (777)
T KOG1128|consen  618 KKYK  621 (777)
T ss_pred             hhcc
Confidence            6653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.16  E-value=2e-05  Score=88.05  Aligned_cols=464  Identities=14%  Similarity=0.050  Sum_probs=278.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+.+.+.+|..++..-+|++.|..++.+++.+.++.  +- ......+.+.++.++.+.+... |...+++.++.... 
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-  131 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-  131 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence            5677889999999987788999999999999887541  11 1223556667899999888877 99999999988643 


Q ss_pred             hcccchHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          299 EGQEHALAKFAGHMQL-GDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (712)
                        ..+.. ...++..+ ...+...+++..|+..++.........  .+......+....+.+....+..+++++.++++.
T Consensus       132 --~~~~~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~  206 (608)
T PF10345_consen  132 --YGHSA-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI  206 (608)
T ss_pred             --cCchh-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence              11111 11112222 233333379999999999999886532  1122233444555777778888899999999997


Q ss_pred             HHHHhc--CCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhCCCCh------------------------
Q 005139          378 DIHKDN--GSPASLEEAADRRLMGL--ICETKGDHEAALEHLVLASMTMIANDQDA------------------------  429 (712)
Q Consensus       378 ~~~~~~--~~~~~~~~a~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------  429 (712)
                      ......  .+...+....++..+-.  ++...|+++.+...+.+.-..+......+                        
T Consensus       207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~  286 (608)
T PF10345_consen  207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG  286 (608)
T ss_pred             HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence            766643  11113333344444433  45577888888777665544333221111                        


Q ss_pred             ------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCC---------------HHHHHHHHH
Q 005139          430 ------------EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG---ENH---------------PAVASVFVR  479 (712)
Q Consensus       430 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~---------------~~~~~~~~~  479 (712)
                                  ..+.+|..-|......+..++|.+++.+++...++...   ...               .-...++..
T Consensus       287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y  366 (608)
T PF10345_consen  287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY  366 (608)
T ss_pred             ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence                        11233444566667778888999999999999888761   000               012234556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---C-C
Q 005139          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---Q-S  555 (712)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-~  555 (712)
                      ++.+.+-.+++..|...+..+.....+..........+..++..|..+...|+.+.|..+|.+..-........   . .
T Consensus       367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            67777889999999999999988876532111233457788899999999999999999998655333222111   1 1


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH-H
Q 005139          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GERKSAFFGVALNQMGLACV--QRYSINEAVELFEEARSIL-E  631 (712)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~-~  631 (712)
                      ...-+..++..++...+.-.....-+...++..... ..........++..+-.++.  ..-...++...+.++++.. .
T Consensus       447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~  526 (608)
T PF10345_consen  447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN  526 (608)
T ss_pred             HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence            222334466667666554433222223333322221 11111222223332222222  2223458999999999987 3


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHccc----------hhhhCCCChhHHHHHH------HHHHHHHHhccHHHHHHHHHHH
Q 005139          632 QECGPYHPDTLGVYSNLAGTYDAIGR----------EEKLGTANPDVDDEKR------RLAELLKEAGRVRSRKAQSLET  695 (712)
Q Consensus       632 ~~~~~~~p~~~~~~~~La~~~~~~g~----------~~~l~~~~p~~~~~~~------~la~~~~~~g~~~~A~~~~l~~  695 (712)
                      .. +. .--...++.-++..+. .|+          ........|+....+.      -+...+...|+.++|. ....+
T Consensus       527 ~~-~n-~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~~~~~  602 (608)
T PF10345_consen  527 KL-GN-SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAE-EARQQ  602 (608)
T ss_pred             hh-cc-chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHH
Confidence            32 21 2223334555555554 444          1111122244443333      4566788899999998 66555


Q ss_pred             H
Q 005139          696 L  696 (712)
Q Consensus       696 ~  696 (712)
                      +
T Consensus       603 ~  603 (608)
T PF10345_consen  603 L  603 (608)
T ss_pred             H
Confidence            4

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.15  E-value=8.7e-09  Score=114.63  Aligned_cols=251  Identities=14%  Similarity=0.063  Sum_probs=182.8

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      +..-+|....++..+...+...++ +++|+..++.+++..         |.....|+.+|.++++.+++.+|...  .++
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l   90 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI   90 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence            556678999999999999989987 999999999888764         55677889999999999999988877  666


Q ss_pred             chhhhhhccc-----------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139          293 EIPVIEEGQE-----------HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (712)
Q Consensus       293 ~~~~~~~~~~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (712)
                      .+........           .+. .-.+++.+|.||..+|++++|...|++++++        +|..+.++.++|..|.
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~-~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~a  161 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGE-NKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYE  161 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhh-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHH
Confidence            6543211000           000 1136899999999999999999999999999        7899999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (712)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (712)
                      .. ++++|+.++.+|+..+-........  .  -.....+....-+++.=..+.++.+    ..-.....+..+.-+-..
T Consensus       162 e~-dL~KA~~m~~KAV~~~i~~kq~~~~--~--e~W~k~~~~~~~d~d~f~~i~~ki~----~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        162 EE-DKEKAITYLKKAIYRFIKKKQYVGI--E--EIWSKLVHYNSDDFDFFLRIERKVL----GHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             Hh-hHHHHHHHHHHHHHHHHhhhcchHH--H--HHHHHHHhcCcccchHHHHHHHHHH----hhhccchhHHHHHHHHHH
Confidence            99 9999999999999876443321111  1  1112222223333333333333222    111233455666667788


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      |...++|++++.+++.++++        .+....+...++.+|.  +.|.. ...|++.+++.
T Consensus       233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s  284 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS  284 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence            99999999999999999998        7777888999999988  44544 56667666664

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.13  E-value=4.9e-09  Score=115.98  Aligned_cols=160  Identities=8%  Similarity=-0.004  Sum_probs=129.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005139          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (712)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (712)
                      +....+....+...+-+++.+.+.     .+....++..||.+....|++++|+.+++.++++         .|+...++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------~Pd~~~a~  123 (694)
T PRK15179         58 VLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------FPDSSEAF  123 (694)
T ss_pred             HHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------CCCcHHHH
Confidence            334445555555555566665543     5666889999999999999999999999999998         45568889


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005139          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (712)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (712)
                      .+++.++.+.+++++|+..+++++...++.       +..++.+|.++.+.|++++|+.+|++++..        .+...
T Consensus       124 ~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~  188 (694)
T PRK15179        124 ILMLRGVKRQQGIEAGRAEIELYFSGGSSS-------AREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFE  188 (694)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcH
Confidence            999999999999999999999998876665       467888999999999999999999999862        22345


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .++..+|.++...|+.++|...|++|++.
T Consensus       189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        189 NGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            78899999999999999999999999887

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.09  E-value=8.8e-09  Score=96.78  Aligned_cols=152  Identities=21%  Similarity=0.246  Sum_probs=122.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (712)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (712)
                      -+..|+..|+++......++...       +.            .-+...++.++++..+++++      ...|.....|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~-------~~------------~~~~~~~~~~~~i~~l~~~L------~~~P~~~~~w   76 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD-------PL------------HQFASQQTPEAQLQALQDKI------RANPQNSEQW   76 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC-------cc------------ccccCchhHHHHHHHHHHHH------HHCCCCHHHH
Confidence            34578889998876544322111       00            01112567788888888887      3567778899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHhcCCCCCC
Q 005139          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY-NRTGK--LRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      ..+|.+|...|++++|+..|++++.+        .|....++..+|.++ ...|+  +++|...++++++.         
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---------  139 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---------  139 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---------
Confidence            99999999999999999999999999        888899999999975 67787  59999999999999         


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .|....++..+|..+...|++++|+.++++++++.+.
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556788999999999999999999999999998764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=7.6e-08  Score=88.70  Aligned_cols=209  Identities=14%  Similarity=0.088  Sum_probs=159.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005139          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (712)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (712)
                      .+.++-+++....+.........++...++-.+..+....|+.+-|..++++....        .|...++...-|..+.
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE   97 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE   97 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence            44556666666655544444345566677777788888899999999999887766        4555667777888999


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 005139          486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG  565 (712)
Q Consensus       486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  565 (712)
                      ..|++++|+++|+..++-         +|....++..--.+...+|+.-+|++.+..-++.+...       ..+|..++
T Consensus        98 a~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLa  161 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELA  161 (289)
T ss_pred             HhhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHH
Confidence            999999999999988765         34445556666667788899899999999988887655       47899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYHPDTL  642 (712)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~p~~~  642 (712)
                      .+|...|+|++|.-++++.+-+        .|+....+..+|.+++-+|   ++.-|..+|.+++++        .|...
T Consensus       162 eiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~  225 (289)
T KOG3060|consen  162 EIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNL  225 (289)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhH
Confidence            9999999999999999998864        3444467777887777665   678899999999999        77777


Q ss_pred             HHHHHHHHHHHH
Q 005139          643 GVYSNLAGTYDA  654 (712)
Q Consensus       643 ~~~~~La~~~~~  654 (712)
                      .+++.+-.+-..
T Consensus       226 ral~GI~lc~~~  237 (289)
T KOG3060|consen  226 RALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            777766554443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=3.4e-07  Score=86.09  Aligned_cols=225  Identities=17%  Similarity=0.165  Sum_probs=167.5

Q ss_pred             HHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (712)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (712)
                      .+..+|.+|++++..-.+..     +.    ....+..||.||+...+|..|..+|++.-.+        .|........
T Consensus        21 I~d~ry~DaI~~l~s~~Er~-----p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY   83 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERS-----PR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY   83 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcC-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence            56778999999887655543     21    2335889999999999999999999998777        6888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (712)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (712)
                      .+..++..+.+..|+.......+..        .....++..-+.+.+..+++..+....++.        .....+...
T Consensus        84 ~AQSLY~A~i~ADALrV~~~~~D~~--------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~  147 (459)
T KOG4340|consen   84 QAQSLYKACIYADALRVAFLLLDNP--------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ  147 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence            9999999999999998876654321        111234555566777788888887766543        112456778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-----
Q 005139          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG-----  510 (712)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----  510 (712)
                      .+.|-+.++.|+++.|++-|+.|++.        .......-++++.++++.|+++.|+++..+.++..-+..+.     
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm  219 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM  219 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence            89999999999999999999999987        33334566789999999999999999998888764332110     


Q ss_pred             ----CC-----------ChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          511 ----VP-----------PEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       511 ----~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                          .+           ...+..+++..+.++++.++++.|.+.+.
T Consensus       220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                00           01234566777888999999988876653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.07  E-value=8.2e-09  Score=96.99  Aligned_cols=150  Identities=12%  Similarity=0.114  Sum_probs=121.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (712)
Q Consensus       398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (712)
                      -+..|+..|+++......++..       + +.         .-+...++.++++..+++++..        +|.....|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~-------~-~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w   76 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA-------D-PL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQW   76 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh-------C-cc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHHH
Confidence            3557888999888654432211       0 00         0111367789999999999998        88899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH-HHccc--HHHHHHHHHHHHHHHHhCCCCC
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNE--LEQAIKLLQKALKIYNDAPGQQ  554 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~  554 (712)
                      ..+|.+|...|++++|+..|++++.+         .|....++..+|.++ ...|+  +++|...++++++..++.    
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l---------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~----  143 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQL---------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE----  143 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----
Confidence            99999999999999999999999999         444577899999975 67787  599999999999987765    


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                         ..++..+|..+...|++++|+.+|++++++.
T Consensus       144 ---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        144 ---VTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence               3688999999999999999999999999863

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=7.5e-09  Score=108.66  Aligned_cols=223  Identities=15%  Similarity=0.141  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (712)
                      ..-..++..+...|-...|+..|++.                ..|.....||...|+..+|..+..+-++   +..  + 
T Consensus       399 q~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le---k~~--d-  456 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE---KDP--D-  456 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc---CCC--c-
Confidence            34677899999999999998888873                3455667788899999999988877765   111  1 


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (712)
Q Consensus       389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (712)
                         +..|..+|.+.....-|++|.++....            .+.+...+|......++|.++..+++.++++       
T Consensus       457 ---~~lyc~LGDv~~d~s~yEkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~-------  514 (777)
T KOG1128|consen  457 ---PRLYCLLGDVLHDPSLYEKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEI-------  514 (777)
T ss_pred             ---chhHHHhhhhccChHHHHHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhc-------
Confidence               225666666666655556665555432            2345666777777899999999999999999       


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                       .|.....|+.+|.+..+.++++.|..+|..++.+         .|+...+|++++..|...++-.+|...+++|++...
T Consensus       515 -nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  515 -NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             -CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence             8999999999999999999999999999999998         566789999999999999999999999999998753


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (712)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (712)
                      +.       ..+|.+.-.+....|.+++|+..|.+.+.+-+...
T Consensus       585 ~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  585 QH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             CC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            32       23566666778899999999999999998866544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.1e-07  Score=85.85  Aligned_cols=196  Identities=16%  Similarity=0.081  Sum_probs=155.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005139          322 GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI  401 (712)
Q Consensus       322 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~  401 (712)
                      .+.++-++++...+.....-  .-.++....+..+..+....|+.+-|..++++....++...        .+...-|..
T Consensus        26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--------RV~~lkam~   95 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--------RVGKLKAML   95 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--------hHHHHHHHH
Confidence            34566666666666554432  12345666777788888899999999999998877775443        245567888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005139          402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA  481 (712)
Q Consensus       402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  481 (712)
                      +...|++++|+++|+..+      .++|....++-..-.+...+|+.-+|++.+..-++.        .+....+|..++
T Consensus        96 lEa~~~~~~A~e~y~~lL------~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eLa  161 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLL------EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHELA  161 (289)
T ss_pred             HHHhhchhhHHHHHHHHh------ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHHH
Confidence            999999999999999887      566766677777777788899999999999999988        667788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhC
Q 005139          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~  550 (712)
                      .+|...|+|++|.-++++.+-+         .|.....+..+|.+++-+|   ++.-|.++|.+++++.+..
T Consensus       162 eiY~~~~~f~kA~fClEE~ll~---------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  162 EIYLSEGDFEKAAFCLEELLLI---------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            9999999999999999999988         4556677888888888776   5678999999999997743

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.00  E-value=2.4e-09  Score=84.29  Aligned_cols=77  Identities=34%  Similarity=0.562  Sum_probs=68.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      +|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.++..+|++++|+.++++++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4677899999999999999999999999999999 5555666788899999999999999999999999999999865

...

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.99  E-value=7.5e-05  Score=83.53  Aligned_cols=365  Identities=14%  Similarity=0.027  Sum_probs=242.4

Q ss_pred             hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA-MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (712)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (712)
                      ..|+.+++-+++-.     .-.|...+.+++.+|.++. ...+++.|..++.+++.+.++  ..-......+...++.++
T Consensus        38 ~~ai~CL~~~~~~~-----~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~  110 (608)
T PF10345_consen   38 ATAIKCLEAVLKQF-----KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIY  110 (608)
T ss_pred             HHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHH
Confidence            45677777666422     3344556778999999988 789999999999999988654  111122345566778999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM-GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      .+.+... |...++++++........  . ...++..+ ...+...+++..|++.++.........++......+....+
T Consensus       111 ~~~~~~~-a~~~l~~~I~~~~~~~~~--~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~  186 (608)
T PF10345_consen  111 FKTNPKA-ALKNLDKAIEDSETYGHS--A-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA  186 (608)
T ss_pred             HhcCHHH-HHHHHHHHHHHHhccCch--h-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence            8888777 999999999988774321  1 12222223 33333348999999999999887776677666677777778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHhcCCCCC----
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTN--KGENHPAVASVFVRLAD--MYNRTGKLRESKSYCENALRIYEKPVPGV----  511 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~----  511 (712)
                      .+....+..+++++..+++.......  .+..++....++..+-.  ++...|+++.+...+.+.-..........    
T Consensus       187 ~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~  266 (608)
T PF10345_consen  187 LLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPS  266 (608)
T ss_pred             HHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCC
Confidence            88888898999999999998877654  22223444445555544  34567887787776655544433221000    


Q ss_pred             ---C--------------------------ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC-CC----Cc-
Q 005139          512 ---P--------------------------PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQ----ST-  556 (712)
Q Consensus       512 ---~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~----~~-  556 (712)
                         +                          ....+.+|..-|......+..++|.+++++++....+... .+    .. 
T Consensus       267 ~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl  346 (608)
T PF10345_consen  267 WDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESL  346 (608)
T ss_pred             cCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCH
Confidence               0                          0012233444455666777778999999999998887641 00    01 


Q ss_pred             -------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          557 -------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-KSAFFGVALNQMGLACVQRYSINEAVEL  622 (712)
Q Consensus       557 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~  622 (712)
                                   ...++..++.+.+-.+++..|......+.......... .......+++..|..+...|+.+.|..+
T Consensus       347 ~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~  426 (608)
T PF10345_consen  347 SEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQ  426 (608)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                         12345567778888999999999999998877655432 2233457888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCC---hhhHHHHHHHHHHHHHccc
Q 005139          623 FEEARSILEQECGPYH---PDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       623 ~~~al~~~~~~~~~~~---p~~~~~~~~La~~~~~~g~  657 (712)
                      |.+..-.......+..   .-..-+..|+..++...+.
T Consensus       427 y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~  464 (608)
T PF10345_consen  427 YQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS  464 (608)
T ss_pred             HhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence            9965544333333222   2233456677777775554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.99  E-value=3.5e-08  Score=91.94  Aligned_cols=166  Identities=16%  Similarity=0.182  Sum_probs=138.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ..|....+ .+++..+...|+-+.+..+..++...        ++.....+..+|......|+|.+|+..+.++..+   
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---  129 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---  129 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence            45555555 78889999999999999988887665        6666667777999999999999999999999988   


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                            .|....+|..+|.+|.+.|+++.|...|.+++++.+..+       .+..++|..|.-.|+++.|..++..+..
T Consensus       130 ------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         130 ------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence                  445578899999999999999999999999999987653       5788999999999999999999999876


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      .        +.....+..+|+.+...+|++.+|...-.+
T Consensus       197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             C--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            3        122236788999999999999998876544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.98  E-value=2.3e-08  Score=93.10  Aligned_cols=165  Identities=16%  Similarity=0.067  Sum_probs=139.0

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      .|....+ ..++..+...|+-+.+..+..++....+..        ...+..+|......|+|.+|+..+.++.      
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------~~ll~~~gk~~~~~g~~~~A~~~~rkA~------  127 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------RELLAAQGKNQIRNGNFGEAVSVLRKAA------  127 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------HHHHHHHHHHHHHhcchHHHHHHHHHHh------
Confidence            4666666 889999999999999988888866544332        2244558999999999999999999997      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ...|....++..+|.+|.+.|+++.|...|.+++++        .+....+..++|..|.-.|+++.|..++..+.... 
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-  198 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-  198 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence            456777899999999999999999999999999999        77778899999999999999999999999987762 


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK  542 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (712)
                              +....+..+|+.+...+|++++|.....+
T Consensus       199 --------~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         199 --------AADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             --------CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence                    22356788999999999999999876543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.97  E-value=9.4e-08  Score=107.45  Aligned_cols=397  Identities=16%  Similarity=0.104  Sum_probs=281.5

Q ss_pred             HHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005139          239 QKALELALRAAK-SFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (712)
Q Consensus       239 ~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~  317 (712)
                      +.|.+++..++. +...+++-...|+   +.+.++......+++..|...-++++++.+...+.++|. .+..+..++..
T Consensus       641 ~dav~~~~~al~k~~~~~~~~~fnp~---~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv~  716 (1236)
T KOG1839|consen  641 DDAVKYATKALVKLVAVCGPYGFNPA---GFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSVF  716 (1236)
T ss_pred             HHHHHHHHHHHHHHHhhhcccccCcc---ccccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhcccccee
Confidence            456666555543 3333322222222   333347777788999999999999999988888888876 45567777767


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (712)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (712)
                      ++....+.+|+.+-.+++.+.-...+..+|..+..+.+.+..-...+  +-+.+.+..+++-..+..+..+...+.. ..
T Consensus       717 p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~  793 (1236)
T KOG1839|consen  717 PYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HA  793 (1236)
T ss_pred             eecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HH
Confidence            77777889999999999988877766666666544433333322223  5556666666655555444444333322 11


Q ss_pred             HHHHHHH---cC----------------------------------------------------CHHHHH--HHHHHH--
Q 005139          398 MGLICET---KG----------------------------------------------------DHEAAL--EHLVLA--  418 (712)
Q Consensus       398 la~~~~~---~g----------------------------------------------------~~~~A~--~~~~~a--  418 (712)
                      +..++..   ..                                                    .+..+.  .....+  
T Consensus       794 ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~  873 (1236)
T KOG1839|consen  794 LNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILL  873 (1236)
T ss_pred             HHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhh
Confidence            1111110   00                                                    000000  000000  


Q ss_pred             ------------------HHHH-H----hC-C-------------------CCh--hHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          419 ------------------SMTM-I----AN-D-------------------QDA--EVASVDCSIGDTYLSLSRYDEAGF  453 (712)
Q Consensus       419 ------------------l~~~-~----~~-~-------------------~~~--~~~~~~~~la~~~~~~g~~~~A~~  453 (712)
                                        +... +    .. .                   ..|  ..+.-....|......|.+.+|.+
T Consensus       874 ~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~  953 (1236)
T KOG1839|consen  874 KNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE  953 (1236)
T ss_pred             hcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh
Confidence                              0000 0    00 0                   000  112223445666667788888888


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005139          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                       .-+++.++....+.-++..+..+..|+.++...|++++|+.+..++.-+.++.. +.+++.....+.+++...+..++.
T Consensus       954 -~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~-g~ds~~t~~~y~nlal~~f~~~~~ 1031 (1236)
T KOG1839|consen  954 -LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL-GKDSPNTKLAYGNLALYEFAVKNL 1031 (1236)
T ss_pred             -hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-cCCCHHHHHHhhHHHHHHHhccCc
Confidence             888888888777778999999999999999999999999999999998888765 788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 005139          534 EQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ  612 (712)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~  612 (712)
                      ..|+..+.++..+..-..+. .+..+.+..+++.++...++++.|+.+++.|+.....+..+.....+..+..+++++..
T Consensus      1032 ~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s 1111 (1236)
T KOG1839|consen 1032 SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFES 1111 (1236)
T ss_pred             cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhh
Confidence            99999999999988766666 55677777899999999999999999999999988888777677778899999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005139          613 RYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (712)
Q Consensus       613 ~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  644 (712)
                      .+++..|....+....++...+|++|..+...
T Consensus      1112 ~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1112 MKDFRNALEHEKVTYGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred             hHHHHHHHHHHhhHHHHHHHhhCCCcccchhh
Confidence            99999999999999999999999998876654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.96  E-value=5.4e-09  Score=82.32  Aligned_cols=77  Identities=32%  Similarity=0.554  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      ||..+.++.++|.+|..+|++++|+.+|++++++.+..  +..++..+.++.++|.++..+|++++|++++++++++.+
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            57889999999999999999999999999999995553  556677899999999999999999999999999999875

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.95  E-value=2.4e-08  Score=86.90  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      +......+.+|..++..|++++|...|+-...+        +|.....|++||.++..+|+|.+|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            566677889999999999999999999999998        8999999999999999999999999999999998     


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                          .++.+..+.++|.+++..|+.+.|.+.|+.++..+..
T Consensus        99 ----~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363         99 ----KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence                3445778999999999999999999999999999843

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.93  E-value=5.9e-06  Score=86.78  Aligned_cols=211  Identities=14%  Similarity=0.128  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (712)
                      .|-.++.-|...|+|+.|.++|.++-.                .......|...|+|.+|...-.+..       .+...
T Consensus       767 yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my~k~~kw~da~kla~e~~-------~~e~t  823 (1636)
T KOG3616|consen  767 YYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMYGKAGKWEDAFKLAEECH-------GPEAT  823 (1636)
T ss_pred             cchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHHhccccHHHHHHHHHHhc-------CchhH
Confidence            344567777777888888777765421                2223345666777777766655442       23344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCC---------CH-HHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGEN---------HP-AVASVFVRLADMYNRTGKLRESKS  495 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~---------~~-~~~~~~~~la~~~~~~g~~~~A~~  495 (712)
                      ...|...+.-+-..|+|.+|.++|      .+++.++.+.+-.+         ++ ........+|.-|...|+...|..
T Consensus       824 ~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~  903 (1636)
T KOG3616|consen  824 ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEE  903 (1636)
T ss_pred             HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHH
Confidence            455556666666666666666555      34444444432211         22 234566677888888888888887


Q ss_pred             HHHHHHH-------------------HHhcCCCCCCChhHHHHHH------HHHHHHHHcccHHHHHHH------HHHHH
Q 005139          496 YCENALR-------------------IYEKPVPGVPPEEIASGLT------DVSSIYESMNELEQAIKL------LQKAL  544 (712)
Q Consensus       496 ~~~~al~-------------------~~~~~~~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~------~~~al  544 (712)
                      .|.++-.                   +.+...+.+.....+..|.      .-..++-+.|-.+.|+..      |+-|.
T Consensus       904 ~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~af  983 (1636)
T KOG3616|consen  904 HFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAF  983 (1636)
T ss_pred             HHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHH
Confidence            7655432                   2222110000111111110      001223334444444432      22222


Q ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+..-  +....+..+...++..+...|++++|-+.|-+++.+
T Consensus       984 dlari--~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  984 DLARI--AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             HHHHH--hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence            22221  122233346677888889999999999999888765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.92  E-value=1.7e-08  Score=89.41  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=95.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ..+|........+|..+...|++++|...+++++..        .|....++..+|.++...|++++|+.++++++.+  
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--   80 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--   80 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            456666788899999999999999999999999987        7778899999999999999999999999999887  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                             .+.....++.+|.++...|++++|+.++++++++.+..
T Consensus        81 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        81 -------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence                   33456778999999999999999999999999986543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=1.8e-08  Score=95.60  Aligned_cols=119  Identities=21%  Similarity=0.311  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      .+..+..-|.-+...++|++|+..|.+||++.+..       +..|.+.+.+|.++|.++.|++-++.|+.+        
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------  144 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI--------  144 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence            45667778888999999999999999999998766       357889999999999999999999999997        


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .+.+..+|..||.+|..+|++++|++.|++|+++        +|++.....+|..+-..++.
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcC
Confidence            4667899999999999999999999999999999        99999888888888777766

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=3.2e-06  Score=77.56  Aligned_cols=220  Identities=14%  Similarity=0.050  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +..|..-+..|....+|++|...+.+|....+.+......+..+-..+.+...+..+.++..+|++|..++.+.+   .|
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---sp  107 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SP  107 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---Cc
Confidence            445666677788889999999999999988888877888888999999999999999999999999999999987   45


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      +.+..-...+.-....-+.++|+.+|++++.+.+.   ++........+...++++.+...+++|-..+.+-..+.... 
T Consensus       108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~-  183 (308)
T KOG1585|consen  108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC-  183 (308)
T ss_pred             chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence            55555555555566778999999999999999887   34444556778888999999999999999888877666554 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      .........+.....+|+...+|..|..+++...++    +.-..+....++.+|-..|- .|+.++....+
T Consensus       184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            333334445556666777788999999999887654    22222333456666655553 46766655443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.88  E-value=2.7e-08  Score=86.58  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      ++....++.+|..++..|++++|..+|+-+..+.     +..    ...|++||.++..+|+|.+|+..|.+++.+    
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~----~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWS----FDYWFRLGECCQAQKHWGEAIYAYGRAAQI----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----ccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            5567788889999999999999999999988875     433    345999999999999999999999999999    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (712)
                          +|+.+..+.++|.|++..|+.+.|.+.|+.++..+.
T Consensus        99 ----~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         99 ----KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence                678889999999999999999999999999999884

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.88  E-value=3e-08  Score=91.29  Aligned_cols=122  Identities=17%  Similarity=0.067  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ....+.++..+|.++...|++++|+..|++++.+...      +...+.++.++|.++...|++++|+.++++++.+.+.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3456788999999999999999999999999998432      3445678999999999999999999999999988554


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                      .......++.++..+|..+...|++++|+..+.+++..+++.....|.
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            422222344455555555559999999999999999988877555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=3.2e-08  Score=93.95  Aligned_cols=121  Identities=21%  Similarity=0.239  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                      ..+..+..-|.-+...++|.+|+..|.+||      ...|..+..|++.|.+|.++|.++.|++-++.|+.+        
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------  144 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAI------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence            345566778889999999999999999999      467788899999999999999999999999999999        


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                      +|....+|..||.+|..+|++.+|++.|+++|++         .|.......+|..+-..+++.
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel---------dP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL---------DPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc---------CCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999         333344455555554444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.88  E-value=8.4e-07  Score=84.14  Aligned_cols=183  Identities=18%  Similarity=0.239  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..++..|..++..|+|.+|+..|++++...     |..+. ...+.+.+|.+++..|+++.|+..+++.+.....    
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence            5678889999999999999999999998876     44443 3456899999999999999999999999988633    


Q ss_pred             CChhHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQAL-----------QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~  413 (712)
                       ++....+++.+|.+++...           ...+|+..|+..+..+|+..-                      ..+|..
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y----------------------~~~A~~  131 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY----------------------AEEAKK  131 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT----------------------HHHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH----------------------HHHHHH
Confidence             6788899999999877653           234677777777777765532                      122222


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005139          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (712)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (712)
                      .+..+.         ..++.--..+|..|+..|.|..|+..++.+++.+.     +.+....++..++..|..+|..+.|
T Consensus       132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence            222211         12234445678999999999999999999888743     3566778899999999999988754


Q ss_pred             H
Q 005139          494 K  494 (712)
Q Consensus       494 ~  494 (712)
                      .
T Consensus       198 ~  198 (203)
T PF13525_consen  198 D  198 (203)
T ss_dssp             H
T ss_pred             H
Confidence            3

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=1.6e-05  Score=83.69  Aligned_cols=227  Identities=17%  Similarity=0.203  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHh------hchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQS------IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      .|-.-|.+|.+..++++|+++|++.      +++.+-.    .|...+..--..|.-+...|+++.|+.+|-.+-.+.+.
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            3444566677777788888877653      3333211    12212223445677778888899888888776544322


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                                      ........+|.+|+..++.........+         .|-.++.-|...|+|+.|.+.|.++- 
T Consensus       739 ----------------ieaai~akew~kai~ildniqdqk~~s~---------yy~~iadhyan~~dfe~ae~lf~e~~-  792 (1636)
T KOG3616|consen  739 ----------------IEAAIGAKEWKKAISILDNIQDQKTASG---------YYGEIADHYANKGDFEIAEELFTEAD-  792 (1636)
T ss_pred             ----------------HHHHhhhhhhhhhHhHHHHhhhhccccc---------cchHHHHHhccchhHHHHHHHHHhcc-
Confidence                            1223344567777766654433322221         46677888999999999999998762 


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH---
Q 005139          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC---  497 (712)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---  497 (712)
                                   ....-..+|.+.|+|..|.++..+...         .......|...+.-+-..|+|.+|..+|   
T Consensus       793 -------------~~~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti  850 (1636)
T KOG3616|consen  793 -------------LFKDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITI  850 (1636)
T ss_pred             -------------hhHHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence                         112223567788999998877666532         4455677777888888889998888776   


Q ss_pred             ---HHHHHHHhcCCCCC---------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          498 ---ENALRIYEKPVPGV---------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       498 ---~~al~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                         .+++.++.+....+         .......+...+|.-|...|+...|...|-+|-.
T Consensus       851 ~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  851 GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence               45555555432110         0112344566677777777887777777766543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.87  E-value=1e-06  Score=83.60  Aligned_cols=109  Identities=19%  Similarity=0.254  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ....++..|..++..|+|.+|+..|++.+..+.     ..+....+.+.+|.+++..|++++|+..+++.+..+..    
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----   74 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----   74 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence            356678899999999999999999999988733     36778889999999999999999999999999999665    


Q ss_pred             CCChhHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhC
Q 005139          511 VPPEEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~  550 (712)
                        ++....+++.+|.++..+.           ...+|+..|+..+..+|+.
T Consensus        75 --~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   75 --SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             --CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence              5667888888988876543           3457788888877777654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.86  E-value=3.7e-08  Score=87.18  Aligned_cols=111  Identities=14%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (712)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (712)
                      ..|++++..        +|........+|..+...|++++|+..+++++.+         .+....++..+|.++...|+
T Consensus         4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~la~~~~~~~~   66 (135)
T TIGR02552         4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---------DPYNSRYWLGLAACCQMLKE   66 (135)
T ss_pred             hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHHHH
Confidence            356677776        7888889999999999999999999999999887         34457789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      +++|+.++++++.+.+..       ...++.+|.+|...|++++|+..|++++++
T Consensus        67 ~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDD-------PRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999998875443       357889999999999999999999999986

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.83  E-value=1.4e-07  Score=86.87  Aligned_cols=127  Identities=13%  Similarity=0.079  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  594 (712)
                      ..+..+..+|.++...|++++|+..|++++.+.+.    +.....++.++|.++...|++++|+.+|++++.+.......
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            45788999999999999999999999999988532    22345688999999999999999999999999863221111


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005139          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (712)
Q Consensus       595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~  646 (712)
                       ....+.++..+|..+...|++++|+..+.+++..+++.++..++....+..
T Consensus       109 -~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~  159 (168)
T CHL00033        109 -LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN  159 (168)
T ss_pred             -HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence             122334445555555599999999999999999999998876655544433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.83  E-value=2.1e-05  Score=85.62  Aligned_cols=341  Identities=12%  Similarity=0.032  Sum_probs=212.8

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005139          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (712)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (712)
                      ++....++..-+..+...|. +.+|+...-.|-+         + ...+..+...+.-.+..++..--..+.+.    .+
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d---------~-~~aa~lle~~~~~L~~~~~lsll~~~~~~----lP  407 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD---------P-EMAADLLEQLEWQLFNGSELSLLLAWLKA----LP  407 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC---------H-HHHHHHHHhhhhhhhcccchHHHHHHHHh----CC
Confidence            34556666666666666664 8888877554421         1 11233334445555555554433322222    11


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (712)
Q Consensus       297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (712)
                      ...-..+|.    .....++......++.+|..+..++....+... +......+......|.+....|+++.|+++.+.
T Consensus       408 ~~~l~~~P~----Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~  483 (894)
T COG2909         408 AELLASTPR----LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL  483 (894)
T ss_pred             HHHHhhCch----HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            111112221    245567778889999999999998876643310 000122344455567888899999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (712)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (712)
                      ++...+....   ...+.++..+|.+....|++++|+.+..++.+.....+.......+.+..+.++..+|+...|  .-
T Consensus       484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~~  558 (894)
T COG2909         484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--EQ  558 (894)
T ss_pred             HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--HH
Confidence            9988876643   334557888999999999999999999999998888888888888888999999999933322  22


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH
Q 005139          456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ  535 (712)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  535 (712)
                      .++............+.........+.++...-+++.+..-....+++.....  .........++.|+.+++..|++++
T Consensus       559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~  636 (894)
T COG2909         559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDK  636 (894)
T ss_pred             HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHH
Confidence            22222222221112232222233333333333337777777777776654421  1122223334589999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (712)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (712)
                      |...+.+...+...........+.++.........+|+..+|.....+
T Consensus       637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            999999999887765322224444444455556678999888877766

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=3.8e-06  Score=77.13  Aligned_cols=216  Identities=14%  Similarity=0.127  Sum_probs=161.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      ...+..|..-+..|....+|++|...+.+|.+..+....  ....+.++-..+.+...+..+.++..+|++|..++.+..
T Consensus        28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG  105 (308)
T ss_pred             hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            334455666677888899999999999999987665431  344577888889999999999999999999999998863


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                          .|+.+..-...+--....-++++|+.+|++++.+.... +........+...+.++.+...|.+|-..+.+-..+.
T Consensus       106 ----spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  106 ----SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             ----CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence                33333333344444556678999999999999998875 4445556677889999999999999999998877776


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .....-...  ...+..+-.+|+-..+|..|..+|+...++    .+...++...++.+|-..|.....
T Consensus       181 ~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd~gD~  243 (308)
T KOG1585|consen  181 DKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYDEGDI  243 (308)
T ss_pred             HHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhccCCH
Confidence            665443322  344555556677777999999999987765    334567778888888888765443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=1.4e-06  Score=87.57  Aligned_cols=410  Identities=15%  Similarity=0.115  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV---  341 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---  341 (712)
                      ...+++.|.+|+....+..|++..............   .. .....+..-..+....+.++|+.++.-.-++....   
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~---~~-aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~  175 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES---SS-AASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK  175 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            556788899999999999999887776654322111   11 12234445566666777788887765444332221   


Q ss_pred             -hCCC----------ChhH-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005139          342 -LGET----------DPRV-----------GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG  399 (712)
Q Consensus       342 -~~~~----------~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la  399 (712)
                       .|..          .|..           ..+..+-...|....+...+..-...++.+....        +.++...+
T Consensus       176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs  247 (696)
T KOG2471|consen  176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS  247 (696)
T ss_pred             ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence             0100          1110           1122222333444445555544444444443321        23567778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCC--CChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCC------
Q 005139          400 LICETKGDHEAALEHLVLASMTMIAND--QDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGE------  468 (712)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~------  468 (712)
                      ..++..|+|.+|.+.+...- +....+  ..+.  ....++++|.+++.+|.|.-+..+|.+|+. .+.++...      
T Consensus       248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            89999999999998875431 111111  1122  344568999999999999999999999996 44433211      


Q ss_pred             ---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc-------------
Q 005139          469 ---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE-------------  532 (712)
Q Consensus       469 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  532 (712)
                         .......++++.|..|...|+.-.|.++|.++...+..         .+..|..||.+.....+             
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~---------nPrlWLRlAEcCima~~~~l~ee~~~s~s~  397 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR---------NPRLWLRLAECCIMALQKGLLEEGNSSLSR  397 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence               01234678899999999999999999999999999876         25568888887654211             


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHHHhC--------------------------
Q 005139          533 ------------------------------------LEQAIKLLQKALKIYNDA--------------------------  550 (712)
Q Consensus       533 ------------------------------------~~~A~~~~~~al~~~~~~--------------------------  550 (712)
                                                          .+=|.-+++.++-+.++.                          
T Consensus       398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~  477 (696)
T KOG2471|consen  398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN  477 (696)
T ss_pred             ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence                                                233455566555443111                          


Q ss_pred             --------CCC-----C---C--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005139          551 --------PGQ-----Q---S--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (712)
Q Consensus       551 --------~~~-----~---~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (712)
                              .|+     +   +        ....++...+.+-..+|+.-.|+..-.+.++.         +....++..|
T Consensus       478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~~lS~~~kfL  548 (696)
T KOG2471|consen  478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------ADLSKIYKFL  548 (696)
T ss_pred             CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------hhhhhHHHHH
Confidence                    000     0   0        12345667778888899999999888888875         2344566666


Q ss_pred             HHHHH-----HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-cchhhhCCCChhHH--HHHHHHHHH
Q 005139          607 GLACV-----QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-GREEKLGTANPDVD--DEKRRLAEL  678 (712)
Q Consensus       607 g~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~-g~~~~l~~~~p~~~--~~~~~la~~  678 (712)
                      |.+|.     -+.+..+|..++.--+---....++.+......|+.--.+..-. |+........++.+  ..+++||.+
T Consensus       549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a  628 (696)
T KOG2471|consen  549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA  628 (696)
T ss_pred             HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence            66654     34444555444332111000000011111111111111111100 11111112233322  347889999


Q ss_pred             HHHhccHHHHHHHHHHHHHHhccc-CCcC
Q 005139          679 LKEAGRVRSRKAQSLETLLDANSR-VNND  706 (712)
Q Consensus       679 ~~~~g~~~~A~~~~l~~~l~~~p~-i~~~  706 (712)
                      |.-+|++++|+ ..+..+...-+. ++.+
T Consensus       629 ~alq~~~dqAk-~ll~~aatl~hs~v~~~  656 (696)
T KOG2471|consen  629 LALQGHHDQAK-SLLTHAATLLHSLVNVQ  656 (696)
T ss_pred             HHHhcccHHHH-HHHHHHHHhhhccccHH
Confidence            99999999998 888777666555 4443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.80  E-value=0.00035  Score=76.41  Aligned_cols=266  Identities=10%  Similarity=-0.012  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS-PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      .....+.......++.+|..++.++....+.... ......+......|.+....|+++.|+.+.+.++....... ...
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-~~~  495 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-YRS  495 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-chh
Confidence            3445566777889999999999998877665322 12233344555678888999999999999999986544332 233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHhcCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES--KSYCENALRIYEKPV  508 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~~~~~  508 (712)
                      ...++..+|.+..-.|++++|..+.+++.++.+....  ......+....+.++..+|+...|  ...|...-...... 
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q-  572 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ-  572 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-
Confidence            4567888999999999999999999999999887642  344556666778899999943333  22222222211110 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                       ...+.....+...+..++.+   ++.+..-....+.+.............++..|+.+++..|++++|...+.+...++
T Consensus       573 -~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         573 -KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             -cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence             01111223333333334333   77777777777776555422223333344689999999999999999999998887


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (712)
Q Consensus       589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  626 (712)
                      .... .+....+.++.........+|+..+|.....+.
T Consensus       649 ~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         649 LNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             cCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            6554 333444455555556667889999998888773

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.79  E-value=6.6e-08  Score=96.23  Aligned_cols=257  Identities=15%  Similarity=0.090  Sum_probs=160.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK  307 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  307 (712)
                      .+.++-.|. |.+++.-++  +.       .............+.++|..+|+++..+.-+...         . .|.  
T Consensus         8 vrn~fy~G~-Y~~~i~e~~--~~-------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---------~-~~~--   65 (290)
T PF04733_consen    8 VRNQFYLGN-YQQCINEAS--LK-------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---------S-SPE--   65 (290)
T ss_dssp             HHHHHCTT--HHHHCHHHH--CH-------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---------S-SCC--
T ss_pred             HHHHHHhhh-HHHHHHHhh--cc-------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---------C-Chh--
Confidence            345677775 877776554  11       2233445566677899999999988766544321         1 111  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET-DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      +.+...++..+....+-+.++..++..       +... ...........|.++...|++++|++++.+.-         
T Consensus        66 l~av~~la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~---------  129 (290)
T PF04733_consen   66 LQAVRLLAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG---------  129 (290)
T ss_dssp             CHHHHHHHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT---------
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC---------
Confidence            223455565555444554444443332       2121 11233455666788888999999998886541         


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKT  464 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~  464 (712)
                       .   ..+......++...++++.|.+.++...    ...+  +...+....+++.+..|  .+.+|...|++..+.   
T Consensus       130 -~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~----~~~e--D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---  196 (290)
T PF04733_consen  130 -S---LELLALAVQILLKMNRPDLAEKELKNMQ----QIDE--DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---  196 (290)
T ss_dssp             -C---HHHHHHHHHHHHHTT-HHHHHHHHHHHH----CCSC--CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---
T ss_pred             -c---ccHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCC--cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---
Confidence             1   2245567788999999999999887654    2222  33333333444555555  689999999986543   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH-HHHHHHHHHH
Q 005139          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL-EQAIKLLQKA  543 (712)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a  543 (712)
                           .+..+..++.++.++..+|+|++|...+.+++..         .+..+.++.+++.+....|+. +.+.+++.+.
T Consensus       197 -----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  197 -----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             -----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             -----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence                 4455778999999999999999999999998754         334567899999999999998 5566677766


Q ss_pred             HHHHHh
Q 005139          544 LKIYND  549 (712)
Q Consensus       544 l~~~~~  549 (712)
                      ....+.
T Consensus       263 ~~~~p~  268 (290)
T PF04733_consen  263 KQSNPN  268 (290)
T ss_dssp             HHHTTT
T ss_pred             HHhCCC
Confidence            555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.78  E-value=9.8e-07  Score=78.85  Aligned_cols=123  Identities=20%  Similarity=0.220  Sum_probs=96.4

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (712)
                      ..++...+...+++.+.-     .++.+....+...+|.+++..|++++|...|+.++...      .+......+...|
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L   91 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL   91 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence            578888887777776665     22345567888899999999999999999999999863      2244456778889


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (712)
                      |.++...|++++|+..++..        ........++..+|.+|...|++++|+..|++|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999998652        1222334567789999999999999999999874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.76  E-value=3.5e-06  Score=81.89  Aligned_cols=186  Identities=13%  Similarity=0.048  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      .++..|..+...|+|++|+..|++++...     +..+....+.+.+|.+|+..+++++|+..+++.++..|....    
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~----  104 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN----  104 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc----
Confidence            47889999999999999999999998874     234666778899999999999999999999999999877643    


Q ss_pred             HHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 005139          390 EEAADRRLMGLICETKG---------------DH---EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (712)
                       ...+++.+|.++...+               +.   .+|+..|++.+.   ..++...                 ..+|
T Consensus       105 -~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---~yP~S~y-----------------a~~A  163 (243)
T PRK10866        105 -IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---GYPNSQY-----------------TTDA  163 (243)
T ss_pred             -hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---HCcCChh-----------------HHHH
Confidence             3557888887764443               11   234444444432   2222221                 1222


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                      ...+..+           ....+.--..+|..|.+.|.|..|+.-++.+++.+..      .+....++..++..|...|
T Consensus       164 ~~rl~~l-----------~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~------t~~~~eal~~l~~ay~~lg  226 (243)
T PRK10866        164 TKRLVFL-----------KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD------TQATRDALPLMENAYRQLQ  226 (243)
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHcC
Confidence            2222111           1122333447788899999999999999999988655      4556788889999999999


Q ss_pred             cHHHHHHHHHH
Q 005139          532 ELEQAIKLLQK  542 (712)
Q Consensus       532 ~~~~A~~~~~~  542 (712)
                      ..++|..+...
T Consensus       227 ~~~~a~~~~~~  237 (243)
T PRK10866        227 LNAQADKVAKI  237 (243)
T ss_pred             ChHHHHHHHHH
Confidence            99888776543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.74  E-value=4.6e-06  Score=81.04  Aligned_cols=179  Identities=14%  Similarity=0.086  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ....++..|..++..|+|++|+..|++++...     +..+....+...+|.+|++.+++++|+..+++.++....    
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----  101 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----  101 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----
Confidence            34556778899999999999999999998872     235566677899999999999999999999999999554    


Q ss_pred             CCChhHHHHHHHHHHHHHHcc---------------c---HHHHHHHHHHHHHHHHhCCCCC----------CcHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMN---------------E---LEQAIKLLQKALKIYNDAPGQQ----------STVAGIEA  562 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~  562 (712)
                        ++....+++.+|.++...+               +   ..+|+..|++.+..+|+..-..          ..++.--.
T Consensus       102 --~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        102 --HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             --CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence              6778888999998864443               2   3467778888777766541110          11222344


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      .+|..|.+.|.|..|+.-++.+++-+.     ..+....++..++..|..+|..++|......
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            678899999999999999999887543     2344668999999999999999999876543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.73  E-value=1.6e-07  Score=86.72  Aligned_cols=113  Identities=20%  Similarity=0.254  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .+..+.+++.+|.++...|++++|+.+|++++.+...      .+....++..+|.++...|++++|+.++++++.+.+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            5667888999999999999999999999999988433      3334678999999999999999999999999997554


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCCCC
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGN-------YSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      .       ...+..+|.++...|+       ++.|+..++++++.++......
T Consensus       105 ~-------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        105 Q-------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             c-------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            3       3456667777776554       5666666666666655544333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.71  E-value=1e-06  Score=78.68  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (712)
                      ..+..+...+..++ +..+...+++.+.-+      +..+....+.+.+|.+++..|++++|+..|+.++...     ++
T Consensus        13 ~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d   80 (145)
T PF09976_consen   13 ALYEQALQALQAGD-PAKAEAAAEQLAKDY------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PD   80 (145)
T ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHHC------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Confidence            34444555556765 888777677666542      3335667788889999999999999999999998753     22


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (712)
Q Consensus       303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (712)
                      . .....+.+.||.++...|++++|+..++...         ..+....++..+|.+|...|++++|+..|++++
T Consensus        81 ~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   81 P-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            2 2234468899999999999999999996621         235566788899999999999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.70  E-value=1.2e-06  Score=80.82  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                      ...+..+..++.+|.++...|++++|+.+|++++.+.+..    .....++..+|.++...|++++|+.++++++.+.  
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  102 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIYASNGEHDKALEYYHQALELN--  102 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            3455678889999999999999999999999999876542    1234688999999999999999999999999862  


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHHHHhcCCCChh
Q 005139          591 IGERKSAFFGVALNQMGLACVQR-------YSINEAVELFEEARSILEQECGPYHPD  640 (712)
Q Consensus       591 ~~~~~~~~~~~~~~~lg~~~~~~-------g~~~~A~~~~~~al~~~~~~~~~~~p~  640 (712)
                            +.....+..+|.++...       +++++|+..|+++++.+++....++.+
T Consensus       103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                  22245666777777665       457778888888888777776554433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.69  E-value=2.7e-07  Score=95.51  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (712)
                      +...|..++..|+|++|+.+|.+++.+.+..       ..++..+|.+|..+|++++|+..+++++.+.        +..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------AELYADRAQANIKLGNFTEAVADANKAIELD--------PSL   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCC
Confidence            5567888999999999999999999986654       4688999999999999999999999999972        234


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      ..+++.+|.+|..+|++++|+.+|++++.+        +|+...+...++.+...+.
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999        8888888888888866553

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.6e-05  Score=72.68  Aligned_cols=198  Identities=13%  Similarity=0.147  Sum_probs=135.8

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT  441 (712)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  441 (712)
                      -.+.+++|.++|.++-.+++                      ...+|..|-..|.++.......+...+.+..|...+.+
T Consensus        26 g~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c   83 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC   83 (288)
T ss_pred             CCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            34578888888887765542                      33445555556666655555556666667777777776


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (712)
                      |.+ ++..+|+.+++++++++...+.  ....+..+..+|.+|..- .++++|+.+|+++-+.+..   .......-.++
T Consensus        84 ykk-~~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~  157 (288)
T KOG1586|consen   84 YKK-VDPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCL  157 (288)
T ss_pred             hhc-cChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHH
Confidence            654 5999999999999999887752  334456677899999765 8999999999999998865   22223344567


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      ...+..-...++|.+|+..|++.....-+..-.....-.-+..-|.+++...+.-.+...+++-.++
T Consensus       158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            7778888889999999999998876544331112233334556677777767766665555555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=1.7e-06  Score=87.72  Aligned_cols=165  Identities=15%  Similarity=0.071  Sum_probs=132.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      +....+.+..+..++..|++++|+..++..+..        .|++...+...+.++...++..+|.+.+++++..     
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----  369 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----  369 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence            455677888899999999999999999997776        8888899999999999999999999999999998     


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                          .|.......++|..|...|++.+|+..++..+.-.++.       ...|..||..|..+|+..+|...+       
T Consensus       370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A~-------  431 (484)
T COG4783         370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLAR-------  431 (484)
T ss_pred             ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHHH-------
Confidence                34446778899999999999999999998887765554       358889999999999887765443       


Q ss_pred             HHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005139          589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (712)
Q Consensus       589 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~  646 (712)
                                        +..|.-.|++++|+..+..+.+.    .+.+.|+.+.+-.
T Consensus       432 ------------------AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~da  467 (484)
T COG4783         432 ------------------AEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADA  467 (484)
T ss_pred             ------------------HHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHH
Confidence                              34455578999999998888776    3334555544433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.68  E-value=2.8e-07  Score=95.34  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      +...|..++..|+|++|+.+|.+++.+        .|....++..+|.+|..+|++++|+..+++++.+         .|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------~P   67 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---------DP   67 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------Cc
Confidence            455688889999999999999999998        7888899999999999999999999999999999         34


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ....+++.+|.+|..+|++++|+..|++++.+.+..
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            457789999999999999999999999999987654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=1.6e-07  Score=93.55  Aligned_cols=249  Identities=15%  Similarity=0.101  Sum_probs=158.0

Q ss_pred             cccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005139          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG  279 (712)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g  279 (712)
                      .|+|.+++..........+........+.+.++..|+ ++.++.-       ...   .. .|. ..+...++..+...+
T Consensus        14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~-~~~vl~e-------i~~---~~-~~~-l~av~~la~y~~~~~   80 (290)
T PF04733_consen   14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQ-YDSVLSE-------IKK---SS-SPE-LQAVRLLAEYLSSPS   80 (290)
T ss_dssp             TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT--HHHHHHH-------S-T---TS-SCC-CHHHHHHHHHHCTST
T ss_pred             hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCC-hhHHHHH-------hcc---CC-Chh-HHHHHHHHHHHhCcc
Confidence            4677777743333333334456677888899999997 5544322       211   11 122 234455566665545


Q ss_pred             CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (712)
Q Consensus       280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (712)
                      +.+.++.-++..+.-.   .+..++.    .....|.++...|++++|+..+.+.             ...++......+
T Consensus        81 ~~e~~l~~l~~~~~~~---~~~~~~~----~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi  140 (290)
T PF04733_consen   81 DKESALEELKELLADQ---AGESNEI----VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQI  140 (290)
T ss_dssp             THHCHHHHHHHCCCTS------CHHH----HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhc---cccccHH----HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHH
Confidence            6677777666554332   1112221    3566778888899999999888764             112445566778


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (712)
                      +...++++.|.+.++.+.++.    + +..   .+....+++....|  .+.+|...|++..      ...+....+++.
T Consensus       141 ~L~~~R~dlA~k~l~~~~~~~----e-D~~---l~qLa~awv~l~~g~e~~~~A~y~f~El~------~~~~~t~~~lng  206 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQID----E-DSI---LTQLAEAWVNLATGGEKYQDAFYIFEELS------DKFGSTPKLLNG  206 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHCCS----C-CHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHH------CCS--SHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC----C-cHH---HHHHHHHHHHHHhCchhHHHHHHHHHHHH------hccCCCHHHHHH
Confidence            999999999999887764332    1 111   12233344555555  5899999998864      223345677889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 005139          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL-RESKSYCENALRI  503 (712)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  503 (712)
                      +|.++..+|+|++|...+++++..        .+....++.+++.+....|+. +.+.+++.+....
T Consensus       207 ~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  207 LAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            999999999999999999998865        677788999999999999998 5566677766655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=9.6e-07  Score=89.43  Aligned_cols=148  Identities=19%  Similarity=0.130  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      .+++..+..++..|++++|+..+...+      ...|.....+...+.++...++..+|.+.+++++..        .|.
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~  372 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLI------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPN  372 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Confidence            478888999999999999999999866      456677788888999999999999999999999998        788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005139          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (712)
                      ......++|..|...|++.+|+..++..+.-         .|+.+..|..||..|..+|+..+|...             
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~---------~p~dp~~w~~LAqay~~~g~~~~a~~A-------------  430 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFN---------DPEDPNGWDLLAQAYAELGNRAEALLA-------------  430 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---------CCCCchHHHHHHHHHHHhCchHHHHHH-------------
Confidence            8889999999999999999999999988776         455678899999999999998776543             


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                                 .++.|...|++++|+..+..+.+.
T Consensus       431 -----------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         431 -----------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -----------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence                       355677789999999999988775

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.64  E-value=0.00031  Score=69.26  Aligned_cols=302  Identities=15%  Similarity=0.076  Sum_probs=206.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH
Q 005139          227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA  306 (712)
Q Consensus       227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  306 (712)
                      .|.+....|| -..|..+..++-+++.     .+.+  +.++..-+..-...|+|+.|.+-|+-.+..         |..
T Consensus        90 tGliAagAGd-a~lARkmt~~~~~lls-----sDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEt  152 (531)
T COG3898          90 TGLIAAGAGD-ASLARKMTARASKLLS-----SDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PET  152 (531)
T ss_pred             hhhhhhccCc-hHHHHHHHHHHHhhhh-----ccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHH
Confidence            3444445555 6777777777766552     2222  223344467777789999999999987654         233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ....+..|-.--...|..+.|+.+.+.+...        -|....++...-...+..|+|+.|+++.+.......-..+.
T Consensus       153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~  224 (531)
T COG3898         153 RLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV  224 (531)
T ss_pred             HHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence            3334445555556789999999999999887        46777777777788889999999999998876543222211


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (712)
                      .....+..+..-+.. ...-+...|...-.++.      +..++.+-.-..-+..++..|+..++-.+++.+.+.     
T Consensus       225 aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~------KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-----  292 (531)
T COG3898         225 AERSRAVLLTAKAMS-LLDADPASARDDALEAN------KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-----  292 (531)
T ss_pred             HHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHh------hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-----
Confidence            111122222222222 22345667777666665      455666666677789999999999999999988876     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                       +.||...       .+|....--+.++.-++++-.+..-      .++.......++..-+..|++..|..-.+.+...
T Consensus       293 -ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         293 -EPHPDIA-------LLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             -CCChHHH-------HHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence             2366544       3444444445566667777666332      4556788889999999999999999988888877


Q ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 005139          547 YNDAPGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISK  587 (712)
Q Consensus       547 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  587 (712)
                      .+..        .++..|+.+-... |+-.++...+-+++..
T Consensus       359 ~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         359 APRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             Cchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            6554        4777888887766 9999999999999874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.63  E-value=5.8e-07  Score=77.40  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      .+++.+|..+...|++++|+..|.+++...     ++++....+++.+|.++...|++++|+.+|++++.....      
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------   71 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK------   71 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC------
Confidence            467889999999999999999999998761     223444678899999999999999999999999987433      


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ++....++..+|.++...|++++|+.++.+++...+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            33346778999999999999999999999999886543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=7.9e-06  Score=74.56  Aligned_cols=199  Identities=19%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005139          402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA  481 (712)
Q Consensus       402 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  481 (712)
                      +.-.+.+++|.++|.++-                    ..|....+|..|-..|.++-++..+.+.  ..+.+..|...+
T Consensus        24 fgg~~k~eeAadl~~~Aa--------------------n~yklaK~w~~AG~aflkaA~~h~k~~s--khDaat~YveA~   81 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAA--------------------NMYKLAKNWSAAGDAFLKAADLHLKAGS--KHDAATTYVEAA   81 (288)
T ss_pred             cCCCcchHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHH
Confidence            334458888888888774                    3444455566666666666666555442  334455566666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 005139          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (712)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (712)
                      .+|.+ ++..+|+.+++++++++..+.   .....+.-+..+|.+|... .++++|+.+|+++-+.+... ........+
T Consensus        82 ~cykk-~~~~eAv~cL~~aieIyt~~G---rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-es~ssANKC  156 (288)
T KOG1586|consen   82 NCYKK-VDPEEAVNCLEKAIEIYTDMG---RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-ESVSSANKC  156 (288)
T ss_pred             HHhhc-cChHHHHHHHHHHHHHHHhhh---HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch-hhhhhHHHH
Confidence            66554 488899999999999887742   1222355667888888875 89999999999999887653 222334456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +...+..-...++|.+|+..|++.....-.  ..-. ...-..++.-|.|++-..+.-.+...+++..++
T Consensus       157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~--n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLD--NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            777788888889999999999987653211  1100 111223455566777667777666666666555

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.60  E-value=1.1e-06  Score=75.64  Aligned_cols=103  Identities=20%  Similarity=0.264  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005139          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                      .+++.+|..+...|++++|+..|.+++...+..    .....+++.+|.++...|++++|+.+|++++...     +..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~   73 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSP   73 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCC
Confidence            467899999999999999999999998765432    2234578889999999999999999999998753     1222


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          598 FFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ....++..+|.++...|++++|+.+|++++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            23468999999999999999999999999998

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.56  E-value=3.2e-05  Score=87.33  Aligned_cols=210  Identities=16%  Similarity=0.142  Sum_probs=165.8

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      +|+....|...-..+...++.++|.+.+++||....-...........+|.+|-   ..-|.-+.-.+.|++|.+.+   
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE---n~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE---NAYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH---HhhCcHHHHHHHHHHHHHhc---
Confidence            688888888888889999999999999999997652222212222333444443   34466677778888886432   


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                          +...+|..|..+|...+.+++|.++|+..++.+.        ....+|..+|..++++.+-+.|..++.+|+....
T Consensus      1528 ----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1528 ----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred             ----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence                2346788899999999999999999999998743        3467899999999999999999999999999865


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (712)
                      +.       .........|.+.++.|+.+.+..+|+-.+..+|..       ...|..+...-.+.|+.+.+..+|++++
T Consensus      1596 k~-------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1596 KQ-------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             hh-------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            41       246677888999999999999999999998877654       2477777888889999999999999998


Q ss_pred             HH
Q 005139          586 SK  587 (712)
Q Consensus       586 ~~  587 (712)
                      .+
T Consensus      1662 ~l 1663 (1710)
T KOG1070|consen 1662 EL 1663 (1710)
T ss_pred             hc
Confidence            85

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.55  E-value=4.4e-07  Score=72.44  Aligned_cols=83  Identities=24%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (712)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (712)
                      .|+|+.|+.+++++++..+     ..+  ....++.+|.+|+..|+|++|+.++++ ...        ++......+.+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-----~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a   65 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-----TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA   65 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-----GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC-----CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence            6899999999999999863     221  223577899999999999999999999 444        345567777889


Q ss_pred             HHHHHhCCHHHHHHHHHHH
Q 005139          358 EAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~a  376 (712)
                      .+++.+|++++|+++++++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.53  E-value=5.4e-07  Score=71.91  Aligned_cols=84  Identities=25%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (712)
                      .+|+|+.|+.+++++++....     .+ ....+..+|.+|+..|++++|+.++++ ....         +........+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---------~~~~~~~~l~   64 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---------PSNPDIHYLL   64 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---------HCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---------CCCHHHHHHH
Confidence            368999999999999998221     12 566788899999999999999999999 5442         2346667788


Q ss_pred             HHHHHHcccHHHHHHHHHHH
Q 005139          524 SSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~a  543 (712)
                      |.++..+|++++|++.|+++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999875

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=3.6e-06  Score=84.59  Aligned_cols=337  Identities=18%  Similarity=0.161  Sum_probs=190.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHHHcCCHhHHHHHHHHhhc-hh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL--VMCLHVIAAIYCSLGQYNEAIPVLEQSIE-IP  295 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~~al~-~~  295 (712)
                      +.+..++..++.++..|+ |.+|...+...- +.+.. .+...|+.  ...+.+||.++++.|.|..+..+|.+|++ ..
T Consensus       238 ~s~~~l~LKsq~eY~~gn-~~kA~KlL~~sn-i~~~~-g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGN-HPKAMKLLLVSN-IHKEA-GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             CCcHHHHHHHHHHHHhcc-hHHHHHHHHhcc-ccccc-CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            556677888889999986 888887765431 11111 12223333  34456899999999999999999999996 22


Q ss_pred             hhhh-c--ccc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCC--
Q 005139          296 VIEE-G--QEH-----ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ--  365 (712)
Q Consensus       296 ~~~~-~--~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--  365 (712)
                      .... +  +..     ......++++.|..|...|+.-.|.++|.+++..+..        ....|..||.+++...+  
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCima~~~~  386 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCIMALQKG  386 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHhhhh
Confidence            1111 1  000     0113456899999999999999999999999999744        34678888888775321  


Q ss_pred             -HHHHHHHHHH--------------HHHHHHhcCC---------C-CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 005139          366 -FSEAQKFCQM--------------ALDIHKDNGS---------P-ASLEEAADRRLMGLICETK-GDHEAALEHLVLAS  419 (712)
Q Consensus       366 -~~~A~~~~~~--------------al~~~~~~~~---------~-~~~~~a~~~~~la~~~~~~-g~~~~A~~~~~~al  419 (712)
                       .++......+              .+-+ .++..         + .....+.+...-|..+... .++..   .+.-+.
T Consensus       387 l~ee~~~s~s~~~i~~~vig~g~rr~~m~-~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~---~~~~a~  462 (696)
T KOG2471|consen  387 LLEEGNSSLSRSEIRVHVIGKGNRRQLMI-EENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGS---ILSVAM  462 (696)
T ss_pred             hhhhccCCcccccceeeeecccchhheee-cccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchh---hhhhhc
Confidence             1111111111              0000 00000         0 1111111111111111100 11100   000000


Q ss_pred             HHHHh------------------CC--------CC--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          420 MTMIA------------------ND--------QD--------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       420 ~~~~~------------------~~--------~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                      ..-+.                  .+        ..        .....++.+.+.+-..+|+.-.|+....+.++.    
T Consensus       463 ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~----  538 (696)
T KOG2471|consen  463 NSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL----  538 (696)
T ss_pred             cccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh----
Confidence            00000                  00        00        123556778888888999999999999988875    


Q ss_pred             cCCCCHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------HH------Hhc-------C--CCC--------C
Q 005139          466 KGENHPAVASVFVRLADMY-----NRTGKLRESKSYCENAL------RI------YEK-------P--VPG--------V  511 (712)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~~------~~~-------~--~~~--------~  511 (712)
                           +....++..||.+|     +.+.+..+|...+.--+      .+      +..       .  ..+        .
T Consensus       539 -----~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~s  613 (696)
T KOG2471|consen  539 -----ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLS  613 (696)
T ss_pred             -----hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCC
Confidence                 44455666666555     45677777776654311      00      000       0  000        0


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (712)
                      ........+++||.++.-+|++++|..++..|..+.......     .+......+-.+.|+...|...+++.
T Consensus       614 v~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~-----~A~~lavyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  614 VEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNV-----QATVLAVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccH-----HHHHHHHHHHHhcCCCcchHHHHHhc
Confidence            111234567899999999999999999999999887743221     12222223445678888888777664

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.52  E-value=5.4e-05  Score=85.58  Aligned_cols=208  Identities=13%  Similarity=0.081  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005139          263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (712)
Q Consensus       263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (712)
                      ..+..|...-......++.++|.+.+++||....-..    ....+.+|..+-++...-|.-+.-.+.|++|.+.+    
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE----eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---- 1527 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE----EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---- 1527 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----
Confidence            3344454555667788999999999999987641111    11233445555555555667777888888888874    


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                           +...+|..|..+|...+.+++|.++++..++.+.+.        ..+|..+|..++.+.+-+.|...+.+|+..+
T Consensus      1528 -----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1528 -----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred             -----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence                 334678889999999999999999999999888633        3378899999999999999999999998655


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                      ..    ..........|++-++.|+.+.+..+|+..+..        +|.....|.-+...-.+.|+.+.+..+|++++.
T Consensus      1595 Pk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1595 PK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             ch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            43    223456667789999999999999999998887        888888999999999999999999999999988


Q ss_pred             H
Q 005139          503 I  503 (712)
Q Consensus       503 ~  503 (712)
                      +
T Consensus      1663 l 1663 (1710)
T KOG1070|consen 1663 L 1663 (1710)
T ss_pred             c
Confidence            7

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.52  E-value=6.1e-07  Score=73.29  Aligned_cols=97  Identities=30%  Similarity=0.423  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      +++.+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|++++.+...       
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-------   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence            4678899999999999999999999987        5555578999999999999999999999999987432       


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                        ...++..+|.++...|++++|..++.+++...
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence              23678899999999999999999999987653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.6e-06  Score=84.72  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=112.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS------LELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~------~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      ..+...-..|..+++.|+ |..|...|++|+..+......+..      .....++.+++.||.++++|.+|+..+.++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345566778999999997 999999999999998643322111      2235688999999999999999999999999


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHH-HH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA-QK  371 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~  371 (712)
                      .+.     +++.    .++++.|.++..+|+|+.|+..|++++++        .|....+...|..+.....++.+. .+
T Consensus       285 e~~-----~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  285 ELD-----PNNV----KALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             hcC-----CCch----hHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            986     4443    35999999999999999999999999999        577777777777776665555443 56


Q ss_pred             HHHHHHHHHH
Q 005139          372 FCQMALDIHK  381 (712)
Q Consensus       372 ~~~~al~~~~  381 (712)
                      .|..++....
T Consensus       348 ~y~~mF~k~~  357 (397)
T KOG0543|consen  348 MYANMFAKLA  357 (397)
T ss_pred             HHHHHhhccc
Confidence            6666665543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.50  E-value=7.2e-07  Score=68.16  Aligned_cols=64  Identities=27%  Similarity=0.408  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRI  503 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  503 (712)
                      +.++..+|.+++..|++++|+.+|.+++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567899999999999999999999999999        8999999999999999999 799999999999987

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.4e-06  Score=85.00  Aligned_cols=138  Identities=15%  Similarity=0.166  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQD---------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (712)
                      ....-|..|+..|+|..|...|++|+..+......         .....++.|++.++.++++|.+|+....++|.+   
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---  286 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---  286 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence            35567899999999999999999998776532211         123457899999999999999999999999998   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH-HHHHHHHH
Q 005139          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ-AIKLLQKA  543 (712)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  543 (712)
                           .+.+..+++..|.++..+|+|+.|+..|++++++.         |..-.+...|..+..+..++.+ ..+.|..+
T Consensus       287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---------P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE---------PSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 88899999999999999999999999999999993         3334455566666555544443 36667766


Q ss_pred             HHHHH
Q 005139          544 LKIYN  548 (712)
Q Consensus       544 l~~~~  548 (712)
                      +....
T Consensus       353 F~k~~  357 (397)
T KOG0543|consen  353 FAKLA  357 (397)
T ss_pred             hhccc
Confidence            65544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.49  E-value=6.3e-07  Score=68.49  Aligned_cols=64  Identities=23%  Similarity=0.359  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIH  380 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  380 (712)
                      ..|..+|.++...|++++|+.+|.+++++        +|....+++++|.++..+| ++++|+..+++++++.
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            45899999999999999999999999999        7899999999999999999 7999999999999875

...

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.48  E-value=3.5e-05  Score=87.37  Aligned_cols=387  Identities=13%  Similarity=0.092  Sum_probs=253.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (712)
                      +.++..+...+++.+|...-++++++.+..++.+.|+...-+..++..++....+.+|+.+-.+++.+.....+..++..
T Consensus       669 ~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~  748 (1236)
T KOG1839|consen  669 YSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNT  748 (1236)
T ss_pred             ccCceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccc
Confidence            33477778889999999999999999999999999999999999998888888899999999999998877766555544


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHHH---cCCHHHHHHHHHHHHHHHHH--h
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD-CSIGDTYLS---LSRYDEAGFAYQKALTAFKT--N  465 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~la~~~~~---~g~~~~A~~~~~~al~~~~~--~  465 (712)
                      +..+.+....-...|  +-++.++..+++.+...-.......+. ..+..++.-   ......+..-.-++..+..+  .
T Consensus       749 ~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~  826 (1236)
T KOG1839|consen  749 AATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAA  826 (1236)
T ss_pred             cchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhc
Confidence            443333333322223  556666666655443321111111111 122221111   12222221111111110000  0


Q ss_pred             cCCCCH---------------------------HHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHhcCC--CC---
Q 005139          466 KGENHP---------------------------AVASVFVRLADMYNRTGKLRESKS---YCENALRIYEKPV--PG---  510 (712)
Q Consensus       466 ~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~~--~~---  510 (712)
                      .+...+                           ........+..+....|...-+..   .+..-+....+..  ..   
T Consensus       827 ~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~  906 (1236)
T KOG1839|consen  827 AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEP  906 (1236)
T ss_pred             cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCC
Confidence            000000                           001111111222222222111111   1111111100000  00   


Q ss_pred             -----------------CCCh--hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHH
Q 005139          511 -----------------VPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYM  570 (712)
Q Consensus       511 -----------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~  570 (712)
                                       ...|  ..+.-....+......|.+.+|.+ .-+++.+..+..+.. +.++..|..++.++.+
T Consensus       907 ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~  985 (1236)
T KOG1839|consen  907 KSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNR  985 (1236)
T ss_pred             CCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh
Confidence                             0011  122334455666677888888988 888888887665654 5788899999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 005139          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (712)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~  650 (712)
                      .|++++|+.+-.+|.-+.+.....+++.....+.+++......++...|+..+.+++.+..=.+|+.||..+....++..
T Consensus       986 ~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen  986 LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred             hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence            99999999999999999998888888888899999999999999999999999999999888899999999999999999


Q ss_pred             HHHHccc---------------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          651 TYDAIGR---------------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       651 ~~~~~g~---------------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ++...++               ...+++..-.+..++..+++++...|+++.|. ...+......+.
T Consensus      1066 l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al-~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1066 LLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL-EHEKVTYGIYKE 1131 (1236)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH-HHHhhHHHHHHH
Confidence            8777666               45556677778888999999999999999998 777777766655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.44  E-value=5.2e-06  Score=70.12  Aligned_cols=102  Identities=23%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      .+.+.+|.++-..|+.++|+.+|++++..     +...+....+++.+|..+..+|++++|+..+++++..+..      
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD------   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------
Confidence            45788999999999999999999999885     3345667789999999999999999999999999876422      


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                      .+........++.++...|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222455567788999999999999999877664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=6.1e-05  Score=68.10  Aligned_cols=205  Identities=17%  Similarity=0.075  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      .+.+..++..|..|-..|-+.-|.--|.+++.+.     |+.|.    +++.||..+...|+|+.|.+.|...+++    
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-----P~m~~----vfNyLG~Yl~~a~~fdaa~eaFds~~EL----  128 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR-----PDMPE----VFNYLGIYLTQAGNFDAAYEAFDSVLEL----  128 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-----CCcHH----HHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence            4567788889999999999999999999999997     55544    4899999999999999999999999999    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~  421 (712)
                          +|..-.+..+.|..++.-|++.-|.+-+.+-....+     .++..+ .|..   +-...-+..+|...+.+-.  
T Consensus       129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~-----~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR~--  193 (297)
T COG4785         129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP-----NDPFRS-LWLY---LNEQKLDPKQAKTNLKQRA--  193 (297)
T ss_pred             ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC-----CChHHH-HHHH---HHHhhCCHHHHHHHHHHHH--
Confidence                788888999999999999999999988766554332     223211 1111   1223446667766553321  


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                       .  +.+.. -+.++.   +-+..|+..+ ...++++....+.. ..-......+++.||..+...|+.++|..+|+-++
T Consensus       194 -~--~~d~e-~WG~~i---V~~yLgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai  264 (297)
T COG4785         194 -E--KSDKE-QWGWNI---VEFYLGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV  264 (297)
T ss_pred             -H--hccHh-hhhHHH---HHHHHhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence             1  11111 111111   1112233211 12233333221110 00023346788999999999999999999999887


Q ss_pred             HH
Q 005139          502 RI  503 (712)
Q Consensus       502 ~~  503 (712)
                      ..
T Consensus       265 an  266 (297)
T COG4785         265 AN  266 (297)
T ss_pred             HH
Confidence            65

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00013  Score=68.47  Aligned_cols=236  Identities=14%  Similarity=0.074  Sum_probs=146.6

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005139          359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (712)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (712)
                      -++..|.|..++...++.-...         ........+.+.|..+|.+...+.-...+       . .+.. .+...+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~---------~~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~l-qAvr~~   78 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK---------TDVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATPL-QAVRLL   78 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc---------chhHHHHHHHHHHHHcccccccccccccc-------c-CChH-HHHHHH
Confidence            3455677776665544432211         11224556777788888876554433221       1 1222 223334


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      +.....-++.++-+.-..+-+..      ............-|.+|...|++++|+........+              .
T Consensus        79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E  138 (299)
T KOG3081|consen   79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E  138 (299)
T ss_pred             HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence            44444444444433333332221      112223344555678899999999999888773333              2


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~  594 (712)
                      +...-..++.++.+.+-|.+.++++.++..+.         ++..||..+...    +.+..|.-+|++.-       +.
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k  202 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EK  202 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cc
Confidence            33334567888889999999999988876554         555666666543    34555655555543       32


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       595 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .++ ....++.++.++..+|+|++|...++.++.-        ++....++.|+..+-...|.
T Consensus       203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCC
Confidence            222 2467889999999999999999999999987        77788888899888888876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.40  E-value=2.2e-06  Score=69.93  Aligned_cols=96  Identities=29%  Similarity=0.361  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      ++..+|.++...|++++|+..+.+++..      .+....++..+|.++...+++++|+.++++++..        .+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~   67 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DPDN   67 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCcc
Confidence            4778999999999999999999998743      3333477889999999999999999999999987        4555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ..++..+|.++...|++++|..++.+++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          68 AKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            578999999999999999999999998765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.40  E-value=6.2e-06  Score=69.67  Aligned_cols=102  Identities=25%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005139          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (712)
Q Consensus       266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (712)
                      .+++.+|.++-..|+.++|+.+|++++...     ...+ ....++..+|.++..+|++++|+..+++++..+     ++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG-----LSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            357789999999999999999999999853     2222 234578999999999999999999999998762     22


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                      ++....+...++.++...|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            233666777789999999999999999877764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.37  E-value=0.00078  Score=72.38  Aligned_cols=187  Identities=13%  Similarity=0.035  Sum_probs=130.4

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVA---SVFVRLADMYN----RTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                      -.|+-+.++..+.++.+. ..+   ..|...   ..|+.....+.    .....+.|.+++......+         |.-
T Consensus       200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---------P~s  266 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---------PNS  266 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---------CCc
Confidence            468999999999887652 111   111111   11111111111    2345677888888777774         334


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                      +..+...|+++...|+.++|++.|++++...... .  .....+++.+++++..+.+|++|..+|.+..+.       ..
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-~--Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~  336 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-K--QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK  336 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-H--hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence            6778899999999999999999999988543332 1  122346889999999999999999999998773       23


Q ss_pred             hHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005139          597 AFFGVALNQMGLACVQRYSI-------NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (712)
Q Consensus       597 ~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  653 (712)
                      ...+...+..|.++...|+.       ++|.++|.++-.+..+..|..-|-..-+.........
T Consensus       337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~  400 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK  400 (468)
T ss_pred             cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence            44566777888999999999       9999999999999888777666755555544444333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.34  E-value=8.8e-06  Score=79.60  Aligned_cols=107  Identities=19%  Similarity=0.271  Sum_probs=89.9

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          433 SVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       433 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      ...+..|..+ +..|+|++|+..|+..+..+.     +.+....+++.+|.+|+..|++++|+..|.+++..+..     
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-----~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-----  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-----DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-----  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence            4455556654 567999999999999998822     23444689999999999999999999999999998654     


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                       ++....+++.+|.++..+|++++|...|+++++.+++.
T Consensus       213 -s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        213 -SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             -CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence             56678899999999999999999999999999887754

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.32  E-value=0.0011  Score=64.35  Aligned_cols=231  Identities=28%  Similarity=0.330  Sum_probs=175.3

Q ss_pred             cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (712)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (712)
                      .+.+..+...+...+.....     .  .........+..+...+.+..+...+...+..      ...+.....+..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  102 (291)
T COG0457          36 LGELAEALELLEEALELLPN-----S--DLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLG  102 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCcc-----c--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHH
Confidence            45666677777766655311     0  01234788889999999999999999998864      01467778889999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005139          358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL-ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (712)
Q Consensus       358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (712)
                      ..+...+++..++..+..++........        .....+. ++...|+++.|...+.+++. .  ..........+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~~  171 (291)
T COG0457         103 LLLEALGKYEEALELLEKALALDPDPDL--------AEALLALGALYELGDYEEALELYEKALE-L--DPELNELAEALL  171 (291)
T ss_pred             HHHHHHhhHHHHHHHHHHHHcCCCCcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCCccchHHHHH
Confidence            9999999999999999998876544311        2334444 89999999999999999853 1  110124556666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005139          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (712)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (712)
                      ..+..+...++++.|+..+.+++..        .+. ....+..++..+...+++..|...+..++.....         
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------  234 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---------  234 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---------
Confidence            6677788899999999999999998        555 5788999999999999999999999999998432         


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ....+..++..+...+.++++...+.+++...+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         235 NAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            3456677777777777899999999999887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.30  E-value=6.1e-06  Score=80.69  Aligned_cols=97  Identities=8%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             HHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (712)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (712)
                      +..|+|++|+..|+..+...     |+.+. ...+++.+|.+|+..|++++|+..|++++..+     ++++....+++.
T Consensus       154 ~~~~~y~~Ai~af~~fl~~y-----P~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~k  222 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKY-----PDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFK  222 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHC-----cCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHH
Confidence            45699999999999999887     44432 23468999999999999999999999999885     346788999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          356 LAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      +|.++...|++++|...|+++++.++..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            9999999999999999999999888654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.30  E-value=0.00047  Score=64.55  Aligned_cols=279  Identities=16%  Similarity=0.133  Sum_probs=182.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139          405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (712)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (712)
                      ..+.++|+.-|++.+.+-.  .....-..++-.+..+++.+++|++-...|.+.+...+.....+...  .+.+.+-..-
T Consensus        40 e~~p~~Al~sF~kVlelEg--EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyi  115 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEG--EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYI  115 (440)
T ss_pred             ccCHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH
Confidence            3478999999999886432  22233446777888999999999999999999999877665444332  1222222222


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-----CcHHH
Q 005139          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----STVAG  559 (712)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~  559 (712)
                      ....+.+--..+|+..+...+..   .+......+-..||.+|+..++|.+-.+.+.+.-..+....|..     ..+..
T Consensus       116 StS~~m~LLQ~FYeTTL~ALkdA---KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE  192 (440)
T KOG1464|consen  116 STSKNMDLLQEFYETTLDALKDA---KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE  192 (440)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhh---hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence            23444455556666666655442   11222334556899999999999998888888777776554443     25566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 005139          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (712)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  639 (712)
                      +|..-..+|..+.+-.+-..+|++++.+-..+  ++|...+.+...=|..+.+.|++++|-.-|-+|..-+.+..   .|
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI--PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG---sp  267 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAI--PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG---SP  267 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHHHHhhccC--CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC---Cc
Confidence            77777788999999888889999999875543  34444455555556788899999999988888877665543   34


Q ss_pred             hhHH--HHHHHHHHHHHccc------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          640 DTLG--VYSNLAGTYDAIGR------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       640 ~~~~--~~~~La~~~~~~g~------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ....  -|.-||..+...|-      +.+--..+|+.. +..+|..+|....     + ..|+++++.+..
T Consensus       268 RRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIl-AMTnlv~aYQ~Nd-----I-~eFE~Il~~~~~  331 (440)
T KOG1464|consen  268 RRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEIL-AMTNLVAAYQNND-----I-IEFERILKSNRS  331 (440)
T ss_pred             chhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHH-HHHHHHHHHhccc-----H-HHHHHHHHhhhc
Confidence            4333  35566777777665      222224555544 4556666664321     2 556677766655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.30  E-value=0.0014  Score=63.44  Aligned_cols=226  Identities=24%  Similarity=0.318  Sum_probs=168.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005139          321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL  400 (712)
Q Consensus       321 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~  400 (712)
                      .+.+..+...+..++.....      ..........+..+...+.+..+...+...+..      .........+..++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  103 (291)
T COG0457          36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL  103 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence            35555666666665554210      023567788889999999999999999988864      011223457888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHH
Q 005139          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD-TYLSLSRYDEAGFAYQKALTAFKTNKGENHP---AVASV  476 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~  476 (712)
                      .+...+++..++..+..++....      .........+. ++...|+++.|...+.+++..        .+   .....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~  169 (291)
T COG0457         104 LLEALGKYEEALELLEKALALDP------DPDLAEALLALGALYELGDYEEALELYEKALEL--------DPELNELAEA  169 (291)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCCC------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCccchHHH
Confidence            99999999999999988863211      11222333344 899999999999999999664        22   45666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005139          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (712)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (712)
                      +..++..+...++++.|+..+.+++......        ....+..++..+...++++.|+..+..++...+.       
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------  234 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-------  234 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------
Confidence            6777777889999999999999999984331        4667889999999999999999999999988665       


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      ....+..++..+...+.++++...+.+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         235 NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2345666777777778899999999999885

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.27  E-value=4e-05  Score=69.26  Aligned_cols=203  Identities=16%  Similarity=0.066  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                      ..+..++..|..|-..|-+.-|.--|.+++      ...|..+.+++.+|..+...|+|+.|.+.|...+++        
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaL------ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------  128 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQAL------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------  128 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhh------hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence            345567778888888898999998898888      457888999999999999999999999999999998        


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL-QKALKIYN  548 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~  548 (712)
                      +|..-.+..+.|..++--|++.-|.+-+.+-.+-      ...+|... .|..+-   ...-++.+|...+ +++.....
T Consensus       129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d~  198 (297)
T COG4785         129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSDK  198 (297)
T ss_pred             CCcchHHHhccceeeeecCchHhhHHHHHHHHhc------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhccH
Confidence            8888889999999999999999998877665544      22344322 222221   2234666776544 34443332


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                      ...|    ...+-+.       +|+..+ ...++++.+..+. ...-...+..+++.||..+...|+.++|..+|+-|+.
T Consensus       199 e~WG----~~iV~~y-------LgkiS~-e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         199 EQWG----WNIVEFY-------LGKISE-ETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             hhhh----HHHHHHH-------HhhccH-HHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            2211    1111122       233221 1233333332221 0111133557899999999999999999999998876


Q ss_pred             H
Q 005139          629 I  629 (712)
Q Consensus       629 ~  629 (712)
                      -
T Consensus       266 n  266 (297)
T COG4785         266 N  266 (297)
T ss_pred             H
Confidence            4

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.27  E-value=0.0061  Score=60.49  Aligned_cols=299  Identities=15%  Similarity=0.061  Sum_probs=206.9

Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (712)
                      -|.+..-.|+-..|...-.++-.+...   ...|.    ++..-++.-...|+++.|.+-|+.++..         |+.-
T Consensus        90 tGliAagAGda~lARkmt~~~~~llss---DqepL----IhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEtR  153 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSS---DQEPL----IHLLEAQAALLEGDYEDARKKFEAMLDD---------PETR  153 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhc---cchHH----HHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHHH
Confidence            477777789999999998888755421   22222    3566677888899999999999987764         4432


Q ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          351 -ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       351 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                       .-+..|-.--...|..+.|+.+.+++-...+...        .+....-...+..|+++.|+++.+..........+..
T Consensus       154 llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~--------WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a  225 (531)
T COG3898         154 LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP--------WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA  225 (531)
T ss_pred             HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc--------hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence             2233333344578999999999999988876553        1333344456788999999999987754433333222


Q ss_pred             h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          430 E--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       430 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      .  .+..+...+... ...+...|.....+++++        .|+.+..-..-+..+++.|+..++-.+++.+-+.    
T Consensus       226 eR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~----  292 (531)
T COG3898         226 ERSRAVLLTAKAMSL-LDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA----  292 (531)
T ss_pred             HHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence            2  222333333322 234678888888888888        7777888888899999999999999999888775    


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                         ..||.+...|     ++.+.|  +.++.-++++-.+..-.    +.........+...+.-|+|..|..--+.+..+
T Consensus       293 ---ePHP~ia~lY-----~~ar~g--dta~dRlkRa~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         293 ---EPHPDIALLY-----VRARSG--DTALDRLKRAKKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             ---CCChHHHHHH-----HHhcCC--CcHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence               2366654333     233444  45666677766654322    223456677888899999999998888777764


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 005139          588 LRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSI  629 (712)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~  629 (712)
                      .       +  ...++..|+.+-... |+-.++..++-+++..
T Consensus       359 ~-------p--res~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         359 A-------P--RESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             C-------c--hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            2       1  236778888888766 9999999999998874

>PRK15331 chaperone protein SicA; Provisional

Probab=98.24  E-value=2.9e-05  Score=68.12  Aligned_cols=103  Identities=9%  Similarity=-0.003  Sum_probs=88.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      +.........+..|.-++..|++++|...|+-..-.        ++.....+..||.++..+++|++|+..|..+..+..
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~  102 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK  102 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            455666777888999999999999999999887776        667778899999999999999999999999988743


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                      .      +   +...+..|.+|+.+|+.+.|+..|+.++.
T Consensus       103 ~------d---p~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 N------D---YRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             C------C---CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            2      2   23377899999999999999999999987

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.23  E-value=3.1e-06  Score=63.70  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                      +.+|..+...|++++|+..|+++++.        +|....+++.+|.++..+|++++|+.+|++++++.+.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            35789999999999999999999987        7899999999999999999999999999999987654

>PRK11906 transcriptional regulator; Provisional

Probab=98.23  E-value=5.2e-05  Score=77.68  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHH---HHHHHHhCCCChhHHHHHHHHHHHHHHh---------CCHHHHHHHHHH
Q 005139          311 HMQLGDTYAMLGQ---LENSLMCYTTGL---EVQKQVLGETDPRVGETCRYLAEAHVQA---------LQFSEAQKFCQM  375 (712)
Q Consensus       311 ~~~lg~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~  375 (712)
                      ++..|......+.   .+.|+.+|.+|+   .+        +|..+.+|..++.|++..         ....+|.++.++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4666666655543   467888899988   55        789999999999998865         234567777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY  455 (712)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  455 (712)
                      |+++.+..        +.++..+|.+....++++.|...|++|+      ...|..+.+++..|.+....|+.++|...+
T Consensus       330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~------~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAK------IHSTDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHh------hcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77776443        4588999999999999999999999998      468889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 005139          456 QKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCEN  499 (712)
Q Consensus       456 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~  499 (712)
                      ++++++        .|....+-...-.+ .+.....++|+.+|-+
T Consensus       396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            999998        66544433332233 3344557777777654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.22  E-value=7.7e-05  Score=61.62  Aligned_cols=102  Identities=22%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (712)
                      ...+-..|..+...|+ .+.|++.|.+++.+.         |..+.+|.+.+..+.-+|+.++|+.-+++++++..    
T Consensus        43 S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~---------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag----  108 (175)
T KOG4555|consen   43 SRELELKAIALAEAGD-LDGALELFGQALCLA---------PERASAYNNRAQALRLQGDDEEALDDLNKALELAG----  108 (175)
T ss_pred             HHHHHHHHHHHHhccc-hHHHHHHHHHHHHhc---------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC----
Confidence            3445566777778887 999999999999987         66788999999999999999999999999999862    


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  337 (712)
                      +. ....-.++...|.+|..+|+-+.|..-|+.+.++
T Consensus       109 ~~-trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  109 DQ-TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             cc-chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            22 2334557899999999999999999999999877

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00065  Score=63.84  Aligned_cols=246  Identities=15%  Similarity=0.104  Sum_probs=150.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHH
Q 005139          229 RELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKF  308 (712)
Q Consensus       229 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  308 (712)
                      +.++-.|. |..++....+.-.       ..   ........+.+.|..+|++...+.-...+         ...   ..
T Consensus        16 Rn~fY~Gn-yq~~ine~~~~~~-------~~---~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~~~---~l   72 (299)
T KOG3081|consen   16 RNYFYLGN-YQQCINEAEKFSS-------SK---TDVELDVYMYRAYLALGQYQIVISEIKEG---------KAT---PL   72 (299)
T ss_pred             HHHHHhhH-HHHHHHHHHhhcc-------cc---chhHHHHHHHHHHHHcccccccccccccc---------cCC---hH
Confidence            44556664 7666655443321       11   22334445788888899887655433322         111   22


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (712)
                      .+...++.....-++.+.-+.-..+.+..      .........+..-|.+|...|++++|++.......+-        
T Consensus        73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--------  138 (299)
T KOG3081|consen   73 QAVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--------  138 (299)
T ss_pred             HHHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--------
Confidence            23555666655555555544444433322      1122233444556788899999999999887643332        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 005139          389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKT  464 (712)
Q Consensus       389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  464 (712)
                           +...-..++.+..+++-|...+++...+    .+    -.++..||..+..    .+.+.+|.-+|++.-+.   
T Consensus       139 -----~~Al~VqI~lk~~r~d~A~~~lk~mq~i----de----d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---  202 (299)
T KOG3081|consen  139 -----AAALNVQILLKMHRFDLAEKELKKMQQI----DE----DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---  202 (299)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHcc----ch----HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---
Confidence                 2333445677777888888777766522    11    2334445554443    34567777777765543   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                           .+.....++.++.++..+|+|++|...++.++....         ..+.++.++-.+-...|...++..-+-
T Consensus       203 -----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~---------~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  203 -----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA---------KDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             -----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC---------CCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence                 455677889999999999999999999999998732         246678888888888888777665443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.21  E-value=4.7e-05  Score=62.83  Aligned_cols=102  Identities=16%  Similarity=0.090  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      ..+-..|......|+.+.|++.|.+++.+        -|..+.+|++.+..+..+|+.++|+.-+++++++.     +..
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~  110 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQ  110 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Ccc
Confidence            34455677888999999999999999999        78889999999999999999999999999999996     333


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                      ......++...|.+|..+|+-+.|...|+.|-++-
T Consensus       111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            55667889999999999999999999999988763

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.20  E-value=4.3e-05  Score=82.50  Aligned_cols=131  Identities=13%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc--------HHHHHHHHHHHH
Q 005139          476 VFVRLADMYNRTG---KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE--------LEQAIKLLQKAL  544 (712)
Q Consensus       476 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al  544 (712)
                      -++..|.-|...+   .+..|+.+|++|+++         .|..+.++..++.+|.....        ...+.....+++
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS---------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3344444444443   377999999999999         66677888888877765432        233333344333


Q ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005139          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE  624 (712)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  624 (712)
                      .+.    . .+....++..+|..+...|++++|...+++|+.+-        +. ..+|..+|.++...|++++|++.|+
T Consensus       412 al~----~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        412 ALP----E-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             hcc----c-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            321    1 11123577788888889999999999999999962        22 4799999999999999999999999


Q ss_pred             HHHHH
Q 005139          625 EARSI  629 (712)
Q Consensus       625 ~al~~  629 (712)
                      +|+.+
T Consensus       478 ~A~~L  482 (517)
T PRK10153        478 TAFNL  482 (517)
T ss_pred             HHHhc
Confidence            99998

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.18  E-value=0.0002  Score=66.96  Aligned_cols=241  Identities=13%  Similarity=0.083  Sum_probs=164.5

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005139          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (712)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~  316 (712)
                      .+++|+.-|++++++-     +.....-..++..+..+++++|+|++-...|.+.+.........++..-.   ...+-.
T Consensus        42 ~p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs---IN~IlD  113 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS---INSILD  113 (440)
T ss_pred             CHHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH---HHHHHH
Confidence            3899999999999874     33333446788889999999999999999999998876544444443322   222222


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH----HHH
Q 005139          317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEA  392 (712)
Q Consensus       317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a  392 (712)
                      .-....+.+--..+|+..+...+..  .+......+-..||.+|+..++|..-.+.+.+.-..+....+.+..    ...
T Consensus       114 yiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL  191 (440)
T KOG1464|consen  114 YISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL  191 (440)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence            2223344555556666666655442  2223344455678999999999999888888877776655443332    223


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      .+|..-..+|..+.+-..-...|++++.+-...+.+.-...+.-.-|..+.+.|+|++|-.-|-+|..-+.+.+.+ ...
T Consensus       192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRt  270 (440)
T KOG1464|consen  192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRT  270 (440)
T ss_pred             hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chh
Confidence            4555556778888888888888999987766666555555566666788899999999999999998887777633 233


Q ss_pred             HHHHHHHHHHHHHHcC
Q 005139          473 VASVFVRLADMYNRTG  488 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g  488 (712)
                      .+.-|..||.++...|
T Consensus       271 tCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  271 TCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            4445666777777665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.18  E-value=1.3e-05  Score=60.28  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=54.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (712)
Q Consensus       397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (712)
                      .+|..+...|++++|+..|++++      ...|....++..+|.++..+|++++|+.+|++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            57899999999999999999998      677889999999999999999999999999999988

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.16  E-value=5.3e-05  Score=78.06  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=100.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (712)
Q Consensus       398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (712)
                      |-.++...++++.|+..+++...      ..|.   +...++.++...++..+|+..+.+++..        .|.....+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~------~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL  237 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRE------RDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL  237 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHh------cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            34445567889999999988652      3343   4456899999999999999999999976        67778899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK  542 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (712)
                      ...+..+...++++.|+.+.+++..+         .|.....|..|+.+|...|+++.|+..+..
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~l---------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVEL---------SPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh---------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            99999999999999999999999999         566788999999999999999999977663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.16  E-value=5.1e-05  Score=81.93  Aligned_cols=131  Identities=13%  Similarity=0.036  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHH
Q 005139          310 GHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALD  378 (712)
Q Consensus       310 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~  378 (712)
                      -++..|..|...++   +..|+.+|++++++        +|..+.++..++.+|.....+        ..+.....+++.
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            35666766666554   78999999999999        899999998888877664332        233333333333


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      +..   ++..   ..++..+|..+...|++++|..++++|+.+      .+. +.+|..+|.++...|++++|+..|++|
T Consensus       413 l~~---~~~~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        413 LPE---LNVL---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             ccc---CcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            211   1111   346778899999999999999999999853      343 678999999999999999999999999


Q ss_pred             HHH
Q 005139          459 LTA  461 (712)
Q Consensus       459 l~~  461 (712)
                      +.+
T Consensus       480 ~~L  482 (517)
T PRK10153        480 FNL  482 (517)
T ss_pred             Hhc
Confidence            998

>PRK11906 transcriptional regulator; Provisional

Probab=98.15  E-value=5.6e-05  Score=77.42  Aligned_cols=165  Identities=12%  Similarity=0.041  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---------CCHhHHHHHHHHh
Q 005139          223 LLLKQARELISSGD--NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL---------GQYNEAIPVLEQS  291 (712)
Q Consensus       223 ~l~~~a~~~~~~g~--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~---------g~~~~A~~~~~~a  291 (712)
                      -++..|...+..+.  ....|+.+|.+|+..      ...+|..+.+|..++.|++..         ....+|..+.++|
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA  330 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV  330 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            44667777766652  134566666666622      234477888999999998765         2345777888888


Q ss_pred             hchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          292 IEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (712)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (712)
                      +++.     +.++.    ++..+|.+....++++.|+..|++|+.+        +|+.+.+++..|.+....|+.++|.+
T Consensus       331 veld-----~~Da~----a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~  393 (458)
T PRK11906        331 SDIT-----TVDGK----ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARI  393 (458)
T ss_pred             HhcC-----CCCHH----HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            8876     55554    4899999999999999999999999999        79999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                      .+++++++.|....       .....+..-.+.....+.|+..|-+
T Consensus       394 ~i~~alrLsP~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        394 CIDKSLQLEPRRRK-------AVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHhccCchhhH-------HHHHHHHHHHHcCCchhhhHHHHhh
Confidence            99999988754321       1222222212334456677766643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=3.3e-05  Score=79.58  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=101.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (712)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (712)
                      |-.++...++++.|+.++++..+..+.           +...++.++...++..+|+..+.+++.      ..|..+..+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL  237 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL  237 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence            344455678899999999987655421           455689999999999999999999983      344457888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                      ...+..+...++++.|+.+.+++..+        .|.....|..|+.+|...|+++.|+..++.+
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            89999999999999999999999999        8999999999999999999999999877644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.0064  Score=59.19  Aligned_cols=302  Identities=14%  Similarity=0.101  Sum_probs=193.2

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhh-cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEE-GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      ..+.......++++++..|.+.+....... ++......-.+...+|..|...|+..+-..........+..+.   .+.
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kak   85 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAK   85 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHH
Confidence            345555566777888888888877421110 1111111223578899999999999887777766655544321   233


Q ss_pred             HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          349 VGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       349 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      .+.....|-..+. ..+.++.-+.++..+++.......  ....-..-..+..+|...++|.+|+......+..++..++
T Consensus        86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD  163 (411)
T KOG1463|consen   86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD  163 (411)
T ss_pred             HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence            4444444444333 334566677788888877655432  2222334456788999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ......++..-..+|+...+..+|...+..|-..+...+.  +|.. +..=..=|.++....+|..|..||-+|++-+..
T Consensus       164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s  241 (411)
T KOG1463|consen  164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS  241 (411)
T ss_pred             ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence            9988888888899999999999999999888777666653  2322 222233356667778999999999999998766


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML--GNYSDSYDSFKNA  584 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a  584 (712)
                      .   +++.....++..+-.+-...+..++--.++..=..+.  ..|..   ..+...++.++...  .+|+.|+.-|..-
T Consensus       242 ~---~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~---i~AmkavAeA~~nRSLkdF~~AL~~yk~e  313 (411)
T KOG1463|consen  242 L---DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRD---IDAMKAVAEAFGNRSLKDFEKALADYKKE  313 (411)
T ss_pred             c---CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcc---hHHHHHHHHHhcCCcHHHHHHHHHHhHHH
Confidence            3   3344455555555556666666666554443222221  11211   24555566666442  4556665555544


Q ss_pred             HH
Q 005139          585 IS  586 (712)
Q Consensus       585 l~  586 (712)
                      +.
T Consensus       314 L~  315 (411)
T KOG1463|consen  314 LA  315 (411)
T ss_pred             Hh
Confidence            43

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.001  Score=62.87  Aligned_cols=232  Identities=13%  Similarity=0.079  Sum_probs=156.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV  434 (712)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  434 (712)
                      .+|.-....+++++|+..|.+.+...-...+...-+.-.+...++.+|...|++..-.+........+.... .+....+
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~Ki   86 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITKI   86 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHHH
Confidence            455566677889999999988875511111111112233677899999999998877666655544333322 2333333


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          435 DCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       435 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ...+-.-+ .....++.-+..+...++.+.+...  .......-..+..+++..|+|.+|+....-.+.-+++   -++.
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DDK  161 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDDK  161 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcCc
Confidence            33332222 2345677778888888777654320  1112233456788899999999999999998888777   3445


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (712)
                      +.....+..-..+|....+..++..-+..|.......+-++...+.+-..-|.++....+|.-|..+|-+|++-+....
T Consensus       162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~  240 (421)
T COG5159         162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK  240 (421)
T ss_pred             cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence            6667788888999999999999999998888877776555555555555557777788899999999999988665443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=0.00047  Score=60.99  Aligned_cols=160  Identities=13%  Similarity=0.067  Sum_probs=119.9

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      ..+.=+.+....-..+.+++.+...         -.+.||......|++.+|..+|++++.     +........+..++
T Consensus        66 ~~q~ldP~R~~Rea~~~~~~ApTvq---------nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA  131 (251)
T COG4700          66 LQQKLDPERHLREATEELAIAPTVQ---------NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLA  131 (251)
T ss_pred             HHHhcChhHHHHHHHHHHhhchhHH---------HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHH
Confidence            3334455555555555555554332         467889999999999999999999974     44445567788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (712)
                      ...+..+++..|...+++..+.-.      ....+.....+|..|..+|++.+|...|+.++..+..          ..+
T Consensus       132 ~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~a  195 (251)
T COG4700         132 QAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQA  195 (251)
T ss_pred             HHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHH
Confidence            999999999999999998887621      1123456778899999999999999999999998543          445


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ....+..+..+|+.++|..-+....+....
T Consensus       196 r~~Y~e~La~qgr~~ea~aq~~~v~d~~~r  225 (251)
T COG4700         196 RIYYAEMLAKQGRLREANAQYVAVVDTAKR  225 (251)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            566788899999999988877766655443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.11  E-value=0.0064  Score=60.80  Aligned_cols=254  Identities=18%  Similarity=0.118  Sum_probs=148.3

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh----CCCC----hh
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-DHEAALEHLVLASMTMIA----NDQD----AE  430 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~----~~~~----~~  430 (712)
                      ....|+++.|..++.++-..............+..+++.|.-....+ +++.|..+++++..++..    ....    ..
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999887753333334456788999999999999 999999999999988644    1222    23


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ...++..++.+|...+.++...+ ..+++.......+ +++   ..+..--.++...++.+++.+.+.+++.-..-.   
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---  154 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---  154 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhcccc---
Confidence            56778889999999888765444 4444555544433 233   333222233334888999999988888764311   


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML--GNYSDS--YDSFKNAIS  586 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~  586 (712)
                        ....-.+...+ ..+.. .....|...+...+...-....+.  ..... .+-.++...  ++....  ++.....+.
T Consensus       155 --e~~~~~~l~~i-~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  155 --ESNFDSILHHI-KQLAE-KSPELAAFCLDYLLLNRFKSSEDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             --cchHHHHHHHH-HHHHh-hCcHHHHHHHHHHHHHHhCCChhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence              11111111111 11222 234567777766665433321111  22221 112222222  222222  334444444


Q ss_pred             HHHHh-CCCCChH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          587 KLRAI-GERKSAF----FGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       587 ~~~~~-~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                      ..... ...-...    .-..+.+.|...+..++|.+|+.+|+-++.
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            32222 2222221    123566778889999999999999998773

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.11  E-value=4.4e-05  Score=67.03  Aligned_cols=98  Identities=15%  Similarity=0.067  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      .+...+..|.-++..|++++|..+|+-..-.        ++...+.+..||.++..+++|++|+..|..+..+......|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            4566899999999999999999999987766        66777889999999999999999999999999887655443


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                              .+..|.++...|+...|+..|..++.
T Consensus       108 --------~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        108 --------VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             --------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                    67899999999999999999998874

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.11  E-value=0.00081  Score=63.53  Aligned_cols=175  Identities=18%  Similarity=0.181  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      -+..+++-|...+..|+|++|...|+.....     -+..|....+...++..+++.+++++|+..+++-+.++..    
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~----  103 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT----  103 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC----
Confidence            4566788899999999999999999987754     1234556788999999999999999999999999999655    


Q ss_pred             CCChhHHHHHHHHHHHHHHc-----cc---HHHHHHHHHHHHHHHHhCCCCCC----------cHHHHHHHHHHHHHHcC
Q 005139          511 VPPEEIASGLTDVSSIYESM-----NE---LEQAIKLLQKALKIYNDAPGQQS----------TVAGIEAQMGVMYYMLG  572 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~la~~~~~~g  572 (712)
                        ++....+++..|.+++..     .+   ..+|+..|+..+..+|+..=...          .++.--..+|..|.+.|
T Consensus       104 --~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~  181 (254)
T COG4105         104 --HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG  181 (254)
T ss_pred             --CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              667777888888877653     23   34555556666555554311111          12222346788999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE  621 (712)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  621 (712)
                      .+..|+..++.+++-+...     .....++..+..+|..+|-.++|..
T Consensus       182 ~~~AA~nR~~~v~e~y~~t-----~~~~eaL~~l~eaY~~lgl~~~a~~  225 (254)
T COG4105         182 AYVAAINRFEEVLENYPDT-----SAVREALARLEEAYYALGLTDEAKK  225 (254)
T ss_pred             ChHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHHhCChHHHHH
Confidence            9999999999998864332     3345788999999999999888865

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.11  E-value=0.0024  Score=63.83  Aligned_cols=253  Identities=14%  Similarity=0.110  Sum_probs=144.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhc---CC---CCCHHH
Q 005139          319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDN---GS---PASLEE  391 (712)
Q Consensus       319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~---~~---~~~~~~  391 (712)
                      ...|+++.|..++.++-.+............+..+++.|......+ +++.|..+++++.++....   ..   ......
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            5689999999999998877542211112356788999999999999 9999999999999997441   11   112345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTM-IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      ..++..++.+|...+.++...+.. .++... ...++++...   ...-.+....++.+.+.+.+.+++.-..-     .
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~-~~l~~l~~e~~~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----~  154 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKAL-NALRLLESEYGNKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH-----S  154 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHH-HHHHHHHHhCCCCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----c
Confidence            678899999999998876554432 233333 2233444332   22223333478899998888888775221     1


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc--cHHHH--HHHHHHHHHH
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQA--IKLLQKALKI  546 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al~~  546 (712)
                      .............+.. .....|...+...+...-..  ..+.  ..... .+..++...+  +....  ++.+...+..
T Consensus       155 e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~  228 (278)
T PF08631_consen  155 ESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSI  228 (278)
T ss_pred             cchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence            1111221222222222 33456667776666543221  1111  11111 1222222222  22222  3334444443


Q ss_pred             HHhCCCCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          547 YNDAPGQQS------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       547 ~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                      .....+.+-      ....++.+.|..+++.++|.+|..+|+-++.
T Consensus       229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            222222221      2223456778899999999999999998764

It is also involved in sporulation [].

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.0013  Score=63.75  Aligned_cols=261  Identities=18%  Similarity=0.133  Sum_probs=169.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGS--PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (712)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (712)
                      ..+.......++++++..+...+........  ......-.+...+|.+|...|+.++-..........+...+ .+..+
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-Kakaa   87 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-KAKAA   87 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-hHHHH
Confidence            3344445556677788888777764211110  01111223567899999999999888777766544333322 22233


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          433 SVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       433 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      .....+-..+. .-+..+.-+.++..+++.+.+...  .......-..+..+|...++|.+|+.+....++-.++.   +
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---D  162 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---D  162 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---c
Confidence            33333333333 234556777788888877665321  11222344578899999999999999999988887773   3


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (712)
                      +......++..-..+|+...+..+|...+..|.......+-++...+.+-..-|.++....+|.-|..||-+|.+-+..+
T Consensus       163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~  242 (411)
T KOG1463|consen  163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL  242 (411)
T ss_pred             cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence            45556777788889999999999999999988887776655555555555556777888899999999999999987776


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          592 GERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       592 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      +.....  ..++..|-.+-...+..++-..++
T Consensus       243 ~~~v~A--~~sLKYMlLcKIMln~~ddv~~ll  272 (411)
T KOG1463|consen  243 DDDVKA--LTSLKYMLLCKIMLNLPDDVAALL  272 (411)
T ss_pred             CCcHHH--HHHHHHHHHHHHHhcCHHHHHHHH
Confidence            654222  344444445555556655544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.08  E-value=3.1e-05  Score=73.63  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      .++.|.-++..|+|..|...|..-++.     .++.+....+++.||.+++.+|+|++|...|..+.+-+.+      ++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------SP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------CC
Confidence            778888899999999999999998887     3456778899999999999999999999999999998655      56


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ..+.+++.||.+...+|+.++|...|+++++.+|..
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            677899999999999999999999999999887755

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.07  E-value=0.00053  Score=64.77  Aligned_cols=173  Identities=17%  Similarity=0.135  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      .++.-|......|+|++|+..|+.+....     +..|....+...++.++++.+++++|+..+++-+.+++...+    
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n----  106 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN----  106 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC----
Confidence            48899999999999999999999987652     234666789999999999999999999999999999876654    


Q ss_pred             HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCChhH--------------HHHHHHHHHHHHHcCCHHH
Q 005139          390 EEAADRRLMGLICETK-----GDHEAALEHLVLASMTMIANDQDAEV--------------ASVDCSIGDTYLSLSRYDE  450 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~~  450 (712)
                       ...+++..|.++...     .+...+...+...-......++.+-.              +.--..+|..|.+.|.+..
T Consensus       107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence             344667777776532     34444444444333333443433322              2223467899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (712)
Q Consensus       451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (712)
                      |+..++.+++-+..     .+....++..+...|..+|-.++|...-
T Consensus       186 A~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         186 AINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            99999999987443     4566788899999999999999986643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.07  E-value=0.028  Score=60.49  Aligned_cols=175  Identities=16%  Similarity=0.087  Sum_probs=121.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVA----SVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      +..-.|+-+.++..+.++..   ..+-....+    ..|+.....+.    .....+.|...+......        .|.
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~---~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~  265 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASK---SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPN  265 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCC
Confidence            33456899999999988753   111111111    11222111121    234556777777777766        788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005139          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (712)
                      .+..+...|+++...|+.++|++.|++++......     ......+++.++.++..+.+|++|..++.+..+..     
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----  335 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----  335 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----
Confidence            88889999999999999999999999988532221     22345678899999999999999999999887642     


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhCCCCCh
Q 005139          553 QQSTVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                       ....+...+..|.++...|+.       ++|..+|.++-.+..+......|
T Consensus       336 -~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp  386 (468)
T PF10300_consen  336 -KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP  386 (468)
T ss_pred             -ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence             223345567788999999999       88888888887777664444444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=0.001  Score=62.23  Aligned_cols=143  Identities=15%  Similarity=0.050  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                      ...+.+.++.++.-.+.|.-....+.+.++..+..       .......||.+.++.|+.+.|..+|+..-+.......-
T Consensus       176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~  248 (366)
T KOG2796|consen  176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL  248 (366)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence            34566778888888999999999999988844222       13367789999999999999999999776555555555


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .....+..+.+.+|.-.+++..|...|.+++..        ++..+.+.++.|.|+...|+..+|++.++.++.+...
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            666778888999999999999999999999887        7778889999999999999999999999999988544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.00015  Score=64.73  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      .+-.-|.-++..|+|++|..-|..|+..+..... ......|.+.|.++.+++.++.|+....+++++        .|..
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty  167 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY  167 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence            3445678889999999999999999987755433 455678899999999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ..++...|.+|..+.+|++|++-|.+.+++
T Consensus       168 ~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  168 EKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.00021  Score=68.94  Aligned_cols=120  Identities=14%  Similarity=0.140  Sum_probs=95.6

Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLR  589 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~  589 (712)
                      +|..+..|..||.+|..+|++..|...|.+|+++.++.       ..++..+|.+++.+.   ...++...|++++..  
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-------PEILLGLAEALYYQAGQQMTAKARALLRQALAL--  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--
Confidence            56678889999999999999999999999999998766       357777888877654   467899999999885  


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  651 (712)
                            .+....+++.||..+++.|+|.+|...++..++.    ..++.|....+-..++..
T Consensus       223 ------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         223 ------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA  274 (287)
T ss_pred             ------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence                  2334589999999999999999999999999887    344455544444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=7.6e-05  Score=71.95  Aligned_cols=97  Identities=15%  Similarity=0.040  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----------hhhhCCCCh
Q 005139          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----------EEKLGTANP  666 (712)
Q Consensus       597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----------~~~l~~~~p  666 (712)
                      +..+.-|..||.+|..+|++..|...|.+|+++        .|++...+..+|.++..+..          .+.....+|
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            334578999999999999999999999999999        89999999999998887665          555567899


Q ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .+..+++.||..++.+|++.+|. ..++.+|+..|.
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~  259 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPA  259 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCC
Confidence            99999999999999999999999 999999999886

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=0.0001  Score=65.76  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                      +..+..-|.-++..|+|++|..-|..|+.+++..+.  .....+|.+.|.++.+++.++.|+.-..+|+++        .
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~  164 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------N  164 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------C
Confidence            344556788889999999999999999999987643  334456789999999999999999999999997        3


Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  651 (712)
                      +.+..++...|.+|.++..|++|++-|.+.+++        +|....+...++.+
T Consensus       165 pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  165 PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL  211 (271)
T ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence            456688889999999999999999999999998        77766655554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.97  E-value=3.8e-05  Score=73.10  Aligned_cols=105  Identities=14%  Similarity=0.078  Sum_probs=88.7

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      +..|.-++..|+|..|...|..-++..     |+... ...+++.||.+++.+|+|+.|...|..+++-+     +.+|.
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            334555667899999999999999876     44433 34579999999999999999999999999875     33678


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (712)
                      ..++++.||.+...+|+.++|...|+++++.+|...
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            889999999999999999999999999999887653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.017  Score=54.36  Aligned_cols=238  Identities=13%  Similarity=0.077  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhh----------hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE----------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  337 (712)
                      +...-.++.++..+++|..-++-.-++....          .+.....+-+.....-|.+....|+..+.+.-+......
T Consensus        72 wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~  151 (366)
T KOG2796|consen   72 WTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV  151 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            3334455566666777766555433332100          000001112334455677777888888887777665554


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                      .+++               -..+......+..+..+++-+..              +.+.+..++.-.|.|.-.+..+.+
T Consensus       152 V~~i---------------i~~~e~~~~~ESsv~lW~KRl~~--------------Vmy~~~~~llG~kEy~iS~d~~~~  202 (366)
T KOG2796|consen  152 VSKI---------------LANLEQGLAEESSIRLWRKRLGR--------------VMYSMANCLLGMKEYVLSVDAYHS  202 (366)
T ss_pred             HHHH---------------HHHHHhccchhhHHHHHHHHHHH--------------HHHHHHHHHhcchhhhhhHHHHHH
Confidence            3221               11111222234455555554432              567788889999999999999998


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (712)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (712)
                      .+.     .+++........+|.+..+.||.+.|..+|++.-+....+.+  -.....+..+.+.+|.-.+++.+|...|
T Consensus       203 vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~r~~  275 (366)
T KOG2796|consen  203 VIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAHRFF  275 (366)
T ss_pred             HHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHHHHH
Confidence            875     344555667788899999999999999999977665554432  3445667888899999999999999999


Q ss_pred             HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      .+++..         ++..+.+.++.|.|+.-.|+...|++.++.++...|..
T Consensus       276 ~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  276 TEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            998877         34456778899999999999999999999998876644

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.92  E-value=0.001  Score=58.97  Aligned_cols=134  Identities=14%  Similarity=0.163  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      .-.+.+|......|++.+|..+|++++.-       -.......+..++...+..+++..|...+++..+.-..      
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------  156 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------  156 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc------
Confidence            44567899999999999999999999863       13344678889999999999999999999988776322      


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                       ...+.....+|..|..+|.+.+|...|+.++..++..        ......+..+..+|+..+|..-+....+..
T Consensus       157 -~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         157 -FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP--------QARIYYAEMLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             -cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--------HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence             1123446788999999999999999999999987654        344567888999999999887776665543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.90  E-value=0.00029  Score=60.60  Aligned_cols=120  Identities=13%  Similarity=0.122  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (712)
                      ...++.-|...+..|+|.+|++.|+.....+     +..+....+...||.+|...+++++|+..+++.+++     .|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence            3567788999999999999999999876642     223344578999999999999999999999999997     577


Q ss_pred             ChhhHHHHHHHHHHHHHccc--hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          638 HPDTLGVYSNLAGTYDAIGR--EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       638 ~p~~~~~~~~La~~~~~~g~--~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ||+...+++..|.++..+..  ...+-              ..-...+...+|. ..|+.++...|+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~--------------~~drD~~~~~~A~-~~f~~lv~~yP~  131 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFF--------------RSDRDPTPARQAF-RDFEQLVRRYPN  131 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhc--------------ccccCcHHHHHHH-HHHHHHHHHCcC
Confidence            88888899999988887654  11111              2223344566888 999999999998

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=0.035  Score=59.22  Aligned_cols=62  Identities=16%  Similarity=0.049  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEV-----QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                      .|..||......-.++-|...|-++-..     .+++     .....--...|.+-..-|+|++|.++|-.+
T Consensus       694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~  760 (1189)
T KOG2041|consen  694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDA  760 (1189)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence            4888888887777788888777765322     1111     000000122344445557888888777543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.024  Score=53.88  Aligned_cols=229  Identities=13%  Similarity=0.076  Sum_probs=157.5

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      .+|.-....+++++|+..|.+.+.--.... .......-.+...++.+|...|++..--+......+......   .|..
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~d-ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~   83 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKD-EKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI   83 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChh-hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence            356677788999999999999886511100 111111223578899999999998776666655555444321   2444


Q ss_pred             HHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          350 GETCRYLAEAH-VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       350 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                      ..+...|-.-+ .....++.-+..+...++...+...  .......-..+..+++..|.|.+|+....-.+..+...++.
T Consensus        84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK  161 (421)
T COG5159          84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK  161 (421)
T ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence            44444443333 2345677777788777776654331  12222334567888999999999999999998888888999


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      +....++..-..+|....+..++..-+..|-..+...+.  .|.. +..-..-|.+++...+|..|..+|-++++-+..
T Consensus       162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~  238 (421)
T COG5159         162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL  238 (421)
T ss_pred             cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence            999999999999999999999999988888777766653  2222 222222355667788999999999999987755

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.86  E-value=0.0018  Score=66.51  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=72.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccch---
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA---  304 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---  304 (712)
                      ....++.. ++++-++...+||++.         |+.+.+|..||.-.  .....+|..+|+++++..+...+....   
T Consensus       175 Mq~AWRER-np~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~  242 (539)
T PF04184_consen  175 MQKAWRER-NPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQH  242 (539)
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence            33344454 4999999999999987         55677777666532  345788999999988876443332110   


Q ss_pred             -------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          305 -------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (712)
Q Consensus       305 -------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (712)
                                   ...+.+...+|.|..++|+.++|++.++..++...      ..+...+..+|..++...+.|.++..
T Consensus       243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHH
Confidence                         00122334455555555555555555555444310      01233344555555555555555544


Q ss_pred             HHHH
Q 005139          372 FCQM  375 (712)
Q Consensus       372 ~~~~  375 (712)
                      ++.+
T Consensus       317 lL~k  320 (539)
T PF04184_consen  317 LLAK  320 (539)
T ss_pred             HHHH
Confidence            4443

The molecular function of this protein is uncertain.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.0033  Score=60.99  Aligned_cols=166  Identities=12%  Similarity=-0.023  Sum_probs=128.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVD  435 (712)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  435 (712)
                      -+.+.+..|++.+|....++.++-+|...        .++..--.+++..|+...-...+++.+..  -+.+.|....+.
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~  178 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVH  178 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHH
Confidence            34566778999999999999888775542        24444556778888888888888876521  134566677778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005139          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (712)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (712)
                      ..++..+...|-|++|++..++++++        ++....+...++.++...|++.++.++..+.-...+..     ...
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-----~ml  245 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-----WML  245 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-----hHH
Confidence            88899999999999999999999999        88888899999999999999999999988766554431     122


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (712)
                      ...-|...|.++...+.|+.|++.|.+-+
T Consensus       246 asHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  246 ASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            33445677888889999999999998644

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.85  E-value=0.0003  Score=60.49  Aligned_cols=108  Identities=17%  Similarity=0.086  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..++.-|...+..|+|.+|++.|+.+....     |-.+. .-.+...||.+|+..+++++|+..+++-+++.     +
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P   78 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----P   78 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C
Confidence            4457778999999999999999999987765     22222 22358899999999999999999999999984     5


Q ss_pred             CChhHHHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHHHhc
Q 005139          345 TDPRVGETCRYLAEAHVQALQ---------------FSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~  383 (712)
                      .+|....+++..|.+++.+..               ...|...|++.+..+|+.
T Consensus        79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            578899999999999998876               778888888888877654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.83  E-value=4.9e-05  Score=57.69  Aligned_cols=53  Identities=30%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +..|++++|+..|++++..        .|....++..+|.+|...|++++|..++++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999998        8888999999999999999999999999999887

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.82  E-value=3.8e-05  Score=51.69  Aligned_cols=41  Identities=44%  Similarity=0.531  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD  640 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~  640 (712)
                      +.++.+||.+|..+|++++|..++++++.+.++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46889999999999999999999999999999999999995

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.78  E-value=7.4e-05  Score=76.44  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=50.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA---SVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      .|..+..++++|.+|+.+|+|++|+..|++++++        .|+..   .+|+++|.+|..+|++++|+.++++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566777777777777777777777777777777        45444   45777777777777777777777777776

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.78  E-value=0.00013  Score=70.58  Aligned_cols=99  Identities=19%  Similarity=0.235  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      +-..|.-|+++|.|++|+.+|.+++..        .|.++..+.+.|..|+++.+|..|..-+..|+.+         +.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~  162 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DK  162 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hH
Confidence            345688999999999999999999998        8888889999999999999999999999999998         44


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      .+..+|...+.+-..+|...+|.+.++.++++-+..
T Consensus       163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            478899999999999999999999999999987653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.76  E-value=0.00014  Score=56.14  Aligned_cols=59  Identities=24%  Similarity=0.340  Sum_probs=55.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      |..+|...+++++|+.++++++.+        +|.....+..+|.++..+|++.+|...|+++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            356889999999999999999999        88899999999999999999999999999999884

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.72  E-value=8.8e-05  Score=56.25  Aligned_cols=67  Identities=19%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005139          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (712)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  647 (712)
                      ++..|++++|+.+|++++..        .+....++..+|.+|...|++++|...+++++..        +|+....+.-
T Consensus         1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHH
Confidence            35789999999999999986        2334578889999999999999999999999987        7776666655


Q ss_pred             HHH
Q 005139          648 LAG  650 (712)
Q Consensus       648 La~  650 (712)
                      +|.
T Consensus        65 ~a~   67 (68)
T PF14559_consen   65 LAQ   67 (68)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.70  E-value=0.14  Score=56.79  Aligned_cols=229  Identities=16%  Similarity=0.094  Sum_probs=130.7

Q ss_pred             cccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005139          198 KKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS  277 (712)
Q Consensus       198 ~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~  277 (712)
                      ...++|.+|......+...+|+...+....|..+++.|+ .++|..+++ ++...     ...   .-..+..+-.+|..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le-~~~~~-----~~~---D~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLE-ALYGL-----KGT---DDLTLQFLQNVYRD   89 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHh-hhccC-----CCC---chHHHHHHHHHHHH
Confidence            344566667777777888899999999999999999997 888885443 33321     111   24456678899999


Q ss_pred             cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH-HHHHH
Q 005139          278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE-TCRYL  356 (712)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l  356 (712)
                      ++++++|..+|++++...     |. .    ..++.+-.+|.+.+.|.+-.+.   ++++++.     -|..+. .|..+
T Consensus        90 ~~~~d~~~~~Ye~~~~~~-----P~-e----ell~~lFmayvR~~~yk~qQka---a~~LyK~-----~pk~~yyfWsV~  151 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKY-----PS-E----ELLYHLFMAYVREKSYKKQQKA---ALQLYKN-----FPKRAYYFWSVI  151 (932)
T ss_pred             HhhhhHHHHHHHHHHhhC-----Cc-H----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-----CCcccchHHHHH
Confidence            999999999999998776     32 1    1356666677777777654433   3333332     122222 22223


Q ss_pred             HHHHHHhCCHHHHHH-----HHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          357 AEAHVQALQFSEAQK-----FCQMALDIHKDNGS-PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       357 a~~~~~~g~~~~A~~-----~~~~al~~~~~~~~-~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      ..+.......+.+..     +.+++.+..-...+ -......   ...-.++..+|++++|++.+..-+..    ...+.
T Consensus       152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~---~Lyl~iL~~~~k~~eal~~l~~~la~----~l~~~  224 (932)
T KOG2053|consen  152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI---ILYLLILELQGKYQEALEFLAITLAE----KLTSA  224 (932)
T ss_pred             HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH---HHHHHHHHhcccHHHHHHHHHHHHHH----hcccc
Confidence            333333333333222     12222221111111 1111111   22234667889999999988543211    11222


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (712)
                      ...........+...++|.+-.+...+++..
T Consensus       225 ~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  225 NLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             chHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            2233334456667778888877777777665

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.70  E-value=0.00022  Score=54.97  Aligned_cols=70  Identities=19%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005139          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (712)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~  643 (712)
                      |..+|...+++++|+.++++++.+.        |.....+..+|.++..+|++.+|...|+++++.        .|+...
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--------~p~~~~   64 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALEL--------SPDDPD   64 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--------CCCcHH
Confidence            3568899999999999999999972        334578999999999999999999999999988        666555


Q ss_pred             HHHHHH
Q 005139          644 VYSNLA  649 (712)
Q Consensus       644 ~~~~La  649 (712)
                      +....+
T Consensus        65 ~~~~~a   70 (73)
T PF13371_consen   65 ARALRA   70 (73)
T ss_pred             HHHHHH
Confidence            544433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.68  E-value=0.0002  Score=73.43  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                      .|..+..++++|.+|...|+|++|+..|++++++..      ++.....+|+++|.+|..+|++++|+.++++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P------d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP------NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678899999999999999999999999999999932      23322356999999999999999999999999997

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.075  Score=59.25  Aligned_cols=141  Identities=16%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      +|..+|.+....|...+|++.|-+|-          +|   ..|.....+....|.|++-++++..+.+..+...     
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----- 1167 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----- 1167 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-----
Confidence            37777777777777777777666531          22   3445555566667777777777766665543322     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                          +-..|-.+|...++..+-.+++.           .|..+. ....|.-++..|.|+.|.-+|..            
T Consensus      1168 ----id~eLi~AyAkt~rl~elE~fi~-----------gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------------ 1219 (1666)
T KOG0985|consen 1168 ----IDSELIFAYAKTNRLTELEEFIA-----------GPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------------ 1219 (1666)
T ss_pred             ----chHHHHHHHHHhchHHHHHHHhc-----------CCCchh-HHHHhHHHhhhhhhHHHHHHHHH------------
Confidence                12234444555555554443321           122221 23456666666777666555532            


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                          ..-|..|+..+..+|+|..|....++|
T Consensus      1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                233455666777777777777666655

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.68  E-value=0.088  Score=54.92  Aligned_cols=270  Identities=13%  Similarity=0.052  Sum_probs=149.1

Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH-
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV-  349 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-  349 (712)
                      .+.+.+++|+|+.-..+....-.        ..+    ...+..+......++++++..+.+++.......+....... 
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~--------~~~----~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~   71 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNE--------DSP----EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESY   71 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccC--------CCh----hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            36778889999984444433221        111    12344455555889999999999998887654332211111 


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ..++-.+.. +....+.+++..+..........     .......|..  .+-....+++--...+.-=..++.......
T Consensus        72 ~~~y~~l~~-lq~L~Elee~~~~~~~~~~~~~~-----~~~l~~~W~~--Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~  143 (352)
T PF02259_consen   72 QRAYPSLVK-LQQLVELEEIIELKSNLSQNPQD-----LKSLLKRWRS--RLPNMQDDFSVWEPILSLRRLVLSLILLPE  143 (352)
T ss_pred             HHHHHHHHH-HhHHHHHHHHHHHHHhhcccHHH-----HHHHHHHHHH--HHHHhccchHHHHHHHHHHHHHHhcccchh
Confidence            122222221 22223333443333111000000     0000001111  111112222221111110001111112356


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR-IYEKPV  508 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~  508 (712)
                      ..+..+..++.+....|.++.|...+.++.......    ......+....+.++...|+..+|+..++..+. ......
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            677888999999999999999999999887652111    111456777889999999999999999988888 322210


Q ss_pred             ------------------------CCCCChhHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 005139          509 ------------------------PGVPPEEIASGLTDVSSIYESM------NELEQAIKLLQKALKIYNDAPGQQSTVA  558 (712)
Q Consensus       509 ------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (712)
                                              ........+.++..+|......      +..++++..|.++..+.+..       .
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~  292 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-------E  292 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH-------H
Confidence                                    1122344567777788877777      88888999999998887655       2


Q ss_pred             HHHHHHHHHHHHc
Q 005139          559 GIEAQMGVMYYML  571 (712)
Q Consensus       559 ~~~~~la~~~~~~  571 (712)
                      ..+..+|..+...
T Consensus       293 k~~~~~a~~~~~~  305 (352)
T PF02259_consen  293 KAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            4566666665543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.17  Score=56.62  Aligned_cols=216  Identities=19%  Similarity=0.164  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      ...|..+|.+....|...+|++.|-++-          +|.    .|...-......|.|++-+.++.-+.+-.++    
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyikad----------Dps----~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E---- 1165 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------DPS----NYLEVIDVASRTGKYEDLVKYLLMARKKVRE---- 1165 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhcC----------CcH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC----
Confidence            4467789999999999999999997752          332    3777888888999999999998887665433    


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  424 (712)
                        |..   -..|-.+|.+.++..+-.+++.          +++..    -....|.-++..|.|+.|.-+|...      
T Consensus      1166 --~~i---d~eLi~AyAkt~rl~elE~fi~----------gpN~A----~i~~vGdrcf~~~~y~aAkl~y~~v------ 1220 (1666)
T KOG0985|consen 1166 --PYI---DSELIFAYAKTNRLTELEEFIA----------GPNVA----NIQQVGDRCFEEKMYEAAKLLYSNV------ 1220 (1666)
T ss_pred             --ccc---hHHHHHHHHHhchHHHHHHHhc----------CCCch----hHHHHhHHHhhhhhhHHHHHHHHHh------
Confidence              211   1233344555666555443321          11111    2345677777777777776666432      


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HH---------------HhcCCCCHHHHHHHHHHHHHHHHc
Q 005139          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA--FK---------------TNKGENHPAVASVFVRLADMYNRT  487 (712)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~---------------~~~~~~~~~~~~~~~~la~~~~~~  487 (712)
                              .-+..++..+..+|+|..|....++|-..  ++               ++.|-+-.-.+.-+-.+...|...
T Consensus      1221 --------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDR 1292 (1666)
T ss_pred             --------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc
Confidence                    23455666677777777777776665332  11               111111112234455677788899


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                      |-|++-+.+++.++.+-+.         ..-.+..||.+|.+- ++++-.++++
T Consensus      1293 GyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred             CcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            9999999999998887443         244567777777653 4555544443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.62  E-value=0.18  Score=55.88  Aligned_cols=230  Identities=16%  Similarity=0.068  Sum_probs=134.9

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH
Q 005139          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (712)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (712)
                      ...++ +.+|+....+.++-.         |...-+...-|..+.++|++++|..+++..-...     ..+    -.++
T Consensus        20 ld~~q-fkkal~~~~kllkk~---------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~tL   80 (932)
T KOG2053|consen   20 LDSSQ-FKKALAKLGKLLKKH---------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLTL   80 (932)
T ss_pred             hhhHH-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHHH
Confidence            44444 788888877776643         3333344446888999999999997776543332     222    2247


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (712)
                      ..+-.+|..++++++|..+|++++..        .|. -..+..+-.+|.+.+.|.+-.+.--+..+..++..   ..  
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~---yy--  146 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA---YY--  146 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc---ch--
Confidence            78889999999999999999999987        466 56677777788888877665544333333333322   11  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          392 AADRRLMGLICETKGDHEAALE-----HLVLASMT-MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~-----~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                        .|..+..+.......+....     +-++.... ....+.-...+.+. ..-.++..+|++++|...+..-+.  ...
T Consensus       147 --fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l  221 (932)
T KOG2053|consen  147 --FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL  221 (932)
T ss_pred             --HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc
Confidence              23344444444444444333     11111111 11122111222222 223456678999999998843322  111


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                          .+............+...+++.+-.++..+++..
T Consensus       222 ----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  222 ----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             ----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence                2333333345566677788888877777777666

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.61  E-value=0.015  Score=64.25  Aligned_cols=282  Identities=19%  Similarity=0.152  Sum_probs=178.5

Q ss_pred             CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005139          280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML-----GQLENSLMCYTTGLEVQKQVLGETDPRVGETCR  354 (712)
Q Consensus       280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  354 (712)
                      +...|..+++.+....           .+.+...+|.+|..-     .+.+.|+.+|+.+...+.+...   .....+.+
T Consensus       227 ~~~~a~~~~~~~a~~g-----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~---~~~~~a~~  292 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLG-----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT---KGLPPAQY  292 (552)
T ss_pred             hhhHHHHHHHHHHhhc-----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh---hcCCcccc
Confidence            3567888888776653           333467778877654     6899999999999883221110   11234677


Q ss_pred             HHHHHHHHhC-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCC
Q 005139          355 YLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       355 ~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  426 (712)
                      .+|.+|....     ++..|..+|.++-..-.          ..+.+.+|.++..-.   ++..|.++|..|..      
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------  356 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGN----------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK------  356 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhcCC----------chHHHHHHHHHHcCCccccHHHHHHHHHHHHH------
Confidence            8899888743     67788888888765431          226778888887765   67899999998862      


Q ss_pred             CChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 005139          427 QDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENAL  501 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al  501 (712)
                        .....+.+.+|.+|..    .-+...|..+++++.+.        .  .+.+...++.++..- +++..+.-.+....
T Consensus       357 --~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  357 --AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------G--NPSAAYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             --cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------c--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence              2334667778877764    35789999999999887        2  123344444444332 77777777666665


Q ss_pred             HHHhcCCCCCCChhH-HHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----C
Q 005139          502 RIYEKPVPGVPPEEI-ASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----G  572 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~-~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g  572 (712)
                      +..-+      .+.. +..+..........    .+...+...+.++...-     .    ..+...||.+|+.-    .
T Consensus       425 ~~g~~------~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-----~----~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  425 ELGYE------VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG-----N----ADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             Hhhhh------HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc-----C----HHHHhhhcceeeecCCCCC
Confidence            55222      1111 11111111111111    14455555555554331     1    23566788887764    4


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Q 005139          573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR---YSINEAVELFEEARSI  629 (712)
Q Consensus       573 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~  629 (712)
                      +++.|...|.+|...          . +...+++|.++..-   ..+..|..+|.++.+.
T Consensus       490 d~~~a~~~y~~a~~~----------~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQ----------G-AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE  538 (552)
T ss_pred             ChHHHHHHHHHHHHh----------h-hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence            689999999998763          1 57888999888742   1268888888888774

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.60  E-value=0.064  Score=55.96  Aligned_cols=158  Identities=13%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      .....+..++.+..+.|+++.|..++.++......     .....+.+....+.++...|+..+|+..++..+.......
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~-----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS-----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc-----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            44555666666666666666666666655444211     1222445555556666666666666666655555221110


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh------CCHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR------YSINEAVELFEE  625 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~  625 (712)
                      .........  ..+..+    ..+....         ...........+.++..+|......      +..+++...|.+
T Consensus       219 ~~~~~~~~~--~~~~~~----~~~~~~~---------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~  283 (352)
T PF02259_consen  219 IDSISNAEL--KSGLLE----SLEVISS---------TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE  283 (352)
T ss_pred             cccccHHHH--hhcccc----ccccccc---------cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence            100000000  000000    0000000         0001112234567888888888888      899999999999


Q ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       626 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +..+        +|....++..+|..+...-.
T Consensus       284 a~~~--------~~~~~k~~~~~a~~~~~~~~  307 (352)
T PF02259_consen  284 ATKL--------DPSWEKAWHSWALFNDKLLE  307 (352)
T ss_pred             HHHh--------ChhHHHHHHHHHHHHHHHHH
Confidence            9999        88888899999998876544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.58  E-value=0.00036  Score=67.48  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=86.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (712)
Q Consensus       396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (712)
                      -..|.-|+.+|.|++|+.+|.+++      ...|..+..+.+.|..|+++.+|..|..-+..|+.+        +.....
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~i------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~K  166 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAI------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVK  166 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhh------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHH
Confidence            456889999999999999999988      456666778899999999999999999999999999        778889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          476 VFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      +|...+..-..+|...+|.+-++.++++-
T Consensus       167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  167 AYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            99999999999999999999999999983

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.24  Score=60.71  Aligned_cols=373  Identities=11%  Similarity=0.028  Sum_probs=191.0

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchH
Q 005139          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (712)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (712)
                      .+|..-+..+. |.+|+-++++- .     ............+..+-.+|...++++.-......-...       .   
T Consensus      1388 tLa~aSfrc~~-y~RalmylEs~-~-----~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-------~--- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKA-YARALMYLESH-R-----STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-------P--- 1450 (2382)
T ss_pred             HHHHHHHhhHH-HHHHHHHHHHh-c-----cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-------c---
Confidence            56767777775 88888887763 0     001111222334555566888899988877766531111       0   


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       306 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                          .+...-..+...|++..|..+|++++..        +|.....+...-...+..|.+...+...+-...-.     
T Consensus      1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~----- 1513 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR----- 1513 (2382)
T ss_pred             ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-----
Confidence                1445556677789999999999998877        34433334444444455566665555333222111     


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------HHH---HHHHhCCCChhHHHHHHHHHHHH----------HHc
Q 005139          386 PASLEEAADRRLMGLICETKGDHEAALEHLV-------LAS---MTMIANDQDAEVASVDCSIGDTY----------LSL  445 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~-------~al---~~~~~~~~~~~~~~~~~~la~~~----------~~~  445 (712)
                        +...-..+..--.+.+..++++.-..+..       .+.   .+.-... ..+....+..+....          ...
T Consensus      1514 --se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~-~kD~~~~~~~i~~~r~~~i~~lsa~s~~ 1590 (2382)
T KOG0890|consen 1514 --SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNK-KKDEIATLDLIENSRELVIENLSACSIE 1590 (2382)
T ss_pred             --CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhc-ccchhhHHHHHHHHHHHhhhhHHHhhcc
Confidence              01111111111222355566555544422       000   0000000 000011111111110          011


Q ss_pred             CCHHHHHHHHHHHHHHHHH------h----cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005139          446 SRYDEAGFAYQKALTAFKT------N----KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE  515 (712)
Q Consensus       446 g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  515 (712)
                      |-|..+.++.-+...+.+-      .    .+.+......-|.+....-....+..+-+-.+++++-.....  ......
T Consensus      1591 ~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~~~ 1668 (2382)
T KOG0890|consen 1591 GSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLKSR 1668 (2382)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--ccccch
Confidence            1333333333332222110      0    011111111122222221112222344444445544433221  133556


Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCC
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI-GER  594 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~  594 (712)
                      .+.+|...|++....|+++.|..++-.|.+...         ..++...|..++..|+-..|+..+++.+.....- ..+
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL---------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence            899999999999999999999999888876542         3577889999999999999999999999765432 111


Q ss_pred             --------CChHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139          595 --------KSAFFGVALNQMGLACVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       595 --------~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  654 (712)
                              .......+...++......+++  ..-+.+|..+.++        +|..-..++.+|..|.+
T Consensus      1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred             ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHH
Confidence                    1111223455555555666663  3446778888887        55555556666644443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.46  E-value=0.039  Score=56.30  Aligned_cols=178  Identities=14%  Similarity=0.093  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhcCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR---TGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      ..+..++-..|....+|+.-+.+.+..-.+    ...+.+....+...+|.++.+   .|+.++|+..+..++.....  
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~--  214 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN--  214 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--
Confidence            345556667788899998888877665443    001123345567788888888   99999999999997655322  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (712)
                            ..+.++..+|.+|...         ...++|+.+|.++.++.+..        ..-.+++.++...|...+...
T Consensus       215 ------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--------Y~GIN~AtLL~~~g~~~~~~~  280 (374)
T PF13281_consen  215 ------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--------YSGINAATLLMLAGHDFETSE  280 (374)
T ss_pred             ------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--------cchHHHHHHHHHcCCcccchH
Confidence                  2355688888887652         24678888888887775433        123466667777776444443


Q ss_pred             HHHHHH-HHHH---HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          580 SFKNAI-SKLR---AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       580 ~~~~al-~~~~---~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      -+++.. .+..   +.+.......-..+..++.+..-.|++++|.+++++++.+
T Consensus       281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            333333 2211   2222222222244556677888899999999999999987

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.012  Score=57.32  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=68.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (712)
                      .+..|++.+|.....+.++-        .|....++..--..++..|+...-...+++.+....     .+.|-...+.-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-----~dlp~~sYv~G  179 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-----ADLPCYSYVHG  179 (491)
T ss_pred             hhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-----CCCcHHHHHHH
Confidence            33444555554444444443        444444444444444445554444444444433321     11233333344


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (712)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (712)
                      .++-.+...|-|++|.+..++++++.+..       ..+...++.++...|++.++.++..+.-...+..    ......
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~D-------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasH  248 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRFD-------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASH  248 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCcc-------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhh
Confidence            44444455555555555555555443221       2233344444555555555555444433322210    011112


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          602 ALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       602 ~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      -|...|.++...+.|+.|++.|.+
T Consensus       249 NyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  249 NYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hhHHHHHhhhcccchhHHHHHHHH
Confidence            233344444444555555555543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.43  E-value=0.037  Score=61.13  Aligned_cols=281  Identities=16%  Similarity=0.064  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-----CCHhHHHHHHHHhhchhhhhhcccchHHHHHHHH
Q 005139          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSL-----GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM  312 (712)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  312 (712)
                      ...|..+++.+.+.-           ...+...+|.+|..-     .+.+.|+.+|+.+..-........++.    +.+
T Consensus       228 ~~~a~~~~~~~a~~g-----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~----a~~  292 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG-----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP----AQY  292 (552)
T ss_pred             hhHHHHHHHHHHhhc-----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc----ccc
Confidence            356777777665532           245666678887754     689999999999987210000011221    377


Q ss_pred             HHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcC
Q 005139          313 QLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---QFSEAQKFCQMALDIHKDNG  384 (712)
Q Consensus       313 ~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  384 (712)
                      .+|.+|....     ++..|..+|.++...          ....+.+.+|.++..-.   ++..|.++|..|.....   
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---  359 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---  359 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---
Confidence            8999998853     678899999998776          34467888898888665   56789999988865421   


Q ss_pred             CCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 005139          385 SPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKAL  459 (712)
Q Consensus       385 ~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al  459 (712)
                             ..+.+.++.+|..    .-+...|..++.++...     ..   +.+...++.++.. .++++.+...+....
T Consensus       360 -------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-----g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  360 -------ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-----GN---PSAAYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             -------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-----cC---hhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence                   2367777877764    45789999999988632     11   2223333333332 277777777766555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc----c
Q 005139          460 TAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----N  531 (712)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  531 (712)
                      ++.-+.    ....+..+..........    .+...+...+.++...           ....+...||.+|..-    .
T Consensus       425 ~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  425 ELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCC
Confidence            542221    111111111111111111    1344455555554433           2355677888887764    4


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 005139          532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---GNYSDSYDSFKNAIS  586 (712)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~  586 (712)
                      +++.|...|.++....          +...+++|.++..-   ..+..|..+|.++..
T Consensus       490 d~~~a~~~y~~a~~~~----------~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQG----------AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             ChHHHHHHHHHHHHhh----------hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence            6899999998887654          35778888888652   126788888888766

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00093  Score=61.68  Aligned_cols=99  Identities=21%  Similarity=0.283  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      +..-|..++.-.+|+.|+..|.+++.+        +|..+..+.+.+.+|++..+++.+..-..+++++         .+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~   75 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP   75 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence            344566777888999999999999998        8999999999999999999999999999999999         56


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ..+..++.+|........|++|+..+++|..+....
T Consensus        76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            678999999999999999999999999999988765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.37  E-value=0.25  Score=51.62  Aligned_cols=138  Identities=8%  Similarity=-0.113  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      |....+++.|-.-+..+ -+++..+.|++.+...     +..+.    +|...........+|+.-..+|.++|.-.-  
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvL--   84 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVL--   84 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--
Confidence            45577788777777666 9999999999998876     44443    377777777888999999999999886521  


Q ss_pred             hCCCChhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------HHHcCCHHHH
Q 005139          342 LGETDPRVGETC-RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI---------CETKGDHEAA  411 (712)
Q Consensus       342 ~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~---------~~~~g~~~~A  411 (712)
                             ....| ..|..+....|+...+....-+|.+......+- .+....+|...+..         +..+.+.+.-
T Consensus        85 -------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v  156 (656)
T KOG1914|consen   85 -------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAV  156 (656)
T ss_pred             -------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence                   12222 234445555666666666655665554333221 11111122222221         2334466667


Q ss_pred             HHHHHHHH
Q 005139          412 LEHLVLAS  419 (712)
Q Consensus       412 ~~~~~~al  419 (712)
                      ...|++|+
T Consensus       157 RriYqral  164 (656)
T KOG1914|consen  157 RRIYQRAL  164 (656)
T ss_pred             HHHHHHHh
Confidence            77788776

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.36  E-value=0.031  Score=45.77  Aligned_cols=120  Identities=18%  Similarity=0.111  Sum_probs=86.1

Q ss_pred             HHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          349 VGETCRYLA--EAHVQALQFSEAQKFCQMALDIHKDNGSPASL----EEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       349 ~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                      ++.+|..|+  .-.+.-|-|++|..-+.+++++..........    ..+.++..|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            445555554  34556789999999999999998776554322    246678889999999999999999999999887


Q ss_pred             HhCCC-Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          423 IANDQ-DA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (712)
Q Consensus       423 ~~~~~-~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (712)
                      ...+. +.    ....+.++.|..+...|+.++|+..|+.+-++..+..|+
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            65332 22    234556788999999999999999999999988776554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.36  E-value=0.043  Score=44.96  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          516 IASGLTDVSSI--YESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       516 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      ++.+|..|+..  .+.-|-|++|..-+.+|+++....+....     .-+.++..|+.++..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            45555555544  44568899999999999999988755432     335577889999999999999999999999998


Q ss_pred             HHhCCCCC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       589 ~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      ..-++.+.   .....+.++.|..+...|+.++|+..|+.+-++..+.-|
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            87665443   234456677889999999999999999999998776555

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.34  E-value=0.0033  Score=59.54  Aligned_cols=100  Identities=19%  Similarity=0.136  Sum_probs=80.8

Q ss_pred             cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-----ChHHHHHHH
Q 005139          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-----SAFFGVALN  604 (712)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~  604 (712)
                      ...+++|++.|.-|+-...-........+.++..+|++|...|+.+....++++|+..+.+.....     ......+++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            446889999999888877655445557888999999999999999988899999988887653221     223457888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          605 QMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       605 ~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .+|.+..+.|++++|..+|.+.+..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999998874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0012  Score=61.03  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      +..-|..++.-.+|..|+..|.+++.+.     |..+    ..+.+.+.+|++..+++.+..-..+++++        .|
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~n-----P~~~----~Y~tnralchlk~~~~~~v~~dcrralql--------~~   75 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICIN-----PTVA----SYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP   75 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcC-----CCcc----hhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence            4445788888899999999999999886     3332    34889999999999999999999999999        79


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      +.+..++.+|.+......|++|+..++++..+......+
T Consensus        76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~  114 (284)
T KOG4642|consen   76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT  114 (284)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999888776543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0023  Score=62.03  Aligned_cols=106  Identities=14%  Similarity=0.166  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (712)
                      .+..+..-|.-|+...+|..|+..|.+.|...     ..++...+.+|.+.|-+....|+|..|+.-..+++.+      
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            46666777999999999999999999999875     5555667778999999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                        +|....+++.-|.|++.+.++++|..+++..+.+...
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence              7999999999999999999999999999998776533

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.33  E-value=0.0087  Score=54.96  Aligned_cols=112  Identities=15%  Similarity=0.227  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ......++..+|..|.+.|++++|++.|.++......      .......+..+..+....+++.....++.++..+...
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            5667789999999999999999999999998887433      4567888999999999999999999999999998776


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      . ++.......-..-|..++..++|.+|...|-.+..-+
T Consensus       106 ~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  106 G-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             c-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            4 4444444455567778888999999999988876543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.32  E-value=0.34  Score=52.07  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=61.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh----hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV----IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTT  333 (712)
Q Consensus       258 ~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  333 (712)
                      ..|+|..   +..||......-.++-|...|-+.-....    +..+.-+.     --...+.+-..-|+|++|.+.|-.
T Consensus       688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s-----~~~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS-----KEQQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh-----HHHHhHhHhhhhcchhHhhhhhhc
Confidence            4566544   55567777666677777777766543310    00000000     013345555556788888777654


Q ss_pred             H------HHHHHHH-------------h-CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          334 G------LEVQKQV-------------L-GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (712)
Q Consensus       334 a------l~~~~~~-------------~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (712)
                      +      +++..++             . +.++.....++.++|..+..+..|++|.++|...-
T Consensus       760 ~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  760 ADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             cchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3      2222211             0 22334556677788888888888888877776543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.32  E-value=0.0098  Score=54.60  Aligned_cols=126  Identities=16%  Similarity=0.114  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005139          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (712)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (712)
                      -++.-+...+.+........++..+|..|...|+++.|++.|.++.+....     .......+..+..+....+++...
T Consensus        18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v   92 (177)
T PF10602_consen   18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHV   92 (177)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHH
Confidence            344444444445566777888999999999999999999999998876332     445678889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                      ..++.++-.+...   +.+..........-|..++..++|.+|...|-.+..-+
T Consensus        93 ~~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   93 EKYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            9999999998877   33333444455666777788899999998887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.30  E-value=0.028  Score=57.31  Aligned_cols=206  Identities=14%  Similarity=0.081  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005139          324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE  403 (712)
Q Consensus       324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~  403 (712)
                      +..+...+.+.+...+..++...-....+..++-..|....+|+.-+++.+..-.+- ..   .......+....|.++.
T Consensus       115 ~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-~~---~~~~~~~i~~~yafALn  190 (374)
T PF13281_consen  115 YSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-TC---DVANQHNIKFQYAFALN  190 (374)
T ss_pred             HhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-cc---chhcchHHHHHHHHHHh
Confidence            333444555555554444443223344566677778888999998888877654441 11   11112335667788888


Q ss_pred             H---cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          404 T---KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       404 ~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +   .|+.++|+..+..++.     ......+.++..+|.+|-..         ...++|+.+|.++.++        .+
T Consensus       191 Rrn~~gdre~Al~il~~~l~-----~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~  257 (374)
T PF13281_consen  191 RRNKPGDREKALQILLPVLE-----SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EP  257 (374)
T ss_pred             hcccCCCHHHHHHHHHHHHh-----ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cc
Confidence            8   9999999999988653     23444556777778877532         2367778888877776        33


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH---HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENAL-RI---YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                       ....-.+++.++...|...+...-+++.. .+   ..+.. ........+.+..++.+..-.|++++|.+.+++++.+.
T Consensus       258 -~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg-~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  258 -DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG-SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             -cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence             33455677777777776444433333322 11   11110 11122334556678888888999999999999999874


Q ss_pred             H
Q 005139          548 N  548 (712)
Q Consensus       548 ~  548 (712)
                      +
T Consensus       336 ~  336 (374)
T PF13281_consen  336 P  336 (374)
T ss_pred             C
Confidence            3

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.28  E-value=0.00058  Score=45.78  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      +.++.++|.+|..+|++++|+.++++++.+.++..|+++|+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46788999999999999999999999999999998888874

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.26  E-value=0.00077  Score=45.75  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~  650 (712)
                      .++..+|.+|...|++++|+.+|+++++.        +|+...++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            46788999999999999999999999999        9999999988875

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.23  E-value=0.024  Score=58.65  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC--------
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV--------  511 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------  511 (712)
                      .-..+..+...-++..++|+++        .|+.+.+|..||.-.  ..-..+|+.+|+++++..+..+...        
T Consensus       176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~  245 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH  245 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence            3445677888889999999999        888888888877532  2346788888888888766543211        


Q ss_pred             --------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          512 --------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (712)
Q Consensus       512 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (712)
                              +..-...+...||.+..+.|+.++|++.++..++..+..     ....+..+|..++...+.|.++..++.+
T Consensus       246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                    011124566789999999999999999999988765421     2345888999999999999999888776


Q ss_pred             H
Q 005139          584 A  584 (712)
Q Consensus       584 a  584 (712)
                      -
T Consensus       321 Y  321 (539)
T PF04184_consen  321 Y  321 (539)
T ss_pred             h
Confidence            4

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.086  Score=47.74  Aligned_cols=100  Identities=12%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                      ..+...++..+...|++++|+..++.++....    +......+-.+|+.+...+|.+++|+..+.....         +
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~  155 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------E  155 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------c
Confidence            34556778889999999999999999885432    1222234556899999999999999988876533         2


Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ...+......|.++...|+-++|+..|++++..
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            334566778899999999999999999999987

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.039  Score=49.86  Aligned_cols=101  Identities=15%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      ..+...++..+...|++++|+..++.++.   ...+......+-..+|.+...+|.+++|+..+.....         +.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~  156 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES  156 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence            34556678889999999999999998872   2234445566778899999999999999988765432         34


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      .........|.++...|+-++|+..|++++...
T Consensus       157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         157 WAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            455667788999999999999999999999884

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.44  Score=50.09  Aligned_cols=218  Identities=11%  Similarity=0.019  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005139          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (712)
Q Consensus       311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (712)
                      ...-+..+...|+.+.|+..++.++...-+      .-....++.+|.++..+.+|..|-..+....+...-..      
T Consensus       270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~------  337 (546)
T KOG3783|consen  270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH------  337 (546)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH------
Confidence            566778888888899999999988873222      23456778899999999999999999888776643221      


Q ss_pred             HHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHhCC-CChhHHH----------------------HHHHH
Q 005139          391 EAADRRLMG-LICE--------TKGDHEAALEHLVLASMTMIAND-QDAEVAS----------------------VDCSI  438 (712)
Q Consensus       391 ~a~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~----------------------~~~~l  438 (712)
                       + .|..++ .++.        ..|+.+.|-.+++.........+ +.|....                      -++.+
T Consensus       338 -a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El  415 (546)
T KOG3783|consen  338 -A-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL  415 (546)
T ss_pred             -H-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence             1 233333 3332        24466666666665544443311 1111100                      11222


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          439 GDTYLSL--SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       439 a~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                      +.++...  ....+..    ++..-...-.-.+.....--+..+|.++..+|+...|..+|..+++.....  ..++...
T Consensus       416 ~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--~~d~w~~  489 (546)
T KOG3783|consen  416 AYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--TEDLWAV  489 (546)
T ss_pred             HHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--ccccccc
Confidence            2222211  1111111    211111111111344556677888999999999999999999888653332  4456667


Q ss_pred             HHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHH
Q 005139          517 ASGLTDVSSIYESMNE-LEQAIKLLQKALKIYN  548 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  548 (712)
                      +.+++.+|.+|..+|. ..++..++.+|.+...
T Consensus       490 PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~  522 (546)
T KOG3783|consen  490 PFALYELALLYWDLGGGLKEARALLLKAREYAS  522 (546)
T ss_pred             cHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence            8899999999999999 9999999999987653

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=0.55  Score=57.88  Aligned_cols=320  Identities=11%  Similarity=0.011  Sum_probs=162.8

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL-AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      .+|.+-++.+.|.+|+-++++- ..      .+... ..-..+..+-.+|...++++.-.-....-..         +|.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS 1451 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-cc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc
Confidence            6788889999999999999985 11      11111 1222355555699999999876655543111         121


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                          +...-..+...|++..|..+|++++...+....        .+..+-......|.+...+.+.+-...     ..+
T Consensus      1452 ----l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~--------~~~g~l~sml~~~~l~t~i~~~dg~~~-----~~s 1514 (2382)
T KOG0890|consen 1452 ----LYQQILEHEASGNWADAAACYERLIQKDPDKEK--------HHSGVLKSMLAIQHLSTEILHLDGLII-----NRS 1514 (2382)
T ss_pred             ----HHHHHHHHHhhccHHHHHHHHHHhhcCCCcccc--------chhhHHHhhhcccchhHHHhhhcchhh-----ccC
Confidence                223334566789999999999999877655321        122233333445555555544332210     111


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHH----------HHHcCCHH
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQ-------KALTAFKTNKGENHPAVASVFVRLADM----------YNRTGKLR  491 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~~  491 (712)
                      +.....+..--.+....++++.-..+.-       .+..+..-.......+....+..+...          ....|-|.
T Consensus      1515 e~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~ 1594 (2382)
T KOG0890|consen 1515 EEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYV 1594 (2382)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHH
Confidence            1111111111122244555554444321       000000000000000000010000000          00111222


Q ss_pred             HHHHHHHHHHHHH---------hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 005139          492 ESKSYCENALRIY---------EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (712)
Q Consensus       492 ~A~~~~~~al~~~---------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (712)
                      .+.++.-+...+.         .+...+.+......-|.+....-....+..+-+-.+++++-......+....++.+|.
T Consensus      1595 ~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wL 1674 (2382)
T KOG0890|consen 1595 RSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWL 1674 (2382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHH
Confidence            3333322222111         1111111111111112222222112222344444455555444333344567889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                      ..|++....|+++.|..++-.|.+..          ...+....|..++..|+...|+..+++.+.....
T Consensus      1675 qsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence            99999999999999999998887631          3478888999999999999999999999976543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.12  E-value=0.025  Score=50.38  Aligned_cols=122  Identities=20%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (712)
                      +...|......++...++..+.+++.++....-+....              ..-.......+..            ...
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~------------~~~   62 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLRE------------LYL   62 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHH------------HHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHH------------HHH
Confidence            34445556667888889999999988875443221110              0001111222222            124


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      .+...++..+...|++++|+..+++++.+        +|..-.++..+..+|...|+..+|+..|+++...+.+-+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el  130 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL  130 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence            56677888999999999999999999999        899999999999999999999999999999988877543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.10  E-value=0.0068  Score=60.58  Aligned_cols=136  Identities=12%  Similarity=0.089  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      +|..+.....+.+..+.|...|.+|+      ........+|...|.+-+. .++.+.|..+|+.+++.        .+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~   68 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRAR------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence            45566667777777999999999996      3444455678888888666 56666699999999988        555


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ....|......+...|+.+.|..+|++++.....      ......+|......-...|+.+...++.+++.+..+.
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            5677888888899999999999999999876322      1113567888888888999999999999999888665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.09  E-value=0.035  Score=49.47  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccch-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTG  334 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  334 (712)
                      +...|......++.+.++..+++++.+....+-+..+             ...+.++..++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3334566667788899999999999887533322211             113345677888899999999999999999


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      +.+        +|..-.++..+..+|...|+..+|+..|++......+.
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e  129 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE  129 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            999        89999999999999999999999999999998887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.05  E-value=0.13  Score=54.49  Aligned_cols=246  Identities=11%  Similarity=0.046  Sum_probs=134.7

Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHhC
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV---------QKQVLG  343 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~~~~~~  343 (712)
                      ..|...|.+++|...---.+.              ..-|..||.-....=+++-|.+.|.++..+         .+....
T Consensus       564 ~q~Ieag~f~ea~~iaclgVv--------------~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r  629 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLGVT--------------DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKR  629 (1081)
T ss_pred             hhhhhccchhhhhccccccee--------------cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence            456777888777543211111              111566666666666777777777665332         111111


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQM------ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                      ...|..    ..+|.++...|+|.+|.++|.+      |++++.+.          -.+.++.-+...|..++-....++
T Consensus       630 ge~P~~----iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl----------RMFD~aQE~~~~g~~~eKKmL~RK  695 (1081)
T KOG1538|consen  630 GETPND----LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL----------RMFDYAQEFLGSGDPKEKKMLIRK  695 (1081)
T ss_pred             CCCchH----HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHH
Confidence            111222    3467778888999999888864      34443322          234455566666666655555544


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Q 005139          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY------QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR  491 (712)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  491 (712)
                      -.......+.+..       -|.++...|+.++|+...      +-++++.+++    +......+..++..+.....+.
T Consensus       696 RA~WAr~~kePka-------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~g  764 (1081)
T KOG1538|consen  696 RADWARNIKEPKA-------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPG  764 (1081)
T ss_pred             HHHHhhhcCCcHH-------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccc
Confidence            4333333332221       256677788888887653      4455555544    3333445555666666666666


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 005139          492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML  571 (712)
Q Consensus       492 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  571 (712)
                      -|-+.|.+.-..                 ..+..++...++|.+|..+.++--+..+          .+++..|..+...
T Consensus       765 LAaeIF~k~gD~-----------------ksiVqlHve~~~W~eAFalAe~hPe~~~----------dVy~pyaqwLAE~  817 (1081)
T KOG1538|consen  765 LAAEIFLKMGDL-----------------KSLVQLHVETQRWDEAFALAEKHPEFKD----------DVYMPYAQWLAEN  817 (1081)
T ss_pred             hHHHHHHHhccH-----------------HHHhhheeecccchHhHhhhhhCccccc----------cccchHHHHhhhh
Confidence            665555443221                 2345566677888887766554333222          2444556666666


Q ss_pred             CCHHHHHHHHHHH
Q 005139          572 GNYSDSYDSFKNA  584 (712)
Q Consensus       572 g~~~~A~~~~~~a  584 (712)
                      .+|++|.+.|.+|
T Consensus       818 DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  818 DRFEEAQKAFHKA  830 (1081)
T ss_pred             hhHHHHHHHHHHh
Confidence            6666666666544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0071  Score=56.17  Aligned_cols=110  Identities=17%  Similarity=0.230  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP----------AVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                      ..++..-|.-++..|+|.+|...|+.|+...+.+.-...|          .....+.+++.++...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455666777888888888888888888776655322221          234578899999999999999999999998


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ..         ++....+|+..|.++...=+.++|...|.+++++.+..
T Consensus       258 ~~---------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  258 RH---------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hc---------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            88         56678999999999999999999999999999886654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.04  E-value=0.011  Score=55.97  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 005139          404 TKGDHEAALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN-----HPAVASVF  477 (712)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~  477 (712)
                      ....+++|++.|..|+......+ .+...+.++..+|++|..+|+.+....++++|++.+.+.....     ......++
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34568888888888887666444 4457888999999999999999988899999988887764322     23456788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      +.+|.++.+.|++++|..+|.+++...
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            999999999999999999999998874

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.96  E-value=0.0024  Score=40.44  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +.+|+.+|.+|..+|++++|+.+|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            367999999999999999999999999999

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.93  E-value=0.012  Score=52.49  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcCCCCCCChhHH
Q 005139          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL----------RESKSYCENALRIYEKPVPGVPPEEIA  517 (712)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~  517 (712)
                      |+.|.+.++.....        +|..+..+++.|..+..+.++          ++|+.-|++|+.+         .|...
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---------~P~~h   69 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---------NPNKH   69 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----------TT-H
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---------CCchH
Confidence            45666666666666        788888899988888766443          4455555666666         56677


Q ss_pred             HHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHH
Q 005139          518 SGLTDVSSIYESMNE-----------LEQAIKLLQKALKIYN  548 (712)
Q Consensus       518 ~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~  548 (712)
                      .++..+|.+|..++.           |++|..+|++|....|
T Consensus        70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P  111 (186)
T PF06552_consen   70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP  111 (186)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            889999999987664           4445555555554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.90  E-value=0.039  Score=57.77  Aligned_cols=106  Identities=16%  Similarity=0.121  Sum_probs=81.5

Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 005139          526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (712)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (712)
                      .+...|+...|++++..|+...+....      ..+.+||.++.+.|-.-.|-.++.+++.+..     ..+   ..++.
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep---l~~~~  681 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQD------VPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP---LTFLS  681 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhc------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc---hHHHh
Confidence            344578999999999999877654311      2456889999999988999999999998741     112   56788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005139          606 MGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (712)
Q Consensus       606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  653 (712)
                      +|.+|..+.+.+.|++.|++|++.        .|....+...|-.+-+
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKL--------TTKCPECENSLKLIRC  721 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHHHH
Confidence            999999999999999999999998        6666665555544444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.011  Score=54.90  Aligned_cols=112  Identities=17%  Similarity=0.038  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc---ccchH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG---QEHAL------AKFAGHMQLGDTYAMLGQLENSLMCYTTG  334 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  334 (712)
                      ...++..-|+-++..|+|.+|...|..|+.......-   |..+.      .....+.+.+.|+...|+|-+++++....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999876543321   21211      12235788999999999999999999999


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          335 LEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       335 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      +..        +|....+|+..|.++...-+.++|..-|.+++++.+..
T Consensus       257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            888        78999999999999999999999999999999887543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.86  E-value=0.79  Score=48.13  Aligned_cols=436  Identities=14%  Similarity=0.070  Sum_probs=223.1

Q ss_pred             ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHh
Q 005139          212 EAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQS  291 (712)
Q Consensus       212 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a  291 (712)
                      +....+|.+...+..+.+.+-.+ - ++++.+.|++.+..+         |..+.++.......+...+|+....+|.++
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~RC   79 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSRC   79 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            35577899999999998877766 4 999999999988765         333445555566777789999999999998


Q ss_pred             hchhhhhhcccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH---------H
Q 005139          292 IEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH---------V  361 (712)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------~  361 (712)
                      |.-.-          .+..| ..|..+....|+...+.....+|.++.....|- ++.....|...+..+         .
T Consensus        80 LvkvL----------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~e  148 (656)
T KOG1914|consen   80 LVKVL----------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYE  148 (656)
T ss_pred             HHHHh----------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHH
Confidence            86431          11222 234455556677777777777777766554442 233333343333222         1


Q ss_pred             HhCCHHHHHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------
Q 005139          362 QALQFSEAQKFCQMALDIH--------KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------  427 (712)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------  427 (712)
                      ...+.+.-.+.|++|+..-        .+...  -..........-.+-.....|..|...+++...+.+....      
T Consensus       149 e~QRI~~vRriYqral~tPm~nlEkLW~DY~~--fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp  226 (656)
T KOG1914|consen  149 ENQRITAVRRIYQRALVTPMHNLEKLWKDYEA--FEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP  226 (656)
T ss_pred             HHHHHHHHHHHHHHHhcCccccHHHHHHHHHH--HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            2235556666777776321        10000  0000000111112223344566676666665443332110      


Q ss_pred             ----Chh--HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHc
Q 005139          428 ----DAE--VASVDCSIGDTYLSLSRY----------DEAGFAYQKALTAFKTNKGENHPA----VASVFVRLADMYNRT  487 (712)
Q Consensus       428 ----~~~--~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~  487 (712)
                          ...  ....|.++  +-+.+.+.          ..-.-.|++++..+-     .+|.    ....+...+.++...
T Consensus       227 ~~~T~~e~~qv~~W~n~--I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~-----~~peiWy~~s~yl~~~s~l~~~~  299 (656)
T KOG1914|consen  227 PKGTKDEIQQVELWKNW--IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG-----YHPEIWYDYSMYLIEISDLLTEK  299 (656)
T ss_pred             CCCChHHHHHHHHHHHH--HHHHhcCCcccccccHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhhHHHHHh
Confidence                001  11222222  21221111          111223444444311     1222    233444556667777


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                      |+...|...-.++..+++....+. .......++.++..-...-   .++.-..++++++.+....+    +  -++..+
T Consensus       300 ~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~----t--Lv~~~~  372 (656)
T KOG1914|consen  300 GDVPDAKSLTDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL----T--LVYCQY  372 (656)
T ss_pred             cccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC----c--eehhHH
Confidence            776555555444444444321000 1112333333333322222   25555666777666544332    2  234445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV  644 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  644 (712)
                      -..-.+..-...|...|.+|-+.-+   ..++.   .+...+- -|...++..-|...|+-.+..        +++....
T Consensus       373 mn~irR~eGlkaaR~iF~kaR~~~r---~~hhV---fVa~A~m-Ey~cskD~~~AfrIFeLGLkk--------f~d~p~y  437 (656)
T KOG1914|consen  373 MNFIRRAEGLKAARKIFKKAREDKR---TRHHV---FVAAALM-EYYCSKDKETAFRIFELGLKK--------FGDSPEY  437 (656)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhccC---Ccchh---hHHHHHH-HHHhcCChhHHHHHHHHHHHh--------cCCChHH
Confidence            5555556667778888888765311   11111   1222222 244578999999999999887        5555554


Q ss_pred             HHHHHHHHHHccc-------hhhhCCC--Ch-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139          645 YSNLAGTYDAIGR-------EEKLGTA--NP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  701 (712)
Q Consensus       645 ~~~La~~~~~~g~-------~~~l~~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p  701 (712)
                      -......+...++       .+.+.+.  .+ .....|..+-..-..-|+...+. +.-++-....|
T Consensus       438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~  503 (656)
T KOG1914|consen  438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence            4555556666666       2222222  22 23355666666666677777776 55555555444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.013  Score=57.14  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      .+..+-.-|.-|++..+|..|+..|.++|..    ...+....+..|.+.|.+....|+|..|+.-+.+++.+       
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-------  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-------  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            3444444455555555555555555555443    11122334445555555555555555555555555554       


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                        .|....+++.=|.+++.+.++++|..+.+..+.+
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence              3334455555555555555555555555544443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.89  Score=47.92  Aligned_cols=248  Identities=13%  Similarity=0.048  Sum_probs=144.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005139          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (712)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (712)
                      ...+...+..+.  +.+.+++........+..    .....-+.++...|+.+.|+..+..++.    .....-....++
T Consensus       238 ~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~ga----~wll~~ar~l~~~g~~eaa~~~~~~~v~----~~~kQ~~~l~~f  307 (546)
T KOG3783|consen  238 ISFVLGTPNPDG--EECEKALKKYRKRYPKGA----LWLLMEARILSIKGNSEAAIDMESLSIP----IRMKQVKSLMVF  307 (546)
T ss_pred             HHHHcCCCCccH--HHHHHHhHHHHHhCCCCc----cHHHHHHHHHHHcccHHHHHHHHHhccc----HHHHHHHHHHHH
Confidence            334444454444  444444444433333222    2456678888888998888888887764    111223455678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHhcC
Q 005139          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA-DMYN--------RTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      .+|.++..+.+|..|...+....+.        ....--.|..++ .++.        ..|+-+.|..+++....+....
T Consensus       308 E~aw~~v~~~~~~~aad~~~~L~de--------sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a  379 (546)
T KOG3783|consen  308 ERAWLSVGQHQYSRAADSFDLLRDE--------SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA  379 (546)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhh--------hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence            8899999999999999998887776        222222233333 3332        2346666666666555544431


Q ss_pred             CCCCCChhHH--------------------H--HHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-CCCCCcHHHHHH
Q 005139          508 VPGVPPEEIA--------------------S--GLTDVSSIYESM--NELEQAIKLLQKALKIYNDA-PGQQSTVAGIEA  562 (712)
Q Consensus       508 ~~~~~~~~~~--------------------~--~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~  562 (712)
                        +.+.|...                    .  -+..++.++..-  ...++..    ++....... ..+.....--+.
T Consensus       380 --~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~l  453 (546)
T KOG3783|consen  380 --GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYL  453 (546)
T ss_pred             --cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHH
Confidence              11111100                    0  012222222111  1111111    222222111 122233444567


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH
Q 005139          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-INEAVELFEEARSI  629 (712)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~  629 (712)
                      .+|.++..+|+...|..+|...++.... ...++..++.+++.+|.+|..+|. ..+|..++.+|.+.
T Consensus       454 L~g~~lR~Lg~~~~a~~~f~i~~~~e~~-~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  454 LKGVILRNLGDSEVAPKCFKIQVEKESK-RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            8899999999999999999999876322 233455667899999999999998 99999999999876

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.79  E-value=0.0024  Score=43.30  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD  482 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  482 (712)
                      .++..+|.+|...|++++|+..|+++++.        +|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            46788999999999999999999999998        8888888888875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.73  E-value=0.033  Score=45.15  Aligned_cols=83  Identities=17%  Similarity=0.063  Sum_probs=68.2

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPA-SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (712)
                      ....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++++.+.+..++......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4578999999999999999987776543 123455678899999999999999999999999999999888888777776


Q ss_pred             HHHH
Q 005139          439 GDTY  442 (712)
Q Consensus       439 a~~~  442 (712)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6553

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.73  E-value=0.034  Score=45.07  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139          401 ICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (712)
                      .....|+|..|++.+.+............   ....++.++|.++...|++++|+..+++++.+.++..+  ......++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D--~~~l~~al   84 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD--RRCLAYAL   84 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC--HHHHHHHH
Confidence            34578999999999999988777666555   56777889999999999999999999999999998752  33444444


Q ss_pred             HHHHHH
Q 005139          478 VRLADM  483 (712)
Q Consensus       478 ~~la~~  483 (712)
                      ..+..+
T Consensus        85 ~~~~~l   90 (94)
T PF12862_consen   85 SWLANL   90 (94)
T ss_pred             HHHHHH
Confidence            444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.73  E-value=0.88  Score=46.79  Aligned_cols=144  Identities=10%  Similarity=0.021  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH-HHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA-KFAGHM-QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      .+...|.++..++++.+|...|.+..+-.     ...+.. .-+++. .+-.+|+     -+.+...+..+...++..  
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~-----~~~~f~lkeEvl~grilnAff-----l~nld~Me~~l~~l~~~~--   75 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEK-----ESSPFLLKEEVLGGRILNAFF-----LNNLDLMEKQLMELRQQF--   75 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHh-----hcchHHHHHHHHhhHHHHHHH-----HhhHHHHHHHHHHHHHhc--
Confidence            34456899999999999999999887654     222111 101222 2222332     234444445554444443  


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC---CH----HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---SL----EEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~----~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                        |.........|...++.++|.+|++.+..-.........+-   ..    .....-...+.++...|++.++...+.+
T Consensus        76 --~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~  153 (549)
T PF07079_consen   76 --GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNR  153 (549)
T ss_pred             --CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence              34455666778889999999999988765544432222110   00    0011123357788899999999999998


Q ss_pred             HHHHHHh
Q 005139          418 ASMTMIA  424 (712)
Q Consensus       418 al~~~~~  424 (712)
                      .+..+-.
T Consensus       154 i~~~llk  160 (549)
T PF07079_consen  154 IIERLLK  160 (549)
T ss_pred             HHHHHhh
Confidence            8765544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.69  E-value=0.0042  Score=39.26  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          669 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       669 ~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      +.+++++|.+|..+|++++|+ ..|+++|+.+|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEAL-EYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHH-HHHHHHHHHCcC
Confidence            467999999999999999999 999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.69  E-value=0.0044  Score=39.11  Aligned_cols=29  Identities=34%  Similarity=0.353  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .++..+|.++..+|++++|+.+|++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.64  E-value=0.0049  Score=39.58  Aligned_cols=31  Identities=29%  Similarity=0.438  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          602 ALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                      ++..||.+|..+|++++|+.+|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4788999999999999999999999977443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.63  E-value=0.042  Score=54.96  Aligned_cols=133  Identities=11%  Similarity=0.076  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhCCCC
Q 005139          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ  553 (712)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  553 (712)
                      .+|..+.....+.+..+.|..+|.+|+..         ......+|...|.+.+. .++.+.|..+|+.+++.++..   
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~---------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---   69 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD---------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD---   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---
Confidence            35677778888888899999999999732         11234567788888666 567777999999999988765   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-FGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                          ...+......+...++.+.|..+|++++..+      .... ...+|......-...|+.+....+++++.++
T Consensus        70 ----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   70 ----PDFWLEYLDFLIKLNDINNARALFERAISSL------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             ----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                2466666788889999999999999998742      1121 2357778888888999999999999998887

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.61  E-value=0.0051  Score=38.80  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          669 DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       669 ~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      +.+++.+|.++..+|++++|+ +.|+++++.+|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~-~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAI-EYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCcC
Confidence            457899999999999999999 999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.58  E-value=0.0018  Score=40.89  Aligned_cols=33  Identities=30%  Similarity=0.563  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 005139          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (712)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (712)
                      +|++++++        +|..+.+|++||.+|...|++++|+
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            37889998        9999999999999999999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.54  E-value=0.0066  Score=38.95  Aligned_cols=31  Identities=19%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                      ++..||.+|...|+|++|+.+|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999877654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.47  E-value=0.0066  Score=37.96  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          670 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       670 ~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ++++.+|.++.+.|++++|+ ..|+++++.+|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence            46889999999999999999 999999999995

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.42  E-value=0.033  Score=49.79  Aligned_cols=93  Identities=14%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 005139          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL---EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (712)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (712)
                      |+.|.+.++.....         +|..+..+++-|.++..+.++   .++.++++.|+.-+.......+....++..+|.
T Consensus         7 FE~ark~aea~y~~---------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK---------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh---------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45566666666555         455577788888887776544   234444444444333332223333578888999


Q ss_pred             HHHHcC----CHHHHHHHHHHHHHHHHHh
Q 005139          567 MYYMLG----NYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       567 ~~~~~g----~~~~A~~~~~~al~~~~~~  591 (712)
                      +|..++    +..+|..+|++|...++..
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence            888764    4556777777776665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.36  E-value=0.0031  Score=39.80  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (712)
Q Consensus       330 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (712)
                      +|++++++        +|....+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37788888        79999999999999999999999863

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.29  E-value=1.3  Score=47.51  Aligned_cols=222  Identities=15%  Similarity=0.170  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----------HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDI-----------HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~  421 (712)
                      |..||.-....-+++-|.+.|.+...+           .++.+.  .+    --..+|.++...|+|.+|...|.+.   
T Consensus       588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge--~P----~~iLlA~~~Ay~gKF~EAAklFk~~---  658 (1081)
T KOG1538|consen  588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE--TP----NDLLLADVFAYQGKFHEAAKLFKRS---  658 (1081)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC--Cc----hHHHHHHHHHhhhhHHHHHHHHHHc---
Confidence            455555555556666666666554321           111111  11    1235677888888888888887653   


Q ss_pred             HHhCCCChhHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 005139          422 MIANDQDAEVASV-----DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY  496 (712)
Q Consensus       422 ~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  496 (712)
                          +........     .+.+++-+...|..++-..+.++-.+.+....   .|.      .-|.++...|+.++|+..
T Consensus       659 ----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---ePk------aAAEmLiSaGe~~KAi~i  725 (1081)
T KOG1538|consen  659 ----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---EPK------AAAEMLISAGEHVKAIEI  725 (1081)
T ss_pred             ----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---CcH------HHHHHhhcccchhhhhhh
Confidence                221111111     23445555566665555555554444433332   232      235667778888888765


Q ss_pred             H------HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005139          497 C------ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (712)
Q Consensus       497 ~------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (712)
                      .      +-++++.++.     .......+..++..+.....+--|.+.|.+.-.+               ..+..++..
T Consensus       726 ~~d~gW~d~lidI~rkl-----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------------ksiVqlHve  785 (1081)
T KOG1538|consen  726 CGDHGWVDMLIDIARKL-----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------------KSLVQLHVE  785 (1081)
T ss_pred             hhcccHHHHHHHHHhhc-----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------------HHHhhheee
Confidence            3      4455555443     1222344555555555666665665555543221               234456677


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (712)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  627 (712)
                      .++|.+|..+.++           +|.....+++-.|+.+....++++|.+.|.+|-
T Consensus       786 ~~~W~eAFalAe~-----------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  786 TQRWDEAFALAEK-----------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             cccchHhHhhhhh-----------CccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            7888888765544           344445677788888888888888888886653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.28  E-value=1.3  Score=43.43  Aligned_cols=93  Identities=13%  Similarity=-0.053  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139          364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL  443 (712)
Q Consensus       364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  443 (712)
                      ..-...++++.+|+..+.....  ......+...+|..|+..|++++|+.+|+.+...+...+-......++..+..|+.
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~  229 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK  229 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            3455678889999988877664  23344567789999999999999999999998888888888888889999999999


Q ss_pred             HcCCHHHHHHHHHHH
Q 005139          444 SLSRYDEAGFAYQKA  458 (712)
Q Consensus       444 ~~g~~~~A~~~~~~a  458 (712)
                      ..|+.+..+.+.-+.
T Consensus       230 ~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  230 RLGDVEDYLTTSLEL  244 (247)
T ss_pred             HhCCHHHHHHHHHHH
Confidence            999998887766544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.32  Score=47.26  Aligned_cols=136  Identities=19%  Similarity=0.116  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (712)
                      .....+..+......|+ +.+|...+..++...         ++...+...++.+|...|+.+.|...+...-.-.    
T Consensus       133 ~~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----  198 (304)
T COG3118         133 EEEEALAEAKELIEAED-FGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----  198 (304)
T ss_pred             HHHHHHHHhhhhhhccc-hhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----
Confidence            33455667778889987 999999999999876         3335677789999999999999999998643221    


Q ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI  379 (712)
Q Consensus       300 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  379 (712)
                       .......+.+...+..-....++.....    +.+..        +|....+-+.+|..+...|+.+.|.+.+-..+..
T Consensus       199 -~~~~~~~l~a~i~ll~qaa~~~~~~~l~----~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         199 -QDKAAHGLQAQIELLEQAAATPEIQDLQ----RRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             -hhhHHHHHHHHHHHHHHHhcCCCHHHHH----HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             1111100111112222222222222222    22222        6778888999999999999999999988776665


Q ss_pred             HHh
Q 005139          380 HKD  382 (712)
Q Consensus       380 ~~~  382 (712)
                      ...
T Consensus       266 d~~  268 (304)
T COG3118         266 DRG  268 (304)
T ss_pred             ccc
Confidence            433

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=1.6  Score=44.59  Aligned_cols=194  Identities=14%  Similarity=-0.001  Sum_probs=139.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      ....+..+..+.++....++..|..++.+++-.+....  .......++..++.++..-+..-.+..+.-.++.......
T Consensus       270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~--~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~  347 (482)
T KOG4322|consen  270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGC--NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS  347 (482)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence            34556677789999999999999999999876654433  3344566777888888888888888887777777666666


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHH
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY------NRTGKLRESKSYCENA  500 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~a  500 (712)
                      .+...+.+-..++..+...|-.+.|+..+..++....-.++-+..  +.+++..+.++      ....+++.+..++++|
T Consensus       348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr--ara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A  425 (482)
T KOG4322|consen  348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR--ARAIFVFANCTLAFALSCANESLDGFPRYLDLA  425 (482)
T ss_pred             cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc--ceeEEEEEeeeecchhhhhhhhHHhhHHHHHHH
Confidence            677777778889999999999999999999999886655543222  22222111111      2556788888889998


Q ss_pred             HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH---HHHHHHHHHHHHH
Q 005139          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE---QAIKLLQKALKIY  547 (712)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~  547 (712)
                      -.++.+.   +-+..+..+.+.++..|-..|+.+   ++...|+++....
T Consensus       426 ~~~f~kL---~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~l  472 (482)
T KOG4322|consen  426 QSIFYKL---GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYL  472 (482)
T ss_pred             HHHHHHc---cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Confidence            8888774   335567888999999999999865   4555566655443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.19  E-value=2.3  Score=45.56  Aligned_cols=397  Identities=13%  Similarity=0.043  Sum_probs=226.9

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHH
Q 005139          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (712)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~  287 (712)
                      ..+.......|-.-..+...|..-++.|. .+.++..|++++.-+...      .+ . ....++.+--..|+.+.-...
T Consensus        66 ~~y~~fL~kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~S------vd-l-W~~Y~~f~~n~~~d~~~lr~~  136 (577)
T KOG1258|consen   66 EVYDIFLSKYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPLS------VD-L-WLSYLAFLKNNNGDPETLRDL  136 (577)
T ss_pred             HHHHHHHhhCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhH------HH-H-HHHHHHHHhccCCCHHHHHHH
Confidence            45566677889999999999999999996 999999999999876211      11 1 122234444456777887888


Q ss_pred             HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHhCC
Q 005139          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA--HVQALQ  365 (712)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~  365 (712)
                      |++|.......+-. ++     .|...-..-..++++..-...|++.+++-...+    +....-+..+..-  ......
T Consensus       137 fe~A~~~vG~dF~S-~~-----lWdkyie~en~qks~k~v~~iyeRileiP~~~~----~~~f~~f~~~l~~~~~~~l~~  206 (577)
T KOG1258|consen  137 FERAKSYVGLDFLS-DP-----LWDKYIEFENGQKSWKRVANIYERILEIPLHQL----NRHFDRFKQLLNQNEEKILLS  206 (577)
T ss_pred             HHHHHHhcccchhc-cH-----HHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh----HHHHHHHHHHHhcCChhhhcC
Confidence            88888775322111 11     233333334566777777778887777621100    0000000000000  000112


Q ss_pred             HHHHHHHHHHHHH----------------HHHhcCCC-CCHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          366 FSEAQKFCQMALD----------------IHKDNGSP-ASLEEAA-----DRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       366 ~~~A~~~~~~al~----------------~~~~~~~~-~~~~~a~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                      .+++...-.....                .......+ .......     .....-.++.......+.+-.++..+...-
T Consensus       207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpY  286 (577)
T KOG1258|consen  207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPY  286 (577)
T ss_pred             HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence            2222222111110                00000110 0000010     011111122223333333444444332111


Q ss_pred             --hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          424 --ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       424 --~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                        ..+..+.....|......-...|+++...-.|++++--        -......|...+......|+.+-|...+..+.
T Consensus       287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~  358 (577)
T KOG1258|consen  287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARAC  358 (577)
T ss_pred             cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence              11233444555666667777899999999999999876        34456788888998888999999999999999


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (712)
                      ++..+.        ...+...-+.+-...|++..|...+++...-++..       ..+-...+....+.|+.+.+.. +
T Consensus       359 ~i~~k~--------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~~~-~  422 (577)
T KOG1258|consen  359 KIHVKK--------TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDANY-K  422 (577)
T ss_pred             hhcCCC--------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhhhH-H
Confidence            886542        34556667778888999999999999988765332       2233334455667788877774 2


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          582 KNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      ...+.... .+..........+...+.. +.-.++.+.|...+.+++++        .|+....+..+..+....+
T Consensus       423 ~~l~s~~~-~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  423 NELYSSIY-EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHhc-ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence            22222211 1222223334455555543 44567899999999999998        7777666666666555544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.15  E-value=0.67  Score=46.80  Aligned_cols=169  Identities=18%  Similarity=0.125  Sum_probs=114.7

Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML----GQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      ......+++..|...+..+-...           .......++.+|..-    .+..+|..+|..+.+.          .
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g  107 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------G  107 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------c
Confidence            33445678888888888876532           113467777777653    4578888888855433          4


Q ss_pred             HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 005139          349 VGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-------DHEAALEHLVL  417 (712)
Q Consensus       349 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-------~~~~A~~~~~~  417 (712)
                      ...+.+.||.+|..    ..++.+|..+|.++........       ..+...++.+|..-.       +...|+..|.+
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~  180 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK  180 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence            55677889998887    4589999999999987532210       224667777776542       23367888877


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 005139          418 ASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG  488 (712)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  488 (712)
                      +....        ...+...+|.+|..    ..++.+|..+|.++-+.        ..  ......++ ++...|
T Consensus       181 aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         181 AAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence            75321        45677788877755    44889999999999886        22  66777888 666655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.11  E-value=0.012  Score=37.13  Aligned_cols=29  Identities=31%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .++..+|.+|..+|++++|..+|++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            57899999999999999999999999998

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.99  E-value=1.1  Score=45.28  Aligned_cols=183  Identities=20%  Similarity=0.181  Sum_probs=123.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005139          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (712)
                      .....+++..|...+..+..        .........++.+|..    ..+..+|..+|+.+.+          .....+
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~--------~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a  111 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAE--------LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA  111 (292)
T ss_pred             cccccccHHHHHHHHHHhhh--------cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence            33456778888888877642        1112566677777765    3467888888885543          334567


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc-------cHHHHHHHHHHHHH
Q 005139          477 FVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-------ELEQAIKLLQKALK  545 (712)
Q Consensus       477 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~  545 (712)
                      .+.||.+|..    ..++.+|..+|.++...-      ....  ..+...++.+|..-.       +...|..+|.++..
T Consensus       112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g------~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~  183 (292)
T COG0790         112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLG------NVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE  183 (292)
T ss_pred             HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC------ChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence            7889999887    458999999999998872      2121  344677777777642       23368888887766


Q ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC-------
Q 005139          546 IYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-------  614 (712)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-------  614 (712)
                      ..         ...+...+|.+|..    ..++.+|..+|.+|.+.       .+   ...++.++ ++...|       
T Consensus       184 ~~---------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g~g~~~~~  243 (292)
T COG0790         184 LG---------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNGEGVKKAA  243 (292)
T ss_pred             hc---------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcCCCchhhh
Confidence            54         13467788888765    34899999999999874       11   46777788 666555       


Q ss_pred             --------CHHHHHHHHHHHHHH
Q 005139          615 --------SINEAVELFEEARSI  629 (712)
Q Consensus       615 --------~~~~A~~~~~~al~~  629 (712)
                              +...|..++..+...
T Consensus       244 ~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         244 FLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             hcccccCCCHHHHHHHHHHHHHc
Confidence                    666677777666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.97  E-value=0.018  Score=36.22  Aligned_cols=31  Identities=26%  Similarity=0.554  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      .++..+|.+|..+|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999999876

...

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=2.3  Score=43.17  Aligned_cols=144  Identities=12%  Similarity=0.065  Sum_probs=97.7

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH
Q 005139          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (712)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (712)
                      +.+.+ +.+|..+-+..+.-..-.....-+.-.+.+|+.+..+|...|+...-...+...+....-  +. +........
T Consensus       137 ~d~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--rh-d~e~qavLi  212 (493)
T KOG2581|consen  137 IDQKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL--RH-DEEGQAVLI  212 (493)
T ss_pred             HhhHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--cC-cchhHHHHH
Confidence            33454 888888877655443221111222445677888888999999987777777666655321  11 112234456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      +.|-..|...+.|+.|.....++.---    ...+...+..++++|.+...+++|..|.+++-+|+...++.
T Consensus       213 N~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  213 NLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            777888999999999888777654110    01123678889999999999999999999999999888763

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.74  E-value=1  Score=46.66  Aligned_cols=162  Identities=14%  Similarity=0.096  Sum_probs=113.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--------------------CCChhHHHHHHHHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--------------------VPPEEIASGLTDVSSIYES  529 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~~~~~~~~~~~~la~~~~~  529 (712)
                      +|..+.++..++.++..+|+...|.+++++|+-.++..+..                    ..+.....++......+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            78889999999999999999999999999998776633210                    1122345566777788889


Q ss_pred             cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 005139          530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (712)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~  609 (712)
                      .|-+..|.++.+-.+.+.+..  ++   ..++..+-....+.++|+--+++++.........   .-..+....+.++.+
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA  187 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALA  187 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHH
Confidence            999999999999998886642  11   1344555566667788877777777654421000   000112355667788


Q ss_pred             HHHhCCH---------------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005139          610 CVQRYSI---------------NEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (712)
Q Consensus       610 ~~~~g~~---------------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  647 (712)
                      +...++.               +.|...+.+|+..        +|.....+..
T Consensus       188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~--------fP~vl~~Ll~  232 (360)
T PF04910_consen  188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR--------FPWVLVPLLD  232 (360)
T ss_pred             HHHhcCccccccccccccccchhHHHHHHHHHHHH--------hHHHHHHHHH
Confidence            8888887               8999999999998        7766554433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.71  E-value=3.7  Score=44.06  Aligned_cols=376  Identities=10%  Similarity=-0.038  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH-MQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      |.....+...|..-.+.|..+.+...|++++.-.     +-.    +..| ..++.+-...|+.+.-...|++|+.... 
T Consensus        76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p~S----vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG-  145 (577)
T KOG1258|consen   76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----PLS----VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVG-  145 (577)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----hhH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc-
Confidence            5556666777888899999999999999998765     211    1122 2233333456777777777777777632 


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH------cCCHHHHHHH
Q 005139          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET------KGDHEAALEH  414 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~------~g~~~~A~~~  414 (712)
                         . +-.....|-..-..-..++++..-...|++.+++-.....        .++..=.-+..      .-..+++...
T Consensus       146 ---~-dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--------~~f~~f~~~l~~~~~~~l~~~d~~~~l  213 (577)
T KOG1258|consen  146 ---L-DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--------RHFDRFKQLLNQNEEKILLSIDELIQL  213 (577)
T ss_pred             ---c-chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--------HHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence               2 2222334444444446677888888888888876432211        11110000000      1111111111


Q ss_pred             HHHHHHHHHhCCCChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005139          415 LVLASMTMIANDQDAEVASVD-CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (712)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (712)
                      -...... ............+ ..+-.+-...+.++++...+.+...+                  .=.++...-...+.
T Consensus       214 ~~~~~~~-~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  214 RSDVAER-SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK  274 (577)
T ss_pred             hhhHHhh-hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence            1100000 0000000000000 00000000111222222222222221                  11223333444555


Q ss_pred             HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005139          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (712)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (712)
                      +..++..+...-... ....+.....|......-...|+++...-.|++++--+...       ...|...+......|+
T Consensus       275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD  346 (577)
T ss_pred             HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence            555665554322211 11223345567777777888999999999999998766544       2577788888888899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005139          574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (712)
Q Consensus       574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  653 (712)
                      ..-|...+..+.++...    ..+   .+...-+......|++..|...+++...-        -|....+-..-+....
T Consensus       347 ~~~~~~~~~~~~~i~~k----~~~---~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~  411 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVK----KTP---IIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER  411 (577)
T ss_pred             hhHHHHHHHhhhhhcCC----CCc---HHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence            99998888888776422    222   45555677788889999999999987765        4666665555555555


Q ss_pred             Hccchhh------------hCCCChhH-HHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhccc
Q 005139          654 AIGREEK------------LGTANPDV-DDEKRRLAELLKE-AGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       654 ~~g~~~~------------l~~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ..|+...            -+..++.. ...+...+..... .++.+.|. ..+.++++..|.
T Consensus       412 r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~  473 (577)
T KOG1258|consen  412 RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPD  473 (577)
T ss_pred             HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCc
Confidence            6665111            11223322 2234444544443 56777777 888888877764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.67  Score=45.11  Aligned_cols=167  Identities=14%  Similarity=0.022  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc
Q 005139          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST  556 (712)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (712)
                      -..-+.-....|++.+|...|..++....+         ...+...++.+|...|+.+.|...+...-.-....      
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~------  201 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE---------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK------  201 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcc---------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh------
Confidence            344556677889999999999999998433         46778899999999999999988776432111110      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                      ....+.....++.+.....+...+-.++-.      +   +....+-+.+|..+...|+.++|++.+-..+.   +-.+.
T Consensus       202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa------d---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~---~d~~~  269 (304)
T COG3118         202 AAHGLQAQIELLEQAAATPEIQDLQRRLAA------D---PDDVEAALALADQLHLVGRNEAALEHLLALLR---RDRGF  269 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcccc
Confidence            001111112233333333332222222211      1   22236778899999999999999887765444   44443


Q ss_pred             CChhhHHHHHHHHHHHHHccchhhhCCCChhHHHHHHHHHHHH
Q 005139          637 YHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELL  679 (712)
Q Consensus       637 ~~p~~~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la~~~  679 (712)
                      .+..   +...|-.++.      .+++.+|........|+.++
T Consensus       270 ~d~~---~Rk~lle~f~------~~g~~Dp~~~~~RRkL~slL  303 (304)
T COG3118         270 EDGE---ARKTLLELFE------AFGPADPLVLAYRRKLYSLL  303 (304)
T ss_pred             cCcH---HHHHHHHHHH------hcCCCCHHHHHHHHHHHHhh
Confidence            3333   3334444443      34467776666666666554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.43  E-value=2.9  Score=40.91  Aligned_cols=92  Identities=20%  Similarity=0.258  Sum_probs=73.1

Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 005139          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (712)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~  610 (712)
                      ......+.++.+|+..+... +.......+...+|..|+..|++++|..+|+.+...+++-+-  ......++..+..|+
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~-~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW--~~l~~~~l~~l~~Ca  228 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKY-GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW--WSLLTEVLWRLLECA  228 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHH
Confidence            34556788999999988876 556666677889999999999999999999999877765432  344567888889999


Q ss_pred             HHhCCHHHHHHHHHH
Q 005139          611 VQRYSINEAVELFEE  625 (712)
Q Consensus       611 ~~~g~~~~A~~~~~~  625 (712)
                      ...|+.+..+.+.-+
T Consensus       229 ~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  229 KRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHhCCHHHHHHHHHH
Confidence            999998887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.34  E-value=0.83  Score=47.30  Aligned_cols=162  Identities=14%  Similarity=-0.017  Sum_probs=116.7

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC--------------------CCCHHHHHHHH
Q 005139          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANG--------------------KPSLELVMCLH  269 (712)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~--------------------~~~~~~~~~l~  269 (712)
                      +......+|-....|++++.++..+|+ +..|.++.++||-.++.....                    ..+.....+++
T Consensus        29 l~~ll~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~  107 (360)
T PF04910_consen   29 LINLLQKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF  107 (360)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence            344557889999999999999999997 999999999999888743210                    11133455677


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      .....+.+.|-+..|.++.+-.+.+.     +. +|..   +++.+-....+.++|+--+.+++.......+.   ....
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~  176 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSL  176 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhh
Confidence            77888899999999999999999987     44 5443   35666666677788887777777655421100   0001


Q ss_pred             HHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHhc
Q 005139          349 VGETCRYLAEAHVQALQF---------------SEAQKFCQMALDIHKDN  383 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~  383 (712)
                      .....+.++.+++..++-               +.|...+.+|+..+|..
T Consensus       177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            224556677788888887               89999999999888653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=3.4  Score=40.78  Aligned_cols=134  Identities=16%  Similarity=0.152  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005139          324 LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE  403 (712)
Q Consensus       324 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~  403 (712)
                      -++-++-+.+.++-..+.+|  ......++.+.|..|.+.|+-+.|.+.+.+..+..-..+.  ..........+|.+|.
T Consensus        80 neeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~--kiDVvf~~iRlglfy~  155 (393)
T KOG0687|consen   80 NEEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH--KIDVVFYKIRLGLFYL  155 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc--chhhHHHHHHHHHhhc
Confidence            34445556666655555433  2567889999999999999999999999988876655543  2444445556676664


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT  464 (712)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  464 (712)
                         +.+---+.+++|-.+++.+++....-..-...|.......+|.+|..+|-.++..+..
T Consensus       156 ---D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  156 ---DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             ---cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence               4555555666676777777876666566566677777888899998888887765443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=4  Score=41.55  Aligned_cols=142  Identities=17%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          361 VQALQFSEAQKFCQMALDIHKDNG-SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       361 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      +...++.+|.++-...+.-..... ..-+...+.+|+.+..+|...|+...-...+..-+.......+....+...+.+-
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL  216 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL  216 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence            345778888877766554322111 1122345678889999999999988877777777766666667777888888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ..|...+.|+.|.....++.--  ..  ..+...++.++.+|.+..-+++|..|.++|.+|+.....
T Consensus       217 r~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            9999999999998877665311  00  013467888999999999999999999999999988543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.12  E-value=4.8  Score=41.68  Aligned_cols=135  Identities=15%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH--HHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK--LLQKALKI  546 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~  546 (712)
                      ....+.-+..-|.-+++.|. -++|+.+++.+++...-      +.   .+ .+....+ -...|.+|+.  .+.+.+.+
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y------D~---ec-~n~v~~f-vKq~Y~qaLs~~~~~rLlkL  443 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY------DI---EC-ENIVFLF-VKQAYKQALSMHAIPRLLKL  443 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc------cH---HH-HHHHHHH-HHHHHHHHHhhhhHHHHHHH
Confidence            44455666677778888887 77888888888876311      11   11 1111111 1223344332  12222222


Q ss_pred             ---HHhCCCCCC---cHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHH
Q 005139          547 ---YNDAPGQQS---TVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (712)
Q Consensus       547 ---~~~~~~~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  618 (712)
                         ..+. |..+   .-..+-+.|  |..++.+|+|.++.-+-.=..++.       |  ...++..+|.+.....+|++
T Consensus       444 e~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia-------P--S~~~~RLlGl~l~e~k~Y~e  513 (549)
T PF07079_consen  444 EDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA-------P--SPQAYRLLGLCLMENKRYQE  513 (549)
T ss_pred             HHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-------C--cHHHHHHHHHHHHHHhhHHH
Confidence               2222 3322   122233333  456778999999988776666552       2  23789999999999999999


Q ss_pred             HHHHHHH
Q 005139          619 AVELFEE  625 (712)
Q Consensus       619 A~~~~~~  625 (712)
                      |..++..
T Consensus       514 A~~~l~~  520 (549)
T PF07079_consen  514 AWEYLQK  520 (549)
T ss_pred             HHHHHHh
Confidence            9988765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=4.9  Score=41.25  Aligned_cols=181  Identities=15%  Similarity=0.130  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      -...+......+.++....++..|..++++..-.+.+   +........++..++.++.+-+..-.+..+.-.++....+
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            4445667778999999999999999999998877655   4445567778888888888888888888888777777665


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF-----FGVALNQMGLACVQRYSINEAVELFE  624 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~  624 (712)
                      . ..+...+..-..++..+...|..+.|+..+..++......|.-....     .+.++..-+..+ ...+.+.+.++++
T Consensus       346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~  423 (482)
T KOG4322|consen  346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD  423 (482)
T ss_pred             h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence            4 44444455566788899999999999999999998765544322110     111111112222 4456777888888


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       625 ~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +|-.++.++.-  |....++.+-.|..|...|+
T Consensus       424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd  454 (482)
T KOG4322|consen  424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGD  454 (482)
T ss_pred             HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcC
Confidence            88887776633  66677777888888877776

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.00  E-value=0.012  Score=57.55  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      +.-.+..|.++.|+++|..++.+        +|..+..+...+.++..+++...|+.-|..++.+         +++.+.
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---------n~Dsa~  183 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---------NPDSAK  183 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc---------Cccccc
Confidence            33445678899999999999998        8999999999999999999999999999999998         566677


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                      .|-..+.....+|+|++|..++..+.++.
T Consensus       184 ~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  184 GYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             ccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            88889999999999999999999998763

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.98  E-value=0.055  Score=33.62  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          602 ALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +++.+|.++...|++++|+..|++.+..
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999987

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.90  E-value=0.02  Score=58.98  Aligned_cols=97  Identities=16%  Similarity=0.140  Sum_probs=83.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                      +-+.-++.-++|+.|+..|.+|+++        +|..+..+.+.+..+.+.+++..|+.-+.+|+++         .|..
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---------dP~~   71 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---------DPTY   71 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc---------Cchh
Confidence            4456677788999999999999998        8888888888999999999999999999999988         5667


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ..+|+..|.+....+++.+|+..|+....+.+..
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd  105 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND  105 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence            8889999999999999999999998888776654

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.78  E-value=3.3  Score=44.07  Aligned_cols=178  Identities=15%  Similarity=0.048  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhc
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY-------DEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~  466 (712)
                      ....||..++..|+|+-|...|+.+..-+.........+.++-..|.+.+..+..       +....+++.|+..+....
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            4678999999999999999999998876665555556666777777777776643       477788888888877732


Q ss_pred             CC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cCCCCCCChhHHHHHHHHHHHH--HHcccHHHHHHHH
Q 005139          467 GE---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE-KPVPGVPPEEIASGLTDVSSIY--ESMNELEQAIKLL  540 (712)
Q Consensus       467 ~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~  540 (712)
                      .+   .......+....+.++...|.+.+|...+-+.....- +..   ..-..+..+..+|.+|  .....        
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l---~~~~~alllE~~a~~~~~~~~~~--------  358 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL---RPFGSALLLEQAAYCYASLRSNR--------  358 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh---hhHhhHHHHHHHHHhhcccccCC--------
Confidence            11   1235566777788888889998888777666655421 100   0001334444555555  11100        


Q ss_pred             HHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          541 QKALKIYNDAPGQ--QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       541 ~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                              ...+.  ....+.-+..-|.-|...|+...|..+|.+|+.++..
T Consensus       359 --------~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  359 --------PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             --------CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence                    00000  0111222334577889999999999999999998763

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.67  E-value=7.8  Score=41.90  Aligned_cols=106  Identities=15%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhc
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  300 (712)
                      ..++.+.|..+++..+ |..++++|...+..+..   ..-+...+.....|+.||..+.+.+.|.+++++|-+..     
T Consensus       354 H~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~---D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIIS---DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----  424 (872)
T ss_pred             HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----
Confidence            3466677888888876 99999999999877622   22235568888999999999999999999999998765     


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  339 (712)
                      +..+..    -..+-.+....|.-++|+...........
T Consensus       425 ~~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  425 RQSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             cccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            334332    34455666778889999998888776643

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.60  E-value=0.049  Score=56.18  Aligned_cols=115  Identities=13%  Similarity=0.133  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (712)
                      +-.-+.-.+.-+.|+.|+..|.+|+++.++.       +..+.+.+.++.+.+++..|+.-+.+|+++        .+..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc-------a~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC-------AIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcc-------eeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            4455667778889999999999999987655       235556778899999999999999999986        3556


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      ..+|..-|.++...+.+.+|+..|+....+        .|+...+...+..|-....+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999998888        77777777777666544333

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.53  E-value=3  Score=44.34  Aligned_cols=181  Identities=12%  Similarity=0.015  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHH
Q 005139          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-------SDSYDSFKNAISKLRA  590 (712)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~  590 (712)
                      .....||.+++..++|+-|...|+.+..-+... ......+.++...|.+++..+..       ++...+++.|+..+..
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            346789999999999999999999988866543 22334555666667777766643       4777888888888877


Q ss_pred             hCC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHH--HHccchhhhCCC
Q 005139          591 IGE---RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTY--DAIGREEKLGTA  664 (712)
Q Consensus       591 ~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~p~~~~~~~~La~~~--~~~g~~~~l~~~  664 (712)
                      ...   ..+.....+....+.++...|.+.+|...+-+..... .+.+++  -..+-.+..+|.+|  .........+..
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~~~r  365 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPGLTR  365 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCccchh
Confidence            321   1122344577777888889999888887766655442 111110  01556777788888  322110000011


Q ss_pred             ChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          665 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       665 ~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ....+--+..-|.-|.++|+...|. ..|..++..+..
T Consensus       366 ~RK~af~~vLAg~~~~~~~~~~~a~-rcy~~a~~vY~~  402 (414)
T PF12739_consen  366 FRKYAFHMVLAGHRYSKAGQKKHAL-RCYKQALQVYEG  402 (414)
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHhCC
Confidence            2233334445578899999999999 999999887654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.52  E-value=0.03  Score=55.01  Aligned_cols=91  Identities=15%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005139          399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (712)
Q Consensus       399 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (712)
                      +.-.+..|.++.|+++|..++      ...+..+..|...+.++..+++...|+.-+..++.+        +++.+.-|-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai------~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk  186 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAI------ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK  186 (377)
T ss_pred             HHHHhcCcchhhhhccccccc------ccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence            444556788999999999998      578888999999999999999999999999999999        888888999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          479 RLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ..+.....+|++.+|...+..+.++
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhc
Confidence            9999999999999999999999887

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.22  E-value=6.2  Score=38.87  Aligned_cols=218  Identities=15%  Similarity=0.127  Sum_probs=116.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005139          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (712)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (712)
                      .+++|++|++.+...                    +..+.+.|++..|.++..-.++.+.+...   +.......+++.+
T Consensus         2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~~l   58 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLIEL   58 (260)
T ss_dssp             HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence            456777777766554                    34455566666666666555555555432   2222233455555


Q ss_pred             HHHcCCHH-HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH-----------HHHHHhCC
Q 005139          484 YNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA-----------LKIYNDAP  551 (712)
Q Consensus       484 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~  551 (712)
                      +...+.-+ +-..+..++++....   +......+..+..+|..|.+.|++.+|..+|-..           +...... 
T Consensus        59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-  134 (260)
T PF04190_consen   59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-  134 (260)
T ss_dssp             HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred             HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence            55554332 355667777777622   3334456778999999999999999999887421           1111111 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----------CCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG----------ERKSAFFGVALNQMGLACVQRYSINEAVE  621 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  621 (712)
                      +.+............-|...++...|...+..-++.+....          ....+.+-.++..  ..-++.++    ..
T Consensus       135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lL--l~t~e~~~----~~  208 (260)
T PF04190_consen  135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLL--LLTCERDN----LP  208 (260)
T ss_dssp             TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHH--HHHHHHT-----HH
T ss_pred             cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHH--HHHHhcCc----HH
Confidence            33333333333444567778999999998888777643321          0112222122221  22233333    45


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       622 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                      .|....+.++..+.. +|.....+..+|..|...
T Consensus       209 ~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi  241 (260)
T PF04190_consen  209 LFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGI  241 (260)
T ss_dssp             HHHHHHHHTHH---H-HHHTHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCC
Confidence            666666655554432 677888888899888864

; PDB: 3LKU_E 2WPV_G.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.22  E-value=0.14  Score=32.96  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            478889999999999999999999999998887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=3.7  Score=39.71  Aligned_cols=134  Identities=15%  Similarity=0.104  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 005139          408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT  487 (712)
Q Consensus       408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  487 (712)
                      -++-++-+.+.++..+..+.......++.++|..|.+.++.+.+.+++.+.+.-....+-  ..+...+...||.+|..+
T Consensus        91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~--KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL--KIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc--chhhHHHHHHHHHhhccH
Confidence            344455555555555544445677888999999999999999999999888776554432  344555666777777655


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .=..+.++.....++   +   |.+....-..-...|.......++.+|-.++...+..+..
T Consensus       169 ~vV~e~lE~~~~~iE---k---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         169 KVVEESLEVADDIIE---K---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHHHHHH---h---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            444444444444443   3   4444444444445566666777888888888777665543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.17  E-value=5.7  Score=40.59  Aligned_cols=147  Identities=14%  Similarity=0.063  Sum_probs=94.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGK------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (712)
                      +|....+|..+.......-.            .+.-+.+|++|++.         +|.....+..+-.+.....+.++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            78888888888776554432            34456677777776         2233344444445555666777777


Q ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------ChHHHHHHHHHH
Q 005139          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK----------SAFFGVALNQMG  607 (712)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~lg  607 (712)
                      +.+++++...+..    ..+...|...-......-.+......|.+++..+.......          ......++..+.
T Consensus        86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~  161 (321)
T PF08424_consen   86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC  161 (321)
T ss_pred             HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence            7777777764332    22222222222222233468899999999999887654332          233456777888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHH
Q 005139          608 LACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ....+.|..+.|+..++-.+++
T Consensus       162 ~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  162 RFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHCCchHHHHHHHHHHHHH
Confidence            8888999999999999999987

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=6.3  Score=38.22  Aligned_cols=135  Identities=10%  Similarity=0.038  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (712)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (712)
                      .-++-++-+.+.++-.+...+  ....+.++.++|..|.+.++.+.+.+++.+.+......+...+...+...+|.+|..
T Consensus        90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence            344556666666655554442  355677899999999999999999999999988777777777777777788888866


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      +.-.++.++.....++.     |.+....-..-...|.......+|.+|-.++-.++..+..
T Consensus       168 ~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         168 RKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            65555555544444443     2223333333344555666677889998888888877654

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.96  E-value=6.1  Score=38.20  Aligned_cols=62  Identities=15%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          574 YSDSYDSFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       574 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      .+.|...|++|+.++.. +.+.+|..++.+++.-.-.|.-.|+.++|+.+.++|++-.-..++
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~  204 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence            47899999999999998 455544444444444334456689999999999999887665544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.92  E-value=6.8  Score=40.07  Aligned_cols=148  Identities=8%  Similarity=0.002  Sum_probs=96.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005139          426 DQDAEVASVDCSIGDTYLSLSR------------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (712)
                      ..+|....++..+....-..-.            .+.-+.+|++|++.        +|.....+..+-.+.....+.++.
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3455555555555544333221            34556677777776        566666666666677777788888


Q ss_pred             HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-----------CcHHHHHH
Q 005139          494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----------STVAGIEA  562 (712)
Q Consensus       494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~  562 (712)
                      ..-+++++.....      .+..-..|...-......-.+......|.+++..........           ..+..++.
T Consensus        85 ~~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~  158 (321)
T PF08424_consen   85 AKKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL  158 (321)
T ss_pred             HHHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            8888888887322      333333333333333334468889999999988776543321           24556677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          563 QMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+.......|..+.|+..++-.+++
T Consensus       159 r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  159 RLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHCCchHHHHHHHHHHHHH
Confidence            8888889999999999999999886

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.80  E-value=1.1  Score=34.03  Aligned_cols=68  Identities=13%  Similarity=0.024  Sum_probs=55.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (712)
                      ..-|.-++...+.++|+..+.+++...   .+.+....++..+..+|...|+|.+++.+...-++++.+..
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344555667788899999999988543   45667888899999999999999999999988888877764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.62  E-value=0.93  Score=37.22  Aligned_cols=102  Identities=15%  Similarity=0.080  Sum_probs=59.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL----SRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      ++.-++..|++-+|++..+..+....   ........+..-|.++..+    .+.+-=..++.-+++.+.+...- .|..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~---~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG---EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc---CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhH
Confidence            35678899999999999998875432   2232234555566666543    34443334444444443332211 6777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +..++.+|.-+...--|+++..-.++++.+
T Consensus        78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            777777776655555555665555555544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.60  E-value=0.82  Score=34.79  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ...-|.-++...+.++|+..+.++++....     .+....++-.+..+|...|+|.+++.+..+-+++.....+|
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            344555567888999999999999987433     56778889999999999999999999998888887766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.54  E-value=4.4  Score=36.19  Aligned_cols=115  Identities=17%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH--HHHHH
Q 005139          571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG--VYSNL  648 (712)
Q Consensus       571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~--~~~~L  648 (712)
                      .+..++|+..|.....    .+-..-+  ..+....|.+..+.|+...|+.+|.++-..      ...|....  +...-
T Consensus        71 ~~k~d~Alaaf~~lek----tg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlra  138 (221)
T COG4649          71 ENKTDDALAAFTDLEK----TGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRA  138 (221)
T ss_pred             cCCchHHHHHHHHHHh----cCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHH
Confidence            4556667666655433    2222222  367888999999999999999999987653      22343332  33334


Q ss_pred             HHHHHHccc--------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005139          649 AGTYDAIGR--------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  698 (712)
Q Consensus       649 a~~~~~~g~--------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~  698 (712)
                      |.++...|-        +...++.+|-...+...||..-.+.|++.+|+ ..|+.+..
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~-~~F~qia~  195 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK-SWFVQIAN  195 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH-HHHHHHHc
Confidence            455555555        23334678888889999999999999999999 99988765

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.43  E-value=11  Score=39.08  Aligned_cols=235  Identities=11%  Similarity=0.076  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      +..+..++.....+...++-+.|+...++++...+        .    ..+.++.+|....+-+.-..+|+++.+...+.
T Consensus       299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--------s----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~  366 (660)
T COG5107         299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--------S----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK  366 (660)
T ss_pred             hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--------c----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence            33455666666667778888999999988886642        1    25678888888888888888888887654432


Q ss_pred             hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~  421 (712)
                      +........         -...|+++...+++-+-....           ..++..+-..-.+..-.+.|...|-++...
T Consensus       367 ys~~~s~~~---------s~~D~N~e~~~Ell~kr~~k~-----------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~  426 (660)
T COG5107         367 YSMGESESA---------SKVDNNFEYSKELLLKRINKL-----------TFVFCVHLNYVLRKRGLEAARKLFIKLRKE  426 (660)
T ss_pred             Hhhhhhhhh---------ccccCCccccHHHHHHHHhhh-----------hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence            211110000         001233422222222211100           112222233333444466677777666421


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       422 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                      - -.+.+.   .+++.+ .-|...|++.-|...|+-.+..        .++........-..+...++-..|..+|+.++
T Consensus       427 ~-~~~h~v---yi~~A~-~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv  493 (660)
T COG5107         427 G-IVGHHV---YIYCAF-IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSV  493 (660)
T ss_pred             C-CCCcce---eeeHHH-HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence            1 011111   111111 2355689999999999888876        55545455555566778899999999999988


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      ....+.       ..-.+|..+-..-..-|+...+..+-++...+.+
T Consensus       494 ~r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         494 ERLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP  533 (660)
T ss_pred             HHHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence            775541       2344555565566666777666666555555544

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.41  E-value=1.7  Score=44.11  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (712)
                      .++..+|..|...|+++.|++.|-++...+..     .......+.++-.+-...|+|..-..+..+|............
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q  225 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence            35889999999999999999999998777644     3567788889989999999999888888887765211000000


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          389 LEEAADRRLMGLICETKGDHEAALEHLVLA  418 (712)
Q Consensus       389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~a  418 (712)
                      ...+.+...-|.+....++|..|..+|-.+
T Consensus       226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            000123444566666677899988888655

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.11  E-value=7.1  Score=38.61  Aligned_cols=127  Identities=16%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 005139          415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK  494 (712)
Q Consensus       415 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  494 (712)
                      +.+.++-...+........++.+.|..|.+.|+-+.|++.+.+..+.....+-  .-+.......+|.+|...   +--.
T Consensus        87 ld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~--kiDVvf~~iRlglfy~D~---~lV~  161 (393)
T KOG0687|consen   87 LDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH--KIDVVFYKIRLGLFYLDH---DLVT  161 (393)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc--chhhHHHHHHHHHhhccH---HHHH
Confidence            33333333333345567788899999999999999999999888776554431  345566667777777554   3344


Q ss_pred             HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      +..++|-.++++   |.+....-..-..-|.......++.+|-.+|-.++..+..
T Consensus       162 ~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  162 ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            445555555555   5444444444445566666777888888888777665443

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=93.11  E-value=6  Score=48.35  Aligned_cols=223  Identities=12%  Similarity=0.023  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---------------------
Q 005139          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---------------------  531 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------  531 (712)
                      ..+....+|.++...|++.+|+..|.+|+.+.+.   ..++-+.+.++-.++.+..-.+                     
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~---~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~  317 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS---SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS  317 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh---cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence            4567778899999999999999999999999887   4455556666665554432110                     


Q ss_pred             ------------------------------------------cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005139          532 ------------------------------------------ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (712)
Q Consensus       532 ------------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (712)
                                                                .+++|+.+|.++.....+. -...-..++...++.++.
T Consensus       318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~-~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY-VPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc-CcchHHHHHHHHHHHHHH
Confidence                                                      1334444444443222211 122234456667777777


Q ss_pred             HcC--------------------CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          570 MLG--------------------NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       570 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ...                    .-.++..++.+++.+.-.  .-....-..++..+|.+|...|-..++.-+++.++..
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~--~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK--DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh--hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            777                    678888888888876432  2223345678999999999999988888888888776


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHccchhhhCCC--------Chh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139          630 LEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTA--------NPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  700 (712)
Q Consensus       630 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~~~--------~p~-~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~  700 (712)
                      +-......++.....+..+...|.-..+.......        -+. -...+..+-.+-.+.|++..+. ++.-.+|...
T Consensus       475 ~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~-~~~~~LL~~~  553 (1185)
T PF08626_consen  475 LVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVL-RFSSLLLRTY  553 (1185)
T ss_pred             hccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHH
Confidence            53322211233333444444444432221111000        111 1245566667777889999888 7777777665


Q ss_pred             cc
Q 005139          701 SR  702 (712)
Q Consensus       701 p~  702 (712)
                      ..
T Consensus       554 ~~  555 (1185)
T PF08626_consen  554 SP  555 (1185)
T ss_pred             hh
Confidence            44

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.04  E-value=6.4  Score=35.24  Aligned_cols=150  Identities=14%  Similarity=0.113  Sum_probs=94.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      |..|+..+.-.++-..|..+|++..                       .++.++|+..|...-+.--.     ..  -..
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~lektg~g-----~Y--pvL   95 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDLEKTGYG-----SY--PVL   95 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHHHhcCCC-----cc--hHH
Confidence            4455666666666666666666533                       34556666666554433111     12  245


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (712)
                      +....+.+....|+...|+.+|.++-...+.   +....-.+...-+.++...|-|+.-..       ..+.+..+..+.
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~m  165 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNPM  165 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCChh
Confidence            6677888899999999999999876543211   111111223345666777787765443       333344445566


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          599 FGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                      ...+...||..-++.|++.+|..+|.+...
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            677888999999999999999999998765

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.99  E-value=0.22  Score=52.50  Aligned_cols=97  Identities=22%  Similarity=0.273  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE  302 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  302 (712)
                      .+...|.+|...| |...|+.++..|+....        .+....+.+||.+...-|-..+|-.++.+++.+.     ..
T Consensus       609 ~ln~aglywr~~g-n~~~a~~cl~~a~~~~p--------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-----~s  674 (886)
T KOG4507|consen  609 ILNEAGLYWRAVG-NSTFAIACLQRALNLAP--------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-----SS  674 (886)
T ss_pred             EeecccceeeecC-CcHHHHHHHHHHhccCh--------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-----cc
Confidence            3444455555556 59999999999986432        2223456778999999999999999999999886     33


Q ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (712)
Q Consensus       303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  337 (712)
                      .|.    .++.+|..|..+.+.+.|++.|++|++.
T Consensus       675 epl----~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  675 EPL----TFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             Cch----HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            343    3788999999999999999999999988

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.85  E-value=9.7  Score=36.85  Aligned_cols=180  Identities=13%  Similarity=0.055  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV-QALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      +..+|.+....|+|++.+.+..+++....       .....-...++.+|- ..|....+...+..........+.   .
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~-------eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~---~   73 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP-------ELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN---E   73 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---H
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch---h
Confidence            56789999999999999999999988721       112222333333332 233344444444433333222211   1


Q ss_pred             HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 005139          390 EEAADRRLMGLICETKGDH-EAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSL-----S-----RYDEAGF  453 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~  453 (712)
                      .    .  ...+-...... ++-...+...+.++..     ..+....+..+-..|..|...     |     -.+.|..
T Consensus        74 ~----~--~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~  147 (236)
T PF00244_consen   74 K----Q--VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE  147 (236)
T ss_dssp             H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence            0    0  00110001111 1112223333333221     111122222333345444321     1     2378999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhc
Q 005139          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  506 (712)
                      .|++|+.++.....+.+|.......+.+..|+. .|+.++|+.+.++|+.....
T Consensus       148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999997788899888888888877654 89999999998888876543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.73  E-value=11  Score=37.14  Aligned_cols=145  Identities=16%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhCCCCCCcHHH
Q 005139          481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAG  559 (712)
Q Consensus       481 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~  559 (712)
                      +..+.+.|++..|.++..-.++.+.+..   ... .......++.++...+.-+ +-..+..+|++.. ...+.......
T Consensus        17 a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~-~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~   91 (260)
T PF04190_consen   17 ALILLKHGQYGSGADLALLLIEVYEKSE---DPV-DEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPE   91 (260)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHTT-------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HH
T ss_pred             HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCC-CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHH
Confidence            3444555555555555555555554421   111 1222345555555544322 3455667777766 43344456667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          560 IEAQMGVMYYMLGNYSDSYDSFKNA-----------ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                      .+..+|..|++.|++.+|..+|-..           +......+.....  .......-.-|...++...|...+....+
T Consensus        92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--dlfi~RaVL~yL~l~n~~~A~~~~~~f~~  169 (260)
T PF04190_consen   92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--DLFIARAVLQYLCLGNLRDANELFDTFTS  169 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            8889999999999999999887321           1111122222222  23333344567778999999998888877


Q ss_pred             HHHH
Q 005139          629 ILEQ  632 (712)
Q Consensus       629 ~~~~  632 (712)
                      .+..
T Consensus       170 ~~~~  173 (260)
T PF04190_consen  170 KLIE  173 (260)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6433

; PDB: 3LKU_E 2WPV_G.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.60  E-value=5.2  Score=37.01  Aligned_cols=85  Identities=12%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005139          400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (712)
Q Consensus       400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (712)
                      ..++.+-.-+.|+..|.++-     .......+...+.+|..|. ..+.++|+.++.+++++....    +...+.++..
T Consensus       114 Yy~Wsr~~d~~A~~~fL~~E-----~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~----~~~n~eil~s  183 (203)
T PF11207_consen  114 YYHWSRFGDQEALRRFLQLE-----GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD----DNFNPEILKS  183 (203)
T ss_pred             HHHhhccCcHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC----CCCCHHHHHH
Confidence            33445545567777776552     1222345677788887766 678999999999999985432    2445788999


Q ss_pred             HHHHHHHcCCHHHHH
Q 005139          480 LADMYNRTGKLRESK  494 (712)
Q Consensus       480 la~~~~~~g~~~~A~  494 (712)
                      |+.++..+|+++.|-
T Consensus       184 Las~~~~~~~~e~AY  198 (203)
T PF11207_consen  184 LASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHhcchhhhh
Confidence            999999999999874

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.47  E-value=0.3  Score=34.30  Aligned_cols=32  Identities=19%  Similarity=0.128  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          670 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       670 ~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ++++.+|..+.+.|+|.+|. +..+.+|+..|+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~-~~~~~lL~~eP~   33 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKAR-RYCDALLEIEPD   33 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHH-HHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence            57889999999999999999 999999999996

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.44  E-value=27  Score=40.97  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-------CHhHHHHHHHHhhchhhhhhc
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG-------QYNEAIPVLEQSIEIPVIEEG  300 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~  300 (712)
                      -.+++.... |++|+..|++...-+.      ...+-..+.+.+|.....+-       .+++|+.-|++...-      
T Consensus       482 ~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  548 (932)
T PRK13184        482 PDAFLAEKL-YDQALIFYRRIRESFP------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------  548 (932)
T ss_pred             cHHHHhhHH-HHHHHHHHHHHhhcCC------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------
Confidence            334444443 6666666666554431      11233556777777776542       245555555443321      


Q ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          301 QEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       301 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      +.-|..    |...|.+|..+|+|++-+++|.-|++.+.+
T Consensus       549 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        549 VGAPLE----YLGKALVYQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             CCCchH----HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            333333    888899999999999999999999988644

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.40  E-value=0.93  Score=31.87  Aligned_cols=43  Identities=14%  Similarity=0.030  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  651 (712)
                      ..++.+|..+.+.|+|++|..+.+.++++        .|++..+..-...+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHHHHH
Confidence            46788999999999999999999999999        88877765544433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.35  E-value=1.3  Score=36.31  Aligned_cols=101  Identities=10%  Similarity=0.088  Sum_probs=57.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      +|.-++..|++-+|+++.+..+.....     .......+..-|.++..+    .+.+-=..++.-+++-+.+.  ..-.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a--~~Ls   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA--VELS   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH--hccC
Confidence            466788999999999999998876322     222224555566666543    34433333444444433332  1114


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                      |..+..++.+|.-+-..-.|+++..-.++++.
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            44566666666655555555666555555554

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=92.24  E-value=22  Score=43.66  Aligned_cols=231  Identities=13%  Similarity=0.057  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC----C--------------------
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS----R--------------------  447 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~--------------------  447 (712)
                      ++....+|.++...|++.+|+.+|..|+...+..+|....+.++-.++.+....+    +                    
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~  321 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS  321 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence            4466789999999999999999999999999999888888777766654433211    0                    


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHHHHcC--
Q 005139          448 --------------------------------YDEAGFAYQKALTAFKTNK---GENHP--AVASVFVRLADMYNRTG--  488 (712)
Q Consensus       448 --------------------------------~~~A~~~~~~al~~~~~~~---~~~~~--~~~~~~~~la~~~~~~g--  488 (712)
                                                      ...-...+++++.++.+..   .+..|  -...+...++.++....  
T Consensus       322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~  401 (1185)
T PF08626_consen  322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS  401 (1185)
T ss_pred             CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence                                            1111234455555555442   11122  24566777777777777  


Q ss_pred             ------------------CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          489 ------------------KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       489 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                                        .-.++..++.+++.+....   -...+....+..+|.+|...|-..++.-+++.++...-..
T Consensus       402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~---l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~  478 (1185)
T PF08626_consen  402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD---LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPG  478 (1185)
T ss_pred             cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh---CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccc
Confidence                              6778888888888765432   2355678899999999999999988888888877766432


Q ss_pred             CCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          551 PGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER--KSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (712)
Q Consensus       551 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  627 (712)
                      .... ..+...+..+...|--..+.+.-.   ..     ...+..  .+..-..++..+-.+....+++..+..+.-..+
T Consensus       479 l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~---~~-----~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL  550 (1185)
T PF08626_consen  479 LIHWHQSYRSLLEELCKGYGISLDPESSS---ED-----SSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLL  550 (1185)
T ss_pred             cCCcchHHHHHHHHHhccCcccCCccccc---cc-----cccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            2111 111122222222222211111000   00     000000  111222455555566777888888877776666


Q ss_pred             HHHHHh
Q 005139          628 SILEQE  633 (712)
Q Consensus       628 ~~~~~~  633 (712)
                      ..+-..
T Consensus       551 ~~~~~~  556 (1185)
T PF08626_consen  551 RTYSPL  556 (1185)
T ss_pred             HHHhhh
Confidence            654433

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.20  E-value=2  Score=38.13  Aligned_cols=89  Identities=8%  Similarity=-0.033  Sum_probs=64.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      +......+..+..+-...++.+++...+.-.--+        .|.....-..-|.++...|+|.+|+.+|+....-    
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----   73 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----   73 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence            3345556666777777788888888877766555        7777888888888999999999999888886443    


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcccH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                           .+....+--.++.|+..+|+.
T Consensus        74 -----~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   74 -----APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             -----CCCChHHHHHHHHHHHHcCCh
Confidence                 233445555677777777764

>smart00028 TPR Tetratricopeptide repeats

Probab=92.08  E-value=0.24  Score=29.87  Aligned_cols=32  Identities=13%  Similarity=0.151  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          670 DEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       670 ~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .++..+|.++...|++++|. ..|+.+++.+|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~-~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEAL-EYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence            46789999999999999999 999999988773

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK14707 hypothetical protein; Provisional

Probab=91.95  E-value=42  Score=42.13  Aligned_cols=379  Identities=8%  Similarity=-0.006  Sum_probs=186.3

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      .++.++-.+++|.++..+-.-+..+......... ....-.-..++.++-.++++.+...+-.-++.+...+..  ++..
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~-LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~--d~~L  912 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEPE-LRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD--EPEL  912 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHhcChh-hhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc--CHHH
Confidence            4577777777777666665555555432221111 111111345677888888888877777777777766543  3333


Q ss_pred             HHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          350 GET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       350 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      ...  -..++.++..+.+|.++-.+-.-+..+............+..-..++.++...++|.+.-.+-.-+..+.....+
T Consensus       913 rqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~  992 (2710)
T PRK14707        913 RKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD  992 (2710)
T ss_pred             HhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence            333  355677777777777765555555555544433222222333445677777778877766655555444433333


Q ss_pred             ChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          428 DAEVASV--DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA--SVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       428 ~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      .+..-..  -..++.++..+.+|.++-.+-.-+..+...+..  .+...  .--..++.++....+|.+.-.+-.-+..+
T Consensus       993 ~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aL 1070 (2710)
T PRK14707        993 EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASAL 1070 (2710)
T ss_pred             cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHH
Confidence            3322222  345667777777887666666666666655432  23222  22345666777777776655554444444


Q ss_pred             HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      ..... .+..-..+..-..++.++...-+|-+.-.+-+.++.+......... ........++.++-...+|.....+=.
T Consensus      1071 A~rL~-~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~ 1149 (2710)
T PRK14707       1071 AERLS-DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACES 1149 (2710)
T ss_pred             HHHhh-ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHH
Confidence            43321 0000001122234555555555666655555555555554421111 000111234444444444444333333


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  654 (712)
                      -+..+...+.....-..+..-..++..+-...++.+.-.+-+-++.+........+|........|+.+...
T Consensus      1150 Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa 1221 (2710)
T PRK14707       1150 AIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANA 1221 (2710)
T ss_pred             HHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHH
Confidence            333333332211111011111223333333344444445555555555555555666544444444444333

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.82  E-value=0.51  Score=30.45  Aligned_cols=35  Identities=9%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      .++..||.+-...++|++|+.-|++++.+.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999999999999999999877643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK14707 hypothetical protein; Provisional

Probab=91.75  E-value=44  Score=41.97  Aligned_cols=300  Identities=9%  Similarity=0.034  Sum_probs=161.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET--CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      ..++.++-.+.++..+..+-..+..+...+..  ++.....  -..++.++..+++|.+...+-.-++.+..........
T Consensus       835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~L  912 (2710)
T PRK14707        835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPEL  912 (2710)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHH
Confidence            45777788888888777777777666655422  2333222  2446677777778877766666666666555433223


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV--DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                      ..+..-..++.++....+|.++-.+-.-+..+.......+.....  -..++.++..+++|.+...+-.-+..+...+..
T Consensus       913 rqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~  992 (2710)
T PRK14707        913 RKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD  992 (2710)
T ss_pred             HhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence            333334556777777777776555444444444444444444333  245667777788887776666666666554421


Q ss_pred             CCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          468 ENHPAV--ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       468 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                        .+..  ...-..++.++....+|.++-.+-.-+..+...+. .+..-....--..++.++-...+|.+.-.+-.-+..
T Consensus       993 --~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa-~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~a 1069 (2710)
T PRK14707        993 --EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS-NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASA 1069 (2710)
T ss_pred             --cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHH
Confidence              2221  22233566677777777665555555555554421 110001112223556666666666554444444444


Q ss_pred             HHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCH
Q 005139          546 IYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI  616 (712)
Q Consensus       546 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  616 (712)
                      +......... ..+..-..++.++...-+|.+.-.+-+-++.+...++.........-...++.+.-...++
T Consensus      1070 LA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707       1070 LAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred             HHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence            4333211111 0111123566677777778877777777888877776544333223333344444433333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.65  E-value=4.8  Score=35.76  Aligned_cols=86  Identities=17%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      .+...+..+..+-...++.+++..++.-..-+        .|.....-..-|.++...|++.+|+.+|+....-      
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------   73 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------   73 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence            34455666777777888888888777644332        2334466777899999999999999999997654      


Q ss_pred             CCChhhHHHHHHHHHHHHHccc
Q 005139          636 PYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       636 ~~~p~~~~~~~~La~~~~~~g~  657 (712)
                        .|....+..-+|.|+..+|+
T Consensus        74 --~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   74 --APGFPYAKALLALCLYALGD   93 (160)
T ss_pred             --CCCChHHHHHHHHHHHHcCC
Confidence              77777788889999999998

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=91.34  E-value=6.3  Score=35.49  Aligned_cols=148  Identities=17%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc-
Q 005139          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICE-----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL-  445 (712)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-  445 (712)
                      -|+.|..++..+-+....  +...+.+|..+.     ..+++..|++.+..+-.        .....+..++|.++..- 
T Consensus        50 nF~~A~kv~K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHHhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhhhhhccCc
Confidence            455555555554433221  223444554443     45678889999987752        33455666777776642 


Q ss_pred             ----CC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------------------------HcCCHHHHHH
Q 005139          446 ----SR--YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN------------------------RTGKLRESKS  495 (712)
Q Consensus       446 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~~  495 (712)
                          ++  ..+|++++.++-++          ....+.+.|...|.                        ...+.+.|.+
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q  189 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ  189 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence                23  67888888888665          11233344444333                        3345666766


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhC
Q 005139          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  550 (712)
                      +..+|-++           .++.+..++.+.|..    -.+.++|..+-.+|.++....
T Consensus       190 fa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~  237 (248)
T KOG4014|consen  190 FAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL  237 (248)
T ss_pred             HHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence            66666655           235566777777654    236788888888888887654

>smart00028 TPR Tetratricopeptide repeats

Probab=91.07  E-value=0.4  Score=28.77  Aligned_cols=29  Identities=31%  Similarity=0.411  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .++..+|.++...|++++|..+|++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            46788999999999999999999999876

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.90  E-value=4.9  Score=42.86  Aligned_cols=160  Identities=14%  Similarity=0.009  Sum_probs=86.7

Q ss_pred             HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (712)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (712)
                      .....++++++..+....- +.     +.-|.   .....++..+...|..+.|+.+...             |   ...
T Consensus       270 ~av~~~d~~~v~~~i~~~~-ll-----~~i~~---~~~~~i~~fL~~~G~~e~AL~~~~D-------------~---~~r  324 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASN-LL-----PNIPK---DQGQSIARFLEKKGYPELALQFVTD-------------P---DHR  324 (443)
T ss_dssp             HHHHTT-HHH-----HHHH-TG-----GG--H---HHHHHHHHHHHHTT-HHHHHHHSS--------------H---HHH
T ss_pred             HHHHcCChhhhhhhhhhhh-hc-----ccCCh---hHHHHHHHHHHHCCCHHHHHhhcCC-------------h---HHH
Confidence            3445788888777775211 11     11111   1256778888888888877765433             2   223


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (712)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (712)
                      +.|   ..+.|+++.|.+...+.-       .      ...|..||.....+|+++-|.++|+++-              
T Consensus       325 FeL---Al~lg~L~~A~~~a~~~~-------~------~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------------  374 (443)
T PF04053_consen  325 FEL---ALQLGNLDIALEIAKELD-------D------PEKWKQLGDEALRQGNIELAEECYQKAK--------------  374 (443)
T ss_dssp             HHH---HHHCT-HHHHHHHCCCCS-------T------HHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------
T ss_pred             hHH---HHhcCCHHHHHHHHHhcC-------c------HHHHHHHHHHHHHcCCHHHHHHHHHhhc--------------
Confidence            333   457788888776654321       1      2268899999999999999999998762              


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                      -+..+..+|...|+.+.-.++...|...    +   .      ++..-.+++..|+.++.++++.++-
T Consensus       375 d~~~L~lLy~~~g~~~~L~kl~~~a~~~----~---~------~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  375 DFSGLLLLYSSTGDREKLSKLAKIAEER----G---D------INIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             -HHHHHHHHHHCT-HHHHHHHHHHHHHT----T----------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             CccccHHHHHHhCCHHHHHHHHHHHHHc----c---C------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            1345566777888875544444433322    1   1      1112234455677777776666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=90.78  E-value=4.6  Score=36.37  Aligned_cols=151  Identities=13%  Similarity=0.071  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-
Q 005139          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLS-----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-  487 (712)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  487 (712)
                      .|+.|..++..+-+....+...+.+|..++.     .++...|++.+..+-+.          ..+.+...+|.+++.- 
T Consensus        50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence            3444444555555555666667777766553     45788888888887664          2345666777776642 


Q ss_pred             ----C--CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH------------------------HcccHHHHH
Q 005139          488 ----G--KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------------------------SMNELEQAI  537 (712)
Q Consensus       488 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~  537 (712)
                          +  +..+|+.++.++-.+-           ...+.+.|...|.                        -..+.+.|.
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~  188 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL  188 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence                2  3678888888876651           1223333333333                        334566777


Q ss_pred             HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 005139          538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----GNYSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~  594 (712)
                      ++.-+|.++..         ..+..++.+.|..-    .+.++|..+-.+|.++.+++...
T Consensus       189 qfa~kACel~~---------~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~  240 (248)
T KOG4014|consen  189 QFAIKACELDI---------PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKN  240 (248)
T ss_pred             HHHHHHHhcCC---------hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence            66666655421         23555667766442    46788999999999987766433

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.72  E-value=4.6  Score=41.19  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                      +.+......-.++..+|..|...|+++.|++.|-++-..+..     ....+..+.++-.+-...|+|..-..+..+|..
T Consensus       141 K~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s  215 (466)
T KOG0686|consen  141 KDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAES  215 (466)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence            333334455677889999999999999999999998877654     456678888888888999999888888887776


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (712)
                      ..... ........+.+...-|.+.+.+++|..|.++|-.+.
T Consensus       216 t~~~~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  216 TPDAN-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             Cchhh-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            52000 000000112234444555566668988888876553

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.76  E-value=4.8  Score=41.91  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      ++..|.+++.-+|+|..|++.++.. ++.....-...+...+.+++.+|-+|..+++|.+|++.|...+-...+
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778889999999999998753 333222223334456677999999999999999999999998876544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.48  E-value=2.1  Score=39.51  Aligned_cols=82  Identities=23%  Similarity=0.250  Sum_probs=59.5

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHH
Q 005139          232 ISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGH  311 (712)
Q Consensus       232 ~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  311 (712)
                      -+.|+  +.|...|.++-        +.+..+.+...+.||..|. ..+.++|+.++.+++++...     .......++
T Consensus       118 sr~~d--~~A~~~fL~~E--------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~-----~~~~n~eil  181 (203)
T PF11207_consen  118 SRFGD--QEALRRFLQLE--------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP-----DDNFNPEIL  181 (203)
T ss_pred             hccCc--HHHHHHHHHHc--------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC-----CCCCCHHHH
Confidence            33454  66666655443        4555666788888888776 78899999999999999743     112234569


Q ss_pred             HHHHHHHHHcCCHHHHHH
Q 005139          312 MQLGDTYAMLGQLENSLM  329 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~  329 (712)
                      ..|+.+|..+|+++.|--
T Consensus       182 ~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  182 KSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             HHHHHHHHHhcchhhhhh
Confidence            999999999999998853

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.34  E-value=31  Score=37.22  Aligned_cols=175  Identities=14%  Similarity=0.074  Sum_probs=101.8

Q ss_pred             cCCHhHHHHHHHHhhchhhhh----hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--------
Q 005139          278 LGQYNEAIPVLEQSIEIPVIE----EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET--------  345 (712)
Q Consensus       278 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------  345 (712)
                      ...|++|...|.-+.......    .-..+| ..+..+..++.++..+|+.+.|....++++-.+...+.+.        
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssP-YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSP-YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCC-cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            345777877777766543210    001222 2456799999999999999999999999998877654321        


Q ss_pred             -----Chh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          346 -----DPR---VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       346 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                           .|.   ...+++..-..+...|-+..|.+++.-.+.+.+......      +.+.+-.......+|.=-++.++.
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~------~l~~ID~~ALrareYqwiI~~~~~  403 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG------ILYLIDIYALRAREYQWIIELSNE  403 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence                 122   223344444556678999999999999888876532211      222222333334444433443333


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 005139          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTA  461 (712)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  461 (712)
                      . +........|..... ..+|..|.....   -..|...+.+|+.+
T Consensus       404 ~-e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~  448 (665)
T KOG2422|consen  404 P-ENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH  448 (665)
T ss_pred             H-HhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence            2 111111222332221 244555655554   56788888898887

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.89  E-value=26  Score=34.74  Aligned_cols=107  Identities=14%  Similarity=0.052  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                      ..+.+...||.+|...++|..|-..+.-. ..   ..|.    .......+..+|.+|...++..+|..+..++--+...
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~---~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PL---DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE  176 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-Cc---ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence            46677889999999999999987766422 11   1111    1234456789999999999999999999988554433


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR  627 (712)
Q Consensus       591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  627 (712)
                      .  .++......-...|+++-..++|-+|...|-+..
T Consensus       177 ~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  177 S--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             c--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  2222222333344566667777777776665543

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=88.50  E-value=29  Score=34.79  Aligned_cols=95  Identities=9%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             HHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 005139          526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQ  605 (712)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  605 (712)
                      +....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-..........+ .+-..++.
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY~  161 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFYS  161 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHHH
Confidence            3445668999999999999887765 444566677888999999999999999999999888877766643 23345666


Q ss_pred             HH-HHHHHhCCHHHHHHH
Q 005139          606 MG-LACVQRYSINEAVEL  622 (712)
Q Consensus       606 lg-~~~~~~g~~~~A~~~  622 (712)
                      ++ ..|...|++..+...
T Consensus       162 lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            66 445556777654433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.49  E-value=4.5  Score=32.28  Aligned_cols=68  Identities=24%  Similarity=0.190  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHccchhhhCCCChhHHHHHHHHH
Q 005139          599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT--LGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLA  676 (712)
Q Consensus       599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~--~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la  676 (712)
                      ...+.+.+|..+...|++++|++.+-..+..        +++.  -.+...+-.++.      .++..+|.+......|+
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~--------dr~~~~~~ar~~ll~~f~------~lg~~~plv~~~RRkL~   86 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRR--------DRDYEDDAARKRLLDIFE------LLGPGDPLVSEYRRKLA   86 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTCCCCHHHHHHHHHHH------HH-TT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccccccHHHHHHHHHHH------HcCCCChHHHHHHHHHH
Confidence            4478999999999999999999988887765        3322  234444444443      44578888888888887


Q ss_pred             HHHH
Q 005139          677 ELLK  680 (712)
Q Consensus       677 ~~~~  680 (712)
                      .+++
T Consensus        87 ~lL~   90 (90)
T PF14561_consen   87 SLLF   90 (90)
T ss_dssp             HHH-
T ss_pred             HHhC
Confidence            7653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=88.35  E-value=15  Score=37.87  Aligned_cols=108  Identities=11%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-----H-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-----P-----AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      |..++++++|..|..-|..+|+++.+......     .     -...+...|..||.++++.+-|+....+.+.+     
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-----  257 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-----  257 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence            44556677777777777777777654321111     1     12234557889999999999999999999887     


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (712)
                          +|....-+...|.++..+.+|.+|..-+--+.-++.-..|...
T Consensus       258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q  300 (569)
T PF15015_consen  258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQ  300 (569)
T ss_pred             ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence                5556677888899999999999998888777766665533433

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=88.17  E-value=10  Score=31.70  Aligned_cols=74  Identities=16%  Similarity=0.110  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH-------PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      +..+|...+..+++-.++-+|++|+.+..+....+.       .-.+....+||..+..+|+.+-.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            445677778888888888888888888777632111       1234567899999999999999999998877665544


Q ss_pred             C
Q 005139          508 V  508 (712)
Q Consensus       508 ~  508 (712)
                      .
T Consensus        84 i   84 (140)
T PF10952_consen   84 I   84 (140)
T ss_pred             c
Confidence            3

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=87.96  E-value=13  Score=39.86  Aligned_cols=79  Identities=14%  Similarity=0.065  Sum_probs=56.0

Q ss_pred             CCChhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          426 DQDAEVASVDCSIGDTYLS--LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +.-.....++.+||.+-..  ...-..++.+|.+|+...+..++   ......|..+|..|++.++|.+|+.++-+|-..
T Consensus       271 ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V  347 (618)
T PF05053_consen  271 GHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRSWAEAADV  347 (618)
T ss_dssp             TTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455666666665543  33456789999999999999874   334678889999999999999999999999888


Q ss_pred             HhcC
Q 005139          504 YEKP  507 (712)
Q Consensus       504 ~~~~  507 (712)
                      .+..
T Consensus       348 i~~Y  351 (618)
T PF05053_consen  348 IRKY  351 (618)
T ss_dssp             HTTS
T ss_pred             HHHc
Confidence            7664

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.93  E-value=0.75  Score=26.75  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHH
Q 005139          266 MCLHVIAAIYCSLGQYNEAIPVLEQ  290 (712)
Q Consensus       266 ~~l~~la~~~~~~g~~~~A~~~~~~  290 (712)
                      .++..+|.++...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3567799999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=87.92  E-value=6.6  Score=33.54  Aligned_cols=84  Identities=5%  Similarity=-0.001  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          559 GIEAQMGVMYYMLGNYS---DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       559 ~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      ...+++++++.+..+.+   +.+.+++..+.      ..++...-..++.|+..+.+.++|++++.+....++.      
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~------  100 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET------  100 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhh------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh------
Confidence            56778899988876544   44444444443      1223333467888999999999999999999999998      


Q ss_pred             CCChhhHHHHHHHHHHHHHcc
Q 005139          636 PYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       636 ~~~p~~~~~~~~La~~~~~~g  656 (712)
                        .|++.++..---.+..++.
T Consensus       101 --e~~n~Qa~~Lk~~ied~it  119 (149)
T KOG3364|consen  101 --EPNNRQALELKETIEDKIT  119 (149)
T ss_pred             --CCCcHHHHHHHHHHHHHHh
Confidence              7777666554444444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.83  E-value=9  Score=40.93  Aligned_cols=25  Identities=16%  Similarity=0.162  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                      .|..||.....+|+++-|.++|+++
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            4555555555555555555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.75  E-value=10  Score=38.87  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .+...+..||..+++.+-|+.+..+.+.+        +|....-+...|.++..+.+|.+|-.-+--+.-++--
T Consensus       229 fIetklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl  294 (569)
T PF15015_consen  229 FIETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL  294 (569)
T ss_pred             HHHHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567889999999999999999999988        8888888999999999999999998877766666543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.69  E-value=45  Score=36.05  Aligned_cols=174  Identities=13%  Similarity=0.113  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------
Q 005139          406 GDHEAALEHLVLASMTMIAN------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN----------  469 (712)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------  469 (712)
                      ..|++|...|.-+......+      ...|.....+..++.++..+|+.+-|....+++|-.+.....+.          
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            34556666666555443322      24577788899999999999999999999999988776654221          


Q ss_pred             ---CHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          470 ---HPA---VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       470 ---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                         ++.   ...+++..-..+...|-+..|.+++.-.+.+-..     .+|.  .+.+.+-...++..+|+=-+..++..
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-----eDPl--~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-----EDPL--GILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-----CCch--hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence               222   2333444445567789999999999988887321     1221  12222323333444555444444443


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISKLR  589 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~  589 (712)
                      -.. ... ...+... .-..+|..|.....   -+.|...+.+|+.+..
T Consensus       405 e~~-n~l-~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  405 ENM-NKL-SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             Hhh-ccH-hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            211 111 1111111 12346666666655   5678888888887643

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=87.68  E-value=11  Score=32.42  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                      +.-..-..++++++..+...-.-.+++....+|...+....      .+.++|......     +.....+..|...|..
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~  108 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF  108 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence            55666678899999988663222344555566655554322      677777755443     3344556788899999


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 005139          568 YYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       568 ~~~~g~~~~A~~~~~~al  585 (712)
                      +...|++++|...|+.++
T Consensus       109 le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  109 LEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTT-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhC
Confidence            999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.29  E-value=0.79  Score=26.67  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          601 VALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      .+...+|.++..+|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4677899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.10  E-value=51  Score=36.07  Aligned_cols=106  Identities=17%  Similarity=0.089  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005139          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (712)
Q Consensus       266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (712)
                      ..+.+-|.-.++..+|..++++|...+.....   +............++.||..+.+.+.|.+++++|-+.        
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~---D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------  423 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS---DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------  423 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence            34556688888999999999999999876532   2222233556889999999999999999999999887        


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                      +|...-....+-.+....|.-++|+.++.........
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            5666666666777777889999999999888776544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=87.08  E-value=42  Score=35.06  Aligned_cols=75  Identities=11%  Similarity=0.065  Sum_probs=51.5

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Q 005139          210 VSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLE  289 (712)
Q Consensus       210 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~  289 (712)
                      +.+...++|.+...++.+...+-.++. +++-.+.|++...-       .+-...++.++.-|.+.  ..+|.....+|-
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~p-------fp~~~~aw~ly~s~ELA--~~df~svE~lf~  100 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQES-MDAEREMYEQLSSP-------FPIMEHAWRLYMSGELA--RKDFRSVESLFG  100 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCC-------CccccHHHHHHhcchhh--hhhHHHHHHHHH
Confidence            345667899999999999999988886 88888888876542       22223344444434433  467777788888


Q ss_pred             Hhhch
Q 005139          290 QSIEI  294 (712)
Q Consensus       290 ~al~~  294 (712)
                      +++.-
T Consensus       101 rCL~k  105 (660)
T COG5107         101 RCLKK  105 (660)
T ss_pred             HHHhh
Confidence            77754

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.99  E-value=47  Score=38.96  Aligned_cols=185  Identities=11%  Similarity=0.059  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH------Hccc----HHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE------SMNE----LEQAIKLLQKA  543 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~a  543 (712)
                      ....+.+|.+|...|+..+|+.+|.+|..-..+          ..++..+..-..      ..|+    -..|..||.++
T Consensus       920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge----------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv  989 (1480)
T KOG4521|consen  920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE----------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV  989 (1480)
T ss_pred             HHHHHhhheeeecCCchHHHHHHHHHHhhcccc----------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH
Confidence            455677889999999999999999999875422          112222211110      1222    12345566666


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      +++.+..                     +-.+.+.++.-+|++.   .++. .+..+.....+=.-...+|.+-+|....
T Consensus       990 ~rlle~h---------------------n~~E~vcQlA~~AIe~---l~dd-~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen  990 VRLLEEH---------------------NHAEEVCQLAVKAIEN---LPDD-NPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred             HHHHHHh---------------------ccHHHHHHHHHHHHHh---CCCc-chhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence            5554433                     3334444444444432   2332 2334455555555566666666655433


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccch--------------------hhhCCCCh-hHHHHHHHHHHHHHHh
Q 005139          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRE--------------------EKLGTANP-DVDDEKRRLAELLKEA  682 (712)
Q Consensus       624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~--------------------~~l~~~~p-~~~~~~~~la~~~~~~  682 (712)
                      -+-         ++......++..|-.++...|..                    +..+...| .....|..|-..+...
T Consensus      1045 ~~n---------pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1045 LRN---------PDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred             HcC---------CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence            221         11122334666666666666661                    11111111 1222344444555678


Q ss_pred             ccHHHHHHHHHHHHHHhccc
Q 005139          683 GRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       683 g~~~~A~~~~l~~~l~~~p~  702 (712)
                      +++++|..-.|+.+.....+
T Consensus      1116 hN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred             cchhHHHHHHHHHHHHhccc
Confidence            88888886677776665554

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.93  E-value=8.7  Score=39.53  Aligned_cols=147  Identities=18%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CCChhHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHhCC
Q 005139          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPG--VPPEEIASGLTDVSSIYESMNEL---EQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~  551 (712)
                      ++..|........|++|+.++-.|-+.+....+.  .....++..-..+.+||+.+.+.   ..|..-+..+-+-+...+
T Consensus       166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy  245 (568)
T KOG2561|consen  166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY  245 (568)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence            3444555555566666666555554443321000  00111333444566777766542   345444444444333333


Q ss_pred             CCC------------C---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH------H--
Q 005139          552 GQQ------------S---TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG------L--  608 (712)
Q Consensus       552 ~~~------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg------~--  608 (712)
                      |.+            +   .+...+..-|.+.+++|+-++|.++++.|...+.++.-.+...  ..+..+|      .  
T Consensus       246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~l--sllv~mGfeesdaRla  323 (568)
T KOG2561|consen  246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETL--SLLVGMGFEESDARLA  323 (568)
T ss_pred             hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHH--HHHHHcCCCchHHHHH
Confidence            321            2   2344556779999999999999999999998887765443321  2233332      1  


Q ss_pred             HHHHhCCHHHHHHHHHH
Q 005139          609 ACVQRYSINEAVELFEE  625 (712)
Q Consensus       609 ~~~~~g~~~~A~~~~~~  625 (712)
                      +-.-.|+.+.|.++..+
T Consensus       324 LRsc~g~Vd~AvqfI~e  340 (568)
T KOG2561|consen  324 LRSCNGDVDSAVQFIIE  340 (568)
T ss_pred             HHhccccHHHHHHHHHH
Confidence            11124678888777643

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.40  E-value=40  Score=35.34  Aligned_cols=66  Identities=15%  Similarity=0.027  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                      ......+.-++..++|..|...+.......   .+... .........|..++...++.+|.++++..+.
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRL---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            344556677788999999999999987641   11111 1122233345666789999999999998764

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.23  E-value=38  Score=33.68  Aligned_cols=111  Identities=10%  Similarity=-0.013  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      ..+.+...||.+|-..++|..|-..+.-. .........+.-.....+..+|.+|...++..+|..+..++.-......+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            45677889999999999999887766422 11110111122233557788999999999999999999988654444434


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL  459 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  459 (712)
                      +......-...|+++-..++|-+|...|-+..
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444556777777888877776666543

>PRK10941 hypothetical protein; Provisional

Probab=86.21  E-value=7.5  Score=38.32  Aligned_cols=70  Identities=9%  Similarity=-0.048  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .-....+.++-.+|...++++.|+.+.+..+.+        .|+.+.-+...|.+|.++|.+..|..-++..++.+..
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            345677888899999999999999999999998        7777788888999999999999999999999998644

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.21  E-value=42  Score=35.19  Aligned_cols=65  Identities=12%  Similarity=-0.092  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV  337 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  337 (712)
                      ....+..++..++|..|...|.......     +.............|..++..-++.+|.+.++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl-----~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRL-----PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445667788999999999999887631     1111112222344455667788899999999987765

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.87  E-value=7.4  Score=34.02  Aligned_cols=86  Identities=8%  Similarity=-0.071  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ....+..+...-...++.+++..++...--+        .|.....-..-|.++...|+|.+|+.+|+...+-.      
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~------   74 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA------   74 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC------
Confidence            3444455555555688888888777665555        67777777888889999999999988888765541      


Q ss_pred             CCChhHHHHHHHHHHHHHHcccH
Q 005139          511 VPPEEIASGLTDVSSIYESMNEL  533 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~  533 (712)
                         +..+...-.++.|+..+|+.
T Consensus        75 ---~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        75 ---GAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             ---CCchHHHHHHHHHHHhcCCh
Confidence               12234445567777777664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=85.81  E-value=2.7  Score=35.80  Aligned_cols=61  Identities=18%  Similarity=0.056  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHccc----------hhhhC-CCChh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          641 TLGVYSNLAGTYDAIGR----------EEKLG-TANPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       641 ~~~~~~~La~~~~~~g~----------~~~l~-~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ...+.+++|+++....+          .+.+. ..+|+ ..++++.|+.-+++.|+|+.++ ++++.+|+..|+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~~  103 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEPN  103 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCCC
Confidence            45677888888877666          33333 35554 4578899999999999999999 999999999986

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.80  E-value=12  Score=36.78  Aligned_cols=71  Identities=14%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      .+.++..++..+...|+++.++..+++.+..        +|..-..|..+-..|...|+...|+..|.+.-.......+
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            4456888999999999999999999999988        7888889999999999999999999999998886544433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.79  E-value=69  Score=36.33  Aligned_cols=50  Identities=14%  Similarity=0.009  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005139          244 LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (712)
Q Consensus       244 ~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~  295 (712)
                      +|.-|+.+.+..  ..+......++...|..++..|++++|...|-+.+...
T Consensus       349 ly~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  349 LYKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             hHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            355566666554  33345567788888999999999999999999888663

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=85.69  E-value=83  Score=37.14  Aligned_cols=107  Identities=14%  Similarity=0.086  Sum_probs=72.8

Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (712)
                      ...++.....|+.|+..|++...-.+   |...   -.++.+.+|.+...+-.-..--..|.+|+..+....+  .+...
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  552 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP  552 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence            35666677889999999988766542   1111   2345777887776654333333566666666655432  24445


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      .-|..-|.+|..+|++++-++++.-|++.+++...
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            56777788999999999999999999998877654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=85.27  E-value=1.8  Score=42.08  Aligned_cols=59  Identities=14%  Similarity=0.231  Sum_probs=52.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +.|.-....|+.++|..+|+.|+.+        .|....++..+|.+....++.-+|-.+|-+|+.+
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            3445566789999999999999999        8888899999999999999999999999999988

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.27  E-value=8.4  Score=30.71  Aligned_cols=75  Identities=19%  Similarity=0.127  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                      +..+++.++.        +|....+.+.+|..+...|++++|++.+-.++......       ....+...+-.++...|
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-------~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-------EDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-------CCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------cccHHHHHHHHHHHHcC
Confidence            4455666665        88889999999999999999999999888877664331       01223344555555556


Q ss_pred             cHHHHHHHHH
Q 005139          532 ELEQAIKLLQ  541 (712)
Q Consensus       532 ~~~~A~~~~~  541 (712)
                      .-+.-..-|+
T Consensus        73 ~~~plv~~~R   82 (90)
T PF14561_consen   73 PGDPLVSEYR   82 (90)
T ss_dssp             TT-HHHHHHH
T ss_pred             CCChHHHHHH
Confidence            5443333333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=85.16  E-value=89  Score=37.03  Aligned_cols=64  Identities=22%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHH------HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          480 LADMYNRTGKLRESKSYCENA------LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                      -|.+|...|+.++|+..|..+      +.+..+..  .........-..|+.-+..++++-+|-+.+...+.
T Consensus       958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~--~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen  958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLS--EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            355666677777777766443      33433321  11122232335566666677777777666655543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=85.02  E-value=2  Score=41.82  Aligned_cols=72  Identities=21%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005139          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (712)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~  643 (712)
                      .+.-..+.|+.++|..+|+.|+.+.        +....++..+|......++.-+|-.+|-+|+.+        .|....
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse  185 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE  185 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence            3344557899999999999999872        233478999999999999999999999999998        887777


Q ss_pred             HHHHHHHH
Q 005139          644 VYSNLAGT  651 (712)
Q Consensus       644 ~~~~La~~  651 (712)
                      ++.+.+.+
T Consensus       186 ALvnR~RT  193 (472)
T KOG3824|consen  186 ALVNRART  193 (472)
T ss_pred             HHhhhhcc
Confidence            77776543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.94  E-value=18  Score=35.40  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 005139          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP  639 (712)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  639 (712)
                      .+...+..|...|.+.+|+.+.++++.+        ++.....+..|-.++...|+--.|...|++..+.++..+|-+-.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            4556678899999999999999999886        34555778888899999999999999999999988888886544


Q ss_pred             hhHH
Q 005139          640 DTLG  643 (712)
Q Consensus       640 ~~~~  643 (712)
                      +...
T Consensus       353 dsie  356 (361)
T COG3947         353 DSIE  356 (361)
T ss_pred             hhHH
Confidence            4433

>PRK10941 hypothetical protein; Provisional

Probab=84.69  E-value=6.7  Score=38.65  Aligned_cols=66  Identities=18%  Similarity=0.075  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ  338 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  338 (712)
                      ....+.++-.+|...++++.|+.+.+..+.+.     |+++..    +...|.+|.++|.+..|..-++..++.+
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp~e----~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDPYE----IRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCHHH----HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            45567788889999999999999999999987     777654    7889999999999999999999988884

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=84.44  E-value=46  Score=33.16  Aligned_cols=58  Identities=14%  Similarity=0.101  Sum_probs=37.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchh
Q 005139          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP  295 (712)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~  295 (712)
                      .+-+..++.. ++.+-|.....|+++.         ++.+.+|..|+.--  .--..+|..+|+++++..
T Consensus       189 eIMQ~AWRER-np~~RI~~A~~ALeIN---------~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~  246 (556)
T KOG3807|consen  189 EIMQKAWRER-NPPARIKAAYQALEIN---------NECATAYVLLAEEE--ATTIVDAERLFKQALKAG  246 (556)
T ss_pred             HHHHHHHHhc-CcHHHHHHHHHHHhcC---------chhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence            3334444443 4888888888898875         55566776665432  234667888888887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.10  E-value=82  Score=35.78  Aligned_cols=56  Identities=16%  Similarity=0.049  Sum_probs=41.2

Q ss_pred             cccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 005139          196 PMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSF  252 (712)
Q Consensus       196 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~  252 (712)
                      .+..+..|..|+........+....+..+...|..++..|+ +++|...|-+.+...
T Consensus       343 iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  343 ILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHcccC
Confidence            44555557777744444444445677888999999999997 999999999988654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.86  E-value=14  Score=32.35  Aligned_cols=88  Identities=8%  Similarity=-0.058  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      .....+..+...-...++.+++..++...--+.|+...        .-..-|.++...|+|.+|+..|+...      +.
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e--------~d~~dg~l~i~rg~w~eA~rvlr~l~------~~   73 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE--------LDMFDGWLLIARGNYDEAARILRELL------SS   73 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc--------cchhHHHHHHHcCCHHHHHHHHHhhh------cc
Confidence            34455556666666688999998888776666665543        34567889999999999999998765      33


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHH
Q 005139          428 DAEVASVDCSIGDTYLSLSRYD  449 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~  449 (712)
                      .+......-.++.|+..+||.+
T Consensus        74 ~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        74 AGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CCCchHHHHHHHHHHHhcCChH
Confidence            3344445555677777777753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00101 14_3_3 14-3-3 homologues

Probab=83.78  E-value=44  Score=32.39  Aligned_cols=182  Identities=15%  Similarity=0.114  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDIH-KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      +..+|.+..+.++|++...+..+++... +....   .   .-.+.|..+|- ..|....+...+...-..-...+....
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt---~---EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~   77 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT---V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH   77 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC---H---HHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence            4467788888999999999999987752 11111   1   12334444443 345556666555432111011111111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHc-----CC-----HHHHHHHH
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN---HPAVASVFVRLADMYNRT-----GK-----LRESKSYC  497 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~  497 (712)
                      ...+     .-|. ..=-++-..+....+.+.....-+.   ....+..+-..|..|...     |+     .+.|...|
T Consensus        78 ~~~~-----~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY  151 (244)
T smart00101       78 VASI-----KEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY  151 (244)
T ss_pred             HHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            1111     1111 1112344556667777766554332   122333344445555432     22     45889999


Q ss_pred             HHHHHHHhcCCCCCCChhHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHH
Q 005139          498 ENALRIYEKPVPGVPPEEIASGLTDVSSIY-ESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~  547 (712)
                      +.|+++....+ ...+|.......+.+..| .-+++.++|..+.++|+.-.
T Consensus       152 ~~A~e~a~~~L-~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      152 KSAQDIALAEL-PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999987755 334444444445555554 45799999998888777654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=83.63  E-value=84  Score=35.49  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=12.4

Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 005139          315 GDTYAMLGQLENSLMCYTT  333 (712)
Q Consensus       315 g~~~~~~g~~~~A~~~~~~  333 (712)
                      -.++...|+|+.|+.++-+
T Consensus       265 f~~LlLtgqFE~AI~~L~~  283 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR  283 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHh
Confidence            3556667778888777766

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=83.55  E-value=52  Score=33.07  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005139          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL  480 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  480 (712)
                      +....++.++|++++++.+......+.+.........+|.++...|+..++.+.+...-.......+- .+.....++.+
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~l  162 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSL  162 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHH
Confidence            34456799999999999998887777777788888899999999999999999999888877666543 33344555666


Q ss_pred             HHHH-HHcCCHHHHHHHHHH
Q 005139          481 ADMY-NRTGKLRESKSYCEN  499 (712)
Q Consensus       481 a~~~-~~~g~~~~A~~~~~~  499 (712)
                      +.-| ...|++...-...-+
T Consensus       163 ssqYyk~~~d~a~yYr~~L~  182 (380)
T KOG2908|consen  163 SSQYYKKIGDFASYYRHALL  182 (380)
T ss_pred             HHHHHHHHHhHHHHHHHHHH
Confidence            5544 456777764443333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.13  E-value=23  Score=35.02  Aligned_cols=69  Identities=10%  Similarity=0.160  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ....++..++..+...|+++.+...+++.+..        +|..-..|..+-..|...|+...|+..|++.-.....
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e  219 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE  219 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence            34577888999999999999999999999998        8888899999999999999999999999998886444

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.67  E-value=11  Score=28.73  Aligned_cols=44  Identities=11%  Similarity=0.067  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL  264 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~  264 (712)
                      .+..+...|..+-..|+ +.+|+.+|+++++++.+.....++...
T Consensus         5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            45677888888888987 999999999999999887665555433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.69  E-value=1.9  Score=28.92  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005139          672 KRRLAELLKEAGRVRSRKAQSLETLLDA  699 (712)
Q Consensus       672 ~~~la~~~~~~g~~~~A~~~~l~~~l~~  699 (712)
                      .+.||.+|..+|+.+.|+ ..+++++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar-~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGAR-ELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHH-HHHHHHHHc
Confidence            467999999999999999 999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=81.52  E-value=60  Score=32.38  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=36.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      +...+..+..+-++....|+++        ++..+.+|..|+.--  .--..+|..++++|++..
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~  246 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAG  246 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence            3444555666667777778887        777777777776532  223567778888887764

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=81.40  E-value=31  Score=28.98  Aligned_cols=75  Identities=8%  Similarity=-0.008  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139          561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA-------FFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (712)
Q Consensus       561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  633 (712)
                      +..+|...++.+++-.++-.|++|+.+..++......       ......-+||..+..+|+.+=.+.|++-|-+..-.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            4567888999999999999999999998887422211       122356789999999999999999999988876655


Q ss_pred             cC
Q 005139          634 CG  635 (712)
Q Consensus       634 ~~  635 (712)
                      ..
T Consensus        84 iP   85 (140)
T PF10952_consen   84 IP   85 (140)
T ss_pred             cc
Confidence            44

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.25  E-value=65  Score=33.54  Aligned_cols=115  Identities=16%  Similarity=0.026  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHcCC---HhHHHHHHHHhhchh
Q 005139          223 LLLKQARELISSGDNPQKALELALRAAKSFEIGAN----GKPSLELVMCLHVIAAIYCSLGQ---YNEAIPVLEQSIEIP  295 (712)
Q Consensus       223 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~----~~~~~~~~~~l~~la~~~~~~g~---~~~A~~~~~~al~~~  295 (712)
                      .+...|+.++.... |.+|+.++-.|-+.|-.+..    .-  .+++..-..+-+||+.+.+   .++|..-+..+-+-+
T Consensus       165 g~hekaRa~m~re~-y~eAl~~LleADe~F~~Cd~klLe~V--DNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  165 GLHEKARAAMEREM-YSEALLVLLEADESFSLCDSKLLELV--DNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHhhhHHHHHhh--cchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            34566777888864 99999988888777654321    11  1123333345667776654   345554444443333


Q ss_pred             hhhh-----------cccchHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          296 VIEE-----------GQEHALA--KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       296 ~~~~-----------~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      ...+           |+..|..  .+..+..-|.+.+++|+-++|..+++.+......
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e  299 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE  299 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            2222           2233321  2233455577777777777777777777665544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.71  E-value=76  Score=33.04  Aligned_cols=143  Identities=14%  Similarity=0.058  Sum_probs=77.5

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHH
Q 005139          208 QDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPV  287 (712)
Q Consensus       208 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~  287 (712)
                      +.+.+..+..|.....++ .|.+-+  .. .+.|.++|+++-..-     +.-..+...  ..+|..-+..|     ..+
T Consensus       197 dL~~E~~PKT~et~s~mI-~Gl~K~--~~-~ERA~~L~kE~~~~k-----~kv~~~aFN--~lI~~~S~~~~-----K~L  260 (625)
T KOG4422|consen  197 DLLFETLPKTDETVSIMI-AGLCKF--SS-LERARELYKEHRAAK-----GKVYREAFN--GLIGASSYSVG-----KKL  260 (625)
T ss_pred             HHHHhhcCCCchhHHHHH-HHHHHH--Hh-HHHHHHHHHHHHHhh-----heeeHHhhh--hhhhHHHhhcc-----HHH
Confidence            355555555555544432 333333  23 788888888775433     111111111  12344444444     344


Q ss_pred             HHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH-
Q 005139          288 LEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF-  366 (712)
Q Consensus       288 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-  366 (712)
                      ..+.+.....   |     .+..++.+-.|...-|+|+.|...+.+++.-.+++. - .|.....++.+ ..+.+-++. 
T Consensus       261 v~EMisqkm~---P-----nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-V-ePsLsSyh~ii-k~f~re~dp~  329 (625)
T KOG4422|consen  261 VAEMISQKMT---P-----NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-V-EPSLSSYHLII-KNFKRESDPQ  329 (625)
T ss_pred             HHHHHHhhcC---C-----chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-C-CcchhhHHHHH-HHhcccCCch
Confidence            4444433210   1     334578888899999999999999999998877752 2 35554444433 344444443 


Q ss_pred             HHHHHHHHHHH
Q 005139          367 SEAQKFCQMAL  377 (712)
Q Consensus       367 ~~A~~~~~~al  377 (712)
                      .-|..++...+
T Consensus       330 k~as~~i~dI~  340 (625)
T KOG4422|consen  330 KVASSWINDIQ  340 (625)
T ss_pred             hhhHHHHHHHH
Confidence            44555555544

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=80.64  E-value=36  Score=29.19  Aligned_cols=86  Identities=12%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHH
Q 005139          446 SRYDEAGFAYQKALTAFKTN-KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (712)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (712)
                      +.-..-..++++++..+... .-.+++....+|...+....      .+.++|.......-    |   ...+..|...|
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~I----G---~~~A~fY~~wA  106 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGI----G---TKLALFYEEWA  106 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTT----S---TTBHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCc----c---HHHHHHHHHHH
Confidence            55566677888888877542 12246666777776665433      77777776665411    1   23477789999


Q ss_pred             HHHHHcccHHHHHHHHHHHH
Q 005139          525 SIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al  544 (712)
                      ..+...|++++|.++|+.++
T Consensus       107 ~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  107 EFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhC
Confidence            99999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.06  E-value=16  Score=39.47  Aligned_cols=106  Identities=25%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF  599 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  599 (712)
                      ...++..+..+|-.++|++.       ..+.    .       ..=.+..+.|+++.|.++..++-.             
T Consensus       617 rt~va~Fle~~g~~e~AL~~-------s~D~----d-------~rFelal~lgrl~iA~~la~e~~s-------------  665 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQALEL-------STDP----D-------QRFELALKLGRLDIAFDLAVEANS-------------  665 (794)
T ss_pred             hhhHHhHhhhccchHhhhhc-------CCCh----h-------hhhhhhhhcCcHHHHHHHHHhhcc-------------
Confidence            45666777777766655443       2221    1       112345577888888777666532             


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      ..-|..||.+....+++..|.++|.+|..+-.-++-......+..+..||..-.+.|
T Consensus       666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            146778899999999999999999888775322222122233334444554444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	712
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		6e-10
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		8e-10
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-08
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		7e-05

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL   +   G++HPAVA+    LA +Y + GK
Sbjct: 41  DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK +    P ++A  L++++ + ++  + E+     ++AL+IY  
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y D+   +K  +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           +VA++   +   Y   ++Y EA      AL   +   G++HPAVA+    LA +Y + GK
Sbjct: 41  DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            +E++  C+ AL I EK +    P ++A  L +++ + ++  + E+     ++AL+IY  
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 550 APG-QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
             G     VA  +  +   Y   G Y D+   +K  +++
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 386 PASLEEAADRRLMGLICE--TKGDHEAA--LEHLVLASMTMIANDQDAEVASVDCSIGDT 441
           PA L     R L  L+ +  ++G +E A  L    L  +   +     +VA++   +   
Sbjct: 24  PARL-----RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV 78
Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   ++Y +A      AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL
Sbjct: 79  YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138
Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-QQSTVAGI 560
            I EK V G    ++A  L +++ + ++  + E+     Q+AL+IY    G     VA  
Sbjct: 139 EIREK-VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197
Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISK 587
           +  +   Y   G +  +   +K  +++
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTR 224

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 2/188 (1%)
Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
           PA       L   Y   G+   +   C+ AL   EK   G    ++A+ L  ++ +Y   
Sbjct: 24  PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-TSGHDHPDVATMLNILALVYRDQ 82
Query: 531 NELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
           N+ + A  LL  AL I     G+    VA     + V+Y   G Y ++    K A+    
Sbjct: 83  NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649
            +  +        LN + L C  +    E    ++ A  I + + GP  P+     +NLA
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Query: 650 GTYDAIGR 657
             Y   G+
Sbjct: 203 SCYLKQGK 210

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A    ++G+ Y     YDEA   YQKAL        E +P  A  +  L + Y + G   
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 492 ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDA 550
           E+  Y + AL +Y        P   A    ++ + Y    + ++AI+  QKAL++Y N+A
Sbjct: 61  EAIEYYQKALELY--------PNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
Query: 551 PGQQS 555
             +Q+
Sbjct: 112 EAKQN 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	712
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-40
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-23
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-15
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-35
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-36
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-23
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-28
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-21
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-20
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-20
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-24
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-18
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-21
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-20
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-12
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-11
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	7e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-09
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	7e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	8e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	7e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	8e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-04

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  150 bits (382), Expect = 6e-40
 Identities = 66/392 (16%), Positives = 125/392 (31%), Gaps = 39/392 (9%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
           + L +     C  G     +   E ++++     G E      A + QLG+ Y  L    
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
            +L  +   L + + +  +      +    L         F EA   CQ  LDI ++   
Sbjct: 65  KALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
                EA     +G +   KG          +        D                   
Sbjct: 123 KVG--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA------------------ 162

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
                A   Y++ L+        +  A    F  L + +   G  R++    E  L I +
Sbjct: 163 --LQAAVDFYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           +   G    E     +++ + Y  + E E A +  +K L +       ++  A     +G
Sbjct: 219 E--FGDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLG 274

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625
             Y +L +Y  + D     ++  + + +R     G A   +G A     + ++A+   E+
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
              I  +        T     NL+     +G 
Sbjct: 333 HLEISREVGDKSGELT--ARLNLSDLQMVLGL 362

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  106 bits (266), Expect = 9e-25
 Identities = 61/352 (17%), Positives = 113/352 (32%), Gaps = 42/352 (11%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +  KALE     L  A++       +           +      LG ++EAI   ++ ++
Sbjct: 62  DYAKALEYHHHDLTLARTI----GDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTG-------------LEVQKQ 340
           I   E   +   A       LG+ Y   G+          G             ++  ++
Sbjct: 116 I-SRELNDKVGEA--RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172

Query: 341 VLG-----ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
            L            G     L   H     F +A    +  L I K+ G  A+  E    
Sbjct: 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERRAY 230

Query: 396 RLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFA 454
             +G      G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A   
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDY 289

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           + K L   +  +  +          L + Y   G   ++  + E  L I  + V     E
Sbjct: 290 HLKHLAIAQ--ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE-VGDKSGE 346

Query: 515 E-----IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
                 ++     +   Y + N +      +  +L       G++ ++  +E
Sbjct: 347 LTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENME 398

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  101 bits (254), Expect = 4e-23
 Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 32/243 (13%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
            G+              ++ A+        E+   +++++ +L + Y       ++  Y 
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
            + L +    +        A    ++ +  + +   ++AI   Q+ L I  +   +    
Sbjct: 71  HHDLTLART-IGDQL--GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-E 126

Query: 558 AGIEAQMGVMYYMLGNYSDSYDS--------------------FKNAISKLRAIGERKSA 597
           A     +G +Y+  G                            ++  +S + A+G+R + 
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186

Query: 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
             G A   +G       +  +AV   E+   I  +E G         YSNL   Y  +G 
Sbjct: 187 --GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFG-DKAAERRAYSNLGNAYIFLGE 242

Query: 658 EEK 660
            E 
Sbjct: 243 FET 245

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 90.4 bits (225), Expect = 2e-19
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 23/277 (8%)

Query: 215 LDKPGLGPLLLKQARELISSGDNPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVI 271
             K    P             D  Q A++     L       +G               +
Sbjct: 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT--ALGDR----AAQGRAFGNL 193

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
              +  LG + +A+   EQ + I   E G + A  +   +  LG+ Y  LG+ E +   Y
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAERR--AYSNLGNAYIFLGEFETASEYY 250

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              L + +Q+         ++C  L   +     + +A  +    L I ++        E
Sbjct: 251 KKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG--E 306

Query: 392 AADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAE------VASVDCSIGDTYLS 444
                 +G      G+H+ A+        ++    D+  E      ++ +   +G +Y +
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
            +           +L   +   G  H       ++L 
Sbjct: 367 NNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMKLT 403

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 8/169 (4%)

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           E     L           +    +   + A+++  +      T++ I +Q+G  Y+ L +
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHD 62

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
           Y+ + +   + ++  R IG++       A   +G       + +EA+   +    I  + 
Sbjct: 63  YAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEA 682
                        NL   Y A G+         DV +    + + L+ A
Sbjct: 121 --NDKVGEARALYNLGNVYHAKGKSFGC-PGPQDVGEFPEEVRDALQAA 166

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  145 bits (369), Expect = 4e-38
 Identities = 56/396 (14%), Positives = 125/396 (31%), Gaps = 49/396 (12%)

Query: 237 NPQKAL---ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +        +   +     + G++      + + L +     C+ G     +   + +I+
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSS------MCLELALEGERLCNAGDCRAGVAFFQAAIQ 76

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
                      L+  A + QLG+ Y  LG    ++  +   L + K +         ++ 
Sbjct: 77  ---AGTEDLRTLS--AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR--LGEAKSS 129

Query: 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413
             L        +F EA   C+  L + +  G   S  E      +G +   KG H     
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS--EGRALYNLGNVYHAKGKHLGQRN 187

Query: 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473
                                                A   YQ+ L   +     +  A 
Sbjct: 188 PGKFGDDVK-----------------------EALTRAVEFYQENLKLMR--DLGDRGAQ 222

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533
                 L + Y   G  + +  + +  LRI  +   G    E     +++ + +  + + 
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIARE--FGDRAAE-RRANSNLGNSHIFLGQF 279

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
           E A +  ++ L +  +  G++   A     +G  Y +L  ++ + +     ++  + +G+
Sbjct: 280 EDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           R       A   +G A         A++  E+   +
Sbjct: 339 RIGE--ARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  137 bits (346), Expect = 5e-35
 Identities = 59/376 (15%), Positives = 128/376 (34%), Gaps = 44/376 (11%)

Query: 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363
           A A+    + LG         + +          Q+    +    +        E    A
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNS---------QQGSGSDGGSSMCLELALEGERLCNA 61

Query: 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMT 421
                   F Q A+    ++        +A    +G      GD+  A+++    L    
Sbjct: 62  GDCRAGVAFFQAAIQAGTEDLR----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
            + +      A    ++G+T   + R+DEA    ++ LT  +  +  +  +       L 
Sbjct: 118 SMNDRLG--EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR--QLGDRLSEGRALYNLG 173

Query: 482 DMYNRTGK-----------------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
           ++Y+  GK                 L  +  + +  L++    +             ++ 
Sbjct: 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-LGDRG--AQGRACGNLG 230

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584
           + Y  + + + AI+  Q+ L+I  +  G ++      + +G  +  LG + D+ + +K  
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289

Query: 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644
           ++    +GER+      +   +G      +  N A+E      +I  QE G         
Sbjct: 290 LALAVELGEREVE--AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA-QELG-DRIGEARA 345

Query: 645 YSNLAGTYDAIGREEK 660
             +L   + AIG  E+
Sbjct: 346 CWSLGNAHSAIGGHER 361

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 10/190 (5%)

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G      +  +   +             +   L        +  +    +   Q A++  
Sbjct: 22  GSGGGGTNSHDGNSQQGSG---SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607
            +      T++ I +Q+G  Y+ LG+Y+ +    K+ ++  +++ +R       +   +G
Sbjct: 79  TED---LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSGNLG 133

Query: 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPD 667
                    +EA    E   ++  Q              NL   Y A G+          
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191

Query: 668 VDDEKRRLAE 677
            DD K  L  
Sbjct: 192 GDDVKEALTR 201

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  139 bits (353), Expect = 1e-36
 Identities = 59/366 (16%), Positives = 117/366 (31%), Gaps = 39/366 (10%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG-HMQLGDTYAMLGQLEN 326
           L +     C  G     +   E ++++          L   +  + QLG+ Y  L     
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIYSQLGNAYFYLHDYAK 61

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +L  +   L + + +  +      +    L         F EA   CQ  LDI ++    
Sbjct: 62  ALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-- 117

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
             + EA     +G +   KG                                       +
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF--------------------PEDVRN 157

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   Y++ L+        +  A    F  L + +   G  R++    E  L I ++
Sbjct: 158 ALQAAVDLYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
              G    E     +++ + Y  + E E A +  +K L +       ++  A     +G 
Sbjct: 216 --FGDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGN 271

Query: 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626
            Y +L +Y  + D     ++  + + +R     G A   +G A     + ++A+   E+ 
Sbjct: 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 627 RSILEQ 632
             I  +
Sbjct: 330 LEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  120 bits (303), Expect = 5e-30
 Identities = 53/345 (15%), Positives = 113/345 (32%), Gaps = 40/345 (11%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           L  +   L  SGD  +  +        + ++G        L      +   Y  L  Y +
Sbjct: 8   LALEGERLCKSGDC-RAGVSFFE---AAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAK 61

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV- 341
           A+      + +   I +    A A       LG+T  +LG  + +++C    L++ +++ 
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKA----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 342 ------------------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
                              G++    G          V+      A    +  L +    
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN-ALQAAVDLYEENLSLVTAL 176

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTY 442
           G  A+  +      +G      G+   A+        +     D+ AE      ++G+ Y
Sbjct: 177 GDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RRAYSNLGNAY 233

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
           + L  ++ A   Y+K L   +  + ++    A     L + Y       ++  Y    L 
Sbjct: 234 IFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291

Query: 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           I ++ +              + + Y ++   +QA+   +K L+I 
Sbjct: 292 IAQE-LKDRI--GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  114 bits (287), Expect = 8e-28
 Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 36/292 (12%)

Query: 391 EAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
              +  L G      GD  A +      +     +  +    ++++   +G+ Y  L  Y
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508
            +A   +   LT  +T    +    A     L +     G   E+   C+  L I  + +
Sbjct: 60  AKALEYHHHDLTLARTIG--DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-L 116

Query: 509 PGVPPEEIASGLTDVSSIYESM--------------------NELEQAIKLLQKALKIYN 548
                   A  L ++ ++Y +                     N L+ A+ L ++ L +  
Sbjct: 117 NDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174

Query: 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
              G ++        +G  +Y+LGN+ D+  + +  +   +  G++ +     A + +G 
Sbjct: 175 AL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGN 231

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
           A +       A E +++   +  Q              +L  TY  +   EK
Sbjct: 232 AYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDYEK 281

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 99.6 bits (249), Expect = 6e-23
 Identities = 57/295 (19%), Positives = 100/295 (33%), Gaps = 42/295 (14%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           +  KALE     L  A++       +           +      LG ++EAI   ++ ++
Sbjct: 58  DYAKALEYHHHDLTLART----IGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

Query: 294 IPV-IEEGQEHALAKFAGHMQLGDTYAMLGQ--------------------LENSLMCYT 332
           I   + +    A A       LG+ Y   G+                    L+ ++  Y 
Sbjct: 112 ISRELNDKVGEARA----LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167

Query: 333 TGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
             L +    LG+     G     L   H     F +A    +  L I K+ G  A+  E 
Sbjct: 168 ENLSLVTA-LGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ER 223

Query: 393 ADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451
                +G      G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKA 282

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
              + K L   +  + ++          L + Y   G   ++  + E  L I  +
Sbjct: 283 IDYHLKHLAIAQ--ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
               L           +    +   + A+++  +      T++ I +Q+G  Y+ L +Y+
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYA 60

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + +   + ++  R IG++       A   +G       + +EA+   +    I  +   
Sbjct: 61  KALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-- 116

Query: 636 PYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEA 682
                      NL   Y A G+         D  +    +   L+ A
Sbjct: 117 NDKVGEARALYNLGNVYHAKGKSFG-CPGPQDTGEFPEDVRNALQAA 162

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
                +   Y  LG++  A    ++++ +   +       A       LG+TY +L   E
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEA--QSCYSLGNTYTLLQDYE 280

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
            ++  +   L + +++        G  C  L  A+       +A  F +  L+I ++ G
Sbjct: 281 KAIDYHLKHLAIAQELKDR--IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  127 bits (321), Expect = 1e-32
 Identities = 58/307 (18%), Positives = 119/307 (38%), Gaps = 9/307 (2%)

Query: 245 ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH- 303
                ++      G      +  LH +   Y S G+Y  A+P+ +Q++E      G +H 
Sbjct: 7   HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP 66

Query: 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363
            +A       L   Y    + +++       L ++++ LG+  P V  T   LA  + + 
Sbjct: 67  DVA--TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 124

Query: 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMT 421
            ++ EA+  C+ AL+I +        + A     + L+C+ +G +E    +    L    
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT-AFKTNKGENHPAVASVFVRL 480
                 D  VA    ++   YL   ++ +A   Y++ LT A +   G        +++  
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
            +     GK ++  S+ E            V    + + L ++ ++Y    + E A  L 
Sbjct: 245 EEREECKGKQKDGTSFGEYGGWYK---ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301

Query: 541 QKALKIY 547
           + A++  
Sbjct: 302 EAAMRSR 308

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  122 bits (308), Expect = 6e-31
 Identities = 60/340 (17%), Positives = 123/340 (36%), Gaps = 66/340 (19%)

Query: 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEV 431
               +++   G             + +   ++G +E A+      L  +   +     +V
Sbjct: 9   SGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV 68

Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A++   +   Y   ++Y +A      AL   +   G++HPAVA+    LA +Y + GK +
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 492 ESKSYCENALRIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
           E++  C+ AL I EK V G   +  ++A  L +++ + ++  + E+     Q+AL+IY  
Sbjct: 129 EAEPLCKRALEIREK-VLG--KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 550 APGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
             G     VA  +  +   Y   G +                                  
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKF---------------------------------- 211

Query: 609 ACVQRYSINEAVELFEEARSIL-EQECGPYHPDTLGVYSNLAGTYDAIGREEK------- 660
                    +A  L++E  +   E+E G    +   ++ +     +  G+++        
Sbjct: 212 --------KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263

Query: 661 ------LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 694
                     +P V    + L  L +  G+     A++LE
Sbjct: 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKF--EAAETLE 301

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  113 bits (286), Expect = 5e-28
 Identities = 62/352 (17%), Positives = 101/352 (28%), Gaps = 93/352 (26%)

Query: 314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFC 373
           L   YA  G+ E ++      LE  ++  G   P V      LA  +    ++ +A    
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 374 QMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL-VLASMTMIANDQDAEVA 432
             AL I +                     +T G      +H  V A++            
Sbjct: 93  NDALAIRE---------------------KTLGK-----DHPAVAATLN----------- 115

Query: 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
               ++   Y    +Y EA    ++AL   +   G++HP VA     LA +    GK  E
Sbjct: 116 ----NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 493 SKSYCENALRIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYN-D 549
            + Y + AL IY+    G  P+   +A    +++S Y    + +QA  L ++ L   +  
Sbjct: 172 VEYYYQRALEIYQT-KLG--PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228

Query: 550 APGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
             G        I           G                                    
Sbjct: 229 EFGSVDDENKPIWMHAEEREECKGKQ---------------------------------- 254

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
                    +     E       + C    P       NL   Y   G+ E 
Sbjct: 255 --------KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  104 bits (262), Expect = 8e-25
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 8/243 (3%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-ALAKFAGHMQLGDTYAMLGQLEN 326
           L+++A +Y    +Y +A  +L  ++ I     G++H A+A    +  L   Y   G+ + 
Sbjct: 72  LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN--LAVLYGKRGKYKE 129

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +       LE++++VLG+  P V +    LA       ++ E + + Q AL+I++    P
Sbjct: 130 AEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIA-NDQDAEVASVDCSIGDTYL 443
                A  +  +      +G  + A      +L           D E   +     +   
Sbjct: 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 249

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
              +  +     +     +      + P V +    L  +Y R GK   +++  E A+R 
Sbjct: 250 CKGKQKDGTSFGEYGG--WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307

Query: 504 YEK 506
            ++
Sbjct: 308 RKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 98.8 bits (247), Expect = 8e-23
 Identities = 54/256 (21%), Positives = 81/256 (31%), Gaps = 61/256 (23%)

Query: 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
                   +    G   PA       L   Y   G+   +   C+ AL   EK   G   
Sbjct: 7   HSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-TSGHDH 65

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLG 572
            ++A+ L  ++ +Y   N+ + A  LL  AL I     G+    VA     + V+Y   G
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125

Query: 573 NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
            Y                                           EA  L + A  I E+
Sbjct: 126 KY------------------------------------------KEAEPLCKRALEIREK 143

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIG---------------REEKLGTANPDVDDEKRRLAE 677
             G  HPD     +NLA      G                + KLG  +P+V   K  LA 
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203

Query: 678 LLKEAGRVRSRKAQSL 693
              + G+   ++A++L
Sbjct: 204 CYLKQGKF--KQAETL 217

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  125 bits (316), Expect = 4e-32
 Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 21/274 (7%)

Query: 398 MGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
                       +A+      L  +   +     +VA++   +   Y   ++Y EA    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
             AL   +   G++HPAVA+    LA +Y + GK +E++  C+ AL I EK V G    +
Sbjct: 67  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-VLGKFHPD 125

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNY 574
           +A  L +++ + ++  + E+     ++AL+IY    G     VA  +  +   Y   G Y
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185

Query: 575 SDSYDSFKNAISKL-RAIGERKSAFFG-------VALNQMGLACVQRYSINEAVELFEEA 626
            D       A +     +       FG                   +    ++    E  
Sbjct: 186 QD-------AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE-- 236

Query: 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
                + C    P       +L   Y   G+ E 
Sbjct: 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  118 bits (298), Expect = 1e-29
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 17/287 (5%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-----ALAKFAGHMQLGDTYAMLG 322
            H        L     A+P+ +Q++E      G +H      L        L   Y    
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLN------ILALVYRDQN 57

Query: 323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382
           + + +       L ++++ LG+  P V  T   LA  + +  ++ EA+  C+ AL+I + 
Sbjct: 58  KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117

Query: 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGD 440
                  + A     + L+C+ +G  E    +    L          D  VA    ++  
Sbjct: 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNK-GENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
            YL   +Y +A   Y++ LT     + G  +     +++   +      K R+S  Y E 
Sbjct: 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237

Query: 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
                      V    + + L  + ++Y    +LE A  L   A + 
Sbjct: 238 GSWYK---ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  102 bits (257), Expect = 3e-24
 Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 8/242 (3%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH-ALAKFAGHMQLGDTYAMLGQLEN 326
           L+++A +Y    +Y EA  +L  ++ I     G++H A+A    +  L   Y   G+ + 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN--LAVLYGKRGKYKE 103

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +       LE++++VLG+  P V +    LA       +  E + + + AL+I+     P
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQD-AEVASVDCSIGDTYL 443
                A  +  +      +G ++ A      +L             +   +     +   
Sbjct: 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           S  +  ++    +     +      + P V +    L  +Y R GKL  + +  + A R 
Sbjct: 224 SKDKRRDSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

Query: 504 YE 505
            +
Sbjct: 282 RK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  101 bits (253), Expect = 8e-24
 Identities = 49/271 (18%), Positives = 85/271 (31%), Gaps = 66/271 (24%)

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
              L     A    ++AL   +   G +HP VA++   LA +Y    K +E+     +AL
Sbjct: 11  SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 70

Query: 502 RIYEKPVPGVPPE--EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVA 558
            I EK   G   +   +A+ L +++ +Y    + ++A  L ++AL+I     G+    VA
Sbjct: 71  AIREK-TLG--KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127

Query: 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618
                + ++    G                                             E
Sbjct: 128 KQLNNLALLCQNQGKA------------------------------------------EE 145

Query: 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----------------REEKLG 662
               +  A  I     GP  P+     +NLA  Y   G                 E++ G
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205

Query: 663 TANPDVDDEKRRLAELLKEAGRVRSRKAQSL 693
           + N D         E  +   +   R +   
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKR--RDSAPY 234

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG----- 656
           + +              AV L ++A   LE+  G  HPD   + + LA  Y         
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 657 ----------REEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 693
                     RE+ LG  +P V      LA L  + G+   ++A+ L
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY--KEAEPL 107

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  119 bits (300), Expect = 4e-29
 Identities = 74/470 (15%), Positives = 155/470 (32%), Gaps = 94/470 (20%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
            ++ A     +G + + A    ++  +         P  +    L ++++I+    + + 
Sbjct: 2   PMELAHREYQAG-DFEAAERHCMQLWRQE-------P--DNTGVLLLLSSIHFQCRRLDR 51

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
           +      +I+  P        A A    +  LG+ Y   GQL+ ++  Y   L +     
Sbjct: 52  SAHFSTLAIKQNP------LLAEA----YSNLGNVYKERGQLQEAIEHYRHALRL----- 96

Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402
               P   +    LA A V A     A +    AL  + D            R  +G + 
Sbjct: 97  ---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL--------YCVRSDLGNLL 145

Query: 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462
           +  G  E A    + A    I    +   A    ++G  + +      A   ++KA+   
Sbjct: 146 KALGRLEEAKACYLKA----IETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAV--- 196

Query: 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522
                   P     ++ L ++         + +    AL +   P         A    +
Sbjct: 197 -----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP-------NHAVVHGN 242

Query: 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDS 580
           ++ +Y     ++ AI   ++A+++    P         +A   +       G+ +++ D 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFP---------DAYCNLANALKEKGSVAEAEDC 293

Query: 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640
           +  A+                +LN +     ++ +I EAV L+ +A  +         P+
Sbjct: 294 YNTAL-------RLCPTHAD-SLNNLANIKREQGNIEEAVRLYRKALEV--------FPE 337

Query: 641 TLGVYSNLAGTYDAIGREEKLGTA-------NPDVDDEKRRLAELLKEAG 683
               +SNLA      G+ ++           +P   D    +   LKE  
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 96.8 bits (242), Expect = 1e-21
 Identities = 60/385 (15%), Positives = 122/385 (31%), Gaps = 75/385 (19%)

Query: 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369
           G M+L       G  E +                  +P        L+  H Q  +   +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRS 52

Query: 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQD 428
             F  +A+  +           A     +G + + +G  + A+EH   A    +      
Sbjct: 53  AHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHYRHA----LRLKPDF 100

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
            +      ++    ++    + A  AY  AL        + +P +  V   L ++    G
Sbjct: 101 IDGYI---NLAAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGNLLKALG 149

Query: 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548
           +L E+K+    A+    +P         A   +++  ++ +  E+  AI   +KA+ +  
Sbjct: 150 RLEEAKACYLKAIET--QP-------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 549 DAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606
           +           +A   +G +      +  +  ++  A+               V    +
Sbjct: 201 NFL---------DAYINLGNVLKEARIFDRAVAAYLRAL-------SLSPNHA-VVHGNL 243

Query: 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----EEKLG 662
                ++  I+ A++ +  A  +         P     Y NLA      G     E+   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 663 TA---NPDVDDEKRRLAELLKEAGR 684
           TA    P   D    LA + +E G 
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGN 320

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  105 bits (265), Expect = 3e-26
 Identities = 23/207 (11%), Positives = 61/207 (29%), Gaps = 7/207 (3%)

Query: 368 EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427
           EA  +             PA+   +  R ++G +       + A             +  
Sbjct: 4   EAHDYALAERQAQALLAHPAT--ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61

Query: 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT 487
                     +G        +D A   + +      +   E+  A ++    +A +    
Sbjct: 62  HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHF 120

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G L  ++   E +L   ++          A     +  + +    L +A +   +A  I+
Sbjct: 121 GDLAGARQEYEKSLVYAQQA--DDQVAI-ACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNY 574
            +       V  +  ++  + +   ++
Sbjct: 178 AEL-EDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  101 bits (253), Expect = 1e-24
 Identities = 25/208 (12%), Positives = 63/208 (30%), Gaps = 9/208 (4%)

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           EA         A       +    +     L  +Y    +  E+++  +   +  +K   
Sbjct: 4   EAHDYALAERQAQA--LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-- 59

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
           G    E    L  V  +       + A +   +  ++    P      +    ++  +  
Sbjct: 60  GDHTAE-HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
             G+ + +   ++ ++   +   ++ +     A   +G    Q  ++ EA + +  AR I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAI--ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGR 657
              E          + + L G       
Sbjct: 177 F-AELE-DSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 13/200 (6%)

Query: 411 ALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
           A ++ +            A  +     +G  Y  + R+DEA  ++Q      +  K  +H
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ--KSGDH 62

Query: 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530
            A      ++  +    G    ++        +         P   ++   +V+++    
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS--LPEDPLAASANAYEVATVALHF 120

Query: 531 NELEQAIKLLQKALKIY---NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            +L  A +  +K+L      +D        A     +G +     N  ++   +  A   
Sbjct: 121 GDLAGARQEYEKSLVYAQQADDQVAI----ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 588 LRAIGERKSAFFGVALNQMG 607
              + + ++      + ++ 
Sbjct: 177 FAELEDSEAV--NELMTRLN 194

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 28/210 (13%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299
           +A + AL   ++  + A+            ++  +Y  + +++EA    +   +    + 
Sbjct: 4   EAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKS 59

Query: 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359
           G   A  +     Q+G    M G  + +  C+    E+    L E           +A  
Sbjct: 60  GDHTAEHR--ALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATV 116

Query: 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA- 418
            +     + A++  + +L   +      +   A   R +G + + + +   A +H + A 
Sbjct: 117 ALHFGDLAGARQEYEKSLVYAQQADDQVA--IACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
            +     D    V  +   +         +
Sbjct: 175 DIFAELEDS-EAVNELMTRLNGLEHHHHHH 203

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  109 bits (275), Expect = 4e-26
 Identities = 53/328 (16%), Positives = 107/328 (32%), Gaps = 22/328 (6%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFE-IGANGKPSLELVMC--LHVIAAIYCSLGQ 280
           L+    +L+     P K         +  E I    K    L+    L           +
Sbjct: 57  LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116

Query: 281 YNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339
           Y EAI    ++ +  P + +  E A      H ++ + Y  + Q   S+      L++ +
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399
                   R  ++   +A  +     + +A    + AL++  D  +      A     + 
Sbjct: 173 NHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIA 229

Query: 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
              +  GD + A+EH    +  +        +  V   +  T     +  +A    ++ L
Sbjct: 230 NSYDRSGDDQMAVEHF-QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
                   + +  +      L  +Y  T   R+      + L  +EK         I + 
Sbjct: 289 DHITARSHKFYKELFLF---LQAVYKETVDERK----IHDLLSYFEK---KNLHAYIEAC 338

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIY 547
               ++++ES    EQA    +K LK  
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  106 bits (265), Expect = 9e-25
 Identities = 44/346 (12%), Positives = 118/346 (34%), Gaps = 24/346 (6%)

Query: 322 GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381
             + ++ +      +  +Q+  E D  +      +   H   L + E  K       + +
Sbjct: 26  FSVPDAEILKAEVEQDIQQM--EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTE 83

Query: 382 DNGSPASLEEAADRRL-------MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
              +  + ++     L        G+    + ++  A+ +   A   +     D E A  
Sbjct: 84  LLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF 143

Query: 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK 494
              + + Y  + +   + +   +AL  ++ +   +   + S+FV +A  Y+      ++ 
Sbjct: 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV-IAGNYDDFKHYDKAL 202

Query: 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ 554
            + E AL +    +       IA  L ++++ Y+   + + A++  QKA K+  +     
Sbjct: 203 PHLEAALELAMD-IQNDR--FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614
             +  +   +       G    ++   +  +  + A   +      + L  +    V   
Sbjct: 260 --LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317

Query: 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
            I++ +  FE+            H        + A  +++    E+
Sbjct: 318 KIHDLLSYFEKKN---------LHAYIEACARSAAAVFESSCHFEQ 354

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  104 bits (262), Expect = 2e-24
 Identities = 43/356 (12%), Positives = 109/356 (30%), Gaps = 24/356 (6%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295
            +   A  L     +  +     +   +L++   ++   +  +  Y E          + 
Sbjct: 26  FSVPDAEILKAEVEQDIQ---QMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82

Query: 296 VIEEGQEHA------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349
            + E  E        L K+      G       +   ++  Y    +    V    D   
Sbjct: 83  ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEK 140

Query: 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE 409
            E    +AEA+    Q   +      ALDI++++    S+       ++    +    ++
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYD 199

Query: 410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469
            AL HL  A    +    D  +A    +I ++Y        A   +QKA    +    + 
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
            P    +F  L+    + G+ +++  + E  L                    ++    ++
Sbjct: 260 LPK--VLFG-LSWTLCKAGQTQKAFQFIEEGLDHIT--------ARSHKFYKELFLFLQA 308

Query: 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
           + +     + +   L  +       + +         ++    ++  +   ++  +
Sbjct: 309 VYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 37/263 (14%), Positives = 76/263 (28%), Gaps = 15/263 (5%)

Query: 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK- 463
           +     A          +   ++D ++      +   +  +  Y E G  Y    T  + 
Sbjct: 25  QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84

Query: 464 ------TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
                   K                      +  E+  Y   A +     V      E A
Sbjct: 85  LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDI--EKA 141

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
                V+  Y  M +   ++  + +AL IY + P            +   Y    +Y  +
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637
               + A+     I   +     ++L  +  +  +      AVE F++A  +  ++    
Sbjct: 202 LPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 638 HPDTLGVYSNLAGTYDAIGREEK 660
            P        L+ T    G+ +K
Sbjct: 260 LPKV---LFGLSWTLCKAGQTQK 279

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 91.8 bits (228), Expect = 5e-20
 Identities = 26/270 (9%), Positives = 78/270 (28%), Gaps = 17/270 (6%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
              +A+       ++ +        +E       +A  Y  + Q + ++  + Q+++I  
Sbjct: 116 EYVEAIGYYR---EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
                            +   Y      + +L      LE+   +  +    +  +   +
Sbjct: 173 NHPLYSIRTI--QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND--RFIAISLLNI 228

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
           A ++ ++     A +  Q A  + ++               +       G  + A + + 
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCKAGQTQKAFQFI- 284

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
              +  I          +   +   Y       +        L+ F+  K   H  + + 
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERK----IHDLLSYFE--KKNLHAYIEAC 338

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A ++  +    ++ ++    L+  E 
Sbjct: 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 87.9 bits (218), Expect = 9e-19
 Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 15/235 (6%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295
                ++   L+A   ++   +   S+  +  L VIA  Y     Y++A+P LE ++E+ 
Sbjct: 155 KQTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL- 211

Query: 296 VIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355
            ++   +  +A     + + ++Y   G  + ++  +    +V ++ + +  P+       
Sbjct: 212 AMDIQNDRFIAIS--LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK---VLFG 266

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           L+    +A Q  +A +F +  LD           E     + +      +      L + 
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
                     +  A + +   S    + S   +++A   Y+K L A +       
Sbjct: 327 -------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  104 bits (262), Expect = 2e-24
 Identities = 42/303 (13%), Positives = 105/303 (34%), Gaps = 20/303 (6%)

Query: 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420
           ++ ++  E  +   + L+I K       L E       G+    + ++ +A++    A  
Sbjct: 72  LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131

Query: 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480
            +I      E A     + ++Y  + +   +    ++A   +K ++  N   +    +  
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL-F 190

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
           A  +    +  ++ S+ + A  + E       P+ +   L ++     S ++ E AI   
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247

Query: 541 QKALKIY---NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597
           ++A+ ++   N  P        I      ++Y LG    +++     ++  +  G+    
Sbjct: 248 KRAIAVFEESNILPSLPQAYFLI----TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303

Query: 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
                L  + L+     +I    +  E             + D      ++A  Y     
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESKML---------YADLEDFAIDVAKYYHERKN 354

Query: 658 EEK 660
            +K
Sbjct: 355 FQK 357

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  102 bits (255), Expect = 2e-23
 Identities = 39/328 (11%), Positives = 107/328 (32%), Gaps = 17/328 (5%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
           + L  +  +     +    +  L   I+    ++ +   L ++  +   G       +  
Sbjct: 64  LMLEYLEPLEKMRIEEQPRLSDLLLEIDK---KQARLTGLLEYYFNFFRGMYELDQREYL 120

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
           +++  +         V    +    E    ++E++    Q   +  + + A +I+K++ +
Sbjct: 121 SAIKFFKKAESKLIFVKDRIE--KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
             ++       L          +E A+ H   A     A  Q   +     +IG    S 
Sbjct: 179 Y-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
           S+Y++A   +++A+  F+  +    P++   +  +  ++ + GK+ ++  Y    +   +
Sbjct: 238 SQYEDAIPYFKRAIAVFE--ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
           K           S         +S+       + +Q             + +      + 
Sbjct: 296 K----AGDVIYLSEF----EFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGE 593
             Y+   N+  +   F       + I  
Sbjct: 347 KYYHERKNFQKASAYFLKVEQVRQLIQG 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 16/270 (5%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
               A++      K+       K  +E       ++  Y  + Q   ++    Q+ EI  
Sbjct: 118 EYLSAIKFFK---KAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
             E     L +   H      +  L Q E+++  +     + +    +    +G T   +
Sbjct: 175 EHEAYNIRLLQ--CHSLFATNFLDLKQYEDAISHFQKAYSMAEA-EKQ-PQLMGRTLYNI 230

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
                   Q+ +A  + + A+ + +++    S        L+  I    G  + A E+  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
              M       D    S    +   YLS    +    A Q      +      +  +   
Sbjct: 289 KG-MAYSQKAGDVIYLSEFEFLKSLYLSGPDEE----AIQGFFDFLE--SKMLYADLEDF 341

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506
            + +A  Y+     +++ +Y     ++ + 
Sbjct: 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 87.6 bits (217), Expect = 1e-18
 Identities = 28/234 (11%), Positives = 82/234 (35%), Gaps = 14/234 (5%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
               +++ A +A + ++   +   ++ L+ C  + A  +  L QY +AI   +++  +  
Sbjct: 158 QTYFSMDYARQAYEIYK--EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-A 214

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
             E Q   + +      +G       Q E+++  +   + V ++      P + +    +
Sbjct: 215 EAEKQPQLMGRT--LYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLI 270

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLV 416
            + H +  +  +A ++    +   +  G        ++   +  +  +  D EA      
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDEEAIQGFFD 327

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470
                + +    A++      +   Y     + +A   + K     +  +G   
Sbjct: 328 F----LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 96.2 bits (239), Expect = 1e-21
 Identities = 43/343 (12%), Positives = 110/343 (32%), Gaps = 23/343 (6%)

Query: 205 HKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL 264
           H+ +D+ E  +           +A+  I+ G+ P +A  LA  A +    G         
Sbjct: 2   HEIKDIREDTM----HAEFNALRAQVAINDGN-PDEAERLAKLALEELPPGW----FYSR 52

Query: 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL 324
           ++   V+  +    G+   ++ +++Q+ ++       +         +Q  +     G L
Sbjct: 53  IVATSVLGEVLHCKGELTRSLALMQQTEQM---ARQHDVWHYALWSLIQQSEILFAQGFL 109

Query: 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
           + +        ++  +   E  P      R  A+      +  EA+   +  +++     
Sbjct: 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169

Query: 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGDTYL 443
               L+  A   ++      +GD + A   L      +      ++ +++ +      + 
Sbjct: 170 PQQQLQCLA---MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
                  A       L      +  N+  +   +  +A      G+   ++   E     
Sbjct: 227 MTGDKAAA----ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282

Query: 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
                  +  +   + L   + +Y        A ++L  ALK+
Sbjct: 283 ARS--LRLMSDLNRNLLLL-NQLYWQAGRKSDAQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 92.0 bits (228), Expect = 4e-20
 Identities = 44/369 (11%), Positives = 102/369 (27%), Gaps = 29/369 (7%)

Query: 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE 409
            E     A+  +      EA++  ++AL+        +         ++G +   KG+  
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---RIVATSVLGEVLHCKGELT 70

Query: 410 AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469
            +L  +         +D             +   +      A    +KA         E 
Sbjct: 71  RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130

Query: 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529
            P    +    A +     +L E+++   + + +         P++    L  +     +
Sbjct: 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS----YQPQQQLQCLAMLIQCSLA 186

Query: 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
             +L+ A   L +   +  +       ++       + + M G+      +  N +    
Sbjct: 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD----KAAAANWLRHTA 242

Query: 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649
                 + F       +  A +       A  + EE              D       L 
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLN 300

Query: 650 GTYDAIGREEK--------LGTANPD-----VDDEKRRLAELLKEA---GRVRSRKAQSL 693
             Y   GR+          L  AN          E   +A+ L++      +   +    
Sbjct: 301 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 360

Query: 694 ETLLDANSR 702
           + +L   ++
Sbjct: 361 QRILREINQ 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 95.4 bits (237), Expect = 8e-21
 Identities = 58/424 (13%), Positives = 123/424 (29%), Gaps = 62/424 (14%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
           +++A +    GQ   A+  L ++ E+   E   +  +            Y  +G+L +  
Sbjct: 55  NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSP 386
           +       V ++          E         ++    Q   A+   + AL+    N   
Sbjct: 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--GDTYLS 444
            S    A  RL     +     + A++ L  A    I  + D +   V  ++        
Sbjct: 175 TSGLAIASYRL-----DNWPPSQNAIDPLRQA----IRLNPDNQYLKVLLALKLHKMREE 225

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
                E     ++AL        E  P V  V    A  Y R  +  ++    + AL   
Sbjct: 226 GEEEGEGEKLVEEAL--------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

Query: 505 EKPVPGVPPEEI-----------ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553
                   P              A     ++     M    + ++L+  A+     A   
Sbjct: 278 --------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329

Query: 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-Q 612
              +  + + +  ++ +   Y ++   F+   SK     E       +   + G   + Q
Sbjct: 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQ 384

Query: 613 RYSINEAVELFEEARSI----------------LEQECGPYHPDTLGVYSNLAGTYDAIG 656
               ++A+  F E   I                + +     +         LA   +   
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 657 REEK 660
           + ++
Sbjct: 445 KMQQ 448

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 54/344 (15%), Positives = 107/344 (31%), Gaps = 46/344 (13%)

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR--------------LMGLICE 403
           E +  +L+ S  Q  C    ++ +   S    E+    R              L+  +  
Sbjct: 3   ENNKNSLESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKH 62

Query: 404 TKGDHEAALEHLVLA---SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
            KG +EAALE L  A        A+  +        +    Y  + R  +      K   
Sbjct: 63  LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122

Query: 461 AFKTNKGENHPAVASVFVRL--ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518
             +            +        +     +   +K   E AL       P  P  E  S
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNP--EFTS 176

Query: 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578
           GL   S   ++    + AI  L++A+++  D          ++  + +  + +    +  
Sbjct: 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-------NQYLKVLLALKLHKMREEGEEE 229

Query: 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638
              +  + +  A+ E+        L        ++   ++A+EL ++A            
Sbjct: 230 GEGEKLVEE--AL-EKAPGVT-DVLRSAAKFYRRKDEPDKAIELLKKALEY--------I 277

Query: 639 PDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEA 682
           P+   ++  +   Y A   +      N      K  L EL+  A
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK--LLELIGHA 319

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 70.4 bits (172), Expect = 8e-13
 Identities = 43/379 (11%), Positives = 99/379 (26%), Gaps = 65/379 (17%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           Q  ++      + F            + C      + C   Q   A    E+++E  P  
Sbjct: 114 QIYVDKVKHVCEKFSSPYR--IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-- 169

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
               ++          L      L             ++  +Q +   +P        LA
Sbjct: 170 ----KNPEF----TSGLAIASYRLDNWPP----SQNAIDPLRQAI-RLNPDNQYLKVLLA 216

Query: 358 EA----HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413
                   +  +  E +K  + AL+                 R        K + + A+E
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGV--------TDVLRSAAKFYRRKDEPDKAIE 268

Query: 414 HLVLASMTMIANDQDAEV---------ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
            L  A   +     +A +         A V   +      +    +       A+   K 
Sbjct: 269 LLKKA---LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
              E +  +  V   LA ++    +  E++ Y +        P       +    L   +
Sbjct: 326 AD-EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-----VAKQLLHLRYGN 379

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA-----------------QMGVM 567
                M   ++AI    + +KI   +  ++     ++                   +  +
Sbjct: 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439

Query: 568 YYMLGNYSDSYDSFKNAIS 586
             +      + +  +  + 
Sbjct: 440 QELNEKMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 45/306 (14%), Positives = 101/306 (33%), Gaps = 41/306 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326
           L + +    +      AI  L Q+I + P      ++   K    ++L        +   
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNP------DNQYLKVLLALKLHKMREEGEEEGE 231

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
                   LE          P V +  R  A+ + +  +  +A +  + AL+   +N   
Sbjct: 232 GEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283

Query: 387 ----ASLEEAADRRLMGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDT 441
                    A   ++M L           LE +  A +    A++ +  +  V   +   
Sbjct: 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM-YNRTGKLRESKSYCENA 500
           +    +Y+EA + +QK       +K     A   + +R  +    +     ++  +    
Sbjct: 344 HALADQYEEAEYYFQKEF-----SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

Query: 501 LRI----YEKPVPGVPPEEIASGLTDVSS-----------IYESMNELEQAIKLLQKALK 545
           ++I     EK       ++IA      +            + E   +++QA +  ++ L+
Sbjct: 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

Query: 546 IYNDAP 551
             +  P
Sbjct: 459 SGSLIP 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 51/391 (13%), Positives = 108/391 (27%), Gaps = 60/391 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           I+A Y S G   + I    +++EI P      +H+ A     ++       LG   +++ 
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKP------DHSKA----LLRRASANESLGNFTDAMF 114

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
             +             +P +       A   +      +  +       +   N S AS 
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR----GSQVLPSNTSLASF 170

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
               D  L      T  +++ A   L  A    +     A       +      S   Y 
Sbjct: 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDA----LQRLYSATDEGYLVANDLLTKSTDMYH 226

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
               A                   A         +     L +++   + ++ ++     
Sbjct: 227 SLLSANTVDD--------PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--- 275

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569
                   +    ++         ++  K  QKA+ +                  G MY+
Sbjct: 276 -------PNSYIFLALTLADKENSQEFFKFFQKAVDL-------NPEYPPTYYHRGQMYF 321

Query: 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +L +Y ++ + F+ A S        ++ +      Q+     ++    E+   F E +  
Sbjct: 322 ILQDYKNAKEDFQKAQSL-----NPENVY---PYIQLACLLYKQGKFTESEAFFNETKLK 373

Query: 630 LEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
                    P    V +  A      G  + 
Sbjct: 374 --------FPTLPEVPTFFAEILTDRGDFDT 396

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 44/384 (11%), Positives = 108/384 (28%), Gaps = 58/384 (15%)

Query: 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
           G +    P + Q   +    + Q +A+         G+ +        ++  Y   +E+ 
Sbjct: 1   GSHMNGEPDIAQLKGLS-PSQRQAYAVQ----LKNRGNHFFTAKNFNEAIKYYQYAIEL- 54

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
                  DP        ++  ++      +  +F   AL+I  D+       +A  RR  
Sbjct: 55  -------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRR-- 99

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
               E+ G+   A+  L + S   +  D D               ++   +E     +  
Sbjct: 100 ASANESLGNFTDAMFDLSVLS---LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156

Query: 459 LTAFKTNKGENHPAVASVFVRLA-DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
            +    +              L     N +     + +   +AL+               
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD-------- 208

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577
                      + + L ++  +    L         +   A      G+ +++  N  D+
Sbjct: 209 ------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 578 YDSFKNAIS-KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
               + +I+                +   + L    + +  E  + F++A  +       
Sbjct: 263 QVLLQESINLHPTPN----------SYIFLALTLADKENSQEFFKFFQKAVDL------- 305

Query: 637 YHPDTLGVYSNLAGTYDAIGREEK 660
            +P+    Y +    Y  +   + 
Sbjct: 306 -NPEYPPTYYHRGQMYFILQDYKN 328

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 71/513 (13%), Positives = 135/513 (26%), Gaps = 118/513 (23%)

Query: 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELAL--- 246
             A   PM +R       + ++E      G G  +L     L S        LE++    
Sbjct: 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185

Query: 247 -----RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ 301
                 A            S      L     +  S   Y+  +        +      +
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL-----RE 240

Query: 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361
             ALA        G  + +   L ++ +     + +         P    +  +LA    
Sbjct: 241 NAALA----LCYTGIFHFLKNNLLDAQVLLQESINL--------HPTP-NSYIFLALTLA 287

Query: 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421
                 E  KF Q A+D+                           ++     H       
Sbjct: 288 DKENSQEFFKFFQKAVDL-------------------------NPEYPPTYYHR------ 316

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
                            G  Y  L  Y  A   +QKA           +P     +++LA
Sbjct: 317 -----------------GQMYFILQDYKNAKEDFQKAQ--------SLNPENVYPYIQLA 351

Query: 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
            +  + GK  ES+++          P        +    T  + I     + + AIK   
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK--FP-------TLPEVPTFFAEILTDRGDFDTAIKQYD 402

Query: 542 KALKIYNDAPG---------QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            A ++                ++T+   ++           ++ +      A        
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC------- 455

Query: 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
           E        A   +    +Q   I+EA+ELFE++  +                     T+
Sbjct: 456 ELDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAIL--------ARTMDEKLQAT--TF 504

Query: 653 DAIGREEKLGTANPDVDDEKRRLAELLKEAGRV 685
               + +K   A+P +  +        +  G +
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 93.8 bits (233), Expect = 5e-20
 Identities = 51/445 (11%), Positives = 127/445 (28%), Gaps = 72/445 (16%)

Query: 236 DNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI- 294
            NP +  E         + G   + S+      ++   +Y +L  ++ A    ++++ + 
Sbjct: 176 TNPFRKDEKNANKLLMQDGGIKLEASM-----CYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 295 -----------------PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
                               E      L       +       L  L+ +   +   L  
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 338 QKQVLG--ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
            +  L       +  +     A+      +F +        L+I   N            
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN--------LDVY 342

Query: 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            L        G+           S  ++    +  V     ++G  YL +++  EA   +
Sbjct: 343 PLHLASLHESGEKNKLYL----ISNDLVDRHPEKAVTW--LAVGIYYLCVNKISEARRYF 396

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
            K+            P     ++  A  +   G+  ++ S    A R+            
Sbjct: 397 SKSS--------TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQ-------G 439

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
                  +   +  +  +  A + LQ +  ++   P     +   E  +GV+ +   +  
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP-----LLLNE--LGVVAFNKSDMQ 492

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + + F+NA+  ++     +  +       +G A  +    + A++   +   +      
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWA-ATWANLGHAYRKLKMYDAAIDALNQGLLL------ 545

Query: 636 PYHPDTLGVYSNLAGTYDAIGREEK 660
               +   V++ +A  Y        
Sbjct: 546 --STNDANVHTAIALVYLHKKIPGL 568

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 46/411 (11%), Positives = 119/411 (28%), Gaps = 66/411 (16%)

Query: 243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE 302
           E  L    ++   +        +  L+++     S             SI        ++
Sbjct: 251 EWDLVLKLNYSTYSKEDA--AFLRSLYMLKLNKTSHEDELRRAEDYLSSING-----LEK 303

Query: 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362
            +       +   DT  +  +  + L           ++L E DP   +       +  +
Sbjct: 304 SSDL----LLCKADTLFVRSRFIDVLAIT-------TKIL-EIDPYNLDVYPLHLASLHE 351

Query: 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422
           + + ++        +D H +     +         +G+          A  +   +  + 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEK--AVTWL------AVGIYYLCVNKISEARRYFSKS--ST 401

Query: 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           +    D +          ++     +D+A  AY  A   F+             ++ L  
Sbjct: 402 M----DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT--------HLPYLFLGM 449

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
            + + G +  +  Y +++  +                L ++  +  + ++++ AI   Q 
Sbjct: 450 QHMQLGNILLANEYLQSSYAL--FQ-------YDPLLLNELGVVAFNKSDMQTAINHFQN 500

Query: 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602
           AL +       +   A   A +G  Y  L  Y  + D+    +     +    +      
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL----LLSTNDAN----V 552

Query: 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
              + L  + +     A+    E+ +I         P+ +     L    +
Sbjct: 553 HTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 44/428 (10%), Positives = 106/428 (24%), Gaps = 89/428 (20%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE-----GQEH-ALAKFAGHMQL-GDTYAM 320
              +A +YC  G Y  A  +L +                    L  + G + L G+T   
Sbjct: 120 AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
               +N+         ++ +            C    + +     F  A++  + AL + 
Sbjct: 180 RKDEKNANKLLMQDGGIKLE---------ASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 381 KDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440
                       A  +L+     T  +    +  L  ++     + +DA        +  
Sbjct: 231 AKCYE-------AFDQLVSNHLLTADEEWDLVLKLNYST----YSKEDAAFLRSLYMLKL 279

Query: 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500
              S          Y  ++   + +        + + +  AD      +  +  +     
Sbjct: 280 NKTSHEDELRRAEDYLSSINGLEKS--------SDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560
           L I                     +      E  +   +    +  + +           
Sbjct: 332 LEIDPY---------NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA--------- 373

Query: 561 EA--QMGVMYYMLGNYSDSYDSFKNAISK--------------LRAIGERKSAF------ 598
                +G+ Y  +   S++   F  + +                   GE   A       
Sbjct: 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433

Query: 599 ------FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652
                   +    +G+  +Q  +I  A E  + + ++              + + L    
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVA 485

Query: 653 DAIGREEK 660
                 + 
Sbjct: 486 FNKSDMQT 493

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 41/277 (14%), Positives = 74/277 (26%), Gaps = 69/277 (24%)

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL-----ADMYNRTGKLRESKSY 496
            L   +Y  A F  +K L    T    +   +A V+        A        L    S 
Sbjct: 94  ALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSA 151

Query: 497 C--------------ENALRIYEKPVPGVPPEEIASGLTDVSS--------------IYE 528
           C              + AL +  +  P    E+ A+ L                   +Y 
Sbjct: 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211

Query: 529 SMNELEQAIKLLQKALKIY-NDAPGQQSTVAG-----------------------IEAQM 564
           +++  ++A +  ++AL +           V+                          A +
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271

Query: 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624
             +Y +  N +   D  + A   L +I           L         R    + + +  
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSI--NGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329

Query: 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKL 661
           +   I         P  L VY     +    G + KL
Sbjct: 330 KILEI--------DPYNLDVYPLHLASLHESGEKNKL 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 51/399 (12%), Positives = 119/399 (29%), Gaps = 66/399 (16%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
           H++LG      GQL ++L  +   ++         DP         A   +   +   A 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL 57

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA---------SMT 421
                 + +  D         A  +R  G +   +G  + A +                 
Sbjct: 58  PDLTKVIALKMDF------TAARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109

Query: 422 MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481
             +    A+      S        + Y  A     K L        E     A +    A
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--------EVCVWDAELRELRA 161

Query: 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
           + + + G+ R++ S  + A ++  K        +       +S++Y  + + E ++  ++
Sbjct: 162 ECFIKEGEPRKAISDLKAASKL--KS-------DNTEAFYKISTLYYQLGDHELSLSEVR 212

Query: 542 KALKI---YNDAPGQQSTVAGIEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
           + LK+   +         V  +   +         G Y+D+   +++ +          +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVA 268

Query: 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656
            +   +  ++     +     EA+ +  E   +         PD +    + A  Y    
Sbjct: 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEE 320

Query: 657 R-EE------KLGTANPDVDDEKRRLAELLKEAGRVRSR 688
             +E           N +    +  L +  +   + + R
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 42/401 (10%), Positives = 114/401 (28%), Gaps = 64/401 (15%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
                + GQ  +A+     +++  P      ++ +A    + +    +  +G+ + +L  
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDP------DNYIA----YYRRATVFLAMGKSKAALPD 59

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN------- 383
            T  + +                       ++  +  EA+   +  L  +          
Sbjct: 60  LTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTY 442
                 +E    R   L      D+ AA+  L       +     DAE+        + +
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI----LEVCVWDAELR---ELRAECF 164

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
           +      +A    + A         +        F +++ +Y + G    S S     L+
Sbjct: 165 IKEGEPRKAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216

Query: 503 I---YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559
           +   +++        +  + L + +           A    +  +K     P        
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVR 273

Query: 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619
            + ++   +       ++       +       + +      AL     A +     +EA
Sbjct: 274 SKERICHCFSKDEKPVEAIRICSEVL-------QMEPDNV-NALKDRAEAYLIEEMYDEA 325

Query: 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
           ++ +E A+          + +   +   L      + + +K
Sbjct: 326 IQDYEAAQEH--------NENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 41/196 (20%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALA--------KFAGHMQLGDTY 318
            + I+ +Y  LG +  ++  + + +++        +H           K    ++  +  
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC----RYLAEAHVQALQFSEAQKFCQ 374
              G+  ++   Y + ++         +P V E        +     +  +  EA + C 
Sbjct: 245 IRDGRYTDATSKYESVMKT--------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 375 MALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASV 434
             L +  DN        A   R        +  ++ A++    A      N+ D ++   
Sbjct: 297 EVLQMEPDN------VNALKDR--AEAYLIEEMYDEAIQDYEAA---QEHNENDQQIRE- 344

Query: 435 DCSIGDTYLSLSRYDE 450
              +      L +  +
Sbjct: 345 --GLEKAQRLLKQSQK 358

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 51/397 (12%), Positives = 118/397 (29%), Gaps = 58/397 (14%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           ++A Y S+G   + + +  +++E+ P      +++       ++       LG+  +++ 
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKP------DYSKV----LLRRASANEGLGKFADAMF 94

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
             +        + G+ +    E             +  E       A     +  S    
Sbjct: 95  DLS-----VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL-STQPA 148

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           +E  D++       +        +  +  +    +N+ D E+   +        S   YD
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM--NGLSNLYKRSPESYD 206

Query: 450 EAGFAYQKALTAFK------TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           +A  ++ KA   F+          +    +A                  +    + A+ +
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266

Query: 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563
           + +           +    ++ I    N+  +      KALK+        S  + +   
Sbjct: 267 FPR----------VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYYH 309

Query: 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623
            G M ++L NY  +   F  A        E           Q+     +    ++   LF
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAK-------ELDPENI-FPYIQLACLAYRENKFDDCETLF 361

Query: 624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
            EA+           P+   V +  A         +K
Sbjct: 362 SEAKRK--------FPEAPEVPNFFAEILTDKNDFDK 390

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.3 bits (206), Expect = 6e-17
 Identities = 56/443 (12%), Positives = 133/443 (30%), Gaps = 74/443 (16%)

Query: 259 KPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318
           K   +  + L      +    +Y++AI     ++E+      +E  +     +  L   Y
Sbjct: 2   KD--KYALALKDKGNQFFRNKKYDDAIKYYNWALEL------KEDPVF----YSNLSACY 49

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK-FCQMAL 377
             +G L+  +   T  LE+         P   +     A A+    +F++A      ++L
Sbjct: 50  VSVGDLKKVVEMSTKALEL--------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSL 101

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
                + + AS+E   +R    L  +     +     +  A+ T             D  
Sbjct: 102 ---NGDFNDASIEPMLER---NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155

Query: 438 I-------GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                     ++  + + +     Y ++  A K                           
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL---SNLYKRSPESYDKADESF 212

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
            ++    E  L    +         I+  L          N+   A + ++KA++++   
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAIS--LEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270

Query: 551 PGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
                      +   M ++     + ++ Y+ F  A+       +  ++         G 
Sbjct: 271 ----------NSYIYMALIMADRNDSTEYYNYFDKALKL-----DSNNSS---VYYHRGQ 312

Query: 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTA---- 664
                 + ++A + F++A+ +         P+ +  Y  LA       + +   T     
Sbjct: 313 MNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEA 364

Query: 665 ---NPDVDDEKRRLAELLKEAGR 684
               P+  +     AE+L +   
Sbjct: 365 KRKFPEAPEVPNFFAEILTDKND 387

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 53/397 (13%), Positives = 122/397 (30%), Gaps = 51/397 (12%)

Query: 239 QKALELALRAAKS----FEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294
           ++       A  +        A  +   +  +      A +  + +        ++S E 
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186

Query: 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354
                     L K +                 +   +   L+   +   +   ++  +  
Sbjct: 187 DKELMNGLSNLYKRS----PESYDKADESFTKAARLFEEQLDKNNEDE-KLKEKLAISLE 241

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
           +             A +  + A+++            +       LI   + D      +
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRV-------NSYIYM--ALIMADRNDSTEYYNY 292

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
              A    +    D+  +SV    G     L  YD+AG  + KA         E  P   
Sbjct: 293 FDKA----L--KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK--------ELDPENI 338

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
             +++LA +  R  K  + ++    A R + +                 + I    N+ +
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPE---------APEVPNFFAEILTDKNDFD 389

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGI--EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
           +A+K    A+++ N   G    +A +  +A +      + N+ ++ +  + A        
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS------- 442

Query: 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +        A   +    +Q+  I+EA+ LFEE+  +
Sbjct: 443 KLDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 49/434 (11%), Positives = 121/434 (27%), Gaps = 86/434 (19%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                +   Y +++  +E+                    H++LG      GQL ++L  +
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------HLELGKKLLAAGQLADALSQF 49

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              ++         DP         A   +   +   A       + +  D         
Sbjct: 50  HAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------TA 95

Query: 392 AADRRLMGLICETKGDHEAALEHLVLA---------SMTMIANDQDAEVASVDCSIGDTY 442
           A  +R  G +   +G  + A +                   +    ++      S     
Sbjct: 96  ARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502
                Y  A     K L        E     A +    A+ + + G+ R++ S  + A +
Sbjct: 154 FGSGDYTAAIAFLDKIL--------EVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205

Query: 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVAG 559
           +                   +S++Y  + + E ++  +++ LK+   +         V  
Sbjct: 206 LKND---------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256

Query: 560 IEAQM--GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617
           +   +         G Y+D+   +++ +          + +   +  ++     +     
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFSKDEKPV 312

Query: 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREE-------KLGTANPDVDD 670
           EA+ +  E   +         PD +    + A  Y      +            N +   
Sbjct: 313 EAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364

Query: 671 EKRRLAELLKEAGR 684
            +  L +  +   +
Sbjct: 365 IREGLEKAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 48/393 (12%), Positives = 116/393 (29%), Gaps = 82/393 (20%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
           A ++ ++G+   A+P L + I++        +   A     +Q G      G+L+ +   
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKM------DFTAA----RLQRGHLLLKQGKLDEAEDD 116

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
           +   L+         +P   E      EA  Q ++  E Q+    AL+            
Sbjct: 117 FKKVLKS--------NPSENEE----KEAQSQLIKSDEMQRLRSQALNAFG--------- 155

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
                          GD+ AA+  L       +        A +     + ++      +
Sbjct: 156 --------------SGDYTAAIAFLDKI----LEVCVWD--AELRELRAECFIKEGEPRK 195

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI---YEKP 507
           A    + A         +        F +++ +Y + G    S S     L++   +++ 
Sbjct: 196 AISDLKAAS--------KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 247

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567
                  +  + L + +           A    +  +K     P         + ++   
Sbjct: 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHC 304

Query: 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEAR 627
           +       ++       +       + +      AL     A +     +EA++ +E A+
Sbjct: 305 FSKDEKPVEAIRVCSEVL-------QMEPDNV-NALKDRAEAYLIEEMYDEAIQDYETAQ 356

Query: 628 SILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
                     + +   +   L      + + +K
Sbjct: 357 EH--------NENDQQIREGLEKAQRLLKQSQK 381

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 42/364 (11%), Positives = 96/364 (26%), Gaps = 70/364 (19%)

Query: 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428
                   +D+  +N    S+ +      +G      G    AL     A    +  D D
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAA----V--DGD 56

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
            +           +L++ +   A     K +        +      +  ++   +  + G
Sbjct: 57  PDNYIAYYRRATVFLAMGKSKAALPDLTKVI--------QLKMDFTAARLQRGHLLLKQG 108

Query: 489 KLRESKSYCENALRI------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
           KL E++   +  L+        ++    +   +    L   +       +   AI  L K
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168

Query: 543 ALKI---------------------------YNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
            L++                              A   ++       ++  +YY LG++ 
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228

Query: 576 DSYDSFKNAIS----KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631
            S    +  +       R     K       L +     ++     +A   +E     ++
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MK 285

Query: 632 QECGPYHPDTLG-VYSNLAGTYDAIGREEKLGTA----------NPDVDDEKRRLAELLK 680
            E  P   +        +   +    +  +   A           PD  +  +  AE   
Sbjct: 286 TE--PSIAEYTVRSKERICHCFSKDEKPVE---AIRVCSEVLQMEPDNVNALKDRAEAYL 340

Query: 681 EAGR 684
               
Sbjct: 341 IEEM 344

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 33/292 (11%), Positives = 85/292 (29%), Gaps = 75/292 (25%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALA--------KFAGHMQLGDTY 318
            + I+ +Y  LG +  ++  + + +++        +H           K    ++  +  
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKKLNKLIESAEEL 267

Query: 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378
              G+  ++   Y + ++ +  +          +   +     +  +  EA + C   L 
Sbjct: 268 IRDGRYTDATSKYESVMKTEPSI----AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323

Query: 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438
           +  DN        A   R        +  ++ A++    A      N+ D ++      +
Sbjct: 324 MEPDN------VNALKDR--AEAYLIEEMYDEAIQDYETA---QEHNENDQQIRE---GL 369

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESK-SYC 497
                 L +  +  +     +                          R  K +E   +Y 
Sbjct: 370 EKAQRLLKQSQKRDYYKILGV-------------------------KRNAKKQEIIKAYR 404

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
           + AL+    P              D     E   + E+    +  A ++ +D
Sbjct: 405 KLALQW--HP--------------DNFQNEEEKKKAEKKFIDIAAAKEVLSD 440

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 43/193 (22%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           L++ A ELI  G     A            +      +   V     I   +    +  E
Sbjct: 260 LIESAEELIRDGR-YTDATSKYESV-----MKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 284 AIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342
           AI V  + +++ P      ++  A         + Y +    + ++  Y T  E      
Sbjct: 314 AIRVCSEVLQMEP------DNVNA----LKDRAEAYLIEEMYDEAIQDYETAQEH----- 358

Query: 343 GETDPRVGETCRYLAEAHVQALQFSEAQK------------------FCQMALDIHKDNG 384
              +    +    L +A     Q  +                     + ++AL  H DN 
Sbjct: 359 ---NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415

Query: 385 SPASLEEAADRRL 397
                ++ A+++ 
Sbjct: 416 QNEEEKKKAEKKF 428

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488
           A       ++G+T+  L  + +A  A+++ L   K  +  +  A    +  L + Y   G
Sbjct: 6   AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLG 63

Query: 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY- 547
           +   +  Y +  L +  + +        A     + + Y  + + E+AI    K L I  
Sbjct: 64  EFETASEYYKKTLLLARQ-LKDRA--VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120

Query: 548 --NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
              D  G+      +    G  Y  LGN+  +    +  +   R +G
Sbjct: 121 ELKDRIGEGRACWSL----GNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 81.4 bits (202), Expect = 3e-18
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 398 MGLICETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
           +G      G+   A+        +     D+ AE      ++G+ Y+ L  ++ A   Y+
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RIAYSNLGNAYIFLGEFETASEYYK 73

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           K L   +  K  +    A     L + Y       ++  Y    L I ++ +        
Sbjct: 74  KTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRI--GE 128

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
                 + + Y ++   +QA+   +K L+I 
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528
           +  A    F  L + +   G  R++    E  L I ++   G    E     +++ + Y 
Sbjct: 4   SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAE-RIAYSNLGNAYI 60

Query: 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588
            + E E A +  +K L +       ++  A     +G  Y +L +Y  + D     ++  
Sbjct: 61  FLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119

Query: 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
           + + +R     G A   +G A     + ++A+   E+   I  +
Sbjct: 120 QELKDRIGE--GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 343 GETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           G       G     L   H     F +A    +  L I K+ G  A+  E      +G  
Sbjct: 1   GPGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNA 58

Query: 402 CETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
               G+ E A E+      +     D+ A  A    S+G+TY  L  Y++A   + K L 
Sbjct: 59  YIFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
             +  + ++          L + Y   G   ++  + E  L I  +
Sbjct: 118 IAQ--ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 72.2 bits (178), Expect = 5e-15
 Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS 575
                 ++ + +  +     A+   ++ L I  +  G ++      + +G  Y  LG + 
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFE 66

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635
            + + +K  +   R + +R       +   +G          +A++   +  +I  QE  
Sbjct: 67  TASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELK 123

Query: 636 PYHPDTLGVYSNLAGTYDAIGREEK 660
                      +L   Y A+G  ++
Sbjct: 124 -DRIGEGRACWSLGNAYTALGNHDQ 147

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 66.0 bits (162), Expect = 7e-13
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN 326
               +   +  LG + +A+   EQ + I   E G + A      +  LG+ Y  LG+ E 
Sbjct: 11  AFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFGDKAAER--IAYSNLGNAYIFLGEFET 67

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +   Y   L + +Q+         ++C  L   +     + +A  +    L I ++    
Sbjct: 68  ASEYYKKTLLLARQLKDR--AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHL 415
               E      +G      G+H+ A+   
Sbjct: 126 IG--EGRACWSLGNAYTALGNHDQAMHFA 152

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 237 NPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293
           N + A+      L  AK F      K +    +    +   Y  LG++  A    ++++ 
Sbjct: 24  NFRDAVIAHEQRLLIAKEF----GDKAAE--RIAYSNLGNAYIFLGEFETASEYYKKTLL 77

Query: 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353
           +   +       A+      LG+TY +L   E ++  +   L + +++        G  C
Sbjct: 78  L-ARQLKDRAVEAQ--SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR--IGEGRAC 132

Query: 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384
             L  A+       +A  F +  L+I ++ G
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610
           PG ++        +G  +Y+LGN+ D+  + +  +   +  G++ +    +A + +G A 
Sbjct: 2   PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAY 59

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
           +       A E +++   +  Q              +L  TY  +   EK
Sbjct: 60  IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEK 107

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 50/340 (14%), Positives = 100/340 (29%), Gaps = 59/340 (17%)

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           LAE H     F    K   + ++    +        A+   +                  
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDPFH--------ASCLPVHIGTLVELNKANELFY-- 77

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKGENHPAVA 474
              S  ++       V+    ++G  YL +    + A     KA T              
Sbjct: 78  --LSHKLVDLYPSNPVSW--FAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYG 125

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
             ++     +    +  ++ +    A ++                +  +   Y   N  +
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQL--MK-------GCHLPMLYIGLEYGLTNNSK 176

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592
            A +   +AL I  + P             ++GV+ +  G +  +   F +A+ K++AIG
Sbjct: 177 LAERFFSQALSIAPEDP---------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

Query: 593 -ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651
            E     +   LN +G  C +     EA++   +A  +         P     YS +   
Sbjct: 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYI 279

Query: 652 YDAIGREEK----LGTA---NPDVDDEKRRLAELLKEAGR 684
           +  +G  E       TA     D       L   ++    
Sbjct: 280 HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 43/320 (13%), Positives = 102/320 (31%), Gaps = 47/320 (14%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           +  +A  +     +     +        V+E+   HA            T   L +    
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSV-----VMEKDPFHASC----LPVHIGTLVELNKANEL 75

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEA-HVQALQFSEAQKFCQMALDIHKDNGSP 386
                         L +  P    +   +     +   +   A+++   A  + K  G P
Sbjct: 76  FYLS--------HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-P 126

Query: 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
           A +         G     + +H+ A+     A        +   +      IG  Y   +
Sbjct: 127 AWI-------AYGHSFAVESEHDQAMAAYFTA----AQLMKGCHLPM--LYIGLEYGLTN 173

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506
               A   + +AL           P    V   +  +  + G+ + ++ +  +AL   + 
Sbjct: 174 NSKLAERFFSQAL--------SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566
               V  ++    L ++  +   + +  +A+   ++AL +    P      A   + +G 
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQN----ASTYSAIGY 278

Query: 567 MYYMLGNYSDSYDSFKNAIS 586
           ++ ++GN+ ++ D F  A+ 
Sbjct: 279 IHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 54/367 (14%), Positives = 109/367 (29%), Gaps = 71/367 (19%)

Query: 223 LLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282
           +++  A     + D  +   +L     +         P     + +H        L + N
Sbjct: 24  VVVSLAERHYYNCDF-KMCYKLTSVVMEKD-------PFHASCLPVH--IGTLVELNKAN 73

Query: 283 EAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQL-ENSLMCYTTGLEVQKQ 340
           E   +  + +++ P       + ++       +G  Y M+G   E++    +    +   
Sbjct: 74  ELFYLSHKLVDLYP------SNPVS----WFAVGCYYLMVGHKNEHARRYLSKATTL--- 120

Query: 341 VLGETDPRVGETCRYLAEAHVQALQ--FSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
                +   G    ++A  H  A++    +A      A  + K    P           +
Sbjct: 121 -----EKTYGPA--WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML--------YI 165

Query: 399 GLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           GL      + + A      A    ++   +D  V      +G        +  A   +  
Sbjct: 166 GLEYGLTNNSKLAERFFSQA----LSIAPEDPFVM---HEVGVVAFQNGEWKTAEKWFLD 218

Query: 458 ALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           AL   K    E        +   L  +  +  K  E+  Y   AL +         P+  
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQN- 269

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ--MGVMYYMLGNY 574
           AS  + +  I+  M   E A+     AL +  D            +   +G    M    
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT---------FSVTMLGHCIEMYIGD 320

Query: 575 SDSYDSF 581
           S++Y   
Sbjct: 321 SEAYIGA 327

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 49/333 (14%), Positives = 98/333 (29%), Gaps = 56/333 (16%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                  L    EA    E   +  P      E   A       LG T A   +   +++
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAP------EREEA----WRSLGLTQAENEKDGLAII 76

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI-------HKD 382
                  +        DP+       LA +H      + A    +  L            
Sbjct: 77  ALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128

Query: 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDT 441
           N       +  + +          ++      L  A    +  N  DA++     S+G  
Sbjct: 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA----LEMNPNDAQLH---ASLGVL 181

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           Y   + YD A    ++A+        E  P  A ++ +L        + +E+      AL
Sbjct: 182 YNLSNNYDSAAANLRRAV--------ELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVA 558
            I   P            + +++  Y +M++ + A K L +A+ +        G+ S  A
Sbjct: 234 DI--NP-------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284

Query: 559 G--IEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589
              +     ++  ++        ++   +    
Sbjct: 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 55/234 (23%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T     +   A  A   A            P   +V   LA  +        + +   
Sbjct: 62  GLTQAENEKDGLAIIALNHAR--------MLDPKDIAVHAALAVSHTNEHNANAALASLR 113

Query: 499 NALRIYEK------PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAP 551
             L    +             +     +      + + NE  +   LL  AL++  NDA 
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA- 172

Query: 552 GQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVAL 603
                    +    +GV+Y +  NY  +  + + A+       E +          G  L
Sbjct: 173 ---------QLHASLGVLYNLSNNYDSAAANLRRAV-------ELRPDDAQLWNKLGATL 216

Query: 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
                    R    EA++ +  A  I        +P  + V  N+A +Y  + +
Sbjct: 217 ANGN-----RP--QEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQ 255

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 46/377 (12%), Positives = 93/377 (24%), Gaps = 80/377 (21%)

Query: 279 GQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338
           G   +           P +     +        M+ G +   L  L  + + +    +  
Sbjct: 1   GHMLQNNTDYPFEANNPYM-----YHEN----PMEEGLSMLKLANLAEAALAFEAVCQA- 50

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL- 397
                   P   E  R L     +  +   A      A  +   +               
Sbjct: 51  -------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------IAVHAA 94

Query: 398 MGLICETKGDHEAALEHLVLA---------SMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
           + +    + +  AAL  L              ++              S    + + + Y
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508
            E       AL        E +P  A +   L  +YN +     + +    A+ +  +P 
Sbjct: 155 RECRTLLHAAL--------EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RP- 203

Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI--------YNDAPGQQSTVAGI 560
                 + A     + +   + N  ++A+    +AL I        YN            
Sbjct: 204 ------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN------------ 245

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAIS----KLRAIGERKSAFFGVALNQMGLACVQRYSI 616
              M V Y  +  Y  +      AI          GE          +   +        
Sbjct: 246 ---MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302

Query: 617 NEAVELFEEARSILEQE 633
           +     + +      +E
Sbjct: 303 DLVELTYAQNVEPFAKE 319

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 34/232 (14%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           +  L    +  +   +       ++  + +      + +  +Y E   +L  ++E+ P  
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-- 169

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
                 A      H  LG  Y +    +++       +E+         P   +    L 
Sbjct: 170 ----NDAQL----HASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLG 213

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                  +  EA      ALDI+                 M +       ++ A + LV 
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGY------VRV--MYNMAVSYSNMSQYDLAAKQLVR 265

Query: 418 A------SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
           A        T           S+          ++R D     Y + +  F 
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 9/193 (4%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           +    +    QLE +   Y    E              +             +  EA ++
Sbjct: 41  KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH--AAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 373 CQMALDIHKDNGSPASLEEAADR-RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV 431
            + A  ++ +NG+P   + AA      G + E   D   A+     A+      ++  + 
Sbjct: 99  IEKASVMYVENGTP---DTAAMALDRAGKLME-PLDLSKAVHLYQQAAAVFENEERLRQA 154

Query: 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491
           A +        +   ++DEA  + QK  + +   + EN+P      +    +        
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 492 ESKSYCENALRIY 504
            ++     +  I 
Sbjct: 213 AAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 10/228 (4%)

Query: 362 QALQFSEAQKFCQMALDIHKDN--GSPASLEEAADR-RLMGLICETKGDHEAALEHLVLA 418
            A + SEA +    A    K +        + AA       +  +     E A +  +  
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62

Query: 419 SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478
           +     N      A      G     L R  EA    +KA   +   +       A    
Sbjct: 63  AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV--ENGTPDTAAMALD 120

Query: 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538
           R   +      L ++    + A  ++E         + A  +   S +     + ++A  
Sbjct: 121 RAGKLME-PLDLSKAVHLYQQAAAVFEN---EERLRQAAELIGKASRLLVRQQKFDEAAA 176

Query: 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            LQK   +Y +      T         ++     +Y  +    + + S
Sbjct: 177 SLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 11/179 (6%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             ++A +  L+ A++     N +              +   L +  EA+  +E++  +  
Sbjct: 51  QLEQAKDAYLQEAEAHA---NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-Y 106

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
           +E G     A      + G        L  ++  Y     V +    E   +  E     
Sbjct: 107 VENGTPDTAAMA--LDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--EERLRQAAELIGKA 161

Query: 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           +   V+  +F EA    Q    ++K+  +  +  +        L+   + D+ AA + +
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA--QVLVQLHRADYVAAQKCV 218

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 13/150 (8%)

Query: 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEA 284
           L +A +L+   D   KA+ L  +AA  FE     +        +   + +     +++EA
Sbjct: 119 LDRAGKLMEPLD-LSKAVHLYQQAAAVFE--NEERLRQA-AELIGKASRLLVRQQKFDEA 174

Query: 285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344
              L++   +   E        K    +              +  C      +     G 
Sbjct: 175 AASLQKEKSM-YKEMENYPTCYKK--CIAQVLVQLHRADYVAAQKCVRESYSIP----GF 227

Query: 345 TDPRVGETCRYLAEAHVQ--ALQFSEAQKF 372
           +          L +A+ +    Q     + 
Sbjct: 228 SGSEDCAALEDLLQAYDEQDEEQLLRVCRS 257

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 50/438 (11%), Positives = 95/438 (21%), Gaps = 78/438 (17%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           +Q   + S     ++ALE   R            P  + V+ +        +L      +
Sbjct: 70  EQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTP--QQVVAIASHDGGKQALETVQRLL 126

Query: 286 PVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344
           PVL Q+  + P      E  +A              L  ++  L        +       
Sbjct: 127 PVLCQAHGLTP------EQVVA----IASHDGGKQALETVQALLPVLCQAHGL------- 169

Query: 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
             P                            A  +                   G   + 
Sbjct: 170 -TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ--------VVAIASNGGGKQA 220

Query: 405 KGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
               +  L  L  A         Q     +   S G    +L           +A     
Sbjct: 221 LETVQRLLPVLCQA----HGLTPQQVVAIA---SNGGGKQALETVQRLLPVLCQAH---- 269

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
                  P         +        ++        A  +   P                
Sbjct: 270 ----GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL--TP--------------QQ 309

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
                S    +QA++ +Q+ L +   A G         A        L            
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A                VA+   G       ++   + +  +A  +         P+ + 
Sbjct: 370 AH-------GLTPEQV-VAIASNGGGKQALETVQRLLPVLCQAHGL--------TPEQVV 413

Query: 644 VYSNLAGTYDAIGREEKL 661
             ++  G   A+   ++L
Sbjct: 414 AIASHDGGKQALETVQRL 431

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 57/462 (12%), Positives = 103/462 (22%), Gaps = 92/462 (19%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
           +Q   + S     ++ALE   R            P  E V+ +        +L      +
Sbjct: 104 QQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTP--EQVVAIASHDGGKQALETVQALL 160

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           PVL Q+  +       E  +A        G     L  ++  L        +        
Sbjct: 161 PVLCQAHGLT-----PEQVVA----IASNGGGKQALETVQRLLPVLCQAHGL-------- 203

Query: 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
            P+                           A  +            A      G   +  
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ------VVAIASN--GGGKQAL 255

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
              +  L  L  A            VA    S      +L           +A       
Sbjct: 256 ETVQRLLPVLCQA----HGLTPQQVVA--IASNSGGKQALETVQRLLPVLCQAH------ 303

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
                P                  ++        A  +   P       +    +     
Sbjct: 304 --GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL--TP-------QQVVAIASHDG 352

Query: 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585
             +++  +++ + +L +A  +    P Q   +A      G     L            A 
Sbjct: 353 GKQALETVQRLLPVLCQAHGL---TPEQVVAIAS----NGGGKQALETVQRLLPVLCQAH 405

Query: 586 S--------------KLRAIGERKSAF------------FGVALNQMGLACVQRYSINEA 619
                            +A+   +                 VA+   G       SI   
Sbjct: 406 GLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQ 465

Query: 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKL 661
           +   + A + L         D L   + L G   A+   +KL
Sbjct: 466 LSRPDPALAAL-------TNDHLVALACL-GGRPALDAVKKL 499

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 41/338 (12%), Positives = 78/338 (23%), Gaps = 56/338 (16%)

Query: 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHL 415
           L  A    +   EA    + AL     N +P  +   A         +     +  L  L
Sbjct: 39  LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH---DGGKQALETVQRLLPVL 95

Query: 416 VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475
             A        Q     +   S      +L           +A            P    
Sbjct: 96  CQA---HGLTPQQVVAIA---SHDGGKQALETVQRLLPVLCQAH--------GLTPEQVV 141

Query: 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535
                         ++        A  +         PE++ +          S    +Q
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLT--------PEQVVA--------IASNGGGKQ 185

Query: 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595
           A++ +Q+ L +   A G         A  G     L            A           
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLT 238

Query: 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655
                VA+   G       ++   + +  +A  +         P  +   ++ +G   A+
Sbjct: 239 PQQV-VAIASNGGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIASNSGGKQAL 289

Query: 656 GREEKLGTA-------NPDVDDEKRRLAELLKEAGRVR 686
              ++L           P             +    V+
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 46/332 (13%), Positives = 94/332 (28%), Gaps = 53/332 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                   G    A+ + E +++  P      +H  A       LG T A   Q   ++ 
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDP------KHMEA----WQYLGTTQAENEQELLAIS 119

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD------- 382
                LE+         P        LA +        +A +  +  L            
Sbjct: 120 ALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171

Query: 383 -NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT 441
                        +R++G +           E  + A    +  D  +    V C +G  
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVL 226

Query: 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENAL 501
           +     YD+A   +  AL           P    ++ +L        +  E+ +    AL
Sbjct: 227 FNLSGEYDKAVDCFTAAL--------SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278

Query: 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561
            +  +P              ++     ++    +A++   +AL +   + G +     + 
Sbjct: 279 EL--QP-------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329

Query: 562 AQ----MGVMYYMLGNYSDSYDSFKNAISKLR 589
                 + +   MLG       +    +S L 
Sbjct: 330 ENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 57/345 (16%), Positives = 105/345 (30%), Gaps = 70/345 (20%)

Query: 347 PRVGETCRYLAEAHVQALQFSE-AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405
             + E  +  AEAH     + +             ++N     L +       GL    +
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEEN----PLRDHPQPFEEGLRRLQE 77

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
           GD   A+     A    +   QD +       +G T     +   A  A ++ L      
Sbjct: 78  GDLPNAVLLFEAA----VQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCL------ 125

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
             E  P   +  + LA  +      R++     + LR        V P E  +G   +  
Sbjct: 126 --ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183

Query: 526 IYESMNEL------EQAIKLLQKALKI---YNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
               +  L       +  +L   A+++     D   Q          +GV++ + G Y  
Sbjct: 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG--------LGVLFNLSGEYDK 235

Query: 577 SYDSFKNAISK--------------LRAIGERKSAF------------FGVALNQMGLAC 610
           + D F  A+S               L    + + A             +  +   +G++C
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655
           +   +  EAVE F EA ++           + G         + I
Sbjct: 296 INLGAHREAVEHFLEALNM--------QRKSRGPRGEGGAMSENI 332

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 43/298 (14%), Positives = 92/298 (30%), Gaps = 48/298 (16%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
             +        Q   AI  L + +E+ P      ++  A     M L  ++        +
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKP------DNQTA----LMALAVSFTNESLQRQA 151

Query: 328 LMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379
                  L               G     +G + R L      +  F E ++    A+ +
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS-LFLEVKELFLAAVRL 210

Query: 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSI 438
              +       +   +  +G++    G+++ A++    A    ++    D  + +    +
Sbjct: 211 DPTS------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA----LSVRPNDYLLWN---KL 257

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T  + ++ +EA  AY++AL        E  P        L       G  RE+  +  
Sbjct: 258 GATLANGNQSEEAVAAYRRAL--------ELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSS----IYESMNELEQAIKLLQKALKIYNDAPG 552
            AL +  +     P  E  +   ++ S        + + +       + L       G
Sbjct: 310 EALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 39/235 (16%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI-PVI 297
           +  L      A        G     L     ++ ++  S   + E   +   ++ + P  
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDP-- 212

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
                           LG  + + G+ + ++ C+T  L V         P        L 
Sbjct: 213 ----TSIDPDV--QCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLG 258

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                  Q  EA    + AL++            +  R  +G+ C   G H  A+EH + 
Sbjct: 259 ATLANGNQSEEAVAAYRRALELQPGY------IRS--RYNLGISCINLGAHREAVEHFLE 310

Query: 418 ASMTMIANDQDAEVASVDCSI---------GDTYLSLSRYDEAGFAYQKALTAFK 463
           A    +   + +     +                  L + D  G A  + L+   
Sbjct: 311 A----LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 30/268 (11%), Positives = 69/268 (25%), Gaps = 42/268 (15%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
                    ++  A+E          A   ++            Y  L++YD A    + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKL----EAKKYNSPYIY--NRRAVCYYELAKYDLAQKDIET 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
             +           A ++ F     +  + G+   +    + A+                
Sbjct: 63  YFSKVNAT-----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DT-------TRL 108

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYS 575
                + S + +      AI+ ++K ++     P         +   ++G  YY    Y 
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP---------KVFYELGQAYYYNKEYV 159

Query: 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN---EAVELFEEARSILEQ 632
            +  SF   +               +       A   +        A   +E+   +   
Sbjct: 160 KADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIGREEK 660
               Y  + +     +A  Y     + K
Sbjct: 212 GGAKYKDELIEANEYIAYYYTINRDKVK 239

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 24/239 (10%), Positives = 58/239 (24%), Gaps = 37/239 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
            A  Y  L +Y+ A   +E       +   +  +          G      GQ   ++  
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFS--KVNATKAKSAD----FEYYGKILMKKGQDSLAIQQ 96

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
           Y   ++         D    +    +         F  A ++ +  +     +       
Sbjct: 97  YQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------- 141

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA---NDQDAEVASVDCSIGDTYLSL-- 445
                  +G       ++  A    V      +    N                  +   
Sbjct: 142 -PKVFYELGQAYYYNKEYVKADSSFVKV----LELKPNIYIG-----YLWRARANAAQDP 191

Query: 446 -SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
            ++   A   Y+K +        +    +      +A  Y       ++ +  +N L +
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 22/142 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLEN--- 326
           +   Y    +Y +A     + +E+ P         +     ++      A          
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKP------NIYIG----YLWRARANAAQDPDTKQGL 197

Query: 327 SLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386
           +   Y   +EV      +    + E   Y+A  +       +A    +  L +   N   
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN--- 254

Query: 387 ASLEEAADRRLMGLICETKGDH 408
              ++A     + +  E    H
Sbjct: 255 ---KKA--IDGLKMKLEHHHHH 271

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 45/321 (14%), Positives = 88/321 (27%), Gaps = 43/321 (13%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
                   G     I  +E +I   P        A A       LG T A     + +++
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDP------GDAEA----WQFLGITQAENENEQAAIV 120

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
                LE+         P   +    LA ++       +A +  +  +  +         
Sbjct: 121 ALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 390 EEAADRRL--MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
           ++ +      M          E   E  + A       + D     +   +G  +     
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEA----AHQNGDMIDPDLQTGLGVLFHLSGE 228

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507
           ++ A  A+  AL           P   S++ RL        +  E+      AL I  +P
Sbjct: 229 FNRAIDAFNAAL--------TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QP 278

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQMGV 566
                         ++     ++    +A+     AL +       QQ     I   +  
Sbjct: 279 -------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331

Query: 567 MYYMLGNYSDSYDSFKNAISK 587
              +  +  D  + F+ A   
Sbjct: 332 ALRIALSLMDQPELFQAANLG 352

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 47/287 (16%), Positives = 90/287 (31%), Gaps = 51/287 (17%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G T         A  A Q+ L        E  P      + LA  Y  T   +++    +
Sbjct: 106 GITQAENENEQAAIVALQRCL--------ELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
           N ++   K         +         +   M++      +L+   ++Y +A  Q   + 
Sbjct: 158 NWIKQNPKYK------YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211

Query: 559 GIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF------GVALNQMGLAC 610
             + Q  +GV++++ G ++ + D+F  A+         +   +      G  L       
Sbjct: 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAAL-------TVRPEDYSLWNRLGATLANGD--- 261

Query: 611 VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----EEKLGTA-- 664
             R    EAVE +  A  I         P  +    NL  +   +G          TA  
Sbjct: 262 --RS--EEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

Query: 665 -NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSRVNNDGIEV 710
                 ++++     +        R A SL    +     N   ++V
Sbjct: 310 LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 49/374 (13%), Positives = 108/374 (28%), Gaps = 78/374 (20%)

Query: 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
             Q    +   E+           E+    + G  + G      G L  +++        
Sbjct: 40  EAQNQVTVSASEKGYYFH-----TENPFKDWPGAFEEGLKRLKEGDLPVTILFM------ 88

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397
            +  +   DP   E  ++L     +      A    Q  L++  +N             +
Sbjct: 89  -EAAI-LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN---------LKALM 137

Query: 398 -MGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            + +        + A E L       I  N +   +     +   +     R  ++    
Sbjct: 138 ALAVSYTNTSHQQDACEALKNW----IKQNPKYKYLV---KNKKGSPGLTRRMSKSPVDS 190

Query: 456 QKALTA----FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
                      +            +   L  +++ +G+   +      AL +  +P    
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RP---- 244

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI--------YNDAPGQQSTVAGIEAQ 563
              E  S    + +   + +  E+A++   +AL+I        YN               
Sbjct: 245 ---EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--------------- 286

Query: 564 MGVMYYMLGNYSDSYDSFKNAIS-----------KLRAIGERKSAFFGVALNQMGLACVQ 612
           +G+    LG Y ++  +F  A+S              AI     A   +AL+ M    + 
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346

Query: 613 RYSINEAVELFEEA 626
           + +    +++   A
Sbjct: 347 QAANLGDLDVLLRA 360

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 36/256 (14%), Positives = 77/256 (30%), Gaps = 41/256 (16%)

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
            +++EA     +A T ++    +        F++ AD   + G   E+ +    A + ++
Sbjct: 31  YKFEEAADLCVQAATIYR--LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK 88

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                                         A+  L+ A++I+    GQ    A  + ++G
Sbjct: 89  S-----------------------GGNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELG 124

Query: 566 VMYYM-LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624
            +    L +Y+ + D ++ A            +       +            EA +++ 
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK--CFIKCADLKALDGQYIEASDIYS 182

Query: 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGR 684
           +                   +        A            D     R L E   E   
Sbjct: 183 KLIK-SSMGNRLSQWSLKDYFLKKGLCQLAAT----------DAVAAARTLQEGQSEDPN 231

Query: 685 -VRSRKAQSLETLLDA 699
              SR++  L++L+DA
Sbjct: 232 FADSRESNFLKSLIDA 247

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 62.7 bits (152), Expect = 8e-11
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 8/201 (3%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           E A +       Y      + AG ++ KA    K     N     + +V     +   G 
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGN 92

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYN 548
              +    ENA++I+            A+   ++  I E+ +++  +AI   + A + Y 
Sbjct: 93  SVNAVDSLENAIQIFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149

Query: 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608
                 +       +   +  + G Y ++ D +   I         + +     L   GL
Sbjct: 150 Q-DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK-KGL 207

Query: 609 ACVQRYSINEAVELFEEARSI 629
             +       A    +E +S 
Sbjct: 208 CQLAATDAVAAARTLQEGQSE 228

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 56.6 bits (136), Expect = 7e-09
 Identities = 33/238 (13%), Positives = 68/238 (28%), Gaps = 14/238 (5%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           Q    Y +  +L  +   +    + QK+   E +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE--AGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 373 CQMALDIHKDNGSPASLEEAADR-RLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE 430
            + A+ I    G        A+    +G I E    D+  A++   LA      +   A 
Sbjct: 100 LENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                    D      +Y EA   Y K + +   N+     ++   F++           
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDA 215

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKI 546
             +    +          P       ++ L  +       +  +L +  K     +++
Sbjct: 216 VAAARTLQEGQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 34/282 (12%), Positives = 77/282 (27%), Gaps = 57/282 (20%)

Query: 274 IYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYT 332
            +    Q++EAI    ++ E+                            G+ E ++    
Sbjct: 14  KFYKARQFDEAIEHYNKAWELHK-----------DITYLNNRAAAEYEKGEYETAISTLN 62

Query: 333 TGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
             +E            +    + ++++  +           +  ++ ++ +         
Sbjct: 63  DAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-------LT 107

Query: 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEA 451
             R     I     + E  L+            N + AE A      G  Y + S +  A
Sbjct: 108 EHRT--ADILTKLRNAEKELKKAEAE----AYVNPEKAEEAR---LEGKEYFTKSDWPNA 158

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
             AY + +        +  P  A  +   A    +     E+ + C  A+     P    
Sbjct: 159 VKAYTEMI--------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DP---- 204

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---YNDA 550
                       ++   ++ E   A++ L  A       N+ 
Sbjct: 205 ---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 42/233 (18%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
           AA     G+Y  AI  L  ++E      G+E        +  +  ++A +G   + L   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQ-----GREMRAD----YKVISKSFARIGNAYHKLGDL 95

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              +E  ++ L E   R  +    L           +  K  +    ++ +        E
Sbjct: 96  KKTIEYYQKSLTE--HRTADILTKLR-------NAEKELKKAEAEAYVNPEK------AE 140

Query: 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDE 450
            A  RL G    TK D   A++         I    +DA   S   +       L  + E
Sbjct: 141 EA--RLEGKEYFTKSDWPNAVKAYTEM----IKRAPEDARGYS---NRAAALAKLMSFPE 191

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
           A     KA+        E  P     ++R A       +   +    + A   
Sbjct: 192 AIADCNKAI--------EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 28/219 (12%), Positives = 57/219 (26%), Gaps = 42/219 (19%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+ +    ++DEA   Y KA      +         +     A      G+   + S   
Sbjct: 12  GNKFYKARQFDEAIEHYNKAW-ELHKD--------ITYLNNRAAAEYEKGEYETAISTLN 62

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
           +A+             E+ +    +S  +  +      +  L+K ++ Y  +        
Sbjct: 63  DAVEQ--GR-------EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL------- 106

Query: 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618
             E +   +   L N        +             +          G     +     
Sbjct: 107 -TEHRTADILTKLRNAEKELKKAEAEA--------YVNPEKAEEARLEGKEYFTKSDWPN 157

Query: 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657
           AV+ + E             P+    YSN A     +  
Sbjct: 158 AVKAYTEMIKR--------APEDARGYSNRAAALAKLMS 188

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 31/284 (10%), Positives = 71/284 (25%), Gaps = 64/284 (22%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
               G+ +    Q + ++  Y    E+ K +               A A  +  ++  A 
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDI---------TYLNNRAAAEYEKGEYETAI 58

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430
                A++  ++          AD +++       G+    L  L       I   Q + 
Sbjct: 59  STLNDAVEQGREM--------RADYKVISKSFARIGNAYHKLGDLKKT----IEYYQKSL 106

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
                    D    L   ++     +             +P  A         Y      
Sbjct: 107 TEH---RTADILTKLRNAEKELKKAEAEA--------YVNPEKAEEARLEGKEYFTKSDW 155

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI---- 546
             +       ++    P       E A G ++ ++    +    +AI    KA++     
Sbjct: 156 PNAVKAYTEMIKR--AP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

Query: 547 ----YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                                       +  Y+ + ++   A +
Sbjct: 207 VRAYIR---------------KATAQIAVKEYASALETLDAART 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 28/267 (10%), Positives = 64/267 (23%), Gaps = 53/267 (19%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
                  +G H           +       +A        +G  YL     ++A    +K
Sbjct: 10  HSSGLVPRGSHMGDQ-----NPLKTDKGRDEA--RDAYIQLGLGYLQRGNTEQAKVPLRK 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           AL        E  P+ A     LA ++    + + +      AL               A
Sbjct: 63  AL--------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DS-------RNA 105

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALK--IYNDAPGQQSTVAGIEAQ--MGVMYYMLGN 573
             L +           E+A + L +A +  +Y +                +G++   +  
Sbjct: 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS---------RVFENLGLVSLQMKK 156

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
            + + + F+ ++                   +M     +      A + ++         
Sbjct: 157 PAQAKEYFEKSL-------RLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG---- 204

Query: 634 CGPYHPDTLGVYSNLAGTYDAIGREEK 660
                                    + 
Sbjct: 205 ----GGQNARSLLLGIRLAKVFEDRDT 227

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 23/142 (16%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                   +Y EA   L ++ +  +     E +         LG     + +   +   +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL---YPERSRV----FENLGLVSLQMKKPAQAKEYF 164

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              L +        +         +A+   +  ++  A+++  +       N    SL  
Sbjct: 165 EKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN--ARSL-- 212

Query: 392 AADRRLMGLICETKGDHEAALE 413
                L   + +   D + A  
Sbjct: 213 ----LLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 36/281 (12%), Positives = 78/281 (27%), Gaps = 82/281 (29%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
              Y   G   +A   L +++EI P        A A    H  L   +    + +     
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDP------SSADA----HAALAVVFQTEMEPK----- 88

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390
                                                 A +  + AL     N       
Sbjct: 89  -------------------------------------LADEEYRKALASDSRNA------ 105

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDE 450
                   G     +  +E A + L+ A      +    E + V  ++G   L + +  +
Sbjct: 106 RV--LNNYGGFLYEQKRYEEAYQRLLEA----SQDTLYPERSRVFENLGLVSLQMKKPAQ 159

Query: 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510
           A   ++K+L          +    SV + +AD+  +  +   ++ Y +   +        
Sbjct: 160 AKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GG--- 206

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551
               + A  L     + +   + + A     +  ++Y  + 
Sbjct: 207 ----QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 36/264 (13%), Positives = 79/264 (29%), Gaps = 57/264 (21%)

Query: 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI-GDTYLSLSRYDEAGFAYQKAL 459
           +  +   H  +               + + +AS+              Y++A  A+ KA+
Sbjct: 1   MGSSHHHHHHSSG----------LVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI 50

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519
                   E +   A  ++  A++ +   +L  + ++ + AL +             A+ 
Sbjct: 51  --------EENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DS-------SAATA 93

Query: 520 LTDVSSIYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSD 576
                ++Y      ++A  + +KAL+    +           +    +G +   L     
Sbjct: 94  YYGAGNVYVVKEMYKEAKDMFEKALRAGMENG----------DLFYMLGTVLVKLEQPKL 143

Query: 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
           +    + A+       E        A  Q G+       ++EA+  F             
Sbjct: 144 ALPYLQRAV-------ELNENDT-EARFQFGMCLANEGMLDEALSQFAAVTEQ------- 188

Query: 637 YHPDTLGVYSNLAGTYDAIGREEK 660
             P     + N   TY      EK
Sbjct: 189 -DPGHADAFYNAGVTYAYKENREK 211

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 35/308 (11%), Positives = 81/308 (26%), Gaps = 78/308 (25%)

Query: 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
           S   ++ +  ++ +   +         ++       Q     +  G  E +   +T  +E
Sbjct: 4   SHHHHHHSSGLVPRGSHM--------ASMT----GGQQMGRGSEFGDYEKAAEAFTKAIE 51

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD------NGSPASLE 390
                    +          A       +   A  F   AL++                 
Sbjct: 52  E--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG------- 96

Query: 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYD 449
                   G +   K  ++ A +    A    +    ++ ++      +G   + L +  
Sbjct: 97  -------AGNVYVVKEMYKEAKDMFEKA----LRAGMENGDLF---YMLGTVLVKLEQPK 142

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
            A    Q+A+        E +        +        G L E+ S           P  
Sbjct: 143 LALPYLQRAV--------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DP-- 190

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI-YNDAPGQQSTVAGIEAQ--MGV 566
                  A    +    Y      E+A+++L KA+ I  +             A     +
Sbjct: 191 -----GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM----------LALHAKKL 235

Query: 567 MYYMLGNY 574
           + +   ++
Sbjct: 236 LGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 44/225 (19%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
            + +A +    A++ +K++        A        +  +  + E AL     A    + 
Sbjct: 38  DYEKAAEAFTKAIEENKED--------AIPYINFANLLSSVNELERALAFYDKA----LE 85

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
            D  A  A      G+ Y+    Y EA   ++KAL                +F  L  + 
Sbjct: 86  LDSSAATAY--YGAGNVYVVKEMYKEAKDMFEKAL-RAG-------MENGDLFYMLGTVL 135

Query: 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544
            +  + + +  Y + A+ +                         +   L++A+       
Sbjct: 136 VKLEQPKLALPYLQRAVEL--NE-------NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 545 KIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAIS 586
           +     A          +A    GV Y    N   + +    AI 
Sbjct: 187 EQDPGHA----------DAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 35/191 (18%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
            A +  S+ +   A+   ++++E+          A A    +   G+ Y +    + +  
Sbjct: 63  FANLLSSVNELERALAFYDKALELDS------SAATA----YYGAGNVYVVKEMYKEAKD 112

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
            +   L              G+    L    V+  Q   A  + Q A+++++++      
Sbjct: 113 MFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------ 158

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRY 448
            EA  +   G+    +G  + AL             +   A+      + G TY      
Sbjct: 159 TEARFQF--GMCLANEGMLDEALSQFAAV----TEQDPGHADAFY---NAGVTYAYKENR 209

Query: 449 DEAGFAYQKAL 459
           ++A     KA+
Sbjct: 210 EKALEMLDKAI 220

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.8 bits (141), Expect = 8e-10
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 40/210 (19%)

Query: 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           + ND   +V   D   G ++    RY +A    ++          +       V + L  
Sbjct: 1   MGNDDIRQVYYRD--KGISHAKAGRYSQAVMLLEQVY--------DADAFDVDVALHLGI 50

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
            Y +TG +       E +L     P       +     T +   Y  + + + A+ LL K
Sbjct: 51  AYVKTGAVDRGTELLERSLAD--AP-------DNVKVATVLGLTYVQVQKYDLAVPLLIK 101

Query: 543 ALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF 599
             +    +             +  +GV    LG + ++ DSFK A+         +    
Sbjct: 102 VAEANPINF----------NVRFRLGVALDNLGRFDEAIDSFKIAL-------GLRPNEG 144

Query: 600 GVALNQMGLACVQRYSINEAVELFEEARSI 629
                 +  +  Q     EA+  F++A  +
Sbjct: 145 K-VHRAIAFSYEQMGRHEEALPHFKKANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 29/138 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            +       QA+ LL++       D           +    +G+ Y   G      +  +
Sbjct: 17  SHAKAGRYSQAVMLLEQVYDADAFDV----------DVALHLGIAYVKTGAVDRGTELLE 66

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            ++                    +GL  VQ    + AV L  +            +P   
Sbjct: 67  RSL-------ADAPDNVK-VATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINF 110

Query: 643 GVYSNLAGTYDAIGREEK 660
            V   L    D +GR ++
Sbjct: 111 NVRFRLGVALDNLGRFDE 128

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.9 bits (110), Expect = 9e-06
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
               +   G+Y++A+ +LEQ  +                   + LG  Y   G ++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADA------FDVDV----ALHLGIAYVKTGAVDRGTE 63

Query: 330 CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389
                L           P   +    L   +VQ  ++  A        + +  N      
Sbjct: 64  LLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------ 109

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRY 448
                R  +G+  +  G  + A++   +A    +     + +V     +I  +Y  + R+
Sbjct: 110 FNVRFR--LGVALDNLGRFDEAIDSFKIA----LGLRPNEGKVHR---AIAFSYEQMGRH 160

Query: 449 DEAGFAYQKAL 459
           +EA   ++KA 
Sbjct: 161 EEALPHFKKAN 171

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 27/216 (12%), Positives = 53/216 (24%), Gaps = 8/216 (3%)

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
           +     +    D E                RY E        L   + +           
Sbjct: 60  IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--EFQQFLQW 117

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
              +A    +           +  L      +       I + +   ++IY     L++ 
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI---ANIYAENGYLKKG 174

Query: 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596
           I L ++ LK        +     +        Y+   Y +S      AI     I     
Sbjct: 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233

Query: 597 AFFGVALNQMGLACVQRYSINEAVE-LFEEARSILE 631
              G    Q G    +       +E  +++A    +
Sbjct: 234 -LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 19/177 (10%), Positives = 48/177 (27%), Gaps = 4/177 (2%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +      K D+E  +  L       +      +   ++ +I + Y       +    +++
Sbjct: 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
            L   +    +N      V    A       +  ES      A+ I  +         I 
Sbjct: 181 ILKQLE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIG 236

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
                       +   E  I+   K    + D     +    +  ++  + +   ++
Sbjct: 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHHH 293

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 47/258 (18%)

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
           E+  + +        QL   Y        +       L+         DP+        A
Sbjct: 2   EKANQVSNI----KTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRA 49

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-CETKGDHEAALEHLV 416
           E +       +AQ+  + AL I  D+       E  +    G   C        ++ +  
Sbjct: 50  EIYQYLKVNDKAQESFRQALSIKPDSA------EINNN--YGWFLCGRLNRPAESMAYFD 101

Query: 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476
            A    +A+         + + G       ++  A    +++L A         P     
Sbjct: 102 KA----LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPA 149

Query: 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536
           F  LA      G+L ++  Y +         V  +  +++  G             L  A
Sbjct: 150 FKELARTKMLAGQLGDADYYFKKYQSR----VEVLQADDLLLGWKI-------AKALGNA 198

Query: 537 IKLLQKALKI---YNDAP 551
               +   ++   +  + 
Sbjct: 199 QAAYEYEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 32/202 (15%)

Query: 390 EEAADRRL-MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRY 448
            + ++ +  + +      D+  A   +        A   D +         + Y  L   
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASI------EDALKSDPKNELAWLVRAEIYQYLKVN 58

Query: 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508
           D+A  ++++AL + K +  E +               R  +  ES +Y + AL     P 
Sbjct: 59  DKAQESFRQAL-SIKPDSAEINNNYGWFL------CGRLNRPAESMAYFDKALADPTYP- 110

Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA--QMGV 566
                        +         +   A   L+++L      P          A  ++  
Sbjct: 111 ------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP---------PAFKELAR 155

Query: 567 MYYMLGNYSDSYDSFKNAISKL 588
              + G   D+   FK   S++
Sbjct: 156 TKMLAGQLGDADYYFKKYQSRV 177

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 57/240 (23%)

Query: 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485
           ++  +V+++   +   Y+    Y +A  + + AL        ++ P     ++  A++Y 
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDAL--------KSDPKNELAWLVRAEIYQ 53

Query: 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY--------ESMNELEQAI 537
                 +++     AL I  KP              D + I           +N   +++
Sbjct: 54  YLKVNDKAQESFRQALSI--KP--------------DSAEINNNYGWFLCGRLNRPAESM 97

Query: 538 KLLQKALK--IYNDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593
               KAL    Y              A    G+     G +  +    K +++       
Sbjct: 98  AYFDKALADPTYPTPY---------IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--- 145

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653
                F  A  ++    +    + +A   F++ +S +E        D L +   +A    
Sbjct: 146 -----FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE----VLQADDLLLGWKIAKALG 196

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 34/200 (17%)

Query: 224 LLKQARELISSGDNPQ------KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS 277
           +L++    I +G N Q      + + L +   + +      K S         +A  Y  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 278 LGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
              Y++A    ++ ++  P       +            +     GQ +++L  Y     
Sbjct: 67  NRNYDKAYLFYKELLQKAP------NNVDC----LEACAEMQVCRGQEKDALRMY----- 111

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADR 395
             +++L + +        +L   +    +   +  +     L            + A  R
Sbjct: 112 --EKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM------QYA--R 160

Query: 396 RLMGLICETKGDHEAALEHL 415
              GL       +E A   L
Sbjct: 161 YRDGLSKLFTTRYEKARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 19/195 (9%), Positives = 49/195 (25%), Gaps = 31/195 (15%)

Query: 474 ASVFVRLADMYNRTGKLRESKSYCENALRI-------YEKPVPGVPPEEIASGLTDVSSI 526
               ++        G+  ++ SY    + +       Y         E  +   T+++  
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           Y+     ++A    ++ L+   +                 M    G   D+   ++  + 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKIL- 115

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARSILEQECGPYHPDTLGVY 645
                 + ++     A   +G           + +E   +  S                 
Sbjct: 116 ------QLEADNLA-ANIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 646 SNLAGTYDAIGREEK 660
                +     R EK
Sbjct: 161 YRDGLSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 21/206 (10%), Positives = 56/206 (27%), Gaps = 32/206 (15%)

Query: 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN--------GSPASLEEAADRRLMGLIC 402
           +       A ++A Q  +A  + +  + ++ D             S   +     + L  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64

Query: 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462
           +   +++ A           +    +        +  +  +   +  +A   Y+K L   
Sbjct: 65  KKNRNYDKAYLFYKEL----LQKAPNNVDCLE--ACAEMQVCRGQEKDALRMYEKIL--- 115

Query: 463 KTNKGENHPAVASVFVRLAD-MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
                +      +  + L +  Y    + ++        L           P ++     
Sbjct: 116 -----QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---------PTKMQYARY 161

Query: 522 DVSSIYESMNELEQAIKLLQKALKIY 547
                       E+A   LQK +  +
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRF 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 38/262 (14%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +  I   +G+ E A+           A +   E A+   ++        +  EA   Y++
Sbjct: 15  LANIKREQGNIEEAVRLY------RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517
           A+           P  A  +  + +       ++ +      A++I   P         A
Sbjct: 69  AIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NP-------AFA 111

Query: 518 SGLTDVSSIYESMNELEQAIKLLQKALKI---YNDAPGQQSTVAGIEAQMGVMYYMLGNY 574
              ++++SI++    + +AI   + ALK+   + DA             +     ++ ++
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC----------NLAHCLQIVCDW 161

Query: 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634
           +D  +  K  +S +    E+             +     +   +A+        + +   
Sbjct: 162 TDYDERMKKLVSIVADQLEKNR--LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINV 219

Query: 635 GPYHPDTLGVYSNLAGTYDAIG 656
               P        L+     +G
Sbjct: 220 LHKPPYEHPKDLKLSDGRLRVG 241

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568
           PG  P   A  L ++++I      +E+A++L +KAL+++ +     S        +  + 
Sbjct: 2   PGSCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS-------NLASVL 53

Query: 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628
              G   ++   +K AI             F  A + MG    +   +  A++ +  A  
Sbjct: 54  QQQGKLQEALMHYKEAIRISPT--------FADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

Query: 629 ILEQECGPYHPDTLGVYSNLAGTY-------DAIGREEKLGTANPDVDDEKRRLAELLKE 681
           I        +P     +SNLA  +       +AI          PD  D    LA  L+ 
Sbjct: 106 I--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157

Query: 682 AGR 684
              
Sbjct: 158 VCD 160

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +A I    G   EA+ +  +++E+       E A A       L       G+L+ +
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV-----FPEFAAAHS----NLASVLQQQGKLQEA 62

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           LM Y   + +         P   +    +     +      A +    A+ I+       
Sbjct: 63  LMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---- 110

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
               A     +  I +  G+   A+     A   +       +     C++      +  
Sbjct: 111 ----ADAHSNLASIHKDSGNIPEAIASYRTA---LKLKPDFPDAY---CNLAHCLQIVCD 160

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482
           + +     +K ++       +N          +  
Sbjct: 161 WTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
           + P   ++   LA    +     EA +  + AL++  +  +  S         +  + + 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS--------NLASVLQQ 55

Query: 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
           +G  + AL H   A    I        A    ++G+T   +     A   Y +A+     
Sbjct: 56  QGKLQEALMHYKEA----IRISPTF--ADAYSNMGNTLKEMQDVQGALQCYTRAI----- 104

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524
              + +PA A     LA ++  +G + E+ +    AL++  KP       +      +++
Sbjct: 105 ---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KP-------DFPDAYCNLA 152

Query: 525 SIYESMNELEQAIKLLQKALKIYNDAP 551
              + + +     + ++K + I  D  
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVADQL 179

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.6 bits (135), Expect = 8e-09
 Identities = 42/242 (17%), Positives = 73/242 (30%), Gaps = 68/242 (28%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G    +L RYD A   +++AL        + +P        LA    + G +  +    
Sbjct: 11  LGVQLYALGRYDAALTLFERAL--------KENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 498 ENALRI--------------YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543
           +  +                Y          E   G             LEQA+ +L+ A
Sbjct: 63  KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG------------YLEQALSVLKDA 110

Query: 544 LKIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFF- 599
            ++    A              Q G++Y +LG    +  S K A+    A+ +       
Sbjct: 111 ERVNPRYA----------PLHLQRGLVYALLGERDKAEASLKQAL----ALEDTPEIRSA 156

Query: 600 -GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRE 658
                  MG     R   +EA+  + +A            P  L +    A      G+ 
Sbjct: 157 LAELYLSMG-----RL--DEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201

Query: 659 EK 660
           E+
Sbjct: 202 EE 203

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 47/245 (19%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           +     +LG+Y+ A+ + E++++  P      +   A       L  T   LG +  +L 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENP------QDPEA----LYWLARTQLKLGLVNPALE 60

Query: 330 CYTTGLEVQKQV------LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
              T +    +       L E         R   +         +A    + A  ++   
Sbjct: 61  NGKTLVARTPRYLGGYMVLSEA---YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

Query: 384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443
                      +   GL+    G+ + A   L  A    +A +   E+ S   ++ + YL
Sbjct: 118 A------PLHLQ--RGLVYALLGERDKAEASLKQA----LALEDTPEIRS---ALAELYL 162

Query: 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES-KSYCENALR 502
           S+ R DEA   Y KAL        E  P    + VR A      GK  E+ ++    AL 
Sbjct: 163 SMGRLDEALAQYAKAL--------EQAPKDLDLRVRYASALLLKGKAEEAARAA---ALE 211

Query: 503 IYEKP 507
            +   
Sbjct: 212 HHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 49/246 (19%)

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
            ++LG     LG+ + +L  +   L+         +P+  E   +LA   ++    + A 
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPAL 59

Query: 371 KFCQMALDIHKDNGSPASLEEA---------ADRRLMGLICETKGDHEAALEHLVLASMT 421
           +  +  +                        A  R        KG  E AL  L  A   
Sbjct: 60  ENGKTLVARTPRY------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA--- 110

Query: 422 MIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480
               N + A +       G  Y  L   D+A  + ++AL A +            +   L
Sbjct: 111 -ERVNPRYAPLHL---QRGLVYALLGERDKAEASLKQAL-ALEDT--------PEIRSAL 157

Query: 481 ADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540
           A++Y   G+L E+ +    AL     P       +        +S      + E+A +  
Sbjct: 158 AELYLSMGRLDEALAQYAKALEQ--AP-------KDLDLRVRYASALLLKGKAEEAARAA 208

Query: 541 QKALKI 546
                 
Sbjct: 209 ALEHHH 214

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 9e-09
 Identities = 40/385 (10%), Positives = 89/385 (23%), Gaps = 71/385 (18%)

Query: 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336
           +L      +PVL Q+  +       +  +A              L  ++  L        
Sbjct: 407 ALETVQRLLPVLCQAHGL-----TPDQVVA----IASHDGGKQALETVQRLLPVLCQTHG 457

Query: 337 VQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396
           +         P                    +       A  +        + ++     
Sbjct: 458 L--------TPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL--------TPDQVVAIA 501

Query: 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456
                 +     +  L  L  A         D  VA    S G    +L           
Sbjct: 502 SNIGGKQALATVQRLLPVLCQA----HGLTPDQVVAI--ASNGGGKQALETVQRLLPVLC 555

Query: 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516
           +A      ++                  +  G  +  ++  +  L +  +          
Sbjct: 556 QAH-GLTPDQVVAI-------------ASNGGGKQALETV-QRLLPVLCQ--------AH 592

Query: 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD 576
                 V +I  ++    QA++ +Q+ L +   A G         A        L     
Sbjct: 593 GLTQVQVVAIASNIGGK-QALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQR 651

Query: 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636
                  A                VA+   G       ++   + +  +A  +       
Sbjct: 652 LLPVLCQAH-------GLTPDQV-VAIASNGGGKQALETVQRLLPVLCQAHGL------- 696

Query: 637 YHPDTLGVYSNLAGTYDAIGREEKL 661
              + +   ++  G   A+   ++L
Sbjct: 697 -TQEQVVAIASNNGGKQALETVQRL 720

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 61/465 (13%), Positives = 116/465 (24%), Gaps = 82/465 (17%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296
             ++ALE   R                 V+ +        +L      +PVL Q      
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQ--VQVVAIASNIGGKQALETVQRLLPVLCQ-----A 625

Query: 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL 356
                   +A              L  ++  L        +                   
Sbjct: 626 HGLTPAQVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPD---------------Q 666

Query: 357 AEAHVQALQFSEAQKFCQMALDIH-KDNG-SPASLEEAADRRLMGLICETKGDHEAALEH 414
             A        +A +  Q  L +  + +G +   +   A         +     +  L  
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN---NGGKQALETVQRLLPV 723

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L  A         D  VA    S G    +L           +A       +        
Sbjct: 724 LCQA----HGLTPDQVVA--IASNGGGKQALETVQRLLPVLCQAH-GLTPAQVVAI---- 772

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534
                     +  G         + AL   ++ +P +  +   + L  V +I  ++   +
Sbjct: 773 ---------ASNIG--------GKQALETVQRLLPVLCQDHGLT-LAQVVAIASNIG-GK 813

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594
           QA++ +Q+ L +   A G         A        L                       
Sbjct: 814 QALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDH--------- 864

Query: 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654
                G+  +Q  +A        +A+E  +    +L Q+ G      + + SN  G   A
Sbjct: 865 -----GLTPDQ-VVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN--GGKQA 916

Query: 655 IGREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 699
           +   ++L                 +           Q+LET+   
Sbjct: 917 LETVQRLLPVLCQDHGLTPDQVVAIASNSGG----KQALETVQRL 957

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 52/438 (11%), Positives = 109/438 (24%), Gaps = 79/438 (18%)

Query: 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAI 285
            Q   + S+    ++ALE   R            P    V+ +        +L      +
Sbjct: 190 AQVVAIASNN-GGKQALETVQRLLPVLCQAHGLTP--AQVVAIASHDGGKQALETMQRLL 246

Query: 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345
           PVL Q+  +P      +  +A              L  ++  L        +        
Sbjct: 247 PVLCQAHGLP-----PDQVVA----IASNIGGKQALETVQRLLPVLCQAHGL-------- 289

Query: 346 DPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404
            P              QAL            A  +     +P  +   A         + 
Sbjct: 290 TPDQVVAIASHGGGK-QALETVQRLLPVLCQAHGL-----TPDQVVAIASH---DGGKQA 340

Query: 405 KGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463
               +  L  L  A               +   S G    +L           +A     
Sbjct: 341 LETVQRLLPVLCQA----HGLTPDQVVAIA---SNGGGKQALETVQRLLPVLCQAH-GLT 392

Query: 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523
            ++                     G  +  ++  +  L +  +   G+ P+++ +     
Sbjct: 393 PDQ--------------VVAIASNGGKQALETV-QRLLPVLCQ-AHGLTPDQVVA----- 431

Query: 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583
                S +  +QA++ +Q+ L +     G         A        L            
Sbjct: 432 ---IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643
           A           +    VA+           ++   + +  +A  +         PD + 
Sbjct: 489 AH--------GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL--------TPDQVV 532

Query: 644 VYSNLAGTYDAIGREEKL 661
             ++  G   A+   ++L
Sbjct: 533 AIASNGGGKQALETVQRL 550

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 33/236 (13%), Positives = 54/236 (22%), Gaps = 41/236 (17%)

Query: 279 GQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
                 +  L  ++   P      +  +A     + L D    +G      M    GL +
Sbjct: 3   ADGPRELLQLRAAVRHRP------QDFVA----WLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397
                    P   E    L        + +EA    Q A D   ++              
Sbjct: 53  --------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH--------PGIALW 96

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
           +G   E  G  EAA      A         +    +    + +    L  +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRA----HQLLPEEPYIT--AQLLNWRRRLCDWRALDVLSAQ 150

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513
              A     G   P         A +        +       A  I     P  P 
Sbjct: 151 VRAAVAQGVGAVEP--------FAFLSEDASAAEQLACARTRAQAIAASVRPLAPT 198

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 23/146 (15%)

Query: 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465
            D    L  L  A   +    QD         + D  L +        A Q+ L      
Sbjct: 3   ADGPRELLQLRAA---VRHRPQDFVAW---LMLADAELGMGDTTAGEMAVQRGL------ 50

Query: 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525
               HP       RL  +     +  E+    + A      P       E       +  
Sbjct: 51  --ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--AP-------EHPGIALWLGH 99

Query: 526 IYESMNELEQAIKLLQKALKIYNDAP 551
             E   + E A     +A ++  + P
Sbjct: 100 ALEDAGQAEAAAAAYTRAHQLLPEEP 125

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 17/175 (9%), Positives = 44/175 (25%), Gaps = 32/175 (18%)

Query: 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
           T            A+R          P++       ++     M +       +Q+ L +
Sbjct: 2   TADGPRELLQLRAAVRHR--------PQD-FVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606
           +              A++G + +    ++++    + A           +         +
Sbjct: 53  HPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQAS--------DAAPEHPGIALWL 97

Query: 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKL 661
           G A         A   +  A  +         P+   + + L      +     L
Sbjct: 98  GHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 30/194 (15%)

Query: 320 MLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379
           M       L+     +           P+       LA+A +     +  +   Q  L +
Sbjct: 1   MTADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL 52

Query: 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439
           H  +              +G +  T+  H  A   L  AS      D   E   +   +G
Sbjct: 53  HPGH--------PEAVARLGRVRWTQQRHAEAAVLLQQAS------DAAPEHPGIALWLG 98

Query: 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499
                  + + A  AY +A         +  P    +  +L +   R    R        
Sbjct: 99  HALEDAGQAEAAAAAYTRAH--------QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

Query: 500 ALRIYEKPVPGVPP 513
                 + V  V P
Sbjct: 151 VRAAVAQGVGAVEP 164

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 278 LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337
           LG   +A+P  E++I   +  +           ++ LG T+  LG+   +      G++ 
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAEC------YLGLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 338 QKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392
                    P       + A       ++ +  +     +    D+ +  S ++A
Sbjct: 57  --------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504
           L    +A   Y+KA+ +     G     +A  ++ L   +   G+ R++++   N ++ +
Sbjct: 3   LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
                   P   A      + +  ++   EQ ++LL K +   +D   
Sbjct: 58  --------PNHQAL-RVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547
           G   ++  Y E A+        G+  +++A     + S + ++ E  +A  +L   +K +
Sbjct: 4   GLEAQAVPYYEKAIAS------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587
            +          +     ++ Y LG Y    +     I++
Sbjct: 58  PNHQA-------LRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 406 GDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464
           G    A+ +   A    IA   Q  ++A     +G T+ +L  Y +A       +     
Sbjct: 4   GLEAQAVPYYEKA----IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV----- 54

Query: 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503
              +  P   ++ V  A +    G+  +        +  
Sbjct: 55  ---KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 40/269 (14%), Positives = 71/269 (26%), Gaps = 42/269 (15%)

Query: 237 NPQKALELAL-RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI- 294
            P    E+ L R  +     A      E    L+    +Y SLG    A     Q++ I 
Sbjct: 16  QPTLQQEVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 295 PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCR 354
           P      +           LG      G  + +   + + LE+        DP       
Sbjct: 74  P------DMPEV----FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHL 115

Query: 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEH 414
               A     +   AQ           ++           R L   + E K D + A E 
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPND---------PFRSLWLYLAEQKLDEKQAKEV 166

Query: 415 LVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474
           L        ++ +      V+  +G+     +  +                       ++
Sbjct: 167 LKQHF--EKSDKEQWGWNIVEFYLGNISE-QTLMERLKADATDNT--------SLAEHLS 215

Query: 475 SVFVRLADMYNRTGKLRESKSYCENALRI 503
                L   Y   G L  + +  + A+  
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 38/324 (11%), Positives = 73/324 (22%), Gaps = 95/324 (29%)

Query: 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
            V+A       Q    +  +EQ +    + +  E A        + G  Y  LG    + 
Sbjct: 9   EVLAVPLQPTLQQEVILARMEQILASRALTD-DERAQL----LYERGVLYDSLGLRALAR 63

Query: 329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388
             ++  L +         P        + E                       +      
Sbjct: 64  NDFSQALAI--------RPD-------MPEVF---------------------NY----- 82

Query: 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-NDQDAEVASVDCSIGDTYLSLSR 447
                    +G+     G+ +AA E         +  +           + G       R
Sbjct: 83  ---------LGIYLTQAGNFDAAYEAFDSV----LELDPTYNYAHL---NRGIALYYGGR 126

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR--TGKLRESKSYCENALRIYE 505
              A             N                         +  + K   E   + +E
Sbjct: 127 DKLAQDDLLAFY-QDDPNDPFRS-------------LWLYLAEQKLDEKQAKEVLKQHFE 172

Query: 506 KPVPGVPP-EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA-- 562
           K          +   L ++S        +E+          +              E   
Sbjct: 173 KSDKEQWGWNIVEFYLGNISE----QTLMERLKADATDNTSLAEHLS---------ETNF 219

Query: 563 QMGVMYYMLGNYSDSYDSFKNAIS 586
            +G  Y  LG+   +   FK A++
Sbjct: 220 YLGKYYLSLGDLDSATALFKLAVA 243

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 25/156 (16%)

Query: 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543
           +N      + K + + AL  +            +    ++  +Y  +  + +A K   ++
Sbjct: 10  WNEGVLAADKKDW-KGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRS 63

Query: 544 LKIYNDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRA--------IGE 593
           +                 A  Q G++YY    Y  +    K A+ +LR         +G 
Sbjct: 64  INRDKHLA---------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
           +   F    L  +     ++    +A E    A S+
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457
            G++   K D + AL+            D  + +     +IG  Y  L    EA  A+ +
Sbjct: 12  EGVLAADKKDWKGALDAFSAV------QDPHSRIC---FNIGCMYTILKNMTEAEKAFTR 62

Query: 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE-------KPVPG 510
           ++             +A  + +   +Y +T K   +    + AL           K +  
Sbjct: 63  SI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
                    L +++ +Y    E ++A + L  A  + ++
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 42/162 (25%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
             +      +  A+       +         H+         +G  Y +L  +  +   +
Sbjct: 13  GVLAADKKDWKGALDAFSAVQDP--------HSRI----CFNIGCMYTILKNMTEAEKAF 60

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---AL----QFSEAQKFCQMALDIHKDNG 384
           T  +          D        +LA A+ Q         ++  A K  + AL   + N 
Sbjct: 61  TRSINR--------DK-------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105

Query: 385 SPASLEEAADRRL--------MGLICETKGDHEAALEHLVLA 418
                      +L        +  +   K + + A E L LA
Sbjct: 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 24/218 (11%)

Query: 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKS 495
             +G+ Y        A   +  ALT  K      + ++    ++       +  + +S  
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 496 YCENALRIYEKPVPGVPPEEIASG---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
             + A+++               G   L+   +  ++    +QA+    +A K+   A  
Sbjct: 201 QAKLAVQMD----VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS- 255

Query: 553 QQSTVAGIEA--QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610
                +  +       ++    +Y ++ + F  A            A+      +     
Sbjct: 256 -----SNPDLHLNRATLHKYEESYGEALEGFSQAA-------ALDPAWPE-PQQREQQLL 302

Query: 611 VQRYSINEAVELFEEARSI-LEQECGPYHPDTLGVYSN 647
                +   +E   + +   L+   G   P  LG   +
Sbjct: 303 EFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGD 340

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 39/309 (12%), Positives = 91/309 (29%), Gaps = 39/309 (12%)

Query: 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN-EAIPVLEQSIEIPVI 297
           +K L+       S +              L +          Y+ EA  +L +++++   
Sbjct: 85  EKTLQQMEEVLGSAQ---------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-- 133

Query: 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLA 357
               E   A      QLG+ Y   G + ++  C++  L   K  +   +  +        
Sbjct: 134 ---PELVEA----WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186

Query: 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVL 417
                +    ++ +  ++A+ +   +G    +   A   L     +     + AL     
Sbjct: 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
           A      + + +    +  +    +     Y EA   + +A            PA     
Sbjct: 247 AEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA--------ALDPAWPEPQ 295

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537
            R   +     +L        + L    K  P    + +   L   + +    +   Q+ 
Sbjct: 296 QREQQLLEFLSRL-------TSLLESKGKTKP-KKLQSMLGSLRP-AHLGPCGDGRYQSA 346

Query: 538 KLLQKALKI 546
              +  L++
Sbjct: 347 SGQKMTLEL 355

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 21/151 (13%)

Query: 237 NPQKALELALRAAKSFEIGANGKPSLEL----VMCLHVIAAIYCSLGQYNEAIPVLEQSI 292
           N  +   ++     +   GA  K    +    +  ++  A  + + G+  EA        
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352
                    +     +   M L   Y +  Q + +   Y     +               
Sbjct: 64  IY-------DFYNVDY--IMGLAAIYQIKEQFQQAADLYAVAFAL--------GKNDYTP 106

Query: 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383
             +  +  ++     +A++  ++ +    D 
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 19/148 (12%)

Query: 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL-----MGLICETKGDHEAALEHLVL 417
           +L  +E +      +D      +   +    D  +            KG  E A      
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
             +       D         +   Y    ++ +A   Y  A    K +         +  
Sbjct: 62  LCI------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--------YTPV 107

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYE 505
                   R     ++K   E  ++   
Sbjct: 108 FHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 17/126 (13%)

Query: 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
           S    + +  R +EA   ++                     + LA +Y    + +++   
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADL 92

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556
              A  +        P                 +    +A +  +  ++  ND   +   
Sbjct: 93  YAVAFAL--GKNDYTPVFHTGQ-------CQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

Query: 557 VAGIEA 562
            + ++A
Sbjct: 144 QSYLDA 149

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 48.4 bits (114), Expect = 8e-07
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 534 EQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564
           +QA+K LQ +LK+Y  A      +A I+A M
Sbjct: 19  KQALKKLQASLKLY--ADDSAPALA-IKATM 46

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 40/157 (25%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G+ Y     YDEA   YQKAL        E  P  A  +  L + Y + G   E+  Y 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 58

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI--------YND 549
           + AL +   P         A    ++ + Y    + ++AI+  QKAL++        YN 
Sbjct: 59  QKALEL--DP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN- 108

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                         +G  YY  G+Y ++ + ++ A+ 
Sbjct: 109 --------------LGNAYYKQGDYDEAIEYYQKALE 131

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.1 bits (103), Expect = 4e-05
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 29/138 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y    + ++AI+  QKAL++    A          EA   +G  YY  G+Y ++ + ++
Sbjct: 10  AYYKQGDYDEAIEYYQKALELDPRSA----------EAWYNLGNAYYKQGDYDEAIEYYQ 59

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A+     +          A   +G A  ++   +EA+E +++A  +         P + 
Sbjct: 60  KALE----L---DPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSA 103

Query: 643 GVYSNLAGTYDAIGREEK 660
             + NL   Y   G  ++
Sbjct: 104 EAWYNLGNAYYKQGDYDE 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 21/139 (15%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G       ++D+A   +Q                 A  F+ L       G   ++    
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTV 557
                +         P   A         +  + +L+ A      A  +    P      
Sbjct: 76  SYGALM--DINEPRFPFHAAE-------CHLQLGDLDGAESGFYSARALAAAQP----AH 122

Query: 558 AGIEAQMGVMYYMLGNYSD 576
             + A+ G M   +    D
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 17/126 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +       G++++A  + +    +       +H  A++   + LG     LG  E +
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCML-------DHYDARY--FLGLGACRQSLGLYEQA 71

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           L  Y+ G  +        D        + AE H+Q      A+     A  +     +  
Sbjct: 72  LQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

Query: 388 SLEEAA 393
           +L   A
Sbjct: 124 ALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 20/145 (13%)

Query: 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398
             +         E    L     QA ++ +AQK  Q    +   +        A     +
Sbjct: 8   AMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------ARYFLGL 58

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
           G   ++ G +E AL+     ++    +  +           + +L L   D A   +  A
Sbjct: 59  GACRQSLGLYEQALQSYSYGAL---MDINEPRFP---FHAAECHLQLGDLDGAESGFYSA 112

Query: 459 LTAFKTNKGENHPAVASVFVRLADM 483
                       PA  ++  R   M
Sbjct: 113 R-----ALAAAQPAHEALAARAGAM 132

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           ++   + A  +  +G+       +++A   Y KA+        E  P+  + +   A +Y
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI--------ELDPSNITFYNNKAAVY 52

Query: 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544
               K  E   +CE A+ +          + IA  ++   + ++  N+L  A++   ++L
Sbjct: 53  FEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 545 KIYNDA 550
             + D 
Sbjct: 111 SEFRDP 116

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 17/130 (13%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
           L+ +A      G Y +A  V +    +         +       + LG     +GQ + +
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRF----FLGLGACRQAMGQYDLA 74

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           +  Y+ G  +        D        + AE  +Q  + +EA+    +A ++  +     
Sbjct: 75  IHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126

Query: 388 SLEEAADRRL 397
            L       L
Sbjct: 127 ELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 22/139 (15%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
                     M  +I     S  +LE+      +       G +E A        +    
Sbjct: 2   PLGSGGGTIAMLNEI-----SSDTLEQLYS---LAFNQYQSGXYEDAHXVFQALCV---L 50

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           +  D+        +G    ++ +YD A  +Y                         A+  
Sbjct: 51  DHYDSRFF---LGLGACRQAMGQYDLAIHSYSYGA--------VMDIXEPRFPFHAAECL 99

Query: 485 NRTGKLRESKSYCENALRI 503
            + G+L E++S    A  +
Sbjct: 100 LQXGELAEAESGLFLAQEL 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 17/110 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMC 330
                  L    EA    E   +        E   A       LG T A   +   +++ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQK-----EPEREEA----WRSLGLTQAENEKDGLAIIA 73

Query: 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
                 +        DP+       LA +H      + A    +  L   
Sbjct: 74  LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622
           + G+    L N +++  +F+           +K      A   +GL   +      A+  
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK 660
              AR +         P  + V++ LA ++        
Sbjct: 74  LNHARML--------DPKDIAVHAALAVSHTNEHNANA 103

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 17/109 (15%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
            G + L L+   EA  A++           +  P     +  L        K   +    
Sbjct: 23  EGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546
            +A  +   P       +  +    ++  + + +    A+  L+  L  
Sbjct: 75  NHARML--DP-------KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 24/133 (18%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
                 LE  +       G ++ L        LG TYA   Q + +L      L+     
Sbjct: 2   QAITERLEAMLAQ-----GTDNMLL----RFTLGKTYAEHEQFDAALPHLRAALDF---- 48

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
               DP      ++L +        + A++  +  L   +  G    ++E      +  +
Sbjct: 49  ----DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE------LQ-V 97

Query: 402 CETKGDHEAALEH 414
              +   E ALEH
Sbjct: 98  FLRRLAREDALEH 110

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+       +D A   Y KA         E  P   +     A +Y   G   + +  CE
Sbjct: 11  GNDAYKKKDFDTALKHYDKAK--------ELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
            A+ +  +        +IA     + + Y    + + AI    K+L  +  
Sbjct: 63  KAIEVGRENREDYR--QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 271 IAAIYCSLGQYNEAIPVLEQSIEI-PVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLM 329
           +A  +      + A+ + E+ +E  P      ++       +  LG  Y  L + ++++ 
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDP------DYVGT----YYHLGKLYERLDRTDDAID 62

Query: 330 CYTTGLEVQKQ 340
            Y  G+EV ++
Sbjct: 63  TYAQGIEVARE 73

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 44.9 bits (105), Expect = 7e-05
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
           +L  A +   +    ++AL    R  + + I           + +  +  +    G + +
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRI-FFPGSHPVRGVQVMKVGKLQLHQGMFPQ 389

Query: 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSL 328
           A+  L  + +I  +  G+EH+L +        D   +L + + ++
Sbjct: 390 AMKNLRLAFDIMRVTHGREHSLIE--------DLILLLEECDANI 426

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 20/192 (10%), Positives = 53/192 (27%), Gaps = 25/192 (13%)

Query: 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAA 411
            C         A   +  ++  +   +  K      +  +      M     +       
Sbjct: 263 DCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP 322

Query: 412 LEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471
             ++    +   A               D  ++L   +EA F   + +  ++     +HP
Sbjct: 323 DINIYQLKVLDCA--------------MDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368

Query: 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531
                 +++  +    G   ++      A  I            +  G  + S I + + 
Sbjct: 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM----------RVTHG-REHSLIEDLIL 417

Query: 532 ELEQAIKLLQKA 543
            LE+    ++ +
Sbjct: 418 LLEECDANIRAS 429

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 44.9 bits (105), Expect = 8e-05
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 5/155 (3%)

Query: 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAG-IEAQMGVMYYMLGNYSDSYDSFKNAIS 586
            S     + +KL ++ L+         +     + +    +   L  Y ++    +  + 
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646
               +    +A  G+A+ + GL       I     +  +A +IL    GP HP    +  
Sbjct: 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP----ITK 435

Query: 647 NLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKE 681
           +L         E ++   N  +  + R  A   + 
Sbjct: 436 DLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 2/106 (1%)

Query: 402 CETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
             ++G +   ++     L     +  D +  V  +     +    L  Y+EA    ++ +
Sbjct: 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378

Query: 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
             +      N+  +    +R        G +         A  I  
Sbjct: 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 25/255 (9%), Positives = 59/255 (23%), Gaps = 45/255 (17%)

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445
           P+S  E    R+      +    +A +  L       ++   D    +        Y   
Sbjct: 59  PSSAPELQAVRMFAEYLASHSRRDAIVAELDRE----MSRSVDVTNTTFLLMAASIYFYD 114

Query: 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
              D A     +  +                      +  +  +L  ++   +       
Sbjct: 115 QNPDAALRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQD- 160

Query: 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565
                   +   + L        +   L    + LQ A  I+ +   + S    +     
Sbjct: 161 -------EDATLTQL------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207

Query: 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAV-ELFE 624
             +   G +  +    + A+         K +     L  + +         E       
Sbjct: 208 ACHMAQGRWEAAEGVLQEAL--------DKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259

Query: 625 EARSILEQECGPYHP 639
           + +          HP
Sbjct: 260 QLKDA-----HRSHP 269

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 23/109 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEA--QMGVMYYMLGNYSDSYDSFK 582
           +        ++I L +KA+++   ++          +     G   Y L  Y ++ D + 
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEES----------KYWLMKGKALYNLERYEEAVDCYN 64

Query: 583 NAISKLRAIGERKSAFF--GVALNQMGLACVQRYSINEAVELFEEARSI 629
             I+ +      K  +     AL  +              E+ E    +
Sbjct: 65  YVIN-VIEDEYNKDVWAAKADALRYIE-----GK--EVEAEIAEARAKL 105

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 45/200 (22%)

Query: 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424
           ++   +   Q   D      S  + E                  +  +           A
Sbjct: 2   KWQAVRAEYQRQRDPLHQFASQQNPEAQLQAL------------QDKIR----------A 39

Query: 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484
           N Q++E  ++   +G+ YL  + Y  +  AY++AL      +GEN      ++  LA + 
Sbjct: 40  NPQNSEQWAL---LGEYYLWQNDYSNSLLAYRQALQL----RGENA----ELYAALATVL 88

Query: 485 NRTGK---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541
                     ++++  + AL +              + L  ++S         QAI+L Q
Sbjct: 89  YYQASQHMTAQTRAMIDKALAL--DS-------NEITALMLLASDAFMQANYAQAIELWQ 139

Query: 542 KALKIYNDAPGQQSTVAGIE 561
           K + + +    +   V  I 
Sbjct: 140 KVMDLNSPRINRTQLVESIN 159

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 10/115 (8%), Positives = 36/115 (31%), Gaps = 1/115 (0%)

Query: 528 ESMNELEQAIKLLQKALKIYNDA-PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
           +      + +++ + + +  +         +  +  Q   +   + ++  +    +  I 
Sbjct: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT 641
                    S        ++G   +   +     +  ++A +I+E   G  HP  
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 389 LEEAADRRLMGLICETKGDHEAALEHL--VLASMTMIANDQDAEVASVDCSIGDTYLSLS 446
           +  A +        +        LE        M+ +  D +  +  +        L + 
Sbjct: 295 VRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ 354

Query: 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505
            ++ A    QK +  +  +       VAS++++L  +Y         +   + A+ I E
Sbjct: 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 29/134 (21%)

Query: 526 IYESMNELEQAIKLLQKALKIY-NDAPGQQSTVAGIEAQ--MGVMYYMLGNYSDSYDSFK 582
            Y    + ++AI+  QKAL++  N+A          EA   +G  YY  G+Y ++ + ++
Sbjct: 18  AYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642
            A+     +          A   +G A  ++   +EA+E +++A  +         P+  
Sbjct: 68  KALE----L---DPNNAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNA 111

Query: 643 GVYSNLAGTYDAIG 656
               NL       G
Sbjct: 112 EAKQNLGNAKQKQG 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	712
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.98
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.9
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.89
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.86
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.86
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.83
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.78
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.77
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.77
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.71
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.67
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.66
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.66
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.6
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.59
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.58
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.57
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.56
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.47
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.43
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.41
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.39
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.38
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.35
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.35
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.34
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.33
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.31
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.3
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.27
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.27
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.26
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.25
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.23
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.2
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.18
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.17
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.1
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.1
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.1
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.07
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.03
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.03
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.02
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.94
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.89
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.83
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.79
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.77
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.65
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.64
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.58
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.54
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.52
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.44
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.42
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.37
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.37
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.18
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.08
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.06
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.98
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.98
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.78
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.71
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.68
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.67
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.52
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.48
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.43
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.85
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.69
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.73
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.72
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.71
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	95.64
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.09
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.52
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.34
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.16
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.88
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.61
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.56
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.56
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.46
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.12
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.85
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.75
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.9
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.68
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.43
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.37
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.93
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.7
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.36
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.24
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	87.64
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	87.19
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	86.93
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.81
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	85.14
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	84.93
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	82.61
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	81.54
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.3
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	80.73

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3e-35  Score=311.87  Aligned_cols=378  Identities=19%  Similarity=0.203  Sum_probs=332.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchH
Q 005139          226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL  305 (712)
Q Consensus       226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  305 (712)
                      .+|..++..|+ +++|+..+.++++..         |....++..+|.++...|++++|+.++++++...     +..+ 
T Consensus         4 ~~a~~~~~~g~-~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~-   67 (388)
T 1w3b_A            4 ELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLA-   67 (388)
T ss_dssp             THHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-
T ss_pred             hHHHHHHHCCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch-
Confidence            46888999997 999999999988763         4446678889999999999999999999999875     4333 


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       306 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                         .++..+|.++...|++++|+..|++++.+        +|....++..+|.++...|++++|+..|++++.+.+..  
T Consensus        68 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--  134 (388)
T 1w3b_A           68 ---EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL--  134 (388)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC--
T ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Confidence               35999999999999999999999999998        67888899999999999999999999999999886543  


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                            ..++..+|.++...|++++|+.+|.+++..      .|....++..+|.++...|++++|+.+|++++.+    
T Consensus       135 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  198 (388)
T 1w3b_A          135 ------YCVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----  198 (388)
T ss_dssp             ------THHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred             ------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence                  236889999999999999999999999853      4566788999999999999999999999999998    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                          .|....++..+|.++...|++++|+..|++++.+         .|....++..+|.++...|++++|+..|++++.
T Consensus       199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  265 (388)
T 1w3b_A          199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                7888899999999999999999999999999998         344577899999999999999999999999998


Q ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE  625 (712)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  625 (712)
                      +.+..       ..++..+|.++...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|++
T Consensus       266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            64433       4578899999999999999999999999862        22347889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhcc
Q 005139          626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGR  684 (712)
Q Consensus       626 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~  684 (712)
                      ++++        +|+...++.++|.+|...|+       .+.....+|+...++..+|.++..+|+
T Consensus       331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9987        88888999999999999998       444456789999999999999988774

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5e-36  Score=317.81  Aligned_cols=383  Identities=17%  Similarity=0.213  Sum_probs=340.4

Q ss_pred             CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005139          194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA  273 (712)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~  273 (712)
                      +......|++.+|++.+..+...+|+...++..++..++..|+ +++|+.++++++...         |..+.++..+|.
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~~---------p~~~~~~~~lg~   75 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQN---------PLLAEAYSNLGN   75 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CCchHHHHHHHH
Confidence            3345678889989877888888899999999999999999997 999999999998753         445778999999


Q ss_pred             HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (712)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (712)
                      +|...|++++|+..|++++.+.     |+..    .++..+|.++...|++++|+..|++++.+        +|....++
T Consensus        76 ~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  138 (388)
T 1w3b_A           76 VYKERGQLQEAIEHYRHALRLK-----PDFI----DGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVR  138 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcC-----cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence            9999999999999999999875     4443    35899999999999999999999999988        67788899


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (712)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (712)
                      ..+|.++...|++++|+.+|++++...+..        ..++..+|.++...|++++|+.+|++++..      .|....
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~  204 (388)
T 1w3b_A          139 SDLGNLLKALGRLEEAKACYLKAIETQPNF--------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLD  204 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHH
Confidence            999999999999999999999999875432        457899999999999999999999999853      455678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ++..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+.+|++++++         .
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~  267 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---------Q  267 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------C
Confidence            8999999999999999999999999998        7878889999999999999999999999999987         3


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      |....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|+.+|++++++      
T Consensus       268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------  334 (388)
T 1w3b_A          268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEV------  334 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            3446779999999999999999999999999985543       467889999999999999999999999874      


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       594 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                        .+....++..+|.++...|++++|+.+|++++++        +|+...++.++|.++..+|+
T Consensus       335 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence              2334578999999999999999999999999998        89999999999999998874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-32  Score=309.87  Aligned_cols=443  Identities=12%  Similarity=0.075  Sum_probs=355.2

Q ss_pred             ccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139          189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL  268 (712)
Q Consensus       189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  268 (712)
                      .+...+..+...|++.+|+..+.......|+. ..++.++..+...|+ +++|+..|++++..          +....++
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~----------~~~~~~~  153 (597)
T 2xpi_A           86 YLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY----------NRSSACR  153 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG----------GTCHHHH
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc----------ccchhHH
Confidence            34455566777888888886666655555654 566889999999997 99999999987642          2225578


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHhhchhhhh--------hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIE--------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      ..++.+|...|++++|+.+|++........        ..... .....+++.+|.+|...|++++|+.+|+++++.   
T Consensus       154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  229 (597)
T 2xpi_A          154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---  229 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            889999999999999999998643221000        00000 113557999999999999999999999999987   


Q ss_pred             HhCCCChhHHHHHHHH--------------------------------------HHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          341 VLGETDPRVGETCRYL--------------------------------------AEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~l--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                           +|....++..+                                      +..|...|++++|+.+|++++.. +.
T Consensus       230 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~  303 (597)
T 2xpi_A          230 -----DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EK  303 (597)
T ss_dssp             -----CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GG
T ss_pred             -----CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cc
Confidence                 34333333333                                      44555778899999999888765 11


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (712)
Q Consensus       383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (712)
                              ...++..++.+|...|++++|+.+|++++..      .+....++..++.++...|++++|+..+++++.. 
T Consensus       304 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  368 (597)
T 2xpi_A          304 --------SSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-  368 (597)
T ss_dssp             --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred             --------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-
Confidence                    1457899999999999999999999998743      2333456788999999999999999999999977 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005139          463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK  542 (712)
Q Consensus       463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (712)
                             .|....++..+|.+|...|++++|+.+|++++++         .+....++..++.+|...|++++|+.+|++
T Consensus       369 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  432 (597)
T 2xpi_A          369 -------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWIGFAHSFAIEGEHDQAISAYTT  432 (597)
T ss_dssp             -------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                   6777889999999999999999999999999997         334567899999999999999999999999


Q ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL  622 (712)
Q Consensus       543 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  622 (712)
                      ++...+..       ..++..+|.+|...|++++|+.+|++++.+.     +.   ...++..+|.+|...|++++|+.+
T Consensus       433 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~  497 (597)
T 2xpi_A          433 AARLFQGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QY---DPLLLNELGVVAFNKSDMQTAINH  497 (597)
T ss_dssp             HHHTTTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHhCCHHHHHHH
Confidence            99875433       2578899999999999999999999998751     11   236899999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhh-HHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005139          623 FEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE  694 (712)
Q Consensus       623 ~~~al~~~~~~~~~~~p~~-~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~  694 (712)
                      |++++++....  +.+|+. ..++..++.+|...|+       .+.+....|++..++..++.+|...|++++|. +.|+
T Consensus       498 ~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~  574 (597)
T 2xpi_A          498 FQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI-THLH  574 (597)
T ss_dssp             HHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             HHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHH
Confidence            99999986543  225554 7899999999999999       33333456888899999999999999999999 9999


Q ss_pred             HHHHhccc
Q 005139          695 TLLDANSR  702 (712)
Q Consensus       695 ~~l~~~p~  702 (712)
                      ++++.+|+
T Consensus       575 ~~l~~~p~  582 (597)
T 2xpi_A          575 ESLAISPN  582 (597)
T ss_dssp             HHHHHCTT
T ss_pred             HHHhcCCC
Confidence            99999997

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-30  Score=284.42  Aligned_cols=378  Identities=11%  Similarity=0.062  Sum_probs=311.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+..++.+|..++..|+ |++|+.+|++++...       ++   ..++..+|.++...|++++|+..|++++++.   
T Consensus         4 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-------p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   69 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKK-YDDAIKYYNWALELK-------ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK---   69 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             hhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-------cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---
Confidence            356789999999999997 999999999999863       22   6688999999999999999999999999875   


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------h-------------
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-----------------------L-------------  342 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~-------------  342 (712)
                        |..+    .++..+|.+|...|++++|+..|++++......                       +             
T Consensus        70 --p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  143 (514)
T 2gw1_A           70 --PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL  143 (514)
T ss_dssp             --SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------
T ss_pred             --hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence              4443    358999999999999999999999987652100                       0             


Q ss_pred             -----------C------------------------CCChhHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhcC
Q 005139          343 -----------G------------------------ETDPRVGETCRYLAEAHVQ---ALQFSEAQKFCQMALDIHKDNG  384 (712)
Q Consensus       343 -----------~------------------------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~  384 (712)
                                 .                        -..|....++..+|.+++.   .|++++|+.+|++++...+...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  223 (514)
T 2gw1_A          144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL  223 (514)
T ss_dssp             -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence                       0                        0002336777888888886   8999999999999999543322


Q ss_pred             --CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          385 --SPAS----LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       385 --~~~~----~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                        .+..    +....++..+|.++...|++++|+.+|++++..      .+. ..++..+|.++...|++++|+.+++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              2222    556778999999999999999999999999853      233 788999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      +..        .|....++..+|.++...|++++|+.+|++++.+..         ....++..+|.++...|++++|+.
T Consensus       297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~  359 (514)
T 2gw1_A          297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP---------ENIFPYIQLACLAYRENKFDDCET  359 (514)
T ss_dssp             HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS---------SCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred             hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHHcCCHHHHHH
Confidence            987        666678999999999999999999999999998732         235678999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH---hCC
Q 005139          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ---RYS  615 (712)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~  615 (712)
                      ++++++...+..       ..++..+|.++...|++++|+.+|++++.+........  ....++..+|.++..   .|+
T Consensus       360 ~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  430 (514)
T 2gw1_A          360 LFSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVEN  430 (514)
T ss_dssp             HHHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTH
T ss_pred             HHHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCC
Confidence            999999876543       25788999999999999999999999998765432211  112488999999999   999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +++|+.+|++++.+        +|+...++..+|.+|...|+
T Consensus       431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~  464 (514)
T 2gw1_A          431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQED  464 (514)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcC
Confidence            99999999999998        77766777777777776666

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.98  E-value=5e-30  Score=283.87  Aligned_cols=377  Identities=12%  Similarity=0.103  Sum_probs=297.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+..++.+|..++..|+ +++|+.+|++++...         |..+.++..+|.+|..+|++++|+..|++++.+.   
T Consensus        23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   89 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            457889999999999997 999999999999864         4447889999999999999999999999999885   


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------------------HHHhCC----------
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ------------------------KQVLGE----------  344 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------~~~~~~----------  344 (712)
                        +.++    .++..+|.++...|++++|+..|+ ++.+.                        ...+..          
T Consensus        90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  162 (537)
T 3fp2_A           90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP  162 (537)
T ss_dssp             --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred             --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence              4443    358999999999999999999995 44321                        111110          


Q ss_pred             --------------------------CChhHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005139          345 --------------------------TDPRVGETCRYLA--------EAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (712)
Q Consensus       345 --------------------------~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (712)
                                                ..+........++        ......|++++|+.++++++...+.... ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~  241 (537)
T 3fp2_A          163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LREN  241 (537)
T ss_dssp             CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHH
T ss_pred             hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHH
Confidence                                      0000011222222        2233345778888888888766543211 1123


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      .+.++..+|.++...|++++|+.+|++++..      .|. ..++..+|.++...|++++|+.+|++++..        .
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~  306 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------N  306 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------C
Confidence            3667899999999999999999999999853      333 678999999999999999999999999998        7


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      |....++..+|.++...|++++|+.+|++++.+.         |....++..+|.++...|++++|+.++++++...+..
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  377 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL  377 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            7778899999999999999999999999999983         3335679999999999999999999999999986544


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh----------CCHHHHH
Q 005139          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAV  620 (712)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~  620 (712)
                             ..++..+|.++...|++++|+.+|++++.+..........  ...+..+|.++...          |++++|+
T Consensus       378 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~  448 (537)
T 3fp2_A          378 -------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG--IGPLIGKATILARQSSQDPTQLDEEKFNAAI  448 (537)
T ss_dssp             -------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST--THHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH--HHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence                   2578899999999999999999999999987665433222  24567788999999          9999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       621 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .+|++++.+        +|+...++..+|.+|..+|+
T Consensus       449 ~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~  477 (537)
T 3fp2_A          449 KLLTKACEL--------DPRSEQAKIGLAQLKLQMEK  477 (537)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHhcc
Confidence            999999998        77777777777777777776

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.98  E-value=1.4e-30  Score=292.40  Aligned_cols=392  Identities=13%  Similarity=0.064  Sum_probs=324.7

Q ss_pred             cccCCCcccccccccccCccccccCCCC----------------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 005139          190 SNAGATPMKKRKGKLHKGQDVSEAGLDK----------------PGLGPLLLKQARELISSGDNPQKALELALRAAKSFE  253 (712)
Q Consensus       190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~  253 (712)
                      ....+..+...|++.+|+..+.+..+..                +.....+..+|..+...|+ +++|+.+|+++++.. 
T Consensus       153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~-  230 (597)
T 2xpi_A          153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FDRAKECYKEALMVD-  230 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-
Confidence            3455666778888888886666544444                4568899999999999997 999999999998753 


Q ss_pred             HhcCCCCCHHHHH-----------------------------------HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          254 IGANGKPSLELVM-----------------------------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       254 ~~~~~~~~~~~~~-----------------------------------~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                           +..+....                                   .+..++..|...|++++|+.+|++++..    
T Consensus       231 -----p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----  301 (597)
T 2xpi_A          231 -----AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----  301 (597)
T ss_dssp             -----TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----
T ss_pred             -----chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----
Confidence                 11111111                                   1122255566789999999999998876    


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                        +.    ...++..+|.+|...|++++|+.+|++++..        .|....++..++.++...|++++|+.++++++.
T Consensus       302 --~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  367 (597)
T 2xpi_A          302 --EK----SSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD  367 (597)
T ss_dssp             --GG----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --Cc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence              12    2345899999999999999999999999987        455667889999999999999999999999986


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      ..+..        ..++..+|.+|...|++++|+.+|++++..      .+....++..+|.+|...|++++|+.+|+++
T Consensus       368 ~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          368 RHPEK--------AVTWLAVGIYYLCVNKISEARRYFSKSSTM------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             HCTTS--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hCccc--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            54322        447888999999999999999999999853      3445678899999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      +..        .|....++..+|.+|...|++++|+.+|++++.+.         +....++..+|.+|...|++++|+.
T Consensus       434 ~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          434 ARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---------QYDPLLLNELGVVAFNKSDMQTAIN  496 (597)
T ss_dssp             HHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHhCCHHHHHH
Confidence            987        56667889999999999999999999999999883         2235679999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHH
Q 005139          539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE  618 (712)
Q Consensus       539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  618 (712)
                      +|++++.+.+.....+.....++..+|.+|...|++++|+.+|++++++.        +....++..+|.+|...|++++
T Consensus       497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~  568 (597)
T 2xpi_A          497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGL  568 (597)
T ss_dssp             HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHH
Confidence            99999999887633333346789999999999999999999999999862        1234789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005139          619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD  653 (712)
Q Consensus       619 A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  653 (712)
                      |+.+|++++++        +|+...++..|+.+|.
T Consensus       569 A~~~~~~~l~~--------~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          569 AITHLHESLAI--------SPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence            99999999999        9999999999998874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-30  Score=285.37  Aligned_cols=403  Identities=15%  Similarity=0.102  Sum_probs=332.7

Q ss_pred             cccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139          190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH  269 (712)
Q Consensus       190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~  269 (712)
                      +...+..+...|+|.+|+..+..+...+| ...++..+|.+++..|+ +++|+..+++++++.         |....++.
T Consensus         9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~   77 (514)
T 2gw1_A            9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGD-LKKVVEMSTKALELK---------PDYSKVLL   77 (514)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------SCCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhh-HHHHHHHHHHHhccC---------hHHHHHHH
Confidence            34455667788899999977777777777 48899999999999997 999999999999863         34467899


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc-----------------------------------------------c
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ-----------------------------------------------E  302 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------------------------~  302 (712)
                      .+|.+|..+|++++|+..|++++...+.....                                               .
T Consensus        78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (514)
T 2gw1_A           78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN  157 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence            99999999999999999999998765310000                                               0


Q ss_pred             ch-----------------------HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHh--CCCC----hhHH
Q 005139          303 HA-----------------------LAKFAGHMQLGDTYAM---LGQLENSLMCYTTGLEVQKQVL--GETD----PRVG  350 (712)
Q Consensus       303 ~~-----------------------~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~  350 (712)
                      .+                       ......+..+|.++..   .|++++|+.+|++++...+...  .+++    |...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (514)
T 2gw1_A          158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA  237 (514)
T ss_dssp             CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred             CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence            00                       0014457778888776   8999999999999999654443  2222    6778


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      .++..+|.++...|++++|+.++++++...+.         ..++..+|.++...|++++|+.+|++++.      ..+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~  302 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---------VNSYIYMALIMADRNDSTEYYNYFDKALK------LDSN  302 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHTSSCCTTGGGHHHHHHT------TCTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHhh------cCcC
Confidence            89999999999999999999999999987532         45789999999999999999999999983      4455


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ...++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++...      
T Consensus       303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------  368 (514)
T 2gw1_A          303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF------  368 (514)
T ss_dssp             CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS------
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------
Confidence            5678999999999999999999999999987        56667799999999999999999999999999983      


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISK  587 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~  587 (712)
                         +....++..+|.++...|++++|+.+|++++...+... .......++..+|.++..   .|++++|+.+|++++.+
T Consensus       369 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          369 ---PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             ---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             ---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence               23356789999999999999999999999999988763 222223478899999999   99999999999999986


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  652 (712)
                      .        +....++..+|.++...|++++|+.+|++++++        +|+...++..+....
T Consensus       445 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          445 D--------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAITFAE  493 (514)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHHHHHH
T ss_pred             C--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHHHHHH
Confidence            2        223478899999999999999999999999999        888777776665443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=5.2e-30  Score=279.01  Aligned_cols=407  Identities=14%  Similarity=0.057  Sum_probs=291.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005139          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (712)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~  317 (712)
                      .+.++..+++.+.....   ..++...+.+|..||.++..+|++++|+++|++|+++.+...+.......+.++.++|.+
T Consensus        27 ~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~  103 (472)
T 4g1t_A           27 GENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV  103 (472)
T ss_dssp             TCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence            45566666665544322   223344577889999999999999999999999999876544333222245578999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADR  395 (712)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  395 (712)
                      |..+|++++|+.+|++++.+.+...+..++..+.++..+|.++...|  +|++|+.+|++++.+.|..     +   .++
T Consensus       104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-----~---~~~  175 (472)
T 4g1t_A          104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-----P---EFT  175 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-----H---HHH
T ss_pred             HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-----H---HHH
Confidence            99999999999999999999988776666777888888888777654  7999999999999987543     2   245


Q ss_pred             HHHHHHH---HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          396 RLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGE  468 (712)
Q Consensus       396 ~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~  468 (712)
                      ..++.++   ...+++++|++.|++++.+      .|....++..+|..+.    ..|++++|+.++++++.+       
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-------  242 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-------  242 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------
Confidence            5666554   4568889999999999854      3444455666665554    457788999999999998       


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc------------------
Q 005139          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM------------------  530 (712)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------  530 (712)
                       .|....++..+|.+|...|++++|+.+|++++++         .|..+.++..+|.+|...                  
T Consensus       243 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~  312 (472)
T 4g1t_A          243 -APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL  312 (472)
T ss_dssp             -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred             -CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             7888889999999999999999999999999998         455677889999888654                  


Q ss_pred             -ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 005139          531 -NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (712)
Q Consensus       531 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~  609 (712)
                       +.+++|+..+++++.+.+...       .++..+|.+|...|++++|+.+|++++.+     ...+.....++..+|.+
T Consensus       313 ~~~~~~A~~~~~~a~~~~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~  380 (472)
T 4g1t_A          313 LELIGHAVAHLKKADEANDNLF-------RVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNF  380 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTC-------CCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhhcCCchh-------hhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence             346677888888877755442       36778999999999999999999999875     22222333456677754


Q ss_pred             -HHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhhhCCCChhHHHHHHHHHHHHHHhccHHHH
Q 005139          610 -CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSR  688 (712)
Q Consensus       610 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A  688 (712)
                       +...|++++|+.+|++++.+        .|+.......+..+...   .+.....+|.++.++..||.+|..+|++++|
T Consensus       381 ~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~~~~~l~~~---~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A  449 (472)
T 4g1t_A          381 QLYQMKCEDKAIHHFIEGVKI--------NQKSREKEKMKDKLQKI---AKMRLSKNGADSEALHVLAFLQELNEKMQQA  449 (472)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHHHHHHHHHH---HHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence             45789999999999999998        55544332222211111   1222345788888999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 005139          689 KAQSLETLLDANSR  702 (712)
Q Consensus       689 ~~~~l~~~l~~~p~  702 (712)
                      + +.|+++|+..|.
T Consensus       450 ~-~~y~kALe~~~~  462 (472)
T 4g1t_A          450 D-EDSERGLESGSL  462 (472)
T ss_dssp             --------------
T ss_pred             H-HHHHHHHhcCCC
Confidence            9 999999998876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=2e-28  Score=260.41  Aligned_cols=345  Identities=17%  Similarity=0.184  Sum_probs=300.1

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..+..+|.++...|++++|+.+|++++.+.     +.++.....++..+|.++...|++++|+.+|++++.+....  .
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   81 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   81 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence            5567889999999999999999999999885     55555456679999999999999999999999999998764  3


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----------------
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-----------------  407 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~-----------------  407 (712)
                      +.+..+.++..+|.++...|++++|+.++++++.+.+....  ....+.++..+|.++...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            45678899999999999999999999999999999988763  35667789999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (712)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (712)
                         +++|+.++.+++.+....++.+..+.++..+|.+|...|++++|+.++++++.+.....  +.+..+.++..+|.+|
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~  237 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY  237 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence               99999999999999888888888999999999999999999999999999999988753  3566778999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                      ...|++++|+.++++++.+....   .+......++..+|.+|...|++++|+.++++++.+.+.. +.......++..+
T Consensus       238 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l  313 (406)
T 3sf4_A          238 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWSL  313 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            99999999999999999998773   3455668899999999999999999999999999998886 5555667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  626 (712)
                      |.+|...|++++|+.+|++++.+....+..  .....++..+|.++...|+...+...+.+.
T Consensus       314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  373 (406)
T 3sf4_A          314 GNAYTALGNHDQAMHFAEKHLEISREVGDK--SGELTARLNLSDLQMVLGLSYSTNNSIMSE  373 (406)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            999999999999999999999999887643  456789999999999999875444433333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=1e-28  Score=266.89  Aligned_cols=353  Identities=14%  Similarity=0.107  Sum_probs=272.6

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005139          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL  288 (712)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~  288 (712)
                      .+......+|..+..++.+|..++..|+ +++|+.+|++++...         |..+.++..+|.+|...|++++|+.+|
T Consensus        14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~   83 (450)
T 2y4t_A           14 GTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDL   83 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5566677888999999999999999997 999999999998753         334778888999999999999999999


Q ss_pred             HHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH---HHHHHHHHHHHHhCC
Q 005139          289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG---ETCRYLAEAHVQALQ  365 (712)
Q Consensus       289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~  365 (712)
                      ++++++.     +..+    .++..+|.+|...|++++|+.+|++++.+        .|...   .++..++.++.    
T Consensus        84 ~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~----  142 (450)
T 2y4t_A           84 TKVIQLK-----MDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE----  142 (450)
T ss_dssp             HHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH----
T ss_pred             HHHHhcC-----CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH----
Confidence            9998875     3333    35888999999999999999999998876        45544   55555554421    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005139          366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (712)
Q Consensus       366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (712)
                                                ...+..+|.++...|++++|+.+|++++..      .|....++..+|.+|...
T Consensus       143 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~  190 (450)
T 2y4t_A          143 --------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKE  190 (450)
T ss_dssp             --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred             --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHC
Confidence                                      113456677788888888888888888743      344457788888888889


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH------
Q 005139          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG------  519 (712)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------  519 (712)
                      |++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+...      .......      
T Consensus       191 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~  256 (450)
T 2y4t_A          191 GEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVKK  256 (450)
T ss_dssp             TCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHH
Confidence            9999999988888887        4555678888888999999999999999888877322      2222211      


Q ss_pred             ---HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          520 ---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       520 ---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                         +..+|.++...|++++|+.+|++++.+.+.   .......++..+|.++...|++++|+.++++++.+        .
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~  325 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------E  325 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence               234499999999999999999999986433   12223467889999999999999999999999986        1


Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +....++..+|.+|...|++++|+.+|++++++        +|+...++..++.+....++
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhc
Confidence            223478999999999999999999999999998        88888899999977665543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=5.8e-28  Score=256.87  Aligned_cols=333  Identities=16%  Similarity=0.172  Sum_probs=295.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      +..+..+|.++...|++++|+.+|++++.+     .+.++ ..+.++..+|.++...|++++|+.++++++.+.....  
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--   81 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--   81 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence            445889999999999999999999999998     22233 3468899999999999999999999999999988765  


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------------------
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------------------  447 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  447 (712)
                      ..+..+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+                   
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence            3466688999999999999999999999999999988887778889999999999999999                   


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139          448 -YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (712)
Q Consensus       448 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (712)
                       +++|+.++++++.+.....  +.+....++..+|.+|...|++++|+.++++++.+....   .+....+.++..+|.+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~  236 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNA  236 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence             9999999999999988764  467788899999999999999999999999999998773   3455677899999999


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005139          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (712)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (712)
                      |...|++++|+.++++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+.  ......++..+
T Consensus       237 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l  313 (406)
T 3sf4_A          237 YIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSL  313 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence            999999999999999999999886 555566788999999999999999999999999999887654  34567899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       607 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      |.+|...|++++|+.+|++++++......  .+....++..+|.+|..+|+
T Consensus       314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~  362 (406)
T 3sf4_A          314 GNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGL  362 (406)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhH
Confidence            99999999999999999999999877633  56778899999999999987

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=3.1e-29  Score=277.54  Aligned_cols=385  Identities=17%  Similarity=0.137  Sum_probs=305.5

Q ss_pred             cccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005139          188 KKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC  267 (712)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  267 (712)
                      ..+...+..+...|++.+|+..+..+...+|....++..+|.+++..|+ +++|+..|++++.+.         |....+
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~   95 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK---------PDHSKA   95 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CchHHH
Confidence            3455677788999999999988999988999999999999999999997 999999999999864         445778


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc-------------------------------ch-HHH--------
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-------------------------------HA-LAK--------  307 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~-~~~--------  307 (712)
                      +..+|.++...|++++|+..|+ ++.+.+......                               .+ ...        
T Consensus        96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (537)
T 3fp2_A           96 LLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF  174 (537)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence            9999999999999999999995 654432111000                               00 000        


Q ss_pred             -------------------HHHHHHHH--------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh----HHHHHHHH
Q 005139          308 -------------------FAGHMQLG--------DTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR----VGETCRYL  356 (712)
Q Consensus       308 -------------------~~~~~~lg--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l  356 (712)
                                         ......++        ......|++++|+..|+++++..     ++++.    .+.++..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~  249 (537)
T 3fp2_A          175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYT  249 (537)
T ss_dssp             CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHH
Confidence                               00111222        22222345666666666665542     22222    36688999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005139          357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC  436 (712)
Q Consensus       357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  436 (712)
                      |.++...|++++|+.++++++.+.+.         ..++..+|.++...|++++|+.+|++++..      .+....++.
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~  314 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLADKENSQEFFKFFQKAVDL------NPEYPPTYY  314 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCC---------chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------CCCCHHHHH
Confidence            99999999999999999999987532         347889999999999999999999999853      345567899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                      .+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++...         |..
T Consensus       315 ~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------~~~  377 (537)
T 3fp2_A          315 HRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---------PTL  377 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCC
Confidence            9999999999999999999999998        66667899999999999999999999999999983         334


Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----------GNYSDSYDSFKNAIS  586 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~  586 (712)
                      ..++..+|.++...|++++|+.+|++++.+.+........ ...+..+|.++...          |++++|+.+|++++.
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG-IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST-THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH-HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999877433333 33567789999999          999999999999998


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +.        +....++..+|.+|...|++++|+.+|++++++
T Consensus       457 ~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          457 LD--------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            61        223478999999999999999999999999998

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=8.7e-30  Score=277.24  Aligned_cols=381  Identities=14%  Similarity=0.050  Sum_probs=272.9

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (712)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~  294 (712)
                      .+++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.+|++++.+
T Consensus        45 ~~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i  123 (472)
T 4g1t_A           45 QNREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV  123 (472)
T ss_dssp             CC---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3455667888999999999997 999999999999999877655556777889999999999999999999999999999


Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH---HhCCHHHH
Q 005139          295 PVIEEGQEHALAKFAGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV---QALQFSEA  369 (712)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A  369 (712)
                      .+...++.++. ...++..+|.++...  ++|++|+.+|++++++        +|....++..++.++.   ..+++++|
T Consensus       124 ~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~a  194 (472)
T 4g1t_A          124 CEKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNA  194 (472)
T ss_dssp             HHHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred             hHhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence            77655544332 234577788777665  4799999999999998        5666777777777755   45677899


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005139          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL  445 (712)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  445 (712)
                      +..+++++.+.+..        ..++..+|..+.    ..|++++|+.++++++.      ..|....++..+|.+|...
T Consensus       195 l~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~------~~~~~~~~~~~lg~~~~~~  260 (472)
T 4g1t_A          195 IDPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE------KAPGVTDVLRSAAKFYRRK  260 (472)
T ss_dssp             HHHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHH------HCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------hCccHHHHHHHHHHHHHHc
Confidence            99999999886433        224555665544    45788899999999874      3455677889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHhc
Q 005139          446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-------------------GKLRESKSYCENALRIYEK  506 (712)
Q Consensus       446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~  506 (712)
                      |++++|+..|++++++        +|....++..+|.+|...                   +.+++|+.+|++++.+   
T Consensus       261 ~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---  329 (472)
T 4g1t_A          261 DEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA---  329 (472)
T ss_dssp             TCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc---
Confidence            9999999999999998        888889999999988643                   3356777788888777   


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al  585 (712)
                            .+....++..+|.+|...|++++|+.+|++++.+.+.    ......++..+|.+ +...|++++|+.+|++++
T Consensus       330 ------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          330 ------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             ------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                  3334566889999999999999999999999975321    11222345566654 457899999999999998


Q ss_pred             HHHH-----------------HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005139          586 SKLR-----------------AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (712)
Q Consensus       586 ~~~~-----------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L  648 (712)
                      .+..                 ..... .+..+.++..||.+|..+|++++|+++|++|+++        .|....+...+
T Consensus       400 ~i~~~~~~~~~~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~--------~~~~p~a~~~~  470 (472)
T 4g1t_A          400 KINQKSREKEKMKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLES--------GSLIPSASSWN  470 (472)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC-------------------------------
T ss_pred             hcCcccHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCcHhhcC
Confidence            7521                 00000 1122468999999999999999999999999998        44444454444


Q ss_pred             H
Q 005139          649 A  649 (712)
Q Consensus       649 a  649 (712)
                      |
T Consensus       471 G  471 (472)
T 4g1t_A          471 G  471 (472)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=8.5e-28  Score=250.76  Aligned_cols=337  Identities=11%  Similarity=0.064  Sum_probs=277.7

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..+..+|.+++..|++++|+.+|++++...     +.++    .++..+|.++...|++++|+.+|++++.+       
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL-------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            5678889999999999999999999999875     4443    35999999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---hcCCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPA----SLEEAADRRLMGLICETKGDHEAALEHLVL  417 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~la~~~~~~g~~~~A~~~~~~  417 (712)
                       .|....++..+|.++...|++++|+.+|++++.+.+   ......    .......+..+|.++...|++++|+.++++
T Consensus        67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence             577778999999999999999999999999987654   221100    000011123348999999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (712)
Q Consensus       418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (712)
                      ++..      .|....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+|
T Consensus       146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9853      3445678999999999999999999999999987        6777789999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCChhHHHH---------HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 005139          498 ENALRIYEKPVPGVPPEEIASG---------LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY  568 (712)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  568 (712)
                      ++++.+...      .+.....         ...+|.++...|++++|+..+++++...+..   ......++..+|.++
T Consensus       212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~  282 (359)
T 3ieg_A          212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF  282 (359)
T ss_dssp             HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence            999998433      3322222         2355899999999999999999999875432   223345677899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005139          569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL  648 (712)
Q Consensus       569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L  648 (712)
                      ...|++++|+.+|++++.+     .   +....++..+|.++...|++++|+.+|++++++        +|+...++..|
T Consensus       283 ~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l  346 (359)
T 3ieg_A          283 SKDEKPVEAIRICSEVLQM-----E---PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL  346 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh-----C---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence            9999999999999999986     1   223478999999999999999999999999998        88888888888


Q ss_pred             HHHHHHccc
Q 005139          649 AGTYDAIGR  657 (712)
Q Consensus       649 a~~~~~~g~  657 (712)
                      +.++..+++
T Consensus       347 ~~~~~~~~~  355 (359)
T 3ieg_A          347 EKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=4.8e-27  Score=253.75  Aligned_cols=342  Identities=15%  Similarity=0.140  Sum_probs=285.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ....+..+|..+...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|++++...+..   
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---   93 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---   93 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Confidence            3456999999999999999999999999987        57778999999999999999999999999999886433   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH---HH------------HHHHHHHHHHcCCHHHH
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA---SV------------DCSIGDTYLSLSRYDEA  451 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A  451 (712)
                           ..++..+|.+|...|++++|+.+|++++.      ..|...   .+            +..+|.++...|++++|
T Consensus        94 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           94 -----TAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                 45789999999999999999999999873      233322   33            34557889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                      +.+|++++..        .|....++..+|.+|...|++++|+.+|++++.....         ...++..+|.+|...|
T Consensus       163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---------NTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---------CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcC
Confidence            9999999988        7777889999999999999999999999999998433         4678999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCCcHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 005139          532 ELEQAIKLLQKALKIYNDAPGQQSTVAGI---------EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (712)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (712)
                      ++++|+.+|++++.+.+..    ......         +..+|.++...|++++|+.+|++++.+    .+..+.....+
T Consensus       226 ~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~  297 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDH----KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRS  297 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHH
Confidence            9999999999999775433    111111         234499999999999999999999985    23333334568


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHH
Q 005139          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRL  675 (712)
Q Consensus       603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~l  675 (712)
                      +..+|.++...|++++|+.+|++++.+        +|+...++..+|.+|...|+       .+.+....|+...++..+
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  369 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL  369 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            999999999999999999999999998        88889999999999999999       455556788888999999


Q ss_pred             HHH------------HHHhc-----cHHHHHHHHHHH-HHHhccc-CC
Q 005139          676 AEL------------LKEAG-----RVRSRKAQSLET-LLDANSR-VN  704 (712)
Q Consensus       676 a~~------------~~~~g-----~~~~A~~~~l~~-~l~~~p~-i~  704 (712)
                      +.+            |...|     +.++++ +.|.+ +++.+|+ ..
T Consensus       370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd~~~  416 (450)
T 2y4t_A          370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPDNFQ  416 (450)
T ss_dssp             HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGGGCC
T ss_pred             HHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCCCCC
Confidence            955            44445     455667 78886 8889998 43

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=8.9e-27  Score=248.51  Aligned_cols=315  Identities=17%  Similarity=0.183  Sum_probs=279.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      +..+..+..+|..++..|++++|+.+|++++++.     +.++.....++..+|.+|...|++++|+.+|++++.+.+..
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            4567778889999999999999999999999985     55555556679999999999999999999999999998764


Q ss_pred             hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------
Q 005139          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD--------------  407 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~--------------  407 (712)
                        .+.+....++..+|.+|...|++++|+.++++++.+.+...  +....+.++..+|.+|...|+              
T Consensus       120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence              34578889999999999999999999999999999988765  346668899999999999999              


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (712)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (712)
                         +++|+.++.+++.+....++.+..+.++..+|.+|...|++++|+.++++++.+.....  +......++..+|.+|
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence               99999999999998888788888899999999999999999999999999999987753  3456677999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                      ...|++++|+.+|++++.+....   ........++..+|.+|...|++++|+.++++++.+.+.. +.......++..+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l  349 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL  349 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence            99999999999999999998763   3345568899999999999999999999999999998876 5555667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~  591 (712)
                      |.+|...|++++|+.+|++++.+.+.+
T Consensus       350 a~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          350 GNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999986544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.96  E-value=2.6e-26  Score=236.90  Aligned_cols=313  Identities=19%  Similarity=0.229  Sum_probs=273.9

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      ...+...|..+...|++++|+.+|++++.+.     +.++.....++..+|.++...|++++|+.++++++.+....  .
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   77 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   77 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence            4456778999999999999999999999975     55555456679999999999999999999999999998765  3


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----------------
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-----------------  407 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~-----------------  407 (712)
                      +.+....++..+|.++...|++++|+.++++++.+.+....  ....+.++..+|.++...|+                 
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            35677889999999999999999999999999999988753  35567789999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139          408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY  484 (712)
Q Consensus       408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  484 (712)
                         +++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.++
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence               99999999999988888788888899999999999999999999999999999987754  3566677999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                      ...|++++|+.++++++.+....   .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l  309 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL  309 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            99999999999999999998773   3455668899999999999999999999999999998876 5555667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (712)
                      |.+|...|++++|..+|++++.+.+..+
T Consensus       310 a~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          310 GNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999866543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.96  E-value=2.7e-26  Score=239.31  Aligned_cols=326  Identities=14%  Similarity=0.142  Sum_probs=267.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                      +..++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.++++++.+.+..    
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----   70 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----   70 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence            346899999999999999999999999997        67778899999999999999999999999999885432    


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHcCCHHHHH
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSI------------GDTYLSLSRYDEAG  452 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~  452 (712)
                          ..++..+|.++...|++++|+.+|++++.      ..|   ....++..+            |.++...|++++|+
T Consensus        71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----chHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence                34789999999999999999999999983      445   555555555            79999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139          453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE  532 (712)
Q Consensus       453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  532 (712)
                      .++++++..        .|....++..+|.++...|++++|+.++++++..         .|....++..+|.++...|+
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------KSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC
Confidence            999999998        6777889999999999999999999999999987         23346789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (712)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg  607 (712)
                      +++|+.++++++...+........     .......+|.++...|++++|+.+|++++...    +..+.....++..+|
T Consensus       204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence            999999999999875443110000     00113356899999999999999999998853    333334446788899


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHH
Q 005139          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLK  680 (712)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~  680 (712)
                      .++...|++++|+.+|++++.+        +|+...++..+|.+|...|+       .+.....+|+...++..|+.++.
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            9999999999999999999998        77777788888888887777       34444566777777777777766


Q ss_pred             Hhcc
Q 005139          681 EAGR  684 (712)
Q Consensus       681 ~~g~  684 (712)
                      ..++
T Consensus       352 ~~~~  355 (359)
T 3ieg_A          352 LLKQ  355 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=3.8e-26  Score=243.62  Aligned_cols=311  Identities=14%  Similarity=0.140  Sum_probs=275.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      ....+..+|..+...|++++|+.+|++++++     .++++ ..+.++..+|.+|...|++++|+.++++++.+..... 
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-  120 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-  120 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc-
Confidence            4456889999999999999999999999997     22233 3457899999999999999999999999999987765 


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-----------------H
Q 005139          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-----------------Y  448 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~  448 (712)
                       +.+..+.++..+|.+|...|++++|+.+|++++......++.+....++..+|.+|...|+                 +
T Consensus       121 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~  199 (411)
T 4a1s_A          121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL  199 (411)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence             3466788999999999999999999999999999988888888899999999999999999                 9


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Q 005139          449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE  528 (712)
Q Consensus       449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  528 (712)
                      ++|+.++++++.+.....  +.+....++..+|.+|...|++++|+.+|++++.+....   ........++..+|.+|.
T Consensus       200 ~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~  274 (411)
T 4a1s_A          200 TRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF---GDRAAERRANSNLGNSHI  274 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHH
Confidence            999999999999988774  357788899999999999999999999999999998763   234556778999999999


Q ss_pred             HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 005139          529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL  608 (712)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~  608 (712)
                      ..|++++|+.+|++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+.  ......++..+|.
T Consensus       275 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~  351 (411)
T 4a1s_A          275 FLGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGN  351 (411)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHHH
Confidence            9999999999999999999876 555566788999999999999999999999999999888754  3456789999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          609 ACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       609 ~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                      +|...|++++|+.+|++++.+.++
T Consensus       352 ~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          352 AHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.96  E-value=1.6e-25  Score=230.82  Aligned_cols=309  Identities=16%  Similarity=0.170  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                      ..+...|..+...|++++|+.+|+++++..     +.++ ....++..+|.++...|++++|+.++++++.+.....  .
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~   78 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D   78 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence            357889999999999999999999999972     2232 3467899999999999999999999999999987765  3


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR--------------------  447 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------  447 (712)
                      .+..+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|+                    
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            456678899999999999999999999999999998888888888999999999999999                    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH
Q 005139          448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (712)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (712)
                      +++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+....   ........++..+|.++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence            9999999999999988764  356778899999999999999999999999999998763   33556677999999999


Q ss_pred             HHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 005139          528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (712)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg  607 (712)
                      ...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+....+.  ......++..+|
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la  310 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLG  310 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence            99999999999999999999886 555566778999999999999999999999999999887765  345567899999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          608 LACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                      .+|...|++++|..+|++++.+..+
T Consensus       311 ~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          311 NAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=5.6e-27  Score=245.92  Aligned_cols=318  Identities=16%  Similarity=0.138  Sum_probs=250.7

Q ss_pred             HHHHHcCCHhHHHH-HHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          273 AIYCSLGQYNEAIP-VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (712)
Q Consensus       273 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (712)
                      .++...|+|++|+. .|++++.+.     +..+......++.+|.++...|++++|+.+|+++++.        +|....
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~   99 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME   99 (368)
T ss_dssp             -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            36777899999999 999999875     3333222345889999999999999999999999987        677788


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-  430 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-  430 (712)
                      ++..+|.++...|++++|+.+|++++.+.+..        ..++..+|.++...|++++|+.+|++++........... 
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  171 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  171 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            99999999999999999999999999886442        447899999999999999999999999854221110000 


Q ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          431 ---------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCEN  499 (712)
Q Consensus       431 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (712)
                               ....+..++.++ ..|++++|+.+|++++.+        .|.  ...++..+|.++...|++++|+.+|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     011122466666 899999999999999998        666  678999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (712)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (712)
                      ++.+         .|....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.
T Consensus       243 al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          243 ALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence            9998         33346789999999999999999999999999985433       4688999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC---CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          580 SFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       580 ~~~~al~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                      +|++++.+.....+.   ..+....++..+|.++..+|++++|..+++++++.+.+.++.
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  366 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL  366 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence            999999986543211   112235789999999999999999999999999998887664

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=1e-24  Score=238.12  Aligned_cols=381  Identities=14%  Similarity=0.157  Sum_probs=308.6

Q ss_pred             CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHhHHHHHHH
Q 005139          218 PGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLE  289 (712)
Q Consensus       218 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~  289 (712)
                      +..+.+++.+|..|+.    .++ +++|+.+|+++++.        .   .+.+++.||.+|..    .+++++|+.+|+
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            4567899999999998    776 99999999999863        1   25688899999999    999999999999


Q ss_pred             HhhchhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---
Q 005139          290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---  362 (712)
Q Consensus       290 ~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  362 (712)
                      ++.+..       +    ..+++.||.+|..    .+++++|+.+|+++.+.          ....++..||.+|..   
T Consensus       104 ~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g  162 (490)
T 2xm6_A          104 KAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG  162 (490)
T ss_dssp             HHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence            998642       2    2358899999999    89999999999998765          245789999999998   


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139          363 -ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCS  437 (712)
Q Consensus       363 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  437 (712)
                       .+++++|+.+|+++++..    .      ..++..+|.+|..    .+++++|+.+|+++...        ....+++.
T Consensus       163 ~~~d~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~  224 (490)
T 2xm6_A          163 VTRDYVMAREWYSKAAEQG----N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH  224 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence             889999999999998641    1      4578999999998    99999999999998741        22467889


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCC
Q 005139          438 IGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       438 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      +|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..    .+++++|+.+|+++.+.      
T Consensus       225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------  288 (490)
T 2xm6_A          225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------  288 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence            9999997    89999999999999864          124688899999999    99999999999999754      


Q ss_pred             CCCChhHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESM-----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSF  581 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  581 (712)
                           ....++..||.+|...     +++++|+.+|+++.+.     +.    ..+++.+|.+|...|   ++++|+.+|
T Consensus       289 -----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~  354 (490)
T 2xm6_A          289 -----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF  354 (490)
T ss_dssp             -----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence                 1256788999999998     9999999999999874     21    357889999999866   899999999


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---
Q 005139          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---  654 (712)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~---  654 (712)
                      +++++.       .   ...+++.||.+|..    .+++++|+.+|+++++.          ....++++||.+|..   
T Consensus       355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence            999873       1   23789999999999    89999999999999874          236789999999998   


Q ss_pred             -ccc-------hhhhCCCC---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          655 -IGR-------EEKLGTAN---PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       655 -~g~-------~~~l~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                       .++       ++......   |..+.+...|+.++...  ...|. +....+++..|.
T Consensus       415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~-~~a~~~~~~~~~  470 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAE-LLSQQYIEKYAP  470 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHH-HHHHHHHHHHCH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHH-HHHHHHHHHHHH
Confidence             666       22222222   66888888998887754  34444 444455554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=5.3e-26  Score=234.32  Aligned_cols=306  Identities=15%  Similarity=0.131  Sum_probs=253.6

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      .....+.....++.+|..++..|+ +++|+.+|++++...         |....++..++.++...|++++|+.++++++
T Consensus        14 ~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~   83 (330)
T 3hym_B           14 SVDGLQENLDVVVSLAERHYYNCD-FKMCYKLTSVVMEKD---------PFHASCLPVHIGTLVELNKANELFYLSHKLV   83 (330)
T ss_dssp             ------CCCTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhhchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC---------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334455666788999999999997 999999999998753         2234566778999999999999999999999


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK  371 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  371 (712)
                      ...     +.++.    ++..+|.++...| ++++|+.+|++++.+        .|....++..+|.++...|++++|+.
T Consensus        84 ~~~-----~~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~  146 (330)
T 3hym_B           84 DLY-----PSNPV----SWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMA  146 (330)
T ss_dssp             HHC-----TTSTH----HHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhC-----cCCHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHH
Confidence            875     44443    4899999999999 999999999999987        56777889999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 005139          372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA  451 (712)
Q Consensus       372 ~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  451 (712)
                      ++++++.+.+...        ..+..+|.++...|++++|+.+|++++      ...|....++..+|.++...|++++|
T Consensus       147 ~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~l~~~~~~~~~~~~A  212 (330)
T 3hym_B          147 AYFTAAQLMKGCH--------LPMLYIGLEYGLTNNSKLAERFFSQAL------SIAPEDPFVMHEVGVVAFQNGEWKTA  212 (330)
T ss_dssp             HHHHHHHHTTTCS--------HHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhccccH--------HHHHHHHHHHHHHhhHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHcccHHHH
Confidence            9999999876543        267789999999999999999999998      34566678899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc
Q 005139          452 GFAYQKALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (712)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (712)
                      +.++++++.+......... +....++..+|.++...|++++|+.+|++++.+.         +....++..+|.++...
T Consensus       213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~  283 (330)
T 3hym_B          213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---------PQNASTYSAIGYIHSLM  283 (330)
T ss_dssp             HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC---------ccchHHHHHHHHHHHHh
Confidence            9999999998665443221 4556799999999999999999999999999983         33467899999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH-HHcCCHH
Q 005139          531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY-YMLGNYS  575 (712)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  575 (712)
                      |++++|+.+|++++++.+..       ..++..++.++ ...|+.+
T Consensus       284 g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          284 GNFENAVDYFHTALGLRRDD-------TFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TCHHHHHHHHHTTTTTCSCC-------HHHHHHHHHHHHTTTTC--
T ss_pred             ccHHHHHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhCchh
Confidence            99999999999998765433       45778889888 4555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=231.43  Aligned_cols=293  Identities=16%  Similarity=0.114  Sum_probs=255.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      .+..+|..+...|++++|+.+|++++..        +|....++..++.++...|++++|+.++++++...+..      
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------   89 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN------   89 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------
Confidence            3788999999999999999999999987        56667788889999999999999999999999876543      


Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          390 EEAADRRLMGLICETKG-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (712)
                        ..++..+|.++...| ++++|+.+|++++.      ..+....++..+|.++...|++++|+.+|++++.+       
T Consensus        90 --~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------  154 (330)
T 3hym_B           90 --PVSWFAVGCYYLMVGHKNEHARRYLSKATT------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------  154 (330)
T ss_dssp             --THHHHHHHHHHHHSCSCHHHHHHHHHHHHT------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence              237899999999999 99999999999983      45566678999999999999999999999999998       


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                       .|....++..+|.++...|++++|+.+|++++.+.         |....++..+|.++...|++++|+.++++++.+.+
T Consensus       155 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  224 (330)
T 3hym_B          155 -MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK  224 (330)
T ss_dssp             -TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             -ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence             66666788889999999999999999999999873         33467899999999999999999999999999987


Q ss_pred             hCCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          549 DAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA  626 (712)
Q Consensus       549 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  626 (712)
                      ......  +....++..+|.++...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            653221  2334688899999999999999999999999862        122478999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHH-HHccc
Q 005139          627 RSILEQECGPYHPDTLGVYSNLAGTY-DAIGR  657 (712)
Q Consensus       627 l~~~~~~~~~~~p~~~~~~~~La~~~-~~~g~  657 (712)
                      +++        .|+...++..++.++ ...|+
T Consensus       297 l~~--------~p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          297 LGL--------RRDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             TTT--------CSCCHHHHHHHHHHHHTTTTC
T ss_pred             Hcc--------CCCchHHHHHHHHHHHHHhCc
Confidence            998        888899999999988 45554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=4.6e-24  Score=225.23  Aligned_cols=353  Identities=12%  Similarity=0.061  Sum_probs=276.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHcCCHhHHH-----------H
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-AAIYCSLGQYNEAI-----------P  286 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l-a~~~~~~g~~~~A~-----------~  286 (712)
                      +.....++-....+..++ +++|..+++++.......   ..+.+....+..+ .......+.+..+.           .
T Consensus        10 ~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~   85 (383)
T 3ulq_A           10 SSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD   85 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence            455666777777888886 999999999987766443   2334433222222 22233344555554           5


Q ss_pred             HHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH
Q 005139          287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF  366 (712)
Q Consensus       287 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  366 (712)
                      .+++.-....    +.........++.+|.++...|++++|+.+|++++.+....  ++.+..+.++..+|.+|...|++
T Consensus        86 ~~~~i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~  159 (383)
T 3ulq_A           86 LLLEIDKKQA----RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQT  159 (383)
T ss_dssp             HHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCC----CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence            5554322210    11112233356779999999999999999999999986553  33456889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 005139          367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (712)
Q Consensus       367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (712)
                      ++|+.++++++.+.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+|
T Consensus       160 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  238 (383)
T 3ulq_A          160 YFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS  238 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence            9999999999999988753 356678899999999999999999999999999999988888899999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (712)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (712)
                      ++++|+.+|++++.+.+....  .+..+.++..+|.+|..+|++++|+.++++++.+.....    .+.....+..+|.+
T Consensus       239 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~  312 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKSL  312 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Confidence            999999999999999887641  277899999999999999999999999999999987642    33344447789999


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      +...|++    ..+++++...... +..+....++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus       313 ~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          313 YLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            9999995    4455555555554 444566678889999999999999999999999998776654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=5.6e-26  Score=238.34  Aligned_cols=316  Identities=15%  Similarity=0.100  Sum_probs=248.4

Q ss_pred             HHHHcCCCHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHH
Q 005139          230 ELISSGDNPQKALE-LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKF  308 (712)
Q Consensus       230 ~~~~~g~~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  308 (712)
                      ++...|+ |++|+. .|.+++.+.     ..........++.+|.++...|++++|+.+|+++++..     +.++    
T Consensus        34 ~~~~~~~-~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~----   98 (368)
T 1fch_A           34 AHPWLSD-YDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHM----   98 (368)
T ss_dssp             -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH----
T ss_pred             hhHHHHH-HHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----
Confidence            4455565 899998 888887542     11111124567789999999999999999999999875     4443    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS  388 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  388 (712)
                      .++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.++++++.+.+.......
T Consensus        99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  170 (368)
T 1fch_A           99 EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT  170 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            35899999999999999999999999998        5777889999999999999999999999999987655432111


Q ss_pred             H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          389 L--------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKA  458 (712)
Q Consensus       389 ~--------~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a  458 (712)
                      .        .....+..++.++ ..|++++|+.+|++++..      .|.  ...++..+|.++...|++++|+.+|+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  243 (368)
T 1fch_A          171 PAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA  243 (368)
T ss_dssp             ---------------CTTHHHH-HHHHHHHHHHHHHHHHHH------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            0        0011222566666 999999999999999854      233  5678899999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK  538 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (712)
                      +.+        .|....++..+|.++...|++++|+.+|++++.+         .|....++..+|.+|...|++++|+.
T Consensus       244 l~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          244 LSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---------QPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            998        6777889999999999999999999999999998         34457789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139          539 LLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (712)
Q Consensus       539 ~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (712)
                      +|++++.+.+...+.    ......++..+|.+|...|++++|..++.++++.++...
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  364 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF  364 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence            999999998876221    123357899999999999999999999999998876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.5e-23  Score=221.31  Aligned_cols=351  Identities=12%  Similarity=0.016  Sum_probs=270.1

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHH--HHHHHHcCCHHHHH-----------HH
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSL-----------MC  330 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~-----------~~  330 (712)
                      .+....+-...+...+++++|..+++++........  .+..  +..++.+  .......+.+..+.           ..
T Consensus        11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~--~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~   86 (383)
T 3ulq_A           11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME--EDQD--LHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL   86 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC--CCHH--HHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc--cchH--HHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence            344444456667889999999999999866543221  1221  1122222  22233344444444           44


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 005139          331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA  410 (712)
Q Consensus       331 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~  410 (712)
                      +++.-......   +.......++.+|.++...|++++|+.++++++.+.....  +....+.++..+|.+|...|++++
T Consensus        87 ~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~  161 (383)
T 3ulq_A           87 LLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYF  161 (383)
T ss_dssp             HHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHH
Confidence            44432221110   0011223556699999999999999999999999877664  446678899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 005139          411 ALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK  489 (712)
Q Consensus       411 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  489 (712)
                      |+.++.+++.+....++ .+..+.++.++|.+|..+|++++|+.+|++++++.....  +.+..+.++.++|.+|..+|+
T Consensus       162 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~  239 (383)
T 3ulq_A          162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQ  239 (383)
T ss_dssp             HHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCC
Confidence            99999999999988776 678889999999999999999999999999999988763  467778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005139          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (712)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (712)
                      +++|+.+|++++.+....   .+.+..+.++..+|.+|..+|++++|+.++++++.+.+.. +...... .+..+|.+|.
T Consensus       240 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~-~~~~l~~~~~  314 (383)
T 3ulq_A          240 YEDAIPYFKRAIAVFEES---NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLS-EFEFLKSLYL  314 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHH-HHHHHHHHHh
Confidence            999999999999998774   2236678999999999999999999999999999998876 3333333 3677999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                      ..|++    ..+++++..+++..  ..+....++..+|.+|...|++++|..+|++++.+.+++...
T Consensus       315 ~~~~~----~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~  375 (383)
T 3ulq_A          315 SGPDE----EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGG  375 (383)
T ss_dssp             SSCCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CCCcH----HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            99995    45556666665553  335567889999999999999999999999999997766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=2.6e-25  Score=233.19  Aligned_cols=288  Identities=14%  Similarity=0.123  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                      ...++.+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+.+..    
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----  132 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----  132 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----
Confidence            345899999999999999999999999998        67778999999999999999999999999999986433    


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                          ..++..+|.+|...|++++|+.+|++++..........    .....+..+|.++...|++++|+.+|++++.+  
T Consensus       133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  206 (365)
T 4eqf_A          133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--  206 (365)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--
T ss_pred             ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--
Confidence                45799999999999999999999999986533221111    12345566799999999999999999999998  


Q ss_pred             HhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          464 TNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       464 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                            .|.  ...++..+|.+|...|++++|+.+|++++.+         .|....++..+|.+|...|++++|+.+|+
T Consensus       207 ------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          207 ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------RPEDYSLWNRLGATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             ------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                  555  6789999999999999999999999999998         33457789999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHHHhCCHH
Q 005139          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----AFFGVALNQMGLACVQRYSIN  617 (712)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~  617 (712)
                      +++.+.+..       ..++..+|.+|...|++++|+.+|++++.+........+    .....++..++.++..+|+.+
T Consensus       272 ~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          272 RALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            999985543       568899999999999999999999999998765433211    113578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 005139          618 EAVELFEEARSILEQECG  635 (712)
Q Consensus       618 ~A~~~~~~al~~~~~~~~  635 (712)
                      .|..+.++.+..+++.++
T Consensus       345 ~a~~~~~~~l~~~~~~~~  362 (365)
T 4eqf_A          345 LFQAANLGDLDVLLRAFN  362 (365)
T ss_dssp             HHHHHHTTCCGGGTTTTT
T ss_pred             HHHHHHHhhHHHHHHhcC
Confidence            999998887777665544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=8.6e-24  Score=230.88  Aligned_cols=356  Identities=13%  Similarity=0.055  Sum_probs=292.5

Q ss_pred             cccccccCccccccCCCCCChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (712)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~  275 (712)
                      .+++.+|+..+..+...  ..+.+++.+|..|..    .++ +++|+.+|++|...           ..+.+++.||.+|
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y  121 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALK-----------GLPQAQQNLGVMY  121 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence            45666666444444332  567899999999998    876 99999999999863           1256788899999


Q ss_pred             HH----cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          276 CS----LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       276 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      ..    .+++++|+.+|+++.+..       +    ..+++.||.+|..    .+++++|+.+|+++++.          
T Consensus       122 ~~g~g~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------  180 (490)
T 2xm6_A          122 HEGNGVKVDKAESVKWFRLAAEQG-------R----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----------  180 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------
Confidence            99    899999999999997642       2    2358999999998    89999999999999875          


Q ss_pred             hHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 005139          348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLAS  419 (712)
Q Consensus       348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al  419 (712)
                      ....++..||.+|..    .+++++|+.+|+++++..    .      ..++..+|.+|..    .+++++|+.+|++++
T Consensus       181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  250 (490)
T 2xm6_A          181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----D------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA  250 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            235789999999998    899999999999998642    1      3478899999997    899999999999987


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CCH
Q 005139          420 MTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-----GKL  490 (712)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~  490 (712)
                      ..        ....+++.+|.+|..    .+++++|+.+|+++.+.          ....++..||.+|...     +++
T Consensus       251 ~~--------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~~~~g~~~~~  312 (490)
T 2xm6_A          251 EQ--------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----------GNSDGQYYLAHLYDKGAEGVAKNR  312 (490)
T ss_dssp             TT--------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred             HC--------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCH
Confidence            31        235678899999999    99999999999999764          2246889999999998     999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                      ++|+.+|+++++..           ...++..+|.+|...|   ++++|+.+|+++++.     +.    ..+++.+|.+
T Consensus       313 ~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~Lg~~  372 (490)
T 2xm6_A          313 EQAISWYTKSAEQG-----------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GE----KAAQFNLGNA  372 (490)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CC----HHHHHHHHHH
Confidence            99999999998751           2467899999999866   899999999999875     11    4688999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 005139          568 YYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHP  639 (712)
Q Consensus       568 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p  639 (712)
                      |..    .+++++|+.+|+++++.       ..   ..++..||.+|..    .+++++|+.+|++|++.-     ++.|
T Consensus       373 y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~  437 (490)
T 2xm6_A          373 LLQGKGVKKDEQQAAIWMRKAAEQ-------GL---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND-----MNLF  437 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH-----CCHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CCCc
Confidence            999    89999999999999873       12   4789999999999    899999999999999981     1115


Q ss_pred             hhHHHHHHHHHHHH
Q 005139          640 DTLGVYSNLAGTYD  653 (712)
Q Consensus       640 ~~~~~~~~La~~~~  653 (712)
                      ....+..+|+.++.
T Consensus       438 ~~~~a~~~l~~~~~  451 (490)
T 2xm6_A          438 GTENRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHHHHTTSCH
T ss_pred             CCHHHHHHHHhcCH
Confidence            57778888876644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=9.4e-25  Score=228.86  Aligned_cols=285  Identities=15%  Similarity=0.074  Sum_probs=232.9

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..++.+|.++...|++++|+.+|++++...     +.++    .++..+|.+|...|++++|+.+|++++.+       
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------  128 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----PGDA----EAWQFLGITQAENENEQAAIVALQRCLEL-------  128 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            4567889999999999999999999999875     4443    35999999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                       +|....++..+|.+|...|++++|+.++++++.+.+........  ..+..+..+|.++...|++++|+.+|++++.. 
T Consensus       129 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-  206 (365)
T 4eqf_A          129 -QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-  206 (365)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-
T ss_pred             -CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Confidence             67778899999999999999999999999999987765432111  12345566799999999999999999999864 


Q ss_pred             HhCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          423 IANDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       423 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                           .|.  ...++..+|.+|...|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|+++
T Consensus       207 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          207 -----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             -----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 222  4678899999999999999999999999998        7777889999999999999999999999999


Q ss_pred             HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-----CcHHHHHHHHHHHHHHcCCHH
Q 005139          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----STVAGIEAQMGVMYYMLGNYS  575 (712)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~  575 (712)
                      +.+         .|....++..+|.+|...|++++|+.+|++++.+.+...+..     .....++..++.++...|+.+
T Consensus       274 l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          274 LEI---------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHH---------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             Hhc---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            998         344578899999999999999999999999999998764421     123468899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 005139          576 DSYDSFKNAISKLR  589 (712)
Q Consensus       576 ~A~~~~~~al~~~~  589 (712)
                      .|..+..+.+..++
T Consensus       345 ~a~~~~~~~l~~~~  358 (365)
T 4eqf_A          345 LFQAANLGDLDVLL  358 (365)
T ss_dssp             HHHHHHTTCCGGGT
T ss_pred             HHHHHHHhhHHHHH
Confidence            99988887666543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.93  E-value=1.7e-22  Score=212.81  Aligned_cols=340  Identities=13%  Similarity=0.067  Sum_probs=260.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--HHHcCCHhHHH---------HHHHHhhchhh
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI--YCSLGQYNEAI---------PVLEQSIEIPV  296 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~--~~~~g~~~~A~---------~~~~~al~~~~  296 (712)
                      -..++..++ +++|..+++++...+....   .+.... .++.+-..  ....+.+..+.         ..++..-....
T Consensus        19 wy~~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~   93 (378)
T 3q15_A           19 WYKMIRQFS-VPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK   93 (378)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred             HHHHHHHcC-HHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence            334466765 9999999999877654432   233333 33332221  22233433333         44444322211


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                          +.........++.+|..+...|++++|+.+|++++.+....  .+.+..+.++..+|.+|...|+++.|+.+++++
T Consensus        94 ----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           94 ----KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                11222234467889999999999999999999999986553  334678899999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (712)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (712)
                      +.+.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.+|+
T Consensus       168 l~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          168 LDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999987653 2346688999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139          457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (712)
                      +++.+.+...   +|....++..+|.++...|++++|+.++++++.+.....    .+.....+..++.++...++.   
T Consensus       247 ~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~---  316 (378)
T 3q15_A          247 KAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE---  316 (378)
T ss_dssp             HHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH---
T ss_pred             HHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH---
Confidence            9999988764   666689999999999999999999999999999976632    233444578889999988883   


Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (712)
                       ..+.+++...... +..+....++..+|.+|...|++++|..+|++++.+.+++
T Consensus       317 -~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          317 -RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             -HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence             3333444443333 3344556778899999999999999999999999987654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=1.7e-23  Score=215.25  Aligned_cols=289  Identities=14%  Similarity=0.114  Sum_probs=238.3

Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (712)
Q Consensus       302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (712)
                      ..+......++.+|..+...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+.+
T Consensus        15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~   86 (327)
T 3cv0_A           15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP   86 (327)
T ss_dssp             SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            333333445889999999999999999999999987        577788999999999999999999999999998854


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH--------------HH-HHHHcC
Q 005139          382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--------------GD-TYLSLS  446 (712)
Q Consensus       382 ~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g  446 (712)
                      ..        ..++..+|.++...|++++|+.++++++....      .....+..+              +. ++...|
T Consensus        87 ~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (327)
T 3cv0_A           87 KD--------IAVHAALAVSHTNEHNANAALASLRAWLLSQP------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN  152 (327)
T ss_dssp             TC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST------TTTTC--------------------CCTTSHH
T ss_pred             CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence            32        34788999999999999999999999985322      212222222              44 588899


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (712)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (712)
                      ++++|+.++++++..        .|....++..+|.++...|++++|+.++++++.+.         +....++..+|.+
T Consensus       153 ~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~  215 (327)
T 3cv0_A          153 EYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------PDDAQLWNKLGAT  215 (327)
T ss_dssp             HHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHH
Confidence            999999999999988        66678899999999999999999999999999983         3346789999999


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----hHHHHH
Q 005139          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----AFFGVA  602 (712)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~  602 (712)
                      +...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++.+.........    .....+
T Consensus       216 ~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  288 (327)
T 3cv0_A          216 LANGNRPQEALDAYNRALDINPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM  288 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence            999999999999999999875543       457889999999999999999999999987543221111    114678


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          603 LNQMGLACVQRYSINEAVELFEEARSILEQECGP  636 (712)
Q Consensus       603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  636 (712)
                      +..+|.++...|++++|..++++++..+...++.
T Consensus       289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  322 (327)
T 3cv0_A          289 WDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL  322 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence            9999999999999999999999999987776553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=1.2e-21  Score=206.34  Aligned_cols=338  Identities=13%  Similarity=0.051  Sum_probs=255.0

Q ss_pred             HHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH--HHHcCCHHHHH---------HHHHHHHHHHHHHhC
Q 005139          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT--YAMLGQLENSL---------MCYTTGLEVQKQVLG  343 (712)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~  343 (712)
                      +...+++++|..+++++.........  +.  .+..++.+-..  ....+.+..+.         ..+++.-......  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~--~~--~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--   95 (378)
T 3q15_A           22 MIRQFSVPDAEILKAEVEQDIQQMEE--DQ--DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--   95 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHGGGBCC--CH--HHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHhcc--cH--HHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence            47889999999999987665433221  21  12223333221  11122222222         3333321111110  


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                       ++......++.+|..+...|++++|+.+|++++.+.....  +.+..+.++..+|.+|...|++++|+.++.+++.+..
T Consensus        96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  172 (378)
T 3q15_A           96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ  172 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence             0112334677899999999999999999999999987765  3467788999999999999999999999999999988


Q ss_pred             hCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          424 ANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       424 ~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                      ...+ .+..+.++.++|.+|..+|++++|+.+|++++++.+...  +.+..+.++.++|.+|..+|++++|+.+|++++.
T Consensus       173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7765 457889999999999999999999999999999988764  3456788999999999999999999999999999


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      +.....    .+..+.++..+|.++...|++++|+.++++++.+.... +..... ..+..++.++...++.    ..+.
T Consensus       251 ~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~-~~~~~l~~ly~~~~~~----~~~~  320 (378)
T 3q15_A          251 VSREKV----PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYK-ELFLFLQAVYKETVDE----RKIH  320 (378)
T ss_dssp             HHHHHC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-CCSCHH-HHHHHHHHHHSSSCCH----HHHH
T ss_pred             HHHhhC----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHH-HHHHHHHHHHhCCCcH----HHHH
Confidence            877532    45558899999999999999999999999999997765 333333 3567888888888883    3344


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      +++..++...  ..+....++..+|.+|...|++++|..+|++++++.+++..
T Consensus       321 ~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          321 DLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            4444444422  23455678889999999999999999999999999776643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=4.1e-23  Score=212.32  Aligned_cols=290  Identities=14%  Similarity=0.097  Sum_probs=237.6

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (712)
                      ....++.+|..+...|++++|+.+|++++...     +..+    .++..+|.++...|++++|+.+|++++.+      
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PERE----EAWRSLGLTQAENEKDGLAIIALNHARML------   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            34567789999999999999999999999875     3333    35889999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHH-HH-HHHHcCCHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE-----EAADRRLM-GL-ICETKGDHEAALEHLV  416 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~a~~~~~l-a~-~~~~~g~~~~A~~~~~  416 (712)
                        .|....++..+|.++...|++++|+.++++++...+.........     .......+ +. ++...|++++|+.+++
T Consensus        85 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  162 (327)
T 3cv0_A           85 --DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH  162 (327)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred             --CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence              577788999999999999999999999999998766554321000     00001122 44 5888999999999999


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 005139          417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY  496 (712)
Q Consensus       417 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  496 (712)
                      +++..      .+....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+
T Consensus       163 ~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~  228 (327)
T 3cv0_A          163 AALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDA  228 (327)
T ss_dssp             HHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99853      3345678999999999999999999999999998        677788999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc-----HHHHHHHHHHHHHHc
Q 005139          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYML  571 (712)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~  571 (712)
                      |++++.+.         +....++..+|.++...|++++|+.+|++++.+.+...+....     ...++..+|.++...
T Consensus       229 ~~~a~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          229 YNRALDIN---------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             HHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcC---------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            99999983         3346789999999999999999999999999998764222211     567899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCC
Q 005139          572 GNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      |++++|..++++++..+....+
T Consensus       300 g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          300 NRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             TCHHHHHHHTTCCSHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhcchhhh
Confidence            9999999999999988765543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=3.5e-22  Score=203.72  Aligned_cols=280  Identities=19%  Similarity=0.175  Sum_probs=229.7

Q ss_pred             hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT  421 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~  421 (712)
                      .+.++|....++..+|.++...|++++|+.++++++.+.....++..+..+.++..+|.++...|++++|+.+|++++..
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999888766667888889999999999999999999999999988


Q ss_pred             HHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          422 MIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (712)
Q Consensus       422 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (712)
                      ....  .+.+....++..+|.+|...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.+|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7665  67788899999999999999999999999999999998887777899999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC----CC-CC---cHHHHHHHHHHHHHHc
Q 005139          500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP----GQ-QS---TVAGIEAQMGVMYYML  571 (712)
Q Consensus       500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-~~---~~~~~~~~la~~~~~~  571 (712)
                      ++.+..... +...+....++..+|.+|...|++++|+.++++++.+.+...    .. ..   .....+..++..+...
T Consensus       179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3nf1_A          179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG  257 (311)
T ss_dssp             HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence            999987753 345677889999999999999999999999999999865420    11 01   1223344455556666


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (712)
Q Consensus       572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  630 (712)
                      +.+.+|...+.++..        ..+....++..+|.+|...|++++|+.+|++++++.
T Consensus       258 ~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          258 TSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            777777777777765        245677899999999999999999999999999983

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=5e-22  Score=202.55  Aligned_cols=286  Identities=20%  Similarity=0.244  Sum_probs=233.2

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005139          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL  288 (712)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~  288 (712)
                      .....+.++|..+.++..+|..++..|+ +++|+.++++++.+.+... +...+..+.++..+|.+|...|++++|+.+|
T Consensus        15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~   92 (311)
T 3nf1_A           15 YFQGGGYEIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLL   92 (311)
T ss_dssp             SCSSSCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3445677889999999999999999997 9999999999999987764 3345788999999999999999999999999


Q ss_pred             HHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHH
Q 005139          289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSE  368 (712)
Q Consensus       289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  368 (712)
                      ++++.+.....+.+.+. ...++..+|.+|...|++++|+.+|++++.+.....+.+++....++..+|.++...|++++
T Consensus        93 ~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  171 (311)
T 3nf1_A           93 NDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE  171 (311)
T ss_dssp             HHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence            99999876655444443 45679999999999999999999999999999888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---CC------hhHHHHHHHHH
Q 005139          369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND---QD------AEVASVDCSIG  439 (712)
Q Consensus       369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~------~~~~~~~~~la  439 (712)
                      |+.++++++.+.........+....++..+|.++...|++++|+.+|++++.......   ..      ......+..++
T Consensus       172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
T 3nf1_A          172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK  251 (311)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence            9999999999988876666788888999999999999999999999999997654311   11      12334445555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ..+...+.+.+|...+.+++..        ++....++..+|.+|...|++++|+.+|++++++.+
T Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          252 GKQKDGTSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ------CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CchhhHHHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            6666677777888888888775        899999999999999999999999999999999854

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=1.5e-22  Score=202.43  Aligned_cols=261  Identities=9%  Similarity=-0.012  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      ..++.+|.+++..|++++|+.+|+++++..+....        ++..+|.++...|++++|+.+|++++.   ...+...
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~   72 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKA   72 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhH
Confidence            46788999999999999999999999988765432        688999999999999999999999985   2233344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ...++..+|.++...|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++.+       
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------  137 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------  137 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence            4778999999999999999999999999998        7777789999999999999999999999999887       


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISK  587 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  587 (712)
                        .|....++..+|......+++++|+.+|++++++.+..       ..++..+|.++...|+   +++|+..|++++++
T Consensus       138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  208 (272)
T 3u4t_A          138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV  208 (272)
T ss_dssp             --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence              33457789999955555669999999999999986654       4678899999999999   99999999999998


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  654 (712)
                      .....+........++..+|.+|...|++++|+.+|++++++        +|+...++..++.+...
T Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-----
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcc
Confidence            765443322335678999999999999999999999999999        88888888888776544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.90  E-value=2.5e-20  Score=195.72  Aligned_cols=310  Identities=10%  Similarity=-0.017  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      ...++..+|.++...|++++|+.++++++...    ...++ ....++..+|.++...|++++|+.++++++.+.+....
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   88 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence            45567889999999999999999999999863    22222 35567889999999999999999999999999988753


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD--AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                        ....+.++..+|.++...|++++|+.++++++......+..  +....++.++|.++...|++++|+.++++++.+..
T Consensus        89 --~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           89 --WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence              34456678899999999999999999999999888766554  67788899999999999999999999999999865


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                      ...   .+....++..+|.++...|++++|..++++++.+.....  ............++.++...|++++|..+++++
T Consensus       167 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          167 SYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK--YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             TSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            542   233567889999999999999999999999999876531  111112222234566788999999999999998


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      +...+   +........+..+|.++...|++++|...+++++......+.  ......++..+|.++...|++++|..+|
T Consensus       242 ~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          242 AKPEF---ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CCCCC---TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCCC---CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            75321   111222335678999999999999999999999998877553  2344568889999999999999999999


Q ss_pred             HHHHHHHHH
Q 005139          624 EEARSILEQ  632 (712)
Q Consensus       624 ~~al~~~~~  632 (712)
                      ++++.+...
T Consensus       317 ~~al~~~~~  325 (373)
T 1hz4_A          317 LDALKLANR  325 (373)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999998654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.90  E-value=1.3e-20  Score=198.02  Aligned_cols=313  Identities=11%  Similarity=0.004  Sum_probs=251.7

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (712)
                      ...++..+|.++...|++++|+.++++++...+    ...+.....++..+|.++...|++++|+.++++++.+.+..  
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   86 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   86 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence            356677889999999999999999999998752    22233345578999999999999999999999999998763  


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                      .+......++..+|.++...|++++|+.++++++.+.+....+..+....++..+|.++...|++++|+.++.+++....
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            12234566789999999999999999999999999998877654556677889999999999999999999999998766


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS--VFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                      ..+.. ....++..+|.++...|++++|..++++++.+.....   .+....  ....++.++...|++++|..++.+++
T Consensus       167 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          167 SYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             TSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            54433 3567889999999999999999999999998865432   221122  22345566889999999999999987


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (712)
                      ....    + ........+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|...+
T Consensus       243 ~~~~----~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          243 KPEF----A-NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CCCC----T-TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCC----C-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5421    1 112223457889999999999999999999999998875 444445568889999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 005139          582 KNAISKLRAIG  592 (712)
Q Consensus       582 ~~al~~~~~~~  592 (712)
                      ++++.+....+
T Consensus       317 ~~al~~~~~~g  327 (373)
T 1hz4_A          317 LDALKLANRTG  327 (373)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhcccc
Confidence            99999877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.4e-21  Score=191.68  Aligned_cols=253  Identities=14%  Similarity=0.145  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005139          263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (712)
Q Consensus       263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (712)
                      ..+..+..+|.+++..|++++|+.+|++++...      ..    ..++..+|.++...|++++|+.+|++++.+.... 
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-   71 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-   71 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-
Confidence            457789999999999999999999999999874      12    2358999999999999999999999999986552 


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                      ..+.+....++..+|.++...|++++|+.++++++.+.+.                +.++...|++++|+..+.+++.  
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~a~~~~~~~~~--  133 (258)
T 3uq3_A           72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------ADILTKLRNAEKELKKAEAEAY--  133 (258)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------hHHHHHHhHHHHHHHHHHHHHH--
Confidence            1122344789999999999999999999999999987532                3567778889999999999873  


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                          ..+....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.
T Consensus       134 ----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          134 ----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                57888899999999999999999999999999998        677788999999999999999999999999999


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV  566 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  566 (712)
                      +         .|....++..+|.++...|++++|+.+|++++++.+.. +..+....++..++.
T Consensus       202 ~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          202 K---------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV-NNGSSAREIDQLYYK  255 (258)
T ss_dssp             H---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHH
T ss_pred             h---------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh-cCCCchHHHHHHHHH
Confidence            8         33457789999999999999999999999999998654 232333344444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4e-21  Score=190.03  Aligned_cols=254  Identities=17%  Similarity=0.117  Sum_probs=217.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      +..+.++..+|.+++..|++++|+.+|++++... ..        ..++..+|.++...|++++|+.++.+++.......
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3467889999999999999999999999999886 22        24789999999999999999999999998776543


Q ss_pred             -CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          427 -QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       427 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                       ..+....++..+|.++...|++++|+.+|++++.+        .+.        +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence             33445789999999999999999999999999997        433        45677888999999999999886  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (712)
                             .+....++..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++
T Consensus       135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                   56678899999999999999999999999999986543       4688999999999999999999999999


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139          586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  651 (712)
                      .+.        +....++..+|.++...|++++|+.+|++++++......  .|....++..|+.+
T Consensus       201 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA  256 (258)
T ss_dssp             HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred             HhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence            862        223578999999999999999999999999999544432  37777777777654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.89  E-value=1.7e-21  Score=195.50  Aligned_cols=269  Identities=17%  Similarity=0.133  Sum_probs=222.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (712)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (712)
                      ....|++++|+.+|++++++..+..+.++|....++..+|.++...|++++|+.++++++.+.....+...+..+.++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34578999999999999999999988888999999999999999999999999999999999988766677888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139          398 MGLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (712)
Q Consensus       398 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (712)
                      +|.++...|++++|+.+|.+++......  .+.+....++..+|.+|...|++++|+.++++++.+.....+++.+....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9999999999999999999999877653  44688899999999999999999999999999999999988888999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005139          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (712)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (712)
                      ++..+|.+|...|++++|+.+|++++.+......+...+.....+..++..+...+....+. .+..+...........+
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  249 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSP  249 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCH
Confidence            99999999999999999999999999986543222223344456667777776655554443 35555555555544556


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      ....++..+|.+|...|++++|+.+|++++++
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77788999999999999999999999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=6.3e-22  Score=206.28  Aligned_cols=255  Identities=8%  Similarity=-0.000  Sum_probs=222.2

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-HEAALEHLVLASMTMIA  424 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  424 (712)
                      +|....++..+|.++...|++++|+..|++++.+.+..        ..+|+.+|.++..+|+ +++|+.+|++++.    
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----  160 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE----  160 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH----
Confidence            68888999999999999999999999999999987654        4589999999999997 9999999999985    


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                        ..|....+|+++|.++..+|++++|+..|++++.+        .|....+|.++|.++..+|++++|+.+|++++++ 
T Consensus       161 --l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-  229 (382)
T 2h6f_A          161 --EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-  229 (382)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred             --HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence              45667889999999999999999999999999999        8999999999999999999999999999999999 


Q ss_pred             hcCCCCCCChhHHHHHHHHHHHHHH-cccHHHH-----HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC--CHHH
Q 005139          505 EKPVPGVPPEEIASGLTDVSSIYES-MNELEQA-----IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSD  576 (712)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~  576 (712)
                              .|....+|+++|.++.. .|.+++|     +.+|++++.+.+..       ..+|..+|.++...|  ++++
T Consensus       230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------~~a~~~l~~ll~~~g~~~~~~  294 (382)
T 2h6f_A          230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDRGLSKYPN  294 (382)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTTTCGGGCHH
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHccCccchHH
Confidence                    55568899999999999 5555777     59999999987665       468899999999988  6889


Q ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHH-HHHHHHhcCCCChhhHHHHH
Q 005139          577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---------SINEAVELFEEA-RSILEQECGPYHPDTLGVYS  646 (712)
Q Consensus       577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~p~~~~~~~  646 (712)
                      |+..+.++ +    . .   +....++..+|.+|..+|         .+++|+.+|+++ +++        +|.....|.
T Consensus       295 a~~~~~~~-~----~-~---p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~  357 (382)
T 2h6f_A          295 LLNQLLDL-Q----P-S---HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWR  357 (382)
T ss_dssp             HHHHHHHH-T----T-T---CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred             HHHHHHHh-c----c-C---CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHH
Confidence            88877665 2    1 1   223478899999999985         258999999998 777        999999999


Q ss_pred             HHHHHHHHc
Q 005139          647 NLAGTYDAI  655 (712)
Q Consensus       647 ~La~~~~~~  655 (712)
                      .++..+..+
T Consensus       358 ~~~~~l~~~  366 (382)
T 2h6f_A          358 YIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.89  E-value=8.1e-21  Score=190.45  Aligned_cols=257  Identities=18%  Similarity=0.245  Sum_probs=221.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (712)
                      ....|++++|+.+|+++++++.+..+.+++..+.++..+|.+|...|++++|+.+|++++.+..... +.+++....++.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~   89 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN   89 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence            3457999999999999999999998888899999999999999999999999999999999987653 355678899999


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005139          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (712)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (712)
                      .+|.+|...|++++|+.+|++++.+.....+.. +....++..+|.+|...|++++|+.+|++++.+.........+...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            999999999999999999999999987664443 4667889999999999999999999999999999888777677788


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHccc-------------hhhhCCCCh
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSILEQE-CGPYHPDTLGVYSNLAGTYDAIGR-------------EEKLGTANP  666 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~p~~~~~~~~La~~~~~~g~-------------~~~l~~~~p  666 (712)
                      .++..+|.+|..+|++++|+.+|++++.+.... .+..++.....+..++..+...+.             .+.+...+|
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP  249 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence            999999999999999999999999999986554 344566666677777777665554             444556789


Q ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139          667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  700 (712)
Q Consensus       667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~  700 (712)
                      ....++..+|.+|..+|++++|. ..|+++++..
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~  282 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAH-TLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhh
Confidence            99999999999999999999999 9999998753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.88  E-value=3.4e-21  Score=192.50  Aligned_cols=248  Identities=15%  Similarity=0.078  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005139          266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET  345 (712)
Q Consensus       266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  345 (712)
                      ..++.+|.+++..|++++|+.+|+++++..     +..+.    ++..+|.+|...|++++|+.+|++++..     +.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~   69 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-----YNSPY----IYNRRAVCYYELAKYDLAQKDIETYFSK-----VNA   69 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----CCCST----THHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCc
Confidence            356778999999999999999999999876     44443    4889999999999999999999999873     122


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      ......++..+|.++...|++++|+.++++++.+.+...        .++..+|.++...|++++|+.+|++++      
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~al------  135 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL--------DMYGQIGSYFYNKGNFPLAIQYMEKQI------  135 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--------HHHHHHHHHHHHTTCHHHHHHHHGGGC------
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--------HHHHHHHHHHHHccCHHHHHHHHHHHh------
Confidence            233477899999999999999999999999999876543        379999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---LRESKSYCENALR  502 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~  502 (712)
                      ...|....++..+|...+..+++++|+.+|++++++        .|....++..+|.++...|+   +++|+.+|+++++
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  207 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE  207 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence            346667788999995555567999999999999998        77778899999999999999   9999999999999


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      +........ ......++..+|.+|...|++++|+.+|++++++.+..
T Consensus       208 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  254 (272)
T 3u4t_A          208 VCAPGGAKY-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN  254 (272)
T ss_dssp             HHGGGGGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence            986531010 23356889999999999999999999999999987654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=1.2e-19  Score=200.15  Aligned_cols=415  Identities=13%  Similarity=0.012  Sum_probs=295.6

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139          215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (712)
Q Consensus       215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~  294 (712)
                      ..+|.....+..++.. ...|+ +++|...|++++..+         |.....+..++..+...|++++|+.+|++++..
T Consensus         7 ~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~   75 (530)
T 2ooe_A            7 EENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK   75 (530)
T ss_dssp             HHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             hhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            4578889999999984 77776 999999999999764         455778888999999999999999999999987


Q ss_pred             hhhhhcccchHHHHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-------
Q 005139          295 PVIEEGQEHALAKFAGHMQLGD-TYAMLGQLENSLM----CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-------  362 (712)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~lg~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------  362 (712)
                      .     | +.    .+|..++. +....|+++.|..    .|++++..    .|. ++....+|...+.+...       
T Consensus        76 ~-----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~  140 (530)
T 2ooe_A           76 V-----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSY  140 (530)
T ss_dssp             C-----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSST
T ss_pred             C-----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccH
Confidence            5     3 22    23666664 4456788887776    55555543    232 34445666666666554       


Q ss_pred             --hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          363 --ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-------------CETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       363 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                        .|+++.|..+|++++.. +..    ..  ...+......             ....+++..|...+............
T Consensus       141 ~~~~~~~~a~~~y~~al~~-P~~----~~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~  213 (530)
T 2ooe_A          141 AENQRITAVRRVYQRGCVN-PMI----NI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR  213 (530)
T ss_dssp             THHHHHHHHHHHHHHHTTS-CCT----TH--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhHHHHHHHHHHHHHhc-hhh----hH--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence              78999999999999972 211    11  1122211111             11345677777766653322222211


Q ss_pred             -----Chh-------HHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-
Q 005139          428 -----DAE-------VASVDCSIGDTYLS----LSRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-  486 (712)
Q Consensus       428 -----~~~-------~~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  486 (712)
                           +|.       ....+.........    .++.    ..++..|++++..        .|....+|..+|.++.. 
T Consensus       214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~  285 (530)
T 2ooe_A          214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS  285 (530)
T ss_dssp             SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence                 211       12333332222211    1233    4788899999998        67778899999999986 


Q ss_pred             ------cCCHH-------HHHHHHHHHHH-HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005139          487 ------TGKLR-------ESKSYCENALR-IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (712)
Q Consensus       487 ------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (712)
                            .|+++       +|+..|++++. +         .|....++..+|.++...|++++|...|++++.+.+.   
T Consensus       286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---  353 (530)
T 2ooe_A          286 SKLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---  353 (530)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---
T ss_pred             chhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---
Confidence                  79987       88888888886 4         3345778999999999999999999999999986322   


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHH
Q 005139          553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILE  631 (712)
Q Consensus       553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~  631 (712)
                         ....+|..++.++.+.|++++|+.+|++|++..    + .   ....+...+.+ +...|++++|..+|+++++.  
T Consensus       354 ---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~-~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--  420 (530)
T 2ooe_A          354 ---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----R-T---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--  420 (530)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----T-C---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred             ---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----C-C---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence               122478899999999999999999999998741    1 1   12334444444 34689999999999999998  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHccc--------hhhh--CCCChh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139          632 QECGPYHPDTLGVYSNLAGTYDAIGR--------EEKL--GTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN  700 (712)
Q Consensus       632 ~~~~~~~p~~~~~~~~La~~~~~~g~--------~~~l--~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~  700 (712)
                            .|+...++..++.++...|+        .+.+  .+.+|+ ....|.....+....|+.+.+. ..+.++++..
T Consensus       421 ------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r~~~~~  493 (530)
T 2ooe_A          421 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAF  493 (530)
T ss_dssp             ------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHHHHHHT
T ss_pred             ------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHC
Confidence                  78888899999999999998        2222  233553 3457778888888999999999 9999999999


Q ss_pred             cc
Q 005139          701 SR  702 (712)
Q Consensus       701 p~  702 (712)
                      |+
T Consensus       494 p~  495 (530)
T 2ooe_A          494 RE  495 (530)
T ss_dssp             HH
T ss_pred             ch
Confidence            96

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.87  E-value=5.1e-21  Score=199.40  Aligned_cols=234  Identities=11%  Similarity=0.030  Sum_probs=209.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHh
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE  505 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  505 (712)
                      ..|....++..+|.++...|++++|+..|++++.+        +|....+|+.+|.++..+|+ +++|+.+|++++.+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            46778899999999999999999999999999999        89999999999999999997 99999999999999  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (712)
                             .|....+|+++|.++..+|++++|+.+|++++.+.+..       ..+|.++|.++..+|++++|+.+|++++
T Consensus       162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                   45568899999999999999999999999999987665       4789999999999999999999999999


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--
Q 005139          586 SKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEA-----VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--  657 (712)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--  657 (712)
                      ++        .+....+|+.+|.++.. .|.+++|     +.+|++++.+        +|+...++++++.++...|.  
T Consensus       228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence            97        23345899999999999 5655777     5999999999        99999999999999999883  


Q ss_pred             -------hhhhCCCChhHHHHHHHHHHHHHHhc--------c-HHHHHHHHHHHH-HHhccc
Q 005139          658 -------EEKLGTANPDVDDEKRRLAELLKEAG--------R-VRSRKAQSLETL-LDANSR  702 (712)
Q Consensus       658 -------~~~l~~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~l~~~-l~~~p~  702 (712)
                             ...+ ..+|+...++..||.+|..+|        + +++|+ +.|+++ ++.+|.
T Consensus       292 ~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~  351 (382)
T 2h6f_A          292 YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTI  351 (382)
T ss_dssp             CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGG
T ss_pred             hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCch
Confidence                   3444 778999999999999999985        3 58999 999999 898885

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.86  E-value=4.5e-21  Score=206.21  Aligned_cols=377  Identities=13%  Similarity=0.110  Sum_probs=258.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCH---hHHHHHHHHhhchhhhhhcc
Q 005139          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY---NEAIPVLEQSIEIPVIEEGQ  301 (712)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~  301 (712)
                      ..+|..++..|+ +++|+.+|+++.+.      +.     +.+++.||.+|...|++   ++|+.+|+++++.       
T Consensus         7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------   67 (452)
T 3e4b_A            7 QRLANEALKRGD-TVTAQQNYQQLAEL------GY-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------   67 (452)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHH------TC-----CTGGGTCC--------------------------------
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence            557888999997 99999999999764      22     34677899999999999   9999999999854       


Q ss_pred             cchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          302 EHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       302 ~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                       ++    .+++.||.++...+     ++++|+.+|+++++.       .+   ..+++.||.+|...+...++...++..
T Consensus        68 -~~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~  132 (452)
T 3e4b_A           68 -SP----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GE---GNTLIPLAMLYLQYPHSFPNVNAQQQI  132 (452)
T ss_dssp             --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TC---SSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred             -CH----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence             12    24888999777766     889999999999874       12   238889999999888766665555554


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHH
Q 005139          377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGF  453 (712)
Q Consensus       377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~  453 (712)
                      ....+...       ..+++.+|.+|...+.++++.............  ..+.   +++.+|.+|...|   ++++|+.
T Consensus       133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~  200 (452)
T 3e4b_A          133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK  200 (452)
T ss_dssp             HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence            44443332       237889999999999777666654433322222  2222   7899999999999   9999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH-H-
Q 005139          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-Y-  527 (712)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~-  527 (712)
                      +|+++.+.        .+..+..+++||.+|...    +++++|+.+|+++.   ..         .+.++++||.+ + 
T Consensus       201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence            99999987        555567778999999765    79999999999987   22         35678999998 4 


Q ss_pred             -HHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139          528 -ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-----NYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (712)
Q Consensus       528 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (712)
                       ...+++++|+.+|+++.+.     +    ...+++.||.+|. .|     ++++|+.+|+++. .       .   ...
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~  319 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA  319 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred             CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence             5689999999999999854     2    1468889999998 56     9999999999987 1       1   237


Q ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-c---c--------hhhhCCCC
Q 005139          602 ALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G---R--------EEKLGTAN  665 (712)
Q Consensus       602 ~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~-g---~--------~~~l~~~~  665 (712)
                      +++.||.+|..    ..++++|+.+|+++.+.          ....++++||.+|..- |   +        .......+
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence            89999998887    34999999999999763          2346788999998741 1   1        22222223


Q ss_pred             hhHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHhccc
Q 005139          666 PDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       666 p~~~~~~~~la~~~~~--~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      +   .+...++.+...  .++..+|. ...++....++.
T Consensus       390 ~---~a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~~  424 (452)
T 3e4b_A          390 P---EANDLATQLEAPLTPAQRAEGQ-RLVQQELAARGT  424 (452)
T ss_dssp             H---HHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhccc
Confidence            2   233444444432  45666777 777777776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.86  E-value=1.1e-20  Score=182.06  Aligned_cols=197  Identities=22%  Similarity=0.208  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +.+++.+|.++...|++++|+..|++++++.     |+++.    ++..+|.++...|++++|+..|++++++       
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~-------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQDPE----ALYWLARTQLKLGLVNPALENGKTLVAR-------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            5678889999999999999999999999886     55544    4999999999999999999999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQA-----------LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~  413 (712)
                       +|....++..+|.++...           |++++|+..|++++++.+..        ..++..+|.++...|++++|+.
T Consensus        69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--------~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--------APLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--------HHHHHHHHHHHHHcCChHHHHH
Confidence             788889999999999999           99999999999999987543        3478999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005139          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES  493 (712)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  493 (712)
                      .|++++.+.       ....++.++|.+|...|++++|+..|++++++        .|....++..+|.++...|++++|
T Consensus       140 ~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          140 SLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHH
Confidence            999998653       34677899999999999999999999999998        888889999999999999999999


Q ss_pred             HHHHHHHH
Q 005139          494 KSYCENAL  501 (712)
Q Consensus       494 ~~~~~~al  501 (712)
                      +..|+++-
T Consensus       205 ~~~~~~~~  212 (217)
T 2pl2_A          205 ARAAALEH  212 (217)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            99998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.85  E-value=1.8e-20  Score=180.42  Aligned_cols=197  Identities=17%  Similarity=0.162  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      .++..+|.++...|++++|+..|++++      ...|....++..+|.++...|++++|+..|++++++        .|.
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~   71 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERAL------KENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPR   71 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            478899999999999999999999998      567778899999999999999999999999999999        888


Q ss_pred             HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          473 VASVFVRLADMYNRT-----------GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       473 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                      ...++..+|.++...           |++++|+..|++++++         .|....++..+|.++...|++++|+..|+
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  142 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---------NPRYAPLHLQRGLVYALLGERDKAEASLK  142 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            899999999999999           9999999999999999         45567889999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE  621 (712)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  621 (712)
                      +++++. ..       ..++..+|.+|...|++++|+..|++++++        .+....++..+|.++...|++++|+.
T Consensus       143 ~al~~~-~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          143 QALALE-DT-------PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHC-CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---------
T ss_pred             HHHhcc-cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence            999985 32       468899999999999999999999999986        22335789999999999999999999


Q ss_pred             HHHHHHH
Q 005139          622 LFEEARS  628 (712)
Q Consensus       622 ~~~~al~  628 (712)
                      .|+++..
T Consensus       207 ~~~~~~~  213 (217)
T 2pl2_A          207 AAALEHH  213 (217)
T ss_dssp             -------
T ss_pred             HHHHHhh
Confidence            9998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=1.4e-19  Score=182.80  Aligned_cols=250  Identities=11%  Similarity=0.073  Sum_probs=199.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (712)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (712)
                      ++++|+.+|.++                      |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            488888887776                      4567788999999999999999988888777889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (712)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (712)
                      +|++++|+.+|++++.+....+  +....+.++.++|.+|... |++++|+.+|++++.+....   ........++.++
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~l  164 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKC  164 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHH
Confidence            9999999999999999987764  2345578999999999996 99999999999999998752   2233446789999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139          524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (712)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (712)
                      |.++..+|++++|+.+|++++.+.+...........++..+|.++..+|++++|+.+|++++.+........   ....+
T Consensus       165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~~~l  241 (292)
T 1qqe_A          165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFL  241 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH---HHHHH
Confidence            999999999999999999999987655222234556788999999999999999999999998754433221   12455


Q ss_pred             HHHHHHHH--HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139          604 NQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       604 ~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  652 (712)
                      ..++..+.  ..+++++|+..|++++.+        +|....++..+-...
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence            66676665  456799999998888776        888777776666554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=1.8e-18  Score=174.16  Aligned_cols=255  Identities=13%  Similarity=0.027  Sum_probs=204.1

Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (712)
                      .-.+..|+|..|+..+++.....        |.........++.+|...|+++.|+..++..           .+....+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~--------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a   67 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSS--------PERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQA   67 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCS--------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCC--------chhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHH
Confidence            44667899999999999876543        2223445778899999999999999866541           3456788


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA  432 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  432 (712)
                      +..++..+...+++++|++.+++++...   ..|..   ..++..+|.++...|++++|+.+|++           +...
T Consensus        68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~---~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~  130 (291)
T 3mkr_A           68 VRMFAEYLASHSRRDAIVAELDREMSRS---VDVTN---TTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSL  130 (291)
T ss_dssp             HHHHHHHHHCSTTHHHHHHHHHHHHHSC---CCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhcc---cCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCH
Confidence            9999999999999999999999887531   11222   34688999999999999999999975           3445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA--DMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      .++..+|.++..+|++++|+..|++++..        .|.........+  .++...|++++|+.+|++++...      
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~------  196 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC------  196 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC------
Confidence            68889999999999999999999999988        444332222222  33445589999999999999983      


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-SYDSFKNAISK  587 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~  587 (712)
                         |..+.+++.+|.++..+|++++|+..|++++.+.+..       ..++.++|.++...|++.+ +..++++++++
T Consensus       197 ---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          197 ---SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-------PETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence               3357789999999999999999999999999987655       4689999999999999976 56899999886

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=2.2e-18  Score=173.51  Aligned_cols=261  Identities=10%  Similarity=0.030  Sum_probs=204.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL-VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA  306 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  306 (712)
                      .+..+..|. |++|+..+++...         .+|+. ......++.+|..+|++++|+..++..          ..+  
T Consensus         6 ~~~~~~~g~-y~~ai~~~~~~~~---------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----------~~~--   63 (291)
T 3mkr_A            6 VKNAFYIGS-YQQCINEAQRVKP---------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----------SAP--   63 (291)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHSCC---------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----------SCH--
T ss_pred             HHHHHHHHH-HHHHHHHHHhccc---------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----------CCh--
Confidence            345677875 8888888776432         22443 456677899999999999999866541          111  


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      .+.++..++..+...+++++|+..+++++..      ..+|....++..+|.++...|++++|+.++++          +
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~  127 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------G  127 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------C
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------C
Confidence            3456888999999999999999999998764      11466778899999999999999999999987          1


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (712)
                      ..   ..++..+|.++..+|++++|+..|++++...   ++.. .......+..++...|++++|+.+|+++++.     
T Consensus       128 ~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----  195 (291)
T 3mkr_A          128 DS---LECMAMTVQILLKLDRLDLARKELKKMQDQD---EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----  195 (291)
T ss_dssp             CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----
T ss_pred             CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----
Confidence            12   3478899999999999999999999988641   2221 1111111223344569999999999999998     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH-HHHHHHHHHH
Q 005139          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ-AIKLLQKALK  545 (712)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~  545 (712)
                         .|....+++.+|.++..+|++++|+.+|++++.+         .|..+.++.++|.++...|++.+ +..+++++++
T Consensus       196 ---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          196 ---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence               6777889999999999999999999999999999         45567789999999999999976 5789999999


Q ss_pred             HHHhC
Q 005139          546 IYNDA  550 (712)
Q Consensus       546 ~~~~~  550 (712)
                      +.|+.
T Consensus       264 ~~P~~  268 (291)
T 3mkr_A          264 AHRSH  268 (291)
T ss_dssp             HCTTC
T ss_pred             hCCCC
Confidence            87665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.83  E-value=1.6e-18  Score=173.26  Aligned_cols=226  Identities=15%  Similarity=0.178  Sum_probs=196.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHhHHHHHHHHhh
Q 005139          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSI  292 (712)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~al  292 (712)
                      +|..+.+++.+|..++..|+ +++|+.+|+++++           +....+++.+|.+|..    .+++++|+.+|++++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACD-----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence            46778899999999999997 9999999999987           1124678899999999    999999999999998


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hC
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----AL  364 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g  364 (712)
                      +..       +    ..+++.+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..    .+
T Consensus        70 ~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           70 DLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             HTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred             HCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence            763       2    3358999999999    99999999999999876          245789999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005139          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (712)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (712)
                      ++++|+.+|+++++..          ...++..+|.+|..    .+++++|+.+|++++..        ....++..+|.
T Consensus       129 ~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~  190 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN  190 (273)
T ss_dssp             CHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence            9999999999999753          13478899999999    99999999999999853        12577899999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 005139          441 TYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI  503 (712)
Q Consensus       441 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  503 (712)
                      +|..    .+++++|+.+|+++++.        .+  ..++..+|.+|..    .+++++|+.+|++++++
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            9999    99999999999999986        33  5788999999999    99999999999999998

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.82  E-value=2.9e-18  Score=171.42  Aligned_cols=225  Identities=18%  Similarity=0.223  Sum_probs=196.3

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTM  422 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  422 (712)
                      |..+.+++.+|.++...|++++|+.+|+++++.    .   .   ..++..+|.++..    .+++++|+.+|++++.. 
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K---E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C---C---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence            455678999999999999999999999999871    1   1   3478999999999    99999999999999853 


Q ss_pred             HhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESK  494 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  494 (712)
                             ....+++.+|.+|..    .+++++|+.+|+++++.        .  ...++..+|.+|..    .+++++|+
T Consensus        72 -------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           72 -------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------K--YAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             -------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------C--CccHHHHHHHHHHcCCCcccCHHHHH
Confidence                   146788999999999    99999999999999885        2  35789999999999    99999999


Q ss_pred             HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005139          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (712)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (712)
                      .+|+++++..           ...++..+|.+|..    .+++++|+.+|+++++..     .    ..++..+|.+|..
T Consensus       135 ~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~----~~a~~~lg~~~~~  194 (273)
T 1ouv_A          135 EYFTKACDLN-----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----D----SPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----C----HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----C----HHHHHHHHHHHHc
Confidence            9999999861           25678899999999    999999999999998751     1    3578899999999


Q ss_pred             ----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139          571 ----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI  629 (712)
Q Consensus       571 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  629 (712)
                          .+++++|+.+|+++++.       .+   ..++..+|.+|..    .+++++|+.+|++++++
T Consensus       195 g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          195 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence                99999999999999874       12   3789999999999    99999999999999998

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.82  E-value=1.9e-20  Score=201.26  Aligned_cols=346  Identities=13%  Similarity=0.062  Sum_probs=241.7

Q ss_pred             CcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          195 TPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNP---QKALELALRAAKSFEIGANGKPSLELVMCLHVI  271 (712)
Q Consensus       195 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~---~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l  271 (712)
                      ......|++.+|+..+..+...  ....+++.+|.+++..|+ +   ++|+.+|++|++.            .+.+++.|
T Consensus        11 ~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~-~~d~~~A~~~~~~A~~~------------~~~A~~~L   75 (452)
T 3e4b_A           11 NEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRD-PAQIKQAEATYRAAADT------------SPRAQARL   75 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-----------------------------------------CHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhC------------CHHHHHHH
Confidence            3445667777777555544322  345567788888888875 7   8999999999854            25578889


Q ss_pred             HHHHHHcC-----CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139          272 AAIYCSLG-----QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (712)
Q Consensus       272 a~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (712)
                      |.++...+     ++++|+.+|++++...       ++.    +++.||.+|...+...++...++.......       
T Consensus        76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-------  137 (452)
T 3e4b_A           76 GRLLAAKPGATEAEHHEAESLLKKAFANG-------EGN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQA-------  137 (452)
T ss_dssp             HHHHHTC--CCHHHHHHHHHHHHHHHHTT-------CSS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-------
T ss_pred             HHHHHhCCCCCCcCHHHHHHHHHHHHHCC-------CHH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------
Confidence            99777766     8899999999998742       222    488999999998876665544444433322       


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMI  423 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~  423 (712)
                      +....+++.||.+|...+.++++................       .+++.||.+|...|   ++++|+.+|+++..   
T Consensus       138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~-------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---  207 (452)
T 3e4b_A          138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD-------ICYVELATVYQKKQQPEQQAELLKQMEAGVS---  207 (452)
T ss_dssp             HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT-------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---
Confidence            123568889999999999777777665554444333221       17899999999999   99999999999973   


Q ss_pred             hCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H--HHcCCHHHHHHH
Q 005139          424 ANDQDAEVASVDCSIGDTYLSL----SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM-Y--NRTGKLRESKSY  496 (712)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~  496 (712)
                         ..+..+..++++|.+|...    +++++|+.+|+++.           +....++++||.+ +  ...+++++|+.+
T Consensus       208 ---~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~  273 (452)
T 3e4b_A          208 ---RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKY  273 (452)
T ss_dssp             ---TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence               3444556678899999765    79999999999986           2235688999998 4  468999999999


Q ss_pred             HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH-
Q 005139          497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-----ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM-  570 (712)
Q Consensus       497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-  570 (712)
                      |+++.+.      +     ...++++||.+|. .|     ++++|+.+|+++.   +..       ..+++.||.+|.. 
T Consensus       274 ~~~Aa~~------g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-------~~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          274 LDNGRAA------D-----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-------VAADYYLGQIYRRG  331 (452)
T ss_dssp             HHHHHHT------T-----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-------HHHHHHHHHHHHTT
T ss_pred             HHHHHHC------C-----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-------HHHHHHHHHHHHCC
Confidence            9999865      1     3678999999998 66     9999999999998   222       3688899999887 


Q ss_pred             ---cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139          571 ---LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI  629 (712)
Q Consensus       571 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  629 (712)
                         ..++++|+.+|+++.+.    +   .   ..+++.||.+|..    ..++.+|..+|++|.+.
T Consensus       332 ~g~~~d~~~A~~~~~~Aa~~----g---~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          332 YLGKVYPQKALDHLLTAARN----G---Q---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             TTSSCCHHHHHHHHHHHHTT----T---C---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHhh----C---h---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence               34999999999999762    1   1   2678899999985    45899999999999874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=3.6e-19  Score=174.33  Aligned_cols=219  Identities=17%  Similarity=0.162  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      .+..+..+|.++...|++++|+.+|++++.      ..+....++..+|.++...|++++|+.++++++..        .
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~   87 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE------ENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------D   87 (243)
T ss_dssp             --------------------CCTTHHHHHT------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence            355788999999999999999999999983      45566788999999999999999999999999998        6


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      |....++..+|.++...|++++|+.+|++++.+...         ...++..+|.++...|++++|+.++++++...+..
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            777889999999999999999999999999998432         35679999999999999999999999999885543


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL  630 (712)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  630 (712)
                             ..++..+|.++...|++++|+.+|++++...        +....++..+|.++...|++++|+.+|++++++ 
T Consensus       159 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-  222 (243)
T 2q7f_A          159 -------TEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI-  222 (243)
T ss_dssp             -------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence                   3578899999999999999999999998862        122468999999999999999999999999998 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          631 EQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       631 ~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                             +|+...++..++.+....
T Consensus       223 -------~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          223 -------QPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             -------CTTCHHHHHHHTC-----
T ss_pred             -------CcchHHHHHHHHHHHhhc
Confidence                   888888888887765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=5.1e-17  Score=185.00  Aligned_cols=349  Identities=14%  Similarity=0.063  Sum_probs=213.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH---------------H---------HHHHHHHHcCC
Q 005139          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL---------------H---------VIAAIYCSLGQ  280 (712)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l---------------~---------~la~~~~~~g~  280 (712)
                      -..++.|...|. +.+|++++++++-- ....  ..+...-..+               .         .+|.++...|.
T Consensus       989 s~~vKaf~~agl-p~EaieLLEKivl~-~s~f--s~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A          989 SVTVKAFMTADL-PNELIELLEKIVLD-NSVF--SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL 1064 (1630)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHcC-CCcc--cccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCC
Confidence            345677788886 99999999999822 1100  0111111111               0         12555666666


Q ss_pred             HhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (712)
Q Consensus       281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (712)
                      |++|..+|+++...                ...+...+...+++++|+++++++             ....+|..+|.++
T Consensus      1065 yEEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A         1065 FEEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred             HHHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHH
Confidence            66666666654211                011122233445555555554432             2245666777777


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005139          361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD  440 (712)
Q Consensus       361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  440 (712)
                      ...|++++|+..|.++       .+      ...|..+|.++...|+|++|+++|..|......       ..+...+|.
T Consensus      1116 l~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-------~~Idt~Laf 1175 (1630)
T 1xi4_A         1116 LQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-------SYVETELIF 1175 (1630)
T ss_pred             HhCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------ccccHHHHH
Confidence            7777777777777654       10      124566677777777777777777666542211       011123666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005139          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL  520 (712)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  520 (712)
                      +|.+++++++ ++.|.   .         .+.. ..+..+|..+...|+|++|..+|.++                 ..|
T Consensus      1176 aYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~ny 1224 (1630)
T 1xi4_A         1176 ALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNF 1224 (1630)
T ss_pred             HHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hHH
Confidence            6666666663 33221   1         1222 24446777777777777777777664                 135


Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005139          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG  600 (712)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  600 (712)
                      ..+|.+|..+|++++|++.+++|...            .+|...+.++...|+|..|..+... +..           .+
T Consensus      1225 ~rLA~tLvkLge~q~AIEaarKA~n~------------~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~~ 1280 (1630)
T 1xi4_A         1225 GRLASTLVHLGEYQAAVDGARKANST------------RTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------HA 1280 (1630)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHhCCH------------HHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------CH
Confidence            66777777777777777777776221            4566667777777777777666553 211           12


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc---------hhhhCCCCh-----
Q 005139          601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---------EEKLGTANP-----  666 (712)
Q Consensus       601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---------~~~l~~~~p-----  666 (712)
                      ..+..++..|...|.+++|+.+++.++.+        ++.....+..|+.+|.+-.-         +..-....+     
T Consensus      1281 deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~ 1352 (1630)
T 1xi4_A         1281 DELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 1352 (1630)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH
Confidence            45668889999999999999999999998        77777888888888877654         222233344     


Q ss_pred             hHHHHHHHHHHHHHHhccHHHHH
Q 005139          667 DVDDEKRRLAELLKEAGRVRSRK  689 (712)
Q Consensus       667 ~~~~~~~~la~~~~~~g~~~~A~  689 (712)
                      +.+..|..+..+|.+.|+++.|.
T Consensus      1353 e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1353 EQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHH
Confidence            55677999999999999999998

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=2.2e-17  Score=181.86  Aligned_cols=380  Identities=9%  Similarity=-0.038  Sum_probs=262.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      |....++..++.. ...|++++|...|+++++..     |..+    .+|..++..+...|++++|...|++++..    
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~----   75 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK----   75 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence            4446677777774 77999999999999999886     4443    35899999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---------cCC
Q 005139          342 LGETDPRVGETCRYLAE-AHVQALQFSEAQK----FCQMALDIHKDNGSPASLEEAADRRLMGLICET---------KGD  407 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~---------~g~  407 (712)
                          .|. ...|..++. +....|++++|.+    .|++++.......  ..   ..+|...+.....         .|+
T Consensus        76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence                454 346766664 4445688877766    6666665432211  11   2355555655544         789


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCC---CCH
Q 005139          408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGE---NHP  471 (712)
Q Consensus       408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~~  471 (712)
                      ++.|..+|++++..    +.. .....+...+...             ...+++..|...+.+...+.......   -.|
T Consensus       146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            99999999999841    111 1122222222111             12456777777666543332222100   011


Q ss_pred             -------HHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-------
Q 005139          472 -------AVASVFVRLADMYNRT----GKL----RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-------  529 (712)
Q Consensus       472 -------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------  529 (712)
                             .....|..........    ++.    ..++..|++++...         |....+|..+|.++..       
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~  291 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAE  291 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhh
Confidence                   1234444443332221    232    47889999999984         3347789999999886       


Q ss_pred             cccHH-------HHHHHHHHHHH-HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139          530 MNELE-------QAIKLLQKALK-IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (712)
Q Consensus       530 ~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (712)
                      .|+++       +|+..|++|+. +.+.       ...++..+|.++...|++++|...|++++.+     .  +.....
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~-------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~--p~~~~~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKK-------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----E--DIDPTL  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----S--SSCHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----c--ccCchH
Confidence            79987       88899998886 4332       2468889999999999999999999999984     1  111235


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH-HHHccc-------hhhhCCCChhHHHHHH
Q 005139          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGR-------EEKLGTANPDVDDEKR  673 (712)
Q Consensus       602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~-~~~~g~-------~~~l~~~~p~~~~~~~  673 (712)
                      +|..+|.++...|++++|+.+|++|++.        .|.....+...+.+ +...|+       ++......|+.+.++.
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~  429 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL  429 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence            8999999999999999999999999885        44444555555544 345666       3333355688889999


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          674 RLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       674 ~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .++.++...|++++|. ..|++++...|.
T Consensus       430 ~~~~~~~~~g~~~~Ar-~~~~~al~~~~~  457 (530)
T 2ooe_A          430 AYIDYLSHLNEDNNTR-VLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred             HHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence            9999999999999999 999999998664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=5.5e-18  Score=171.11  Aligned_cols=234  Identities=13%  Similarity=0.057  Sum_probs=185.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139          323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC  402 (712)
Q Consensus       323 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~  402 (712)
                      ++++|+.+|.++                      |.+|...|++++|+.+|.+++.+.+..+.  ....+.++.++|.+|
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~   87 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCF   87 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence            488888888776                      44577889999999999999999987753  345678999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005139          403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL-SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA  481 (712)
Q Consensus       403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  481 (712)
                      ..+|++++|+.+|++++.+....++....+.++.++|.+|... |++++|+.+|++++++.....  +......++..+|
T Consensus        88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg  165 (292)
T 1qqe_A           88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCA  165 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHH
Confidence            9999999999999999999988887777889999999999996 999999999999999977543  1233467899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 005139          482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE  561 (712)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  561 (712)
                      .++..+|++++|+.+|++++.+....  .........++..+|.++..+|++++|+.+|++++.+.+.....  .....+
T Consensus       166 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~l  241 (292)
T 1qqe_A          166 DLKALDGQYIEASDIYSKLIKSSMGN--RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RESNFL  241 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSC--TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HHHHHH
Confidence            99999999999999999999985442  11112345678999999999999999999999999987765321  122345


Q ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHHH
Q 005139          562 AQMGVMYY--MLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       562 ~~la~~~~--~~g~~~~A~~~~~~al~  586 (712)
                      ..++..+.  ..+++++|+..|++++.
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            56666664  45678888888877654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=5.7e-19  Score=176.44  Aligned_cols=252  Identities=16%  Similarity=0.032  Sum_probs=198.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHH
Q 005139          234 SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQ  313 (712)
Q Consensus       234 ~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  313 (712)
                      .|+ +++|+..|+++++..     ....+..+.++..+|.++...|++++|+.+|++++.+.     +..+    .++..
T Consensus        18 ~~~-~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~----~~~~~   82 (275)
T 1xnf_A           18 TLQ-QEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMP----EVFNY   82 (275)
T ss_dssp             CHH-HHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCH----HHHHH
T ss_pred             cch-HHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CCcH----HHHHH
Confidence            355 899999999998642     22346788999999999999999999999999999885     4443    35899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 005139          314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA  393 (712)
Q Consensus       314 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~  393 (712)
                      +|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.++++++.+.+...        .
T Consensus        83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~  146 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--------F  146 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------H
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--------H
Confidence            999999999999999999999998        566678999999999999999999999999998765432        1


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      ... ...++...|++++|+.++.+++...   ....    ....++.++...+++++|+..+++++......    .+..
T Consensus       147 ~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~  214 (275)
T 1xnf_A          147 RSL-WLYLAEQKLDEKQAKEVLKQHFEKS---DKEQ----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHL  214 (275)
T ss_dssp             HHH-HHHHHHHHHCHHHHHHHHHHHHHHS---CCCS----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHH
T ss_pred             HHH-HHHHHHHhcCHHHHHHHHHHHHhcC---Ccch----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccc
Confidence            222 2334467799999999999887542   2221    12347778888999999999999988764332    3455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL  540 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (712)
                      ..++..+|.+|...|++++|+.+|++++.+...         .   +...+.++...|++++|+..+
T Consensus       215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~---~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH---------N---FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT---------T---CHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch---------h---HHHHHHHHHHHHHHHhhHHHH
Confidence            789999999999999999999999999987321         1   223477888899999998887

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.80  E-value=5e-19  Score=176.88  Aligned_cols=259  Identities=13%  Similarity=0.038  Sum_probs=201.1

Q ss_pred             HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139          271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG  350 (712)
Q Consensus       271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  350 (712)
                      ++..+...|++++|+..|+++++..     +..+.....++..+|.++...|++++|+.+|++++.+        +|...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~   77 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP   77 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred             eeeccCccchHHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence            3444555689999999999999873     2222335667999999999999999999999999998        67778


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      .++..+|.++...|++++|+.+|++++.+.+..        ..++..+|.++...|++++|+.+|++++...   +..+ 
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~-  145 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP-  145 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence            899999999999999999999999999986543        2478999999999999999999999998642   2222 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                        .....++ ++...|++++|+.++++++..        .+..... ..++.++...++.++|+..+.+++......   
T Consensus       146 --~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---  210 (275)
T 1xnf_A          146 --FRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSL---  210 (275)
T ss_dssp             --HHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH---
T ss_pred             --HHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccc---
Confidence              2222333 346679999999999999886        2222222 347788888999999999999987764331   


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (712)
                        .+....++..+|.+|...|++++|+.+|++++.+.+..          +...+.++...|++++|+..|
T Consensus       211 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          211 --AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----------FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHHC----
T ss_pred             --cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHhhHHHH
Confidence              23447889999999999999999999999999875322          123467788889999998877

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=5e-18  Score=158.63  Aligned_cols=171  Identities=22%  Similarity=0.277  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      +.+|+++|.+|..+|++++|+.+|++++++        +|....++..+|.+|...|++++|+..+.+++...       
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence            568999999999999999999999999999        88889999999999999999999999999999883       


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (712)
                        +....++..+|.++...++++.|...+.+++.+.+..       ..++..+|.+|..+|++++|+.+|++++++    
T Consensus        70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----  136 (184)
T 3vtx_A           70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI----  136 (184)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHh----
Confidence              3346788999999999999999999999999886554       467889999999999999999999999986    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139          592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (712)
Q Consensus       592 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~  642 (712)
                          .+....++..+|.+|..+|++++|+.+|++|+++        +|+.+
T Consensus       137 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~a  175 (184)
T 3vtx_A          137 ----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--------EEKKA  175 (184)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------THHHH
T ss_pred             ----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------CccCH
Confidence                2234578999999999999999999999999998        77754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.80  E-value=7.3e-19  Score=172.11  Aligned_cols=220  Identities=17%  Similarity=0.161  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (712)
                      .+..++.+|.++...|++++|+.+|++++...     +..+    .++..+|.++...|++++|+.+|++++..      
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KEDA----IPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            46678889999999999999999999999865     3333    35899999999999999999999999988      


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                        .|....++..+|.++...|++++|+.++++++...+..        ..++..+|.++...|++++|+.++++++..  
T Consensus        87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  154 (243)
T 2q7f_A           87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN--------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--  154 (243)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS--------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence              56778899999999999999999999999999876432        347889999999999999999999999854  


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                          .+....++..+|.++...|++++|+.++++++..        .|....++..+|.+|...|++++|+.+|++++++
T Consensus       155 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          155 ----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             ----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence                3344568899999999999999999999999998        6666789999999999999999999999999998


Q ss_pred             HhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139          504 YEKPVPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                      .         |....++..++.+....+
T Consensus       223 ~---------p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          223 Q---------PDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             C---------TTCHHHHHHHTC------
T ss_pred             C---------cchHHHHHHHHHHHhhcc
Confidence            3         334555666665554433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.80  E-value=7.9e-18  Score=171.32  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=198.9

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005139          362 QALQFSEAQKFCQMALDIHKDNG---SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI  438 (712)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  438 (712)
                      ..|++++|..+++++.+..+...   ..+.......+...|.+|...|++++|+.+|.+++.+....++....+.++.++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35678888888888887765321   123334445666778899999999999999999999998888888889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      |.+|..+|++++|+.+|++++.+.....  +....+.++.++|.+|.. |++++|+.+|++++.+....   ........
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~~~~~~  156 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERLRQAAE  156 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CChhHHHH
Confidence            9999999999999999999999987654  234567899999999999 99999999999999998763   23445678


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (712)
                      ++.++|.+|..+|++++|+.+|++++.+.+.. +.......++..+|.++..+|++++|+.+|++++ +......   ..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---~~  231 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---SE  231 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT---SH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC---CH
Confidence            99999999999999999999999999999876 3344555688899999999999999999999998 5322221   22


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHH
Q 005139          599 FGVALNQMGLACVQRYSINEAVE  621 (712)
Q Consensus       599 ~~~~~~~lg~~~~~~g~~~~A~~  621 (712)
                      ....+..++..+ ..|+.+.+..
T Consensus       232 e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          232 DCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHH
Confidence            334566666666 5677665555

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.79  E-value=2e-17  Score=168.29  Aligned_cols=215  Identities=16%  Similarity=0.173  Sum_probs=180.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005139          405 KGDHEAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR  479 (712)
Q Consensus       405 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  479 (712)
                      .|++++|.++++++......     .++.......+...|.+|...|++++|+.+|.+++++.....  +....+.++.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~   81 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ   81 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence            46777888888887765542     223334455666778899999999999999999999988764  34567889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 005139          480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG  559 (712)
Q Consensus       480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  559 (712)
                      +|.+|..+|++++|+.+|++++.++...   .+....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~  156 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE  156 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence            9999999999999999999999998763   2344567899999999999 99999999999999999875 55455678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ++.++|.+|..+|++++|+.+|++++.+......  ......++..+|.++..+|++++|+.+|++++ +
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~  223 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S  223 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence            8999999999999999999999999999887654  23455688999999999999999999999999 6

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.79  E-value=1.1e-17  Score=164.72  Aligned_cols=207  Identities=19%  Similarity=0.156  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ...++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...+..   
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---  104 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---  104 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---
Confidence            4567999999999999999999999999988        56678899999999999999999999999999885432   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139          387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  466 (712)
                           ..++..+|.++...|++++|+.+|++++.    .+..+....++..+|.++...|++++|+.++++++..     
T Consensus       105 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  170 (252)
T 2ho1_A          105 -----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----  170 (252)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence                 34788999999999999999999999874    2356778889999999999999999999999999998     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                         .|....++..+|.++...|++++|+.++++++...         +....++..++.++...|++++|..++++++..
T Consensus       171 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          171 ---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG---------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence               66667889999999999999999999999998762         234567889999999999999999999999988


Q ss_pred             HHhC
Q 005139          547 YNDA  550 (712)
Q Consensus       547 ~~~~  550 (712)
                      .+..
T Consensus       239 ~p~~  242 (252)
T 2ho1_A          239 YPGS  242 (252)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            6543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.78  E-value=1.3e-17  Score=164.45  Aligned_cols=211  Identities=15%  Similarity=0.084  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +.++..+|.++...|++++|+.+|++++..      .+....++..+|.++...|++++|+.+|++++..        .|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~  102 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------DS  102 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------Cc
Confidence            678999999999999999999999999854      3445678999999999999999999999999998        66


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      ....++..+|.++...|++++|+.+|++++. . .     ..+....++..+|.++...|++++|+.++++++...+.. 
T Consensus       103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  174 (252)
T 2ho1_A          103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D-T-----LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-  174 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C-T-----TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C-c-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-
Confidence            6788999999999999999999999999987 1 0     145567889999999999999999999999999875432 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE  631 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  631 (712)
                            ..++..+|.++...|++++|+.+|++++...        +....++..++.++...|++++|..++++++.+  
T Consensus       175 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--  238 (252)
T 2ho1_A          175 ------PSVALEMADLLYKEREYVPARQYYDLFAQGG--------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--  238 (252)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--
Confidence                  4678899999999999999999999998741        122467889999999999999999999999998  


Q ss_pred             HhcCCCChhhHHHHH
Q 005139          632 QECGPYHPDTLGVYS  646 (712)
Q Consensus       632 ~~~~~~~p~~~~~~~  646 (712)
                            .|+...+..
T Consensus       239 ------~p~~~~~~~  247 (252)
T 2ho1_A          239 ------YPGSLEYQE  247 (252)
T ss_dssp             ------CTTSHHHHH
T ss_pred             ------CCCCHHHHH
Confidence                  666555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.78  E-value=5.9e-18  Score=183.05  Aligned_cols=220  Identities=11%  Similarity=0.041  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005139          328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF-SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG  406 (712)
Q Consensus       328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g  406 (712)
                      ...+++++........ ..+..+.+++.+|.++...|++ ++|+.+|++++++.+..        ..++..+|.+|...|
T Consensus        81 ~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------~~a~~~lg~~~~~~g  151 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------VEAWNQLGEVYWKKG  151 (474)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcC
Confidence            3334444444433322 2567788999999999999999 99999999999986543        458999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139          407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (712)
Q Consensus       407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (712)
                      ++++|+.+|++++.      ..|. ..++..+|.++...         |++++|+.+|++++++        .|....++
T Consensus       152 ~~~~A~~~~~~al~------~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  216 (474)
T 4abn_A          152 DVTSAHTCFSGALT------HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSW  216 (474)
T ss_dssp             CHHHHHHHHHHHHT------TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             CHHHHHHHHHHHHh------hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            99999999999984      3444 58999999999999         9999999999999998        78888999


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          478 VRLADMYNRT--------GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       478 ~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ..+|.+|...        |++++|+.+|++++.+...      .+....++.++|.+|...|++++|+.+|++++.+.+.
T Consensus       217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999        9999999999999999321      1156889999999999999999999999999998665


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (712)
                      .       ..++..++.++...|++++|+..+.+.
T Consensus       291 ~-------~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          291 W-------PEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             C-------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             C-------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4       467889999999999999998876554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.78  E-value=2.9e-18  Score=185.47  Aligned_cols=235  Identities=14%  Similarity=0.102  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCH-hHHHHHHHHhhc
Q 005139          222 PLLLKQARELISSGDNPQ-------KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY-NEAIPVLEQSIE  293 (712)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~-------~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~-~~A~~~~~~al~  293 (712)
                      ..+..+...|+.... ..       .....+++++..++.....  .+..+.+++.+|.++...|++ ++|+.+|+++++
T Consensus        55 ~~l~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~  131 (474)
T 4abn_A           55 DRLYCFRDSYFETHS-VEDAGRKQQDVQEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK  131 (474)
T ss_dssp             HHHHHHHHTHHHHSC-GGGGGGHHHHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            344555555555543 22       4555677777777665332  234578899999999999999 999999999999


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh---------C
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA---------L  364 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g  364 (712)
                      +.     +..+    .++..+|.+|...|++++|+.+|++++++        +|. ..++..+|.++...         |
T Consensus       132 ~~-----p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g  193 (474)
T 4abn_A          132 LE-----PELV----EAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSR  193 (474)
T ss_dssp             HC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred             hC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence            86     4443    35999999999999999999999999988        466 58999999999999         9


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhCCCCh---hHHH
Q 005139          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK--------GDHEAALEHLVLASMTMIANDQDA---EVAS  433 (712)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~---~~~~  433 (712)
                      ++++|+.+|++++++.+..        ..++..+|.+|...        |++++|+.+|++++.+      .|   ....
T Consensus       194 ~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~  259 (474)
T 4abn_A          194 HVMDSVRQAKLAVQMDVLD--------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPD  259 (474)
T ss_dssp             HHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHH
T ss_pred             hHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHH
Confidence            9999999999999986543        34799999999999        9999999999999864      44   6788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN  499 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (712)
                      +++++|.+|..+|++++|+.+|++++++        .|....++..++.++...|++++|+..+.+
T Consensus       260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          260 LHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999        788889999999999999999999876644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.77  E-value=1.3e-17  Score=155.80  Aligned_cols=171  Identities=17%  Similarity=0.194  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD  428 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  428 (712)
                      ...+|+.+|.+|...|++++|+.+|++++++.|..        ..++..+|.+|...|++++|+..+.+++.      ..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~a~~~~~~~~~------~~   69 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN--------VETLLKLGKTYMDIGLPNDAIESLKKFVV------LD   69 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cC
Confidence            45789999999999999999999999999987544        45799999999999999999999999874      34


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      +....++..+|.++...++++.|...+.+++.+        .|....++..+|.+|..+|++++|+.+|++++++     
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----  136 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----  136 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence            455678889999999999999999999999998        7888889999999999999999999999999999     


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                          .|....++..+|.+|..+|++++|+.+|++++++.++.
T Consensus       137 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          137 ----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             ----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence                44567889999999999999999999999999987653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.77  E-value=6.4e-16  Score=176.07  Aligned_cols=334  Identities=15%  Similarity=0.114  Sum_probs=245.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005139          228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK  307 (712)
Q Consensus       228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  307 (712)
                      |..+...|. +++|..+|+++-.           ...     .+...+...+++++|+++++++..          +   
T Consensus      1056 A~Iai~lgl-yEEAf~IYkKa~~-----------~~~-----A~~VLie~i~nldrAiE~Aervn~----------p--- 1105 (1630)
T 1xi4_A         1056 ANIAISNEL-FEEAFAIFRKFDV-----------NTS-----AVQVLIEHIGNLDRAYEFAERCNE----------P--- 1105 (1630)
T ss_pred             HHHHHhCCC-HHHHHHHHHHcCC-----------HHH-----HHHHHHHHHhhHHHHHHHHHhcCC----------H---
Confidence            666777775 7777777777531           111     123334478899999999987522          2   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139          308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA  387 (712)
Q Consensus       308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  387 (712)
                       .+|+.+|.++...|++++|+..|.++             .....|..+|.++...|+|++|+++|..+.+..+...   
T Consensus      1106 -~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--- 1168 (1630)
T 1xi4_A         1106 -AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--- 1168 (1630)
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---
Confidence             25999999999999999999999775             3346788899999999999999999999988663322   


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                            +...+|.+|.+++++++ ++.|..          .+.. ..+..+|..+...|+|++|..+|.++         
T Consensus      1169 ------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A         1169 ------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred             ------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence                  23358999999999885 444421          2222 34557999999999999999999885         


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                             ..|..+|.+|.++|++++|++.+.+|..              ..+|...+.++...|+|..|..+... +...
T Consensus      1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~ 1279 (1630)
T 1xi4_A         1222 -------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 1279 (1630)
T ss_pred             -------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC
Confidence                   3678899999999999999999998822              36788999999999999999987764 3222


Q ss_pred             HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHH
Q 005139          548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEE  625 (712)
Q Consensus       548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~  625 (712)
                      +          ..+..++..|...|.|++|+.+++.++.+-        +.....+..||.+|.+  .++..+++++|..
T Consensus      1280 ~----------deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A         1280 A----------DELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred             H----------HHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2          345578889999999999999999998751        2233566667777664  4567778888887


Q ss_pred             HHHHHHHhcCCCCh-----hhHHHHHHHHHHHHHccchhhhC-------------------CCChhHHHHHHHHHHHHHH
Q 005139          626 ARSILEQECGPYHP-----DTLGVYSNLAGTYDAIGREEKLG-------------------TANPDVDDEKRRLAELLKE  681 (712)
Q Consensus       626 al~~~~~~~~~~~p-----~~~~~~~~La~~~~~~g~~~~l~-------------------~~~p~~~~~~~~la~~~~~  681 (712)
                      .+.+        .+     +.+..|..+..+|..-|+.....                   -..+.+++.++.....|..
T Consensus      1342 rini--------~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A         1342 RVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred             hccc--------chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence            7765        33     55667788888888877711110                   1244556777777777775


Q ss_pred             hc
Q 005139          682 AG  683 (712)
Q Consensus       682 ~g  683 (712)
                      .+
T Consensus      1414 ~~ 1415 (1630)
T 1xi4_A         1414 FK 1415 (1630)
T ss_pred             hC
Confidence            55

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.77  E-value=7.4e-17  Score=155.52  Aligned_cols=207  Identities=16%  Similarity=0.075  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ...++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...+..   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---   75 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---
Confidence            3456899999999999999999999999988        56667899999999999999999999999999875432   


Q ss_pred             CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          387 ASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                           ..++..+|.++... |++++|+.++++++.    .+..+....++..+|.++...|++++|+.++++++..    
T Consensus        76 -----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  142 (225)
T 2vq2_A           76 -----AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----  142 (225)
T ss_dssp             -----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             -----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence                 34788999999999 999999999999884    3356677889999999999999999999999999998    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139          466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK  545 (712)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (712)
                          .|....++..+|.++...|++++|+.++++++.....        .....+..++.++...|++++|..+++.+..
T Consensus       143 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          143 ----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--------LQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             ----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                6666789999999999999999999999999998530        2345578889999999999999999999887


Q ss_pred             HHHh
Q 005139          546 IYND  549 (712)
Q Consensus       546 ~~~~  549 (712)
                      ..+.
T Consensus       211 ~~p~  214 (225)
T 2vq2_A          211 NFPY  214 (225)
T ss_dssp             HCTT
T ss_pred             hCCC
Confidence            6544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.77  E-value=6.7e-17  Score=155.78  Aligned_cols=215  Identities=14%  Similarity=0.036  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                      ....++..+|.++...|++++|+.+|++++..      .+....++..+|.++...|++++|+.++++++..        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------   71 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--------   71 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------
Confidence            44668899999999999999999999999853      3344678899999999999999999999999998        


Q ss_pred             CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      .|....++..+|.++... |++++|+.++++++. ...      .+....++..+|.++...|++++|+.++++++...+
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  144 (225)
T 2vq2_A           72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP  144 (225)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            666778999999999999 999999999999988 111      344577899999999999999999999999998755


Q ss_pred             hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                      ..       ..++..+|.++...|++++|+.++++++...    +..   ...++..++.++...|++++|..+++.+..
T Consensus       145 ~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          145 QF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRV----EVL---QADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            43       4678899999999999999999999998863    101   235677888999999999999999999888


Q ss_pred             HHHHhcCCCChhhHHHHHH
Q 005139          629 ILEQECGPYHPDTLGVYSN  647 (712)
Q Consensus       629 ~~~~~~~~~~p~~~~~~~~  647 (712)
                      .        .|+...+...
T Consensus       211 ~--------~p~~~~~~~~  221 (225)
T 2vq2_A          211 N--------FPYSEELQTV  221 (225)
T ss_dssp             H--------CTTCHHHHHH
T ss_pred             h--------CCCCHHHHHH
Confidence            7        6665554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.76  E-value=1.3e-17  Score=161.88  Aligned_cols=188  Identities=16%  Similarity=0.153  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      ..++.+|.+++..|++++|+.+|++++.+        .| ....++..+|.++...|++++|+.+|++++.+        
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------   71 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------   71 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence            67889999999999999999999999998        43 44567888999999999999999999999987        


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI  591 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  591 (712)
                       .|....++..+|.+|..+|++++|+.+|++++.+.+.........+.++..+|.++...|++++|+.+|++++++    
T Consensus        72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----  146 (228)
T 4i17_A           72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----  146 (228)
T ss_dssp             -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence             455688899999999999999999999999999866542111234467899999999999999999999999875    


Q ss_pred             CCCCChH--HHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139          592 GERKSAF--FGVALNQMGLACVQRYSI---------------------------NEAVELFEEARSILEQECGPYHPDTL  642 (712)
Q Consensus       592 ~~~~~~~--~~~~~~~lg~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~p~~~  642 (712)
                          .+.  ...++..+|.+|...|+.                           ++|+.+|++++++        +|+..
T Consensus       147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~  214 (228)
T 4i17_A          147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT  214 (228)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence                344  568899999999998888                           8899999999988        88888


Q ss_pred             HHHHHHHHHHH
Q 005139          643 GVYSNLAGTYD  653 (712)
Q Consensus       643 ~~~~~La~~~~  653 (712)
                      .++..++.+..
T Consensus       215 ~~~~~l~~i~~  225 (228)
T 4i17_A          215 EIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            88887777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.76  E-value=1.3e-17  Score=187.24  Aligned_cols=176  Identities=19%  Similarity=0.243  Sum_probs=147.1

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      +..|..+.+++++|.+|..+|++++|+.+|++++++        .|....++.+||.+|..+|++++|+.+|++++++  
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--   72 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--   72 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            345777888999999999999999999999999988        7788888999999999999999999999999988  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI  585 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  585 (712)
                             .|..+.++.++|.+|..+|++++|+++|++++++.+..       ..++.++|.+|..+|++++|+.+|++|+
T Consensus        73 -------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           73 -------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   45567888999999999999999999999998886554       4688889999999999999999999998


Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139          586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (712)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  633 (712)
                      ++        .+....++.++|.++..+|++++|.+.|++++++....
T Consensus       139 ~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          139 KL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             Hh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            86        12335788889999999999999999999998886554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.75  E-value=2.1e-17  Score=185.61  Aligned_cols=174  Identities=18%  Similarity=0.266  Sum_probs=160.8

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      .|..+.++.+||.+|..+|++++|+.+|++++++.++.        +.++.++|.+|..+|++++|+.+|++++.+    
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----   72 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--------AAAHSNLASVLQQQGKLQEALMHYKEAIRI----   72 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            68899999999999999999999999999999987543        458999999999999999999999999854    


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                        .|..+.+++++|.+|..+|++++|+.+|++++++        .|....++.++|.+|..+|++++|+.+|++++++  
T Consensus        73 --~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--  140 (723)
T 4gyw_A           73 --SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--  140 (723)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence              5667889999999999999999999999999999        8888999999999999999999999999999999  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                             .|....++.++|.++..+|++++|++.+++++++.++.
T Consensus       141 -------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          141 -------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             -------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             -------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence                   45567889999999999999999999999999988753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.73  E-value=4.7e-16  Score=154.19  Aligned_cols=223  Identities=15%  Similarity=0.140  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV  341 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  341 (712)
                      +..+..++.+|..++..|+|++|+..|++++...     +.++. ...+++.+|.+|...|++++|+..|++++...   
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---   82 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIY---   82 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence            3446788999999999999999999999999876     44432 24569999999999999999999999999983   


Q ss_pred             hCCCChhHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          342 LGETDPRVGETCRYLAEAHVQ--------ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE  413 (712)
Q Consensus       342 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~  413 (712)
                        ++++....+++.+|.++..        .|++++|+..|++++...+....        +...+..             
T Consensus        83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~a~~~-------------  139 (261)
T 3qky_A           83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--------VDDATQK-------------  139 (261)
T ss_dssp             --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--------HHHHHHH-------------
T ss_pred             --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--------HHHHHHH-------------
Confidence              3356788999999999999        99999999999999998766532        1111111             


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc------
Q 005139          414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT------  487 (712)
Q Consensus       414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------  487 (712)
                       +...         .......++.+|.+|...|++++|+..|++++..     .++.+....++..+|.+|..+      
T Consensus       140 -~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~~~  204 (261)
T 3qky_A          140 -IREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQSVR  204 (261)
T ss_dssp             -HHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred             -HHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccchh
Confidence             1111         0122345788999999999999999999999987     122334788999999999977      


Q ss_pred             ----CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005139          488 ----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (712)
Q Consensus       488 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (712)
                          |++++|+.+|+++++....      ++....+...++.++...++++++.
T Consensus       205 ~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          205 ARQPERYRRAVELYERLLQIFPD------SPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hcccchHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                9999999999999999543      5667788888999988888876654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=2.5e-16  Score=152.62  Aligned_cols=189  Identities=11%  Similarity=0.009  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..++.+|.+++..|++++|+.+|++++.+.+    +.+.    .+++.+|.++...|++++|+.+|++++..       
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------   71 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKK-------   71 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------
Confidence            36788999999999999999999999998862    0332    24777999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  424 (712)
                       +|....++..+|.+|...|++++|+.++++++.+.+.... .....+.++..+|.++...|++++|+.+|++++     
T Consensus        72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-----  144 (228)
T 4i17_A           72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT-IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT-----  144 (228)
T ss_dssp             -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----
T ss_pred             -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH-----
Confidence             6888999999999999999999999999999998765321 111234579999999999999999999999998     


Q ss_pred             CCCChh--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139          425 NDQDAE--VASVDCSIGDTYLSLSRY---------------------------DEAGFAYQKALTAFKTNKGENHPAVAS  475 (712)
Q Consensus       425 ~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (712)
                       ...|.  ...++.++|.+|...|+.                           ++|+.+|++++++        .|....
T Consensus       145 -~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~  215 (228)
T 4i17_A          145 -DVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTE  215 (228)
T ss_dssp             -TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             -hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHH
Confidence             45777  789999999999999988                           8899999999988        666667


Q ss_pred             HHHHHHHHH
Q 005139          476 VFVRLADMY  484 (712)
Q Consensus       476 ~~~~la~~~  484 (712)
                      ++..++.+.
T Consensus       216 ~~~~l~~i~  224 (228)
T 4i17_A          216 IKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.71  E-value=1e-15  Score=151.69  Aligned_cols=205  Identities=16%  Similarity=0.151  Sum_probs=169.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      .+..+..++.+|..++..|++++|+..|++++..     .++++....+++.+|.+|...|++++|+..|++++.+... 
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-   84 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-   84 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence            4455778999999999999999999999999987     2234444899999999999999999999999999999543 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH--------------HHHH
Q 005139          508 VPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIE--------------AQMG  565 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~la  565 (712)
                           .+....+++.+|.++..        .|++++|+..|++++...+...    ....++              +.+|
T Consensus        85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~a~~~~~~~~~~~~~~~~~la  155 (261)
T 3qky_A           85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE----LVDDATQKIRELRAKLARKQYEAA  155 (261)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 45567889999999999        9999999999999999876542    222233              7899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHhcC
Q 005139          566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      .+|...|++++|+..|++++...     +..+....++..+|.+|..+          |++++|+.+|++++..     .
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~  225 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----F  225 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----C
T ss_pred             HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----C
Confidence            99999999999999999999863     22333567999999999977          9999999999999987     2


Q ss_pred             CCChhhHHHHHHHHHHHHHccc
Q 005139          636 PYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       636 ~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      |++|....+...++.++..+++
T Consensus       226 p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          226 PDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHH
Confidence            4455556777777777777766

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=9.8e-16  Score=155.92  Aligned_cols=257  Identities=12%  Similarity=0.023  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHHHHhCCCChhHH
Q 005139          367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-------KGDH-------EAALEHLVLASMTMIANDQDAEVA  432 (712)
Q Consensus       367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~  432 (712)
                      ++|+..|++++...+..        ..+|..+|.++..       .|++       ++|+..|++|+..     ..|...
T Consensus        33 ~~a~~~~~~al~~~p~~--------~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-----~~p~~~   99 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHH--------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-----LLKKNM   99 (308)
T ss_dssp             HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----TTTTCH
T ss_pred             HHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----hCcccH
Confidence            78999999999988654        3478888888763       5885       8999999999831     256667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      .++..+|.++...|++++|...|++++.+        .|.... +|..+|.++...|++++|+.+|+++++...      
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p------  165 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------  165 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT------
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------
Confidence            88999999999999999999999999986        444444 899999999999999999999999998632      


Q ss_pred             CChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          512 PPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                         ....++...+.+... .|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++...  
T Consensus       166 ---~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--  233 (308)
T 2ond_A          166 ---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--  233 (308)
T ss_dssp             ---CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--
T ss_pred             ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Confidence               123445555555433 799999999999999998754       4688899999999999999999999998731  


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhhhCCCChhHHH
Q 005139          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDD  670 (712)
Q Consensus       591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~~~~p~~~~  670 (712)
                        ...+.....++..++.++...|++++|..+++++++.        .|+..... .++.+..    ...+....|+++.
T Consensus       234 --~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~--------~p~~~~~~-~~~~~~~----r~~~l~~~P~~~~  298 (308)
T 2ond_A          234 --SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA--------FREEYEGK-ETALLVD----RYKFMDLYPCSAS  298 (308)
T ss_dssp             --SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------TTTTTSSC-HHHHHHT----TTCBTTBCSSCHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccccccc-hHHHHHH----HHHhcccCCCCHH
Confidence              0011123468888999999999999999999999998        55422211 1122211    2234457788887


Q ss_pred             HHHHHHH
Q 005139          671 EKRRLAE  677 (712)
Q Consensus       671 ~~~~la~  677 (712)
                      ++..||.
T Consensus       299 ~ln~lgY  305 (308)
T 2ond_A          299 ELKALGY  305 (308)
T ss_dssp             HHHTTTC
T ss_pred             HHHhcCC
Confidence            7776653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.4e-14  Score=155.12  Aligned_cols=240  Identities=18%  Similarity=0.167  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---------SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                      ....|..+...|+|++|++.|.++++..+......         ......++..+|.+|...|++++|++++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            44567778899999999999999998776554321         123345788999999999999999999999998887


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ..+.......+...++.++...|++++|+.++++++.+.....  +.+..+.++..+|.+|...|+|.+|..++++++..
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            7665556667788899999999999999999999999988765  35567889999999999999999999999999998


Q ss_pred             HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (712)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (712)
                      ...   ..+.+..+.++..++.+|...|++++|..++++++.+...........+.++..+|.++...|+|.+|..+|.+
T Consensus       165 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          165 FKK---LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HTT---SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHh---cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            877   34567788999999999999999999999999999999887554456678889999999999999999999999


Q ss_pred             HHHHHHHhCCCCCh
Q 005139          584 AISKLRAIGERKSA  597 (712)
Q Consensus       584 al~~~~~~~~~~~~  597 (712)
                      ++..+...+.....
T Consensus       242 a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          242 SFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHTTTSSCH
T ss_pred             HHHHhhhhhhhhhH
Confidence            99998887765544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.69  E-value=3.7e-15  Score=141.20  Aligned_cols=194  Identities=13%  Similarity=0.122  Sum_probs=160.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005139          403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD  482 (712)
Q Consensus       403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  482 (712)
                      ...|++++|...++...      +++...+.++..+|.++...|++++|+.++++++.++....  +.+....++..+|.
T Consensus         3 ~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~   74 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGM   74 (203)
T ss_dssp             ----CHHHHHHHHHHHH------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence            46799999999554432      35557789999999999999999999999999999988764  36778899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 005139          483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (712)
Q Consensus       483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (712)
                      ++...|++++|+.++++++.+....  ++.......++..+|.++...|++++|+.++++++.+.+.. +.....+.++.
T Consensus        75 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~  151 (203)
T 3gw4_A           75 VERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFR  151 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence            9999999999999999999998863  32344678899999999999999999999999999998776 55556677889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 005139          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA  609 (712)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~  609 (712)
                      .+|.++...|++++|..++++++.+.+..++.  ...+.++..++.+
T Consensus       152 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~  196 (203)
T 3gw4_A          152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDS--EAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHhcccch
Confidence            99999999999999999999999999887654  3344555555543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=2.8e-15  Score=152.54  Aligned_cols=225  Identities=8%  Similarity=0.030  Sum_probs=184.3

Q ss_pred             hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHHHhCCCC
Q 005139          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM-------LGQL-------ENSLMCYTTGLE-VQKQVLGETD  346 (712)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~  346 (712)
                      ++|+..|++++...     +.++.    +|+.+|.++..       .|++       ++|+..|++++. +        +
T Consensus        33 ~~a~~~~~~al~~~-----p~~~~----~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~   95 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L   95 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred             HHHHHHHHHHHHHc-----CCCHH----HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence            78999999999886     55544    48888888764       5886       899999999998 5        5


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      |....+|..+|.++...|++++|...|++++.+.+...     .  .++..+|.++...|++++|+..|++++.      
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~------  162 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-----T--LVYIQYMKFARRAEGIKSGRMIFKKARE------  162 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-----H--HHHHHHHHHHHHHHCHHHHHHHHHHHHT------
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc-----c--HHHHHHHHHHHHhcCHHHHHHHHHHHHh------
Confidence            77788999999999999999999999999998643321     1  2688999999999999999999999984      


Q ss_pred             CChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          427 QDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ..+....++...+.+... .|++++|+.+|+++++.        .|....++..++.++...|++++|+.+|++++....
T Consensus       163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~  234 (308)
T 2ond_A          163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence            223334555555555433 79999999999999998        566688999999999999999999999999998521


Q ss_pred             cCCCCCCCh-hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          506 KPVPGVPPE-EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       506 ~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                            .+| ....+|..++.++...|+++.|..+++++++..++.
T Consensus       235 ------l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          235 ------LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             ------SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             ------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence                  022 246678899999999999999999999999998765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.67  E-value=5.6e-15  Score=139.92  Aligned_cols=195  Identities=12%  Similarity=0.146  Sum_probs=157.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (712)
                      .+..|++++|...++....        +......++..+|.++...|++++|+.++++++.++...   ...+..+.++.
T Consensus         2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~   70 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDHTAEHRALH   70 (203)
T ss_dssp             -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCcHHHHHHHH
Confidence            3567999999985544322        244678999999999999999999999999999998873   34667889999


Q ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139          522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV  601 (712)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  601 (712)
                      .+|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+..  ...+.
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~  148 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ--VAIAC  148 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch--HHHHH
Confidence            9999999999999999999999999987632333677889999999999999999999999999998776543  44567


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139          602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  651 (712)
                      ++..+|.++...|++++|+.+|++++.+.+....  ......++..++.+
T Consensus       149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence            8899999999999999999999999999877532  23344455555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.9e-14  Score=151.57  Aligned_cols=241  Identities=10%  Similarity=0.043  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-----------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQD-----------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                      ....|..+...|+|++|++.|.+++.......+.           .....++..+|.+|...|++++|+.++.+++.+..
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4556778889999999999999988644332221           23445789999999999999999999999999877


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                      ...  .......+...++.++...|++++|+.++++++.+....   ......+.++..+|.+|...|+|++|+.+++++
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~  161 (434)
T 4b4t_Q           87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE---KRVFLKHSLSIKLATLHYQKKQYKDSLALINDL  161 (434)
T ss_dssp             TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS---SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence            652  123345677788999999999999999999999998874   234556889999999999999999999999999


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      +...... ++......++..+|.+|...|++++|..++++++.+....... +...+..+..+|.++...|++.+|..+|
T Consensus       162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          162 LREFKKL-DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-TQTVAELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             HHHHTTS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHhc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9988776 5667788899999999999999999999999999988776543 3445788899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhH
Q 005139          624 EEARSILEQECGPYHPDTL  642 (712)
Q Consensus       624 ~~al~~~~~~~~~~~p~~~  642 (712)
                      .+++..+.......+...+
T Consensus       240 ~~a~~~~~~~~~~~~~~~~  258 (434)
T 4b4t_Q          240 FESFESYHNLTTHNSYEKA  258 (434)
T ss_dssp             HHHHHHHHHTTTSSCHHHH
T ss_pred             HHHHHHhhhhhhhhhHHHH
Confidence            9999998877665544433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.66  E-value=5.1e-15  Score=149.44  Aligned_cols=195  Identities=12%  Similarity=0.022  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      .+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.++++++.+.....  +....
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~  154 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHHH
Confidence            4566788899999999999999988764322222223455677899999999999999999999998744322  23445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (712)
                      +.++..+|.+|...|++++|+.+|++++.+....  +........++.++|.+|..+|++++|+.++++++.+.... +.
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~  231 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NS  231 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TB
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc
Confidence            7799999999999999999999999999887763  22222234789999999999999999999999999998764 55


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 005139          554 QSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGE  593 (712)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~  593 (712)
                      ....+.++..+|.+|..+|++++| ..+|++|+.+++..+.
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            667788999999999999999999 8889999998877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.66  E-value=5.6e-15  Score=149.12  Aligned_cols=194  Identities=12%  Similarity=0.049  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                      ..+...+..+...|++++|+..+++++..   ....+.   ....+..+|.++...+++++|+.+|++++.+....  .+
T Consensus        76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~  150 (293)
T 3u3w_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID  150 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence            34455677888999999999999998742   122222   24456679999999999999999999999853322  12


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ....+.++.++|.+|...|++++|+.+|++++.+....  +...+..+.++.++|.+|..+|++++|+.++++++.+.+.
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34457789999999999999999999999999988774  2456778889999999999999999999999999999988


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCC
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGN-YSDSYDSFKNAISKLRAIGER  594 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~  594 (712)
                      . +.....+.++..+|.+|..+|+ +++|+.+|++|+.+++..+..
T Consensus       229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~  273 (293)
T 3u3w_A          229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH  273 (293)
T ss_dssp             T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            7 6666778899999999999995 699999999999999887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.65  E-value=2.4e-14  Score=144.49  Aligned_cols=198  Identities=11%  Similarity=-0.032  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005139          263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL  342 (712)
Q Consensus       263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  342 (712)
                      .....+...+..+...|+|++|+..+.++++....   .......+..++.+|.++...|++++|+.+|++++.+...  
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--  147 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--
Confidence            34456667888999999999999999999887532   1111223445778999999999999999999999976432  


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                      ..+....+.++..+|.+|...|++++|+.+|++++.+....... ....+.+++++|.+|..+|++++|+.++++++.+.
T Consensus       148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            12233457799999999999999999999999999988776532 22233689999999999999999999999999988


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhc
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEA-GFAYQKALTAFKTNK  466 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~  466 (712)
                      ...++....+.+++++|.+|..+|++++| ..+|++|+.+++...
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~  271 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence            77777777899999999999999999999 888999999987764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=1.5e-14  Score=146.02  Aligned_cols=197  Identities=12%  Similarity=-0.017  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA--KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  339 (712)
                      ......+...+..++..|+|++|+.++++++...     +..+..  .+..+..+|.++...|++++|+.+|++++.+..
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~  146 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence            4445556666888999999999999999998864     222221  233456799999999999999999999998532


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS  419 (712)
Q Consensus       340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al  419 (712)
                      .  ..+......++..+|.+|...|++++|+.+|++++........ .....+.+++++|.+|..+|++++|+.++++++
T Consensus       147 ~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          147 T--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             C--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             c--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2  1222345678999999999999999999999999998877633 556777899999999999999999999999999


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhc
Q 005139          420 MTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNK  466 (712)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~  466 (712)
                      .+....++....+.+++++|.+|..+|+ +++|+.+|++|+.+++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~  271 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            9998888888899999999999999995 7999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.2e-14  Score=138.59  Aligned_cols=165  Identities=12%  Similarity=0.132  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------HHHHHHHcCCHHHHHH
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR----------------LADMYNRTGKLRESKS  495 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  495 (712)
                      +..+...|..++..|++++|+.+|++++.+        .|....++..                +|.+|...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            345677899999999999999999999998        8888888988                9999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH-
Q 005139          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-  574 (712)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-  574 (712)
                      +|++++++         .|....++..+|.++...|++++|+.+|++++++.+..       ..++..+|.+|+..|+. 
T Consensus        76 ~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           76 FYKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHH
Confidence            99999999         45567889999999999999999999999999987655       46889999999877643 


Q ss_pred             -HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          575 -SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       575 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                       ..+...|.+++.       ..  ....+++.+|.++...|++++|+.+|++++++
T Consensus       140 ~~~~~~~~~~~~~-------~~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          140 KKKLETDYKKLSS-------PT--KMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHC---C-------CC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhC-------CC--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             445555555432       22  22356788899999999999999999999998

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=8e-15  Score=136.25  Aligned_cols=170  Identities=20%  Similarity=0.202  Sum_probs=131.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      ......++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---   72 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---   72 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            3455667778888888888888888888887765        45556778888888888888888888888888772   


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                            +....++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.++++++..
T Consensus        73 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           73 ------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence                  2345677888888888888888888888888774432       356778888888888888888888888775


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .        +....++..+|.++...|++++|+.+|++++.+
T Consensus       140 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          140 R--------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            2        112467788888888888888888888888876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.62  E-value=2.6e-14  Score=132.67  Aligned_cols=169  Identities=16%  Similarity=0.145  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      .+..+..+|.++...|++++|+.++++++      ...+....++..+|.++...|++++|+.++++++..        .
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~   72 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVY------DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--------A   72 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTC------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHH------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence            35578899999999999999999999886      334555788999999999999999999999999998        6


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      |....++..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++...+..
T Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN---------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            6677899999999999999999999999999983         3346788999999999999999999999999875433


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                             ..++..+|.++...|++++|..++++++.+..
T Consensus       144 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          144 -------GKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                   46888999999999999999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.61  E-value=6.2e-16  Score=159.05  Aligned_cols=321  Identities=14%  Similarity=0.112  Sum_probs=150.6

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHH
Q 005139          233 SSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM  312 (712)
Q Consensus       233 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  312 (712)
                      ..|+ .++|.+++++.           ++   ..++..||.++...|++++|++.|.++-          +    ...+.
T Consensus        15 ~~~~-ld~A~~fae~~-----------~~---~~vWs~La~A~l~~g~~~eAIdsfika~----------D----~~~y~   65 (449)
T 1b89_A           15 HIGN-LDRAYEFAERC-----------NE---PAVWSQLAKAQLQKGMVKEAIDSYIKAD----------D----PSSYM   65 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccC-HHHHHHHHHhC-----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHcCC----------C----HHHHH
Confidence            3443 77777777765           11   2378889999999999999999997642          1    12478


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005139          313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA  392 (712)
Q Consensus       313 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a  392 (712)
                      .++..+...|++++|+.+++.+++..        +. ..+...++.+|.+.|++.++.++++.          +.    .
T Consensus        66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn----~  122 (449)
T 1b89_A           66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING----------PN----N  122 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTTC----------C------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc----H
Confidence            88999999999999999999887751        22 45677899999999999999988752          11    1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      .++..+|..+...|.|++|..+|.++              ..+..+|.++..+|+|++|++.++++.          .  
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~--  176 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN----------S--  176 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C--
Confidence            27999999999999999999999865              357889999999999999999999982          2  


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005139          473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG  552 (712)
Q Consensus       473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (712)
                       +.+|..++.++...|+++.|..+....+ .         +++.   +..+..+|...|++++|+.++++++.+.+..  
T Consensus       177 -~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---------~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah--  240 (449)
T 1b89_A          177 -TRTWKEVCFACVDGKEFRLAQMCGLHIV-V---------HADE---LEELINYYQDRGYFEELITMLEAALGLERAH--  240 (449)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---------CHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--
T ss_pred             -chhHHHHHHHHHHcCcHHHHHHHHHHHH-h---------CHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--
Confidence             4688889999999999999976665411 1         3333   4468899999999999999999998764332  


Q ss_pred             CCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q 005139          553 QQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS--  628 (712)
Q Consensus       553 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--  628 (712)
                           ..++..+|.+|.+  .++..+.++.|...+.+-+-+..-   ..+..|..+..+|...++++.|+...-+...  
T Consensus       241 -----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~---~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a  312 (449)
T 1b89_A          241 -----MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA---EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA  312 (449)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH---HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH---HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh
Confidence                 4567777777765  456777777776655543211000   1124678889999999999999875444311  


Q ss_pred             ----HHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          629 ----ILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       629 ----~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                          .+..+..  .+.+++.++.....|.....
T Consensus       313 ~~~~~f~~~~~--kv~n~elyYkai~fyl~~~p  343 (449)
T 1b89_A          313 WKEGQFKDIIT--KVANVELYYRAIQFYLEFKP  343 (449)
T ss_dssp             CCHHHHHHHHH--HCSSTHHHHHHHHHHHHHCG
T ss_pred             hhhHHHHHHHh--chhHHHHHHHHHHHHHhcCH
Confidence                1222211  34557778888888774433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=2.2e-15  Score=135.20  Aligned_cols=147  Identities=10%  Similarity=0.101  Sum_probs=126.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005139          397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV  476 (712)
Q Consensus       397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  476 (712)
                      .||.++...|++++|+..+++++      ...|.....++.+|.+|+..|++++|+.+|++++++        .|....+
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a   67 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGST------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKA   67 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHS------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhc------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            47888899999999999999887      567788888999999999999999999999999999        8888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhCCCCCC
Q 005139          477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL-LQKALKIYNDAPGQQS  555 (712)
Q Consensus       477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~  555 (712)
                      +..+|.+|...|++++|+.+|++++++         .|....++..+|.+|...|++++|... +++++++.|..     
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-----  133 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVEL---------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-----  133 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-----
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-----
Confidence            999999999999999999999999999         455678899999999999999887765 69999997765     


Q ss_pred             cHHHHHHHHHHHHHHcCC
Q 005139          556 TVAGIEAQMGVMYYMLGN  573 (712)
Q Consensus       556 ~~~~~~~~la~~~~~~g~  573 (712)
                        ..++..++.++...|+
T Consensus       134 --~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          134 --PAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             --HHHHHHHHHHHHTCCC
T ss_pred             --HHHHHHHHHHHHHhCc
Confidence              3577778888887775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.60  E-value=3.5e-14  Score=135.23  Aligned_cols=161  Identities=16%  Similarity=0.144  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----------------MGVMYYMLGNYSDSYDS  580 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~  580 (712)
                      +..+...|..+...|++++|+.+|++++.+.+..       ..+++.                +|.+|...|++++|+..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4567889999999999999999999999987764       346666                99999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc---
Q 005139          581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---  657 (712)
Q Consensus       581 ~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---  657 (712)
                      |++++++        .+....++..+|.++...|++++|+.+|++++++        +|+...+++++|.+|...|+   
T Consensus        77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence            9999987        2334589999999999999999999999999999        99999999999999988775   


Q ss_pred             ------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          658 ------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       658 ------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                            ...+....| ...+++.+|.++...|++++|+ ..|+++++.+|+
T Consensus       141 ~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~  189 (208)
T 3urz_A          141 KKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCC
T ss_pred             HHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence                  222322233 3346788999999999999999 999999999997

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.60  E-value=6.7e-16  Score=158.84  Aligned_cols=278  Identities=15%  Similarity=0.083  Sum_probs=129.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139          316 DTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR  395 (712)
Q Consensus       316 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  395 (712)
                      .+....|++++|..++++. .         +|   .+|..||.++...|++++|++.|.++-.             ...+
T Consensus        11 ~ll~~~~~ld~A~~fae~~-~---------~~---~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~~y   64 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERC-N---------EP---AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSY   64 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhC-C---------Ch---HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HHHH
Confidence            3445678889999988886 1         23   4899999999999999999999977421             1257


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139          396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS  475 (712)
Q Consensus       396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  475 (712)
                      ..++..+...|++++|+.+++.+++.      .+. +.+...++.+|.+.|++.++..+++.             |. ..
T Consensus        65 ~~V~~~ae~~g~~EeAi~yl~~ark~------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~  123 (449)
T 1b89_A           65 MEVVQAANTSGNWEELVKYLQMARKK------ARE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA  123 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHh------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence            78888999999999999999888642      122 46677889999999999999877742             22 24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005139          476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS  555 (712)
Q Consensus       476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (712)
                      ++..+|..+...|+|++|..+|.++                 ..+..+|.++..+|++++|++.++++..          
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~----------  176 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------  176 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC----------
Confidence            9999999999999999999999966                 1378999999999999999999999921          


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                        ..+|..++.++...|+++.|..+....+        .+ +   .-+..+..+|...|++++|+.++++++.+      
T Consensus       177 --~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--------~~-a---d~l~~lv~~Yek~G~~eEai~lLe~aL~l------  236 (449)
T 1b89_A          177 --TRTWKEVCFACVDGKEFRLAQMCGLHIV--------VH-A---DELEELINYYQDRGYFEELITMLEAALGL------  236 (449)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHTTTTTT--------TC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred             --chhHHHHHHHHHHcCcHHHHHHHHHHHH--------hC-H---hhHHHHHHHHHHCCCHHHHHHHHHHHhCC------
Confidence              2578888999999999999966655411        12 2   22446888999999999999999999988      


Q ss_pred             CCChhhHHHHHHHHHHHHHccc---------hhhhCCCCh-----hHHHHHHHHHHHHHHhccHHHHH
Q 005139          636 PYHPDTLGVYSNLAGTYDAIGR---------EEKLGTANP-----DVDDEKRRLAELLKEAGRVRSRK  689 (712)
Q Consensus       636 ~~~p~~~~~~~~La~~~~~~g~---------~~~l~~~~p-----~~~~~~~~la~~~~~~g~~~~A~  689 (712)
                        ++....++..||.+|.+-.-         +.......|     +.+..|..+..+|...|+++.|.
T Consensus       237 --e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~  302 (449)
T 1b89_A          237 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  302 (449)
T ss_dssp             --TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             --cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence              67778889999999886654         111122333     34556889999999999999998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=6.8e-15  Score=166.24  Aligned_cols=202  Identities=12%  Similarity=-0.018  Sum_probs=166.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139          319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM  398 (712)
Q Consensus       319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  398 (712)
                      ...|++++|+..|++++...-......+|....++..+|.++...|++++|+..|++++++.+..        ..+++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--------WRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------HHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------HHHHHHH
Confidence            77899999999999998211111112267788899999999999999999999999999987654        4489999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005139          399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV  478 (712)
Q Consensus       399 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  478 (712)
                      |.++...|++++|+..|++++.+      .|....++.++|.++..+|++++ +.+|++++++        +|....+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~  538 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAF  538 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHH
Confidence            99999999999999999999853      45557889999999999999999 9999999999        888889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhCCC
Q 005139          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA-IKLLQKALKIYNDAPG  552 (712)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~  552 (712)
                      ++|.++..+|++++|+..|++++++         .|....++.++|.++...++.+++ ...+.+|+........
T Consensus       539 ~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~  604 (681)
T 2pzi_A          539 GLARARSAEGDRVGAVRTLDEVPPT---------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP  604 (681)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCTT---------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhccc---------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999887         566788999999999888876666 6778888877776643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=5.5e-15  Score=166.99  Aligned_cols=192  Identities=13%  Similarity=-0.005  Sum_probs=163.5

Q ss_pred             HHcCCHhHHHHHHHHhh--------chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          276 CSLGQYNEAIPVLEQSI--------EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       276 ~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      ...|++++|+..|++++        ...     +++.    .+++.+|.++...|++++|+..|++++++        +|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-----p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p  464 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-----SESV----ELPLMEVRALLDLGDVAKATRKLDDLAER--------VG  464 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-----TTCS----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HC
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-----ccch----hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------Cc
Confidence            77899999999999998        433     3333    35899999999999999999999999998        57


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      ....+++.+|.++...|++++|+..|++++++.+...        .++.++|.++...|++++ +.+|++++.      .
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--------~~~~~lg~~~~~~g~~~~-~~~~~~al~------~  529 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--------APKLALAATAELAGNTDE-HKFYQTVWS------T  529 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--------HHHHHHHHHHHHHTCCCT-TCHHHHHHH------H
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHcCChHH-HHHHHHHHH------h
Confidence            7789999999999999999999999999999987653        378999999999999999 999999985      3


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHhc
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES-KSYCENALRIYEK  506 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~  506 (712)
                      .|....+++++|.++..+|++++|+..|++++++        .|....++.++|.++...++.+++ ...+.+|++.+..
T Consensus       530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~  601 (681)
T 2pzi_A          530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA  601 (681)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence            5666778999999999999999999999999998        899999999999999888876666 6778888887766


Q ss_pred             C
Q 005139          507 P  507 (712)
Q Consensus       507 ~  507 (712)
                      .
T Consensus       602 ~  602 (681)
T 2pzi_A          602 L  602 (681)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.59  E-value=2.4e-15  Score=134.93  Aligned_cols=147  Identities=12%  Similarity=0.162  Sum_probs=124.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 005139          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (712)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (712)
                      .||.++...|++++|+..+++++..         .|.....++.+|.+|...|++++|+.+|++++++.+..       .
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence            4788888999999999999998776         56677788999999999999999999999999987655       4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHhcCCC
Q 005139          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL-FEEARSILEQECGPY  637 (712)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  637 (712)
                      .++..+|.+|...|++++|+.+|++++++        .+....++..+|.+|...|++++|... +++|+++        
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------  129 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------  129 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence            78999999999999999999999999987        233457899999999999999887765 5999999        


Q ss_pred             ChhhHHHHHHHHHHHHHccc
Q 005139          638 HPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       638 ~p~~~~~~~~La~~~~~~g~  657 (712)
                      +|+...++..++.++...|+
T Consensus       130 ~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          130 FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             STTCHHHHHHHHHHHHTCCC
T ss_pred             CcCCHHHHHHHHHHHHHhCc
Confidence            89888999999999888774

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.59  E-value=7.4e-14  Score=149.13  Aligned_cols=152  Identities=8%  Similarity=-0.076  Sum_probs=144.0

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      ..+..+..+|+|++|+.++++++++....+|++|+. .+.++.+||.+|..+|+|++|+.++++++++.+..+|.++|.+
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            345567789999999999999999999999999997 5778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                      +..+.+||.+|..+|++++|+.+|++|+++.....+++++..+.++..++.++..++.+++|...|.++.+.+
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.58  E-value=9.3e-14  Score=125.76  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=129.1

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      +....+.++..+|.++...|++++|+.++++++.+.....  +....+.++..+|.++...|++++|+.++++++.+...
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4456677888889999999999999999999988877653  24555678888999999999999999999999988776


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                      .   .+.+....++..+|.++...|++++|+.++++++.+.... +.......++..+|.++...|++++|+.++++++.
T Consensus        82 ~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           82 L---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             h---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3   3345567788899999999999999999999999888776 44556677888899999999999999999999988


Q ss_pred             HHHH
Q 005139          587 KLRA  590 (712)
Q Consensus       587 ~~~~  590 (712)
                      +.+.
T Consensus       158 ~~~~  161 (164)
T 3ro3_A          158 ISRE  161 (164)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            7654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.58  E-value=5.9e-14  Score=149.91  Aligned_cols=157  Identities=13%  Similarity=0.082  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccc
Q 005139          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (712)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (712)
                      ++..+..+..+|+ |++|+.++++++++.++.. +..+|..+.++.+||.+|..+|+|++|+.++++++++....+|++|
T Consensus       312 ~le~a~~~~~qg~-~~eA~~l~~~aL~~~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          312 TLEKIDKARSEGL-YHEVVKLCRECLEKQEPVF-ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3445556778887 9999999999999998876 7888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       304 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      |. .+..+++||.+|..+|++++|+.+|++|+++....+|+++|.+..+...++.++..++.+.+|...|.++.+...+.
T Consensus       390 p~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          390 AQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98 46789999999999999999999999999999999999999999999999999999999999999999998766433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.57  E-value=2.3e-13  Score=131.28  Aligned_cols=181  Identities=12%  Similarity=0.034  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      ..++.+|..++..|++++|+..|++++..     .++.+....+++.+|.+|...|++++|+..|+++++....      
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------   73 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------   73 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------
Confidence            45677777888888888888888887776     1223344567778888888888888888888888877433      


Q ss_pred             ChhHHHHHHHHHHHHHH------------------cccHHHHHHHHHHHHHHHHhCCCCCC----------cHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYES------------------MNELEQAIKLLQKALKIYNDAPGQQS----------TVAGIEAQM  564 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~l  564 (712)
                      .+....+++.+|.++..                  .|++++|+..|++++...|+......          ........+
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~  153 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV  153 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445567777777765                  68999999999999987765421110          011122578


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      |.+|...|++++|+..|+++++..     +..+....++..+|.+|..+|++++|+..++.+...
T Consensus       154 a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          154 AEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            999999999999999999999863     223455689999999999999999999999987664

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.57  E-value=3.7e-11  Score=133.29  Aligned_cols=434  Identities=8%  Similarity=-0.047  Sum_probs=280.2

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC---HhHHH
Q 005139          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ---YNEAI  285 (712)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~---~~~A~  285 (712)
                      .+......+|.....+..++......+. +..+...|++++..+         |.....+...+..-...++   ++.+.
T Consensus        54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~  123 (679)
T 4e6h_A           54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIE  123 (679)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred             HHHHHHHHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence            4555567789999999999999888886 999999999999987         3335556666777778888   99999


Q ss_pred             HHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCH----HHHH----HHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL----ENSL----MCYTTGLEVQKQVLGETDPRVGETCRYLA  357 (712)
Q Consensus       286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la  357 (712)
                      .+|++++...     +..+.  +.+|..........++.    +++.    ..|++|+..    .|.-++....+|....
T Consensus       124 ~lfeRal~~~-----~~~~s--v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi  192 (679)
T 4e6h_A          124 PVLARCLSKE-----LGNND--LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYL  192 (679)
T ss_dssp             HHHHHHTCSS-----SCCCC--HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHH
T ss_pred             HHHHHHHHhc-----CCCCC--HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHH
Confidence            9999999875     11122  22355554444444443    3444    555555544    3431222233443333


Q ss_pred             HHHH---------HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHH
Q 005139          358 EAHV---------QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL----------ICETKGDHEAALEHLVLA  418 (712)
Q Consensus       358 ~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~----------~~~~~g~~~~A~~~~~~a  418 (712)
                      ....         ..++++.+..+|++++.+ |..   ........|...-.          +-....+|+.|...+.+.
T Consensus       193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~---~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~  268 (679)
T 4e6h_A          193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMD---CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW  268 (679)
T ss_dssp             HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCS---SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccH---HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence            3222         344577888888888752 110   00111111111110          111122344455444432


Q ss_pred             HHHHHhCCC--------------------ChhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhcCCC
Q 005139          419 SMTMIANDQ--------------------DAEVASVDCSIGDTYLSLSR---------YDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       419 l~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~  469 (712)
                      .........                    .......|...  +-+...+         .......|++++..        
T Consensus       269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y--i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------  338 (679)
T 4e6h_A          269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW--IRWESDNKLELSDDLHKARMTYVYMQAAQH--------  338 (679)
T ss_dssp             HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHH--HHHHHhCCccccchhhHHHHHHHHHHHHHH--------
Confidence            221111110                    01222333333  3333322         23456789999988        


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      .|....+|...+..+...|+.++|. ..|++|+..+         |.....+..++.+....|++++|..+|++++....
T Consensus       339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7778899999999999999999997 9999999873         23356788899999999999999999999998643


Q ss_pred             h--------CCCC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005139          549 D--------APGQ-------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR  613 (712)
Q Consensus       549 ~--------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~  613 (712)
                      .        .+..       ......+|...+.+..+.|+.+.|..+|.+|+...   ... .   ..++...|.+....
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~-~---~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLV-T---PDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGS-C---THHHHHHHHHHHTT
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC-C---hHHHHHHHHHHHHh
Confidence            1        1100       00234577888888888999999999999998741   111 1   24555666666665


Q ss_pred             C-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCCh---hHHHHHHHHHHHHHHh
Q 005139          614 Y-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANP---DVDDEKRRLAELLKEA  682 (712)
Q Consensus       614 g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p---~~~~~~~~la~~~~~~  682 (712)
                      + +++.|..+|+.+++.        .|+....+...+......|+       ++......|   .....+......-...
T Consensus       483 ~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~  554 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV  554 (679)
T ss_dssp             TSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence            5 599999999999998        55555666677777777776       343334444   5667888888888999


Q ss_pred             ccHHHHHHHHHHHHHHhccc
Q 005139          683 GRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       683 g~~~~A~~~~l~~~l~~~p~  702 (712)
                      |+.+.+. +.++++++..|+
T Consensus       555 G~~~~~~-~v~~R~~~~~P~  573 (679)
T 4e6h_A          555 GSLNSVR-TLEKRFFEKFPE  573 (679)
T ss_dssp             CCSHHHH-HHHHHHHHHSTT
T ss_pred             CCHHHHH-HHHHHHHHhCCC
Confidence            9999999 999999999986

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.57  E-value=3.2e-13  Score=122.21  Aligned_cols=157  Identities=21%  Similarity=0.176  Sum_probs=141.7

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN  425 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  425 (712)
                      .+..+.++..+|.++...|++++|+.++++++.+.+....  ....+.++..+|.++...|++++|+.++++++......
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3466789999999999999999999999999999988653  35556789999999999999999999999999998888


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ++.+....++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++++.+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999987764  3566788999999999999999999999999999976


Q ss_pred             c
Q 005139          506 K  506 (712)
Q Consensus       506 ~  506 (712)
                      +
T Consensus       161 ~  161 (164)
T 3ro3_A          161 E  161 (164)
T ss_dssp             T
T ss_pred             H
Confidence            5

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.56  E-value=1.4e-13  Score=132.87  Aligned_cols=182  Identities=14%  Similarity=0.036  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ...++.+|..++..|++++|+..|++++...+...     ....+++.+|.++...|++++|+..|++++..   .+..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~   75 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCC
Confidence            35788999999999999999999999998765432     22457899999999999999999999998854   34555


Q ss_pred             hHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--------------HHH
Q 005139          430 EVASVDCSIGDTYLS------------------LSRYDEAGFAYQKALTAFKTNKGENHPAVA--------------SVF  477 (712)
Q Consensus       430 ~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~  477 (712)
                      ....+++.+|.++..                  .|++++|+..|+++++...     +++...              ...
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-----~~~~a~~a~~~l~~~~~~~~~~~  150 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-----NSQYTTDATKRLVFLKDRLAKYE  150 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-----TCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-----CChhHHHHHHHHHHHHHHHHHHH
Confidence            566788888988876                  5789999999999988621     122211              222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ..+|.+|...|++++|+..|+++++.+..      .+....++..+|.+|..+|++++|+..++++....+..
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD------TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTT------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcC------CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            67899999999999999999999999544      45567899999999999999999999999887655443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.52  E-value=2.1e-12  Score=129.00  Aligned_cols=217  Identities=10%  Similarity=0.056  Sum_probs=186.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG--KLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (712)
                      .....++|+..+.++|.+        +|....+|+..+.++...|  ++++++.+++.++.+         +|....+|+
T Consensus        45 ~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~y~aW~  107 (306)
T 3dra_A           45 AEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------NEKNYQIWN  107 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------CTTCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------CcccHHHHH
Confidence            334447999999999999        9999999999999999999  999999999999998         444567888


Q ss_pred             HHHHHH----HHc---ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhC
Q 005139          522 DVSSIY----ESM---NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--DSYDSFKNAISKLRAIG  592 (712)
Q Consensus       522 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~  592 (712)
                      ..+.++    ...   +++++++.++.+++...++.       ..++...+.++...|.++  ++++++.++++.     
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----  175 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----  175 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----
Confidence            888888    666   78999999999999987766       468999999999999998  999999999985     


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--------h
Q 005139          593 ERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--------E  658 (712)
Q Consensus       593 ~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--------~  658 (712)
                         .+....+|...+.++...+.      ++++++++.+++.+        +|....+++.++.++...|+        .
T Consensus       176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~  244 (306)
T 3dra_A          176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS  244 (306)
T ss_dssp             ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence               12234788999999988887      99999999999999        99999999999999999988        1


Q ss_pred             hhhC---CCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcc
Q 005139          659 EKLG---TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD-ANS  701 (712)
Q Consensus       659 ~~l~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~-~~p  701 (712)
                      ..+.   ...|....++..|+.+|.+.|+.++|+ +.|+.+.+ .+|
T Consensus       245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dp  290 (306)
T 3dra_A          245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNP  290 (306)
T ss_dssp             HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCG
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccCh
Confidence            1111   124777889999999999999999999 99999997 577

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.50  E-value=4e-13  Score=116.24  Aligned_cols=117  Identities=14%  Similarity=0.131  Sum_probs=106.5

Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (712)
                      .|..+..+.++|..|+..|+|++|+.+|++++++.+..       ..++..+|.+|..+|++++|+..|++++++     
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL-----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence            68889999999999999999999999999999986654       468999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       593 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  652 (712)
                         .+....++..+|.++..+|++++|+..|++++++        +|+...++..|+.++
T Consensus        77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred             ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence               2234579999999999999999999999999999        999999999998774

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=5.1e-13  Score=115.57  Aligned_cols=117  Identities=16%  Similarity=0.275  Sum_probs=99.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .+|..+..+.++|..|+..|+|++|+.+|++++++        .|....++.++|.+|..+|++++|+..|++++++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            56888888999999999999999999999999988        7888889999999999999999999999999988   


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                            .|....++..+|.++..+|++++|+..|++++++.|..       ..++..++.+
T Consensus        77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-------~~a~~~l~~~  124 (126)
T 4gco_A           77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-------EEAREGVRNC  124 (126)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHH
T ss_pred             ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-------HHHHHHHHHh
Confidence                  44457789999999999999999999999999886654       2455556554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=2.7e-13  Score=125.29  Aligned_cols=170  Identities=16%  Similarity=0.030  Sum_probs=136.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005139          217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV  296 (712)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~  296 (712)
                      +|.....++.+|..++..|+ +++|+..|++++...         |....++..+|.++...|++++|+..|++++... 
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-   70 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-   70 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred             CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence            34445568899999999997 999999999999876         5668889999999999999999999999998875 


Q ss_pred             hhhcccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          297 IEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (712)
Q Consensus       297 ~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (712)
                          + ++..    +..++.+. ...+...+|+..|++++++        +|....+++.+|.++...|++++|+..|++
T Consensus        71 ----p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           71 ----Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             ----C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                3 3321    22333332 2333444689999999988        688889999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                      ++...+....      ..++..+|.++...|++++|+..|++++.
T Consensus       134 ~l~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          134 ILKVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9987654322      23688999999999999999999998874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.47  E-value=5.9e-12  Score=125.71  Aligned_cols=238  Identities=7%  Similarity=-0.052  Sum_probs=195.8

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      .....++|+.++.+++.+.+..        ..+++..+.++...|  ++++++.++..++.      ..|....+++..+
T Consensus        45 ~~e~s~~aL~~t~~~L~~nP~~--------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------~nPk~y~aW~~R~  110 (306)
T 3dra_A           45 AEEYSERALHITELGINELASH--------YTIWIYRFNILKNLPNRNLYDELDWCEEIAL------DNEKNYQIWNYRQ  110 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------HCTTCCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcHH--------HHHHHHHHHHHHHcccccHHHHHHHHHHHHH------HCcccHHHHHHHH
Confidence            3344579999999999998765        348999999999999  99999999999984      3555667888888


Q ss_pred             HHH----HHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhcCCCC
Q 005139          440 DTY----LSL---SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR--ESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       440 ~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~  510 (712)
                      .++    ...   +++++++.++.++++.        +|....+|...+.++...|.++  +++++++++++.       
T Consensus       111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-------  175 (306)
T 3dra_A          111 LIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-------  175 (306)
T ss_dssp             HHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-------
Confidence            888    666   8999999999999998        8999999999999999999998  999999999998       


Q ss_pred             CCChhHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNE------LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-SYDSFKN  583 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~  583 (712)
                        ++....+|...+.++...+.      ++++++++.+++...+..       ..+++.++.++...|+..+ ...++.+
T Consensus       176 --d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          176 --DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-------PSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             --CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-------HHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             --CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-------ccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence              45567889999999999987      999999999999986655       3688899999999998555 4445565


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHhcCCCChhhHHHHHHHHH
Q 005139          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQECGPYHPDTLGVYSNLAG  650 (712)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~p~~~~~~~~La~  650 (712)
                      ++.+-    .. .+....++..++.+|.+.|+.++|+++|+.+.+ +        +|.....+...+.
T Consensus       247 ~~~~~----~~-~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpir~~yW~~~~~  301 (306)
T 3dra_A          247 FVDLE----KD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPIRSNFWDYQIS  301 (306)
T ss_dssp             TEEGG----GT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHH
T ss_pred             HHhcc----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHh
Confidence            55421    00 122346899999999999999999999999886 5        8887777766654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.45  E-value=2.5e-12  Score=122.68  Aligned_cols=175  Identities=12%  Similarity=0.112  Sum_probs=145.1

Q ss_pred             hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (712)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (712)
                      .+|+.+|+++.+..           ...+++.||.+|...+++++|+.+|+++++.          ....+++.||.+|.
T Consensus         3 ~eA~~~~~~aa~~g-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG-----------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHH
Confidence            45778888887642           2335899999999999999999999999765          34578999999999


Q ss_pred             HhC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCh--hH
Q 005139          362 QAL----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDA--EV  431 (712)
Q Consensus       362 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~--~~  431 (712)
                      . +    ++++|+.+|+++.+..          ...+++.||.+|..    .+++++|+.+|+++..      ..+  ..
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~g----------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~  124 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEAG----------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAA  124 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcch
Confidence            8 7    9999999999996531          14478999999988    8999999999999972      333  45


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHH
Q 005139          432 ASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-G-----KLRESKSYCENAL  501 (712)
Q Consensus       432 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al  501 (712)
                      +.++++||.+|..    .+++++|+.+|+++++.         +....++++||.+|... |     ++++|+.+|+++.
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            8899999999999    89999999999999875         12234789999999864 3     8999999999999


Q ss_pred             HH
Q 005139          502 RI  503 (712)
Q Consensus       502 ~~  503 (712)
                      +.
T Consensus       196 ~~  197 (212)
T 3rjv_A          196 LE  197 (212)
T ss_dssp             HH
T ss_pred             Hc
Confidence            87

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.45  E-value=1.5e-12  Score=130.57  Aligned_cols=170  Identities=15%  Similarity=0.014  Sum_probs=148.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhh
Q 005139          218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI  297 (712)
Q Consensus       218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~  297 (712)
                      |.....++.+|..+...|+ +++|+..|++++...         |....+++.+|.++...|++++|+..|++++...  
T Consensus       114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--  181 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLS---------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--  181 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred             CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence            7888999999999999997 999999999999875         4457789999999999999999999999998875  


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (712)
Q Consensus       298 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (712)
                         ++..    ..+...+..+...++.++|+..|++++..        +|....+++.+|.++...|++++|+..|++++
T Consensus       182 ---p~~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l  246 (287)
T 3qou_A          182 ---QDTR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHL  246 (287)
T ss_dssp             ---CSHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---cchH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               3222    23667777788889999999999999998        78889999999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       378 ~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                      ...+....      ..++..++.++...|+.++|...|++++.
T Consensus       247 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          247 RXDLTAAD------GQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHCTTGGG------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hccccccc------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            98765421      34788999999999999999999998874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.44  E-value=1.5e-12  Score=130.57  Aligned_cols=169  Identities=15%  Similarity=0.094  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      |.....+..+|..+...|++++|+..|++++...+..        ..++..+|.++...|++++|+..+++++.      
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------~~a~~~la~~~~~~g~~~~A~~~l~~~~~------  179 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--------GEIGLLLAETLIALNRSEDAEAVLXTIPL------  179 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHHHTTCHHHHHHHHTTSCG------
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--------hhHHHHHHHHHHHCCCHHHHHHHHHhCch------
Confidence            5566788999999999999999999999999987654        34799999999999999999999998863      


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ..|.........+..+...++.++|+..|++++..        .|....+++.+|.++...|++++|+..|.++++.   
T Consensus       180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---  248 (287)
T 3qou_A          180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---  248 (287)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---
Confidence            23445566667777788899999999999999998        8888999999999999999999999999999998   


Q ss_pred             CCCCCCChhH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          507 PVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       507 ~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                            .|..  ..++..++.++...|+.++|...|++++..
T Consensus       249 ------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          249 ------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             ------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                  3333  678999999999999999999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=6.8e-13  Score=147.25  Aligned_cols=153  Identities=13%  Similarity=0.052  Sum_probs=120.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHH
Q 005139          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (712)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (712)
                      .|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++++         .|....++..+|
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLG   64 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------STTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Confidence            47899999999999988        7777889999999999999999999999999987         344578899999


Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 005139          525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN  604 (712)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  604 (712)
                      .+|..+|++++|+.+|++++++.+..       ..++..+|.+|...|++++|+.+|++++++.        +....++.
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~  129 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA  129 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence            99999999999999999999986543       4688999999999999999999999999862        22347899


Q ss_pred             HHHHHHHHh---CCHHHHHHHHHHHHHH
Q 005139          605 QMGLACVQR---YSINEAVELFEEARSI  629 (712)
Q Consensus       605 ~lg~~~~~~---g~~~~A~~~~~~al~~  629 (712)
                      .+|.++..+   |++++|...|+++++.
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            999999999   9999999999999987

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.43  E-value=1.5e-12  Score=124.26  Aligned_cols=174  Identities=14%  Similarity=0.078  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc
Q 005139          326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK  405 (712)
Q Consensus       326 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~  405 (712)
                      +|+.+|+++.+.          ..+.+++.||.+|...+++++|+.+|+++++..    .      ..+++.||.+|.. 
T Consensus         4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~------~~a~~~lg~~y~~-   62 (212)
T 3rjv_A            4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----D------GDALALLAQLKIR-   62 (212)
T ss_dssp             CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----C------HHHHHHHHHHTTS-
T ss_pred             hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----C------HHHHHHHHHHHHc-
Confidence            577788887764          345789999999999999999999999998641    1      3578999999998 


Q ss_pred             C----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCH--HHHH
Q 005139          406 G----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHP--AVAS  475 (712)
Q Consensus       406 g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~  475 (712)
                      +    ++++|+.+|+++..        +..+.+++++|.+|..    .+++++|+.+|+++++.        .+  ..+.
T Consensus        63 ~g~~~~~~~A~~~~~~A~~--------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~~~~  126 (212)
T 3rjv_A           63 NPQQADYPQARQLAEKAVE--------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDAAVD  126 (212)
T ss_dssp             STTSCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcchHH
Confidence            7    99999999999963        2346788999999998    89999999999999876        44  5688


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc-c-----cHHHHHHHHHHHHH
Q 005139          476 VFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-N-----ELEQAIKLLQKALK  545 (712)
Q Consensus       476 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~  545 (712)
                      +++.||.+|..    .+++++|+.+|+++++.. .         ...++++||.+|... |     ++++|+.+|+++.+
T Consensus       127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~---------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-R---------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-C---------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-C---------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999    899999999999998861 1         134689999999865 3     89999999999988


Q ss_pred             H
Q 005139          546 I  546 (712)
Q Consensus       546 ~  546 (712)
                      .
T Consensus       197 ~  197 (212)
T 3rjv_A          197 E  197 (212)
T ss_dssp             H
T ss_pred             c
Confidence            6

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.43  E-value=5.8e-13  Score=122.99  Aligned_cols=167  Identities=14%  Similarity=0.036  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ...+..+|..+...|++++|+..|++++...+..        ..++..+|.++...|++++|+..|++++..      .|
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~------~p   71 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR--------GDVKLAKADCLLETKQFELAQELLATIPLE------YQ   71 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGG------GC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhc------cC
Confidence            3457788999999999999999999999988765        347999999999999999999999987632      22


Q ss_pred             hHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          430 EVASVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       430 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                       ....+..++.+. ...++..+|+..+++++++        .|....++..+|.++...|++++|+.+|++++++...  
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--  140 (176)
T 2r5s_A           72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG--  140 (176)
T ss_dssp             -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--
T ss_pred             -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--
Confidence             122333334332 2333445689999999998        8888899999999999999999999999999887321  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                           +....++..+|.++...|++++|+..|++++..
T Consensus       141 -----~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          141 -----AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             -----TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -----cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                 112457899999999999999999999998864

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.42  E-value=3.1e-13  Score=131.51  Aligned_cols=219  Identities=12%  Similarity=0.007  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI-------GDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                      ++..|.-+ ..+++..|+..|.+++.      ..|..+.+|..+       +.++...+++.+++..+++++.+......
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~   82 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITN------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN   82 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHH------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence            44455555 58999999999999984      578889999999       89999999999999999999886332221


Q ss_pred             CCCH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH
Q 005139          468 ENHP-------------AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE  534 (712)
Q Consensus       468 ~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  534 (712)
                      ....             ....+...++.++...|+|++|.+.|..++..         .|... ..+.+|.++...++|+
T Consensus        83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---------~p~~~-~~~~~a~l~~~~~r~~  152 (282)
T 4f3v_A           83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---------GSEHL-VAWMKAVVYGAAERWT  152 (282)
T ss_dssp             CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---------TCHHH-HHHHHHHHHHHTTCHH
T ss_pred             hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCchH-HHHHHHHHHHHcCCHH
Confidence            1000             12456667899999999999999999877653         34445 8899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005139          535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY  614 (712)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g  614 (712)
                      +|+.+|+++...     ..+.....+++.+|.++..+|++++|+.+|++++.     +...+.....+++.+|.++..+|
T Consensus       153 dA~~~l~~a~~~-----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lG  222 (282)
T 4f3v_A          153 DVIDQVKSAGKW-----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQG  222 (282)
T ss_dssp             HHHHHHTTGGGC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcc-----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcC
Confidence            999999865432     11112245889999999999999999999999974     12113225678999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139          615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (712)
Q Consensus       615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La  649 (712)
                      +.++|...|++++..        +|+ ..+...|.
T Consensus       223 r~deA~~~l~~a~a~--------~P~-~~~~~aL~  248 (282)
T 4f3v_A          223 NESAAVALLEWLQTT--------HPE-PKVAAALK  248 (282)
T ss_dssp             CHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence            999999999999998        887 66655554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.41  E-value=1.2e-11  Score=120.43  Aligned_cols=220  Identities=12%  Similarity=-0.001  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------HHHHHHcCCHhHHHHHHHHhhch
Q 005139          222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-------AAIYCSLGQYNEAIPVLEQSIEI  294 (712)
Q Consensus       222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l-------a~~~~~~g~~~~A~~~~~~al~~  294 (712)
                      ..++..|.-+ ..++ +..|.+.|.+++.+.         |..+.++..+       +.++...+++.+++..+.+++.+
T Consensus         8 ~~~~~~~~~~-~~~d-~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l   76 (282)
T 4f3v_A            8 ASLFESAVSM-LPMS-EARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI   76 (282)
T ss_dssp             HHHHHHHHHH-TTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred             HHHHHHHhcc-cCCC-HHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456666665 5665 999999999999875         5668888888       89999999999999999999998


Q ss_pred             hhhhhcccch-H-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          295 PVIEEGQEHA-L-----------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (712)
Q Consensus       295 ~~~~~~~~~~-~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (712)
                      .+........ .           ..-.+...++.++...|+|++|...|..++..        .|... +.+.+|.+++.
T Consensus        77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~  147 (282)
T 4f3v_A           77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA  147 (282)
T ss_dssp             CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred             ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence            7554433322 0           11345778899999999999999999987764        56666 89999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHH
Q 005139          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGDT  441 (712)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~  441 (712)
                      .++|++|+.+|+.+....      +......+++.+|.++..+|++++|+.+|++++.    ....|. ...+.+.+|.+
T Consensus       148 ~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gla  217 (282)
T 4f3v_A          148 AERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMA  217 (282)
T ss_dssp             TTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHH
Confidence            999999999998654321      1122245789999999999999999999999862    222144 77889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL  480 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  480 (712)
                      +..+|+.++|...|++++..        +|. ..+...|
T Consensus       218 L~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL  247 (282)
T 4f3v_A          218 RRSQGNESAAVALLEWLQTT--------HPE-PKVAAAL  247 (282)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHH
Confidence            99999999999999999998        666 5555444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.41  E-value=5.9e-12  Score=132.21  Aligned_cols=121  Identities=8%  Similarity=0.032  Sum_probs=114.5

Q ss_pred             HcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 005139          529 SMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG  607 (712)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg  607 (712)
                      ..|+|++|+.++++++++....+|..+ .++.++.+||.+|..+|+|++|+.++++++++.+...+..++..+..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            568999999999999999998888765 7889999999999999999999999999999999998888999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139          608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (712)
Q Consensus       608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La  649 (712)
                      .+|..+|++++|+.+|++|+++++..+|++||.+..+..+|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999999999999999887775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.40  E-value=4.9e-12  Score=133.24  Aligned_cols=131  Identities=12%  Similarity=0.019  Sum_probs=122.0

Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139          525 SIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (712)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (712)
                      .-+..+|+|++|+..+++++++....++..+ .++.++.++|.+|..+|+|++|+.++++++.+.+...+..++..+..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455789999999999999999888777765 788899999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                      ++||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=5e-12  Score=109.51  Aligned_cols=108  Identities=10%  Similarity=0.174  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ++.+.++.++|..++..|+|++|+.+|++++++         .|..+.++.++|.+|..+|++++|+..+++++++.+..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            566788999999999999999999999999999         44567889999999999999999999999999999988


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .......+.++..+|.++..+|++++|+.+|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666677889999999999999999999999999875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=6e-12  Score=108.98  Aligned_cols=109  Identities=18%  Similarity=0.391  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      .+.+.++.++|..++..|+|++|+.+|++++++        .|..+.++.++|.+|..+|++++|+..|++++++.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            355778899999999999999999999999999        88889999999999999999999999999999997664 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                       .......+.++..+|.++..+|++++|+.+|++++...
T Consensus        76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence             33445677899999999999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.39  E-value=5.7e-13  Score=118.80  Aligned_cols=107  Identities=10%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ...|....+++.+|.+++..|++++|+.+|++++.+        .|....+|..+|.+|..+|++++|+.+|++++.+  
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            567888999999999999999999999999999999        8888999999999999999999999999999999  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                             .|..+.+++++|.+|..+|++++|+..|++++.+.++
T Consensus       100 -------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          100 -------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             -------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                   3445678999999999999999999999999998543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.38  E-value=2.1e-12  Score=115.07  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .|....+++.+|.++...|++++|+.+|++++.+         .|....+|.++|.+|..+|++++|+..|++++.+.+.
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            8999999999999999999999999999999999         4556788999999999999999999999999999776


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+       .+++++|.+|..+|++++|+.+|++++.+
T Consensus       103 ~~-------~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          103 DY-------TPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             CC-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Cc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            52       58999999999999999999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.38  E-value=5.2e-12  Score=140.15  Aligned_cols=157  Identities=12%  Similarity=0.039  Sum_probs=124.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (712)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (712)
                      .|++++|+.+|+++++..+..        ..++..+|.++...|++++|+.+|++++      ...+....++..+|.+|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~lg~~~   67 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD--------FVAWLMLADAELGMGDTTAGEMAVQRGL------ALHPGHPEAVARLGRVR   67 (568)
T ss_dssp             -------------------CC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHH------TTSTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHH
Confidence            478999999999999886543        3479999999999999999999999998      34566688999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005139          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (712)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (712)
                      ..+|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++++         .+....++..
T Consensus        68 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~  130 (568)
T 2vsy_A           68 WTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---------LPEEPYITAQ  130 (568)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHH
Confidence            9999999999999999998        7777899999999999999999999999999999         3345678999


Q ss_pred             HHHHHHHc---ccHHHHHHHHHHHHHHHHhC
Q 005139          523 VSSIYESM---NELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       523 la~~~~~~---g~~~~A~~~~~~al~~~~~~  550 (712)
                      +|.++...   |++++|+..++++++..+..
T Consensus       131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            99999999   99999999999999986654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.35  E-value=1.9e-11  Score=128.30  Aligned_cols=123  Identities=10%  Similarity=-0.072  Sum_probs=115.7

Q ss_pred             HHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139          276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY  355 (712)
Q Consensus       276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  355 (712)
                      ...|+|++|+.++++++++....++++|+. .+.++.+||.+|..+|+|++|+.++++++++.++.+|.++|.++..+++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            356899999999999999999999999997 5778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005139          356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG  399 (712)
Q Consensus       356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la  399 (712)
                      ||.+|..+|++++|+.+|++|+++.....+++++....+..+|.
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            99999999999999999999999999999999998887766553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.35  E-value=3e-12  Score=131.51  Aligned_cols=161  Identities=12%  Similarity=0.072  Sum_probs=133.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------ChhHHH
Q 005139          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ---------DAEVAS  433 (712)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~  433 (712)
                      ++++++|+..+++++...+        ..+.++..+|.++...|++++|+.+|++++.+......         .+....
T Consensus       126 L~~~~~A~~~~~~a~~~~p--------~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL--------EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            4566777777777776553        33568999999999999999999999999976533211         123368


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ++.++|.+|..+|++++|+.+|++++.+        .|....+++.+|.+|..+|++++|+.+|++++++         .
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~  260 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------Y  260 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------C
Confidence            8999999999999999999999999999        7888899999999999999999999999999999         3


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHH
Q 005139          514 EEIASGLTDVSSIYESMNELEQA-IKLLQKALKIYN  548 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~  548 (712)
                      |....++..++.++..+|++++| ...|.+++....
T Consensus       261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44567899999999999999999 557777766543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.34  E-value=3.8e-11  Score=126.45  Aligned_cols=132  Identities=14%  Similarity=0.053  Sum_probs=123.7

Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (712)
                      ..-+..+|+|++|+.++++++++....++++|+. .+.++.+||.+|..+|+|++|+.++++++.+.+..+|.++|..+.
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3446678999999999999999999999999987 577899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET  404 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~  404 (712)
                      .+++||.+|..+|++++|+.++++|+++.....+++++....++.+|+.+...
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.34  E-value=6e-12  Score=129.23  Aligned_cols=164  Identities=12%  Similarity=0.075  Sum_probs=135.2

Q ss_pred             ccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHH
Q 005139          199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIA  272 (712)
Q Consensus       199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~l~~la  272 (712)
                      .-+.+..|++.+......+|..+..+..+|..++..|+ +++|+.+|++|+.+........      ..+..+.++.++|
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence            34566677766666667788999999999999999997 9999999999999863210000      0123368899999


Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (712)
                      .+|..+|++++|+.+|++++++.     +.++    .+++.+|.+|..+|++++|+.+|++++++        +|....+
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a  266 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELD-----SNNE----KGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAA  266 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHH
Confidence            99999999999999999999986     4443    35999999999999999999999999999        6777889


Q ss_pred             HHHHHHHHHHhCCHHHH-HHHHHHHHHHH
Q 005139          353 CRYLAEAHVQALQFSEA-QKFCQMALDIH  380 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A-~~~~~~al~~~  380 (712)
                      +..++.++...|++++| ...|.+++...
T Consensus       267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          267 KTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999 55777776554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=4e-11  Score=104.24  Aligned_cols=131  Identities=27%  Similarity=0.448  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      .+++.+|.++...|++++|+.++++++..        .+....++..+|.++...|++++|+.++++++...        
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence            45778899999999999999999999987        56667889999999999999999999999999883        


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                       +....++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|..++++++..
T Consensus        66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence             2335678899999999999999999999999875432       357888999999999999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.33  E-value=6.6e-11  Score=107.43  Aligned_cols=141  Identities=13%  Similarity=0.113  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      ..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+.     
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----   77 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            34677889999999999999999999999998        67778899999999999999999999999999983     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                          +....++..+|.++...|++++|+.+|++++.+.+..     .....+..++..+...|++++|+.++.++..++.
T Consensus        78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence                3346789999999999999999999999999885443     2223335566668889999999999999988876


Q ss_pred             HhC
Q 005139          590 AIG  592 (712)
Q Consensus       590 ~~~  592 (712)
                      ...
T Consensus       149 ~~~  151 (166)
T 1a17_A          149 SLD  151 (166)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            644

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.33  E-value=2e-11  Score=106.21  Aligned_cols=132  Identities=27%  Similarity=0.367  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      +++.+|.++...|++++|+.++++++..      .+....++..+|.++...|++++|+.++++++..        .|..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~   68 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRS   68 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCc
Confidence            5788999999999999999999998753      2334667889999999999999999999999987        5666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (712)
                      ..++..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++...+
T Consensus        69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            7789999999999999999999999999883         22356788999999999999999999999987643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.32  E-value=8e-12  Score=111.45  Aligned_cols=108  Identities=11%  Similarity=0.029  Sum_probs=98.8

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ...|....+++.+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+.+|++++.+  
T Consensus        15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--   84 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--   84 (148)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            567888899999999999999999999999999998        7888899999999999999999999999999999  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                             .|....+++.+|.+|...|++++|+.+|++++.+.+..
T Consensus        85 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           85 -------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             -------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             -------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence                   34446779999999999999999999999999998754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=5e-11  Score=102.95  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      ..+..+..+|..++..|++++|+.+|++++.+        .|....++..+|.++...|++++|+..|++++.+      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34677899999999999999999999999998        7888899999999999999999999999999999      


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY  569 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  569 (712)
                         .|....++..+|.++...|++++|+..|++++.+.+.. +..+....++..++.+..
T Consensus        68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV-NNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc-CCchhHHHHHHHHHHHHH
Confidence               34457889999999999999999999999999998654 222333345555555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.31  E-value=1.8e-11  Score=116.56  Aligned_cols=141  Identities=18%  Similarity=0.177  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +..++.+|.++...|++++|+.+|++++      ..   ...+++.+|.+|...|++++|+.+|++++.+        .|
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~   68 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   68 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence            4467889999999999999999999884      11   3578999999999999999999999999998        77


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (712)
                      ....++..+|.+|...|++++|+.+|++++.+.....       .....+....++..+|.++...|++++|+.+|++++
T Consensus        69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            7789999999999999999999999999999754310       000234567899999999999999999999999999


Q ss_pred             HHHHh
Q 005139          545 KIYND  549 (712)
Q Consensus       545 ~~~~~  549 (712)
                      .+.+.
T Consensus       149 ~~~p~  153 (213)
T 1hh8_A          149 SMKSE  153 (213)
T ss_dssp             TTCCS
T ss_pred             HcCcc
Confidence            87543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.31  E-value=6.9e-11  Score=107.32  Aligned_cols=140  Identities=15%  Similarity=0.034  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN  469 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  469 (712)
                      ..+..+..+|.++...|++++|+.+|.+++..      .+....++..+|.++...|++++|+.++++++.+        
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            34567899999999999999999999999854      3444778999999999999999999999999998        


Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .|....++..+|.++...|++++|+.+|++++.+...      .+ ....+..++..+...|++++|+.++.++..+...
T Consensus        77 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A           77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH------DK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            6777889999999999999999999999999998432      22 1233355666688999999999999999888766


Q ss_pred             C
Q 005139          550 A  550 (712)
Q Consensus       550 ~  550 (712)
                      .
T Consensus       150 ~  150 (166)
T 1a17_A          150 L  150 (166)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.30  E-value=8e-11  Score=103.50  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG----ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .+..+.++|..++..|+|++|+..|++++++......    ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4567789999999999999999999999999443100    001234569999999999999999999999999999554


Q ss_pred             CCCCCCChhHHHHH----HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 005139          507 PVPGVPPEEIASGL----TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI  560 (712)
Q Consensus       507 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  560 (712)
                      .  +.-.|....+|    +++|.++..+|++++|+..|++++++.+...+....+..+
T Consensus        90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4  33355677888    9999999999999999999999999999886666555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.30  E-value=1.9e-10  Score=115.80  Aligned_cols=232  Identities=11%  Similarity=0.034  Sum_probs=188.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKP  507 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  507 (712)
                      +....++..+..+....+..++|+.++.+++.+        +|....+|+..+.++...| .+++++.++++++..    
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence            344555666666666777778999999999999        8999999999999999999 599999999999987    


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--------HH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESM-N-ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--------DS  577 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A  577 (712)
                           .|....+|...+.++... + ++++++.++.+++...++.       ..++...+.++...|.++        ++
T Consensus       119 -----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          119 -----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             -----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence                 444578899999999988 7 8899999999988765544       468888888888888887        89


Q ss_pred             HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 005139          578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAG  650 (712)
Q Consensus       578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~  650 (712)
                      ++++.++++.        .+....+|...+.++...+.       ++++++++.+++.+        +|....++..+..
T Consensus       187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~  250 (349)
T 3q7a_A          187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG  250 (349)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            9999999885        22234789999999998887       79999999999999        9999999999999


Q ss_pred             HHHHccch---------------------------hhhCC------CChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005139          651 TYDAIGRE---------------------------EKLGT------ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL  697 (712)
Q Consensus       651 ~~~~~g~~---------------------------~~l~~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l  697 (712)
                      ++...|+.                           ..+..      ..+....++.-|+.+|...|+.++|. +.++.+.
T Consensus       251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~  329 (349)
T 3q7a_A          251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS  329 (349)
T ss_dssp             HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence            99876641                           00111      12456778999999999999999999 9999987


Q ss_pred             H-hcc
Q 005139          698 D-ANS  701 (712)
Q Consensus       698 ~-~~p  701 (712)
                      + .+|
T Consensus       330 ~~~dp  334 (349)
T 3q7a_A          330 SEYDQ  334 (349)
T ss_dssp             HTTCG
T ss_pred             hhhCh
Confidence            4 344

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.29  E-value=7.3e-12  Score=125.11  Aligned_cols=195  Identities=12%  Similarity=0.036  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..+..+|..++..|+|++|+.+|++++.+.     +.++    .++..+|.+|...|++++|+..|++++++       
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            5678889999999999999999999999885     4443    35899999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA  424 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  424 (712)
                       +|....+++.+|.++...|++++|+.+|++++.+.+.........   ++..+  .      ..++..+.....   ..
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~---~~~~~--~------~~~~~~~~~~~~---~~  132 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD---IPSAL--R------IAKKKRWNSIEE---RR  132 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH---HHHHH--H------HHHHHHHHHHHH---TC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH---HHHHH--H------HHHHHHHHHHHH---HH
Confidence             678889999999999999999999999999999998764321110   11111  1      111111111111   11


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 005139          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRI  503 (712)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  503 (712)
                      ....+..   ...++.++  .|++++|+..++++++.        .|........++.++... +.+++|..+|.++.+.
T Consensus       133 ~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          133 IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            2223333   33344443  69999999999999887        666667777777777766 7788899988887653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.29  E-value=9.6e-10  Score=110.22  Aligned_cols=224  Identities=9%  Similarity=-0.054  Sum_probs=180.4

Q ss_pred             HHHcCCHH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhcCCC
Q 005139          318 YAMLGQLE-NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ----------FSEAQKFCQMALDIHKDNGSP  386 (712)
Q Consensus       318 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~  386 (712)
                      ....|.+. +|+.++.+++.+        +|....+|+..+.++...+.          +++++.++..++...++..  
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny--  108 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--  108 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--
T ss_pred             HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--
Confidence            34567665 789999999988        78888999999998887776          6889999999988776653  


Q ss_pred             CCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 005139          387 ASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFK  463 (712)
Q Consensus       387 ~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  463 (712)
                            .+|...+.++...+  .+++++.++.+++.      .++....++...+.+....|. +++++.++.++++.  
T Consensus       109 ------~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--  174 (331)
T 3dss_A          109 ------GTWHHRCWLLSRLPEPNWARELELCARFLE------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  174 (331)
T ss_dssp             ------HHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             ------HHHHHHHHHHhccCcccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence                  47899999999999  49999999999984      466777899999999999999 69999999999998  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRT--------------GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES  529 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  529 (712)
                            +|....+|..++.++...              +.++++++++.+++.+         .|....+|+.+..++..
T Consensus       175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---------~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---------DPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHS
T ss_pred             ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHh
Confidence                  899999999999999887              5689999999999998         45556777766666655


Q ss_pred             c-----------ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH
Q 005139          530 M-----------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY---MLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       530 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~  587 (712)
                      .           +.++++++++.+++++.++.       ..++..++.+..   ..|..++...++.+.+++
T Consensus       240 ~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-------~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          240 GSGRCELSVEKSTVLQSELESCKELQELEPEN-------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCccccchHHHHHHHHHHHHHHHHHhhCccc-------chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            5           56889999999999887654       233433333322   357778888888888876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.27  E-value=2e-09  Score=107.97  Aligned_cols=239  Identities=11%  Similarity=-0.017  Sum_probs=183.8

Q ss_pred             HHhCCHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCCh
Q 005139          361 VQALQFS-EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD----------HEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       361 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ...|.+. +|+.++.+++.+.|..        ..+++..+.++...+.          +++++.++..++.      .+|
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~--------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------~~P  105 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDF--------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------VNP  105 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTC--------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HCT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchh--------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------hCC
Confidence            3456665 7999999999887655        3467788888877665          6788888888874      466


Q ss_pred             hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc
Q 005139          430 EVASVDCSIGDTYLSLSR--YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYEK  506 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  506 (712)
                      ....+++..+.++...++  +++++.++.+++++        +|.+..+|...+.+....|. ++++++++.+++..   
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---  174 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---  174 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            677899999999999994  89999999999998        89999999999999999999 69999999999998   


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc-
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESM--------------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML-  571 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-  571 (712)
                            +|....+|..++.++...              +.++++++++.+++.+.|..       ..+|+.+..++... 
T Consensus       175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-------~SaW~Y~r~ll~~~~  241 (331)
T 3dss_A          175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-------QSAWFYHRWLLGAGS  241 (331)
T ss_dssp             ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHSSS
T ss_pred             ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcc
Confidence                  455678899999998877              67899999999999987665       34665555555544 


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          572 ----------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV---QRYSINEAVELFEEARSILEQECGPYH  638 (712)
Q Consensus       572 ----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (712)
                                +.++++++++.+++++.       |. ...++..++.+..   ..|..++...++.+.+++        +
T Consensus       242 ~~~~~~~~~~~~l~~el~~~~elle~~-------pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------D  305 (331)
T 3dss_A          242 GRCELSVEKSTVLQSELESCKELQELE-------PE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------D  305 (331)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------C
T ss_pred             CccccchHHHHHHHHHHHHHHHHHhhC-------cc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------C
Confidence                      34677777777777752       21 1233333333222   357788999999999999        9


Q ss_pred             hhhHHHHHHHHHHHH
Q 005139          639 PDTLGVYSNLAGTYD  653 (712)
Q Consensus       639 p~~~~~~~~La~~~~  653 (712)
                      |....-|..+..-+.
T Consensus       306 p~r~~~y~d~~~~~~  320 (331)
T 3dss_A          306 PMRAAYLDDLRSKFL  320 (331)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHH
Confidence            988887777765443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1e-10  Score=101.00  Aligned_cols=122  Identities=14%  Similarity=0.042  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      .+..+..+|..+...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+..|++++.+.       
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------   68 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------   68 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence            46789999999999999999999999999986654       4689999999999999999999999999871       


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  654 (712)
                       +....++..+|.++..+|++++|+..|++++.+......  .|....++..++.+...
T Consensus        69 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           69 -PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCC--chhHHHHHHHHHHHHHh
Confidence             223578999999999999999999999999999322211  27777888888877654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.27  E-value=1.9e-11  Score=115.15  Aligned_cols=158  Identities=13%  Similarity=0.019  Sum_probs=115.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh----
Q 005139          355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE----  430 (712)
Q Consensus       355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----  430 (712)
                      ..+......|+++.|.+.+.......        +..+..+..+|.++...|++++|+.+|.+++...........    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEK--------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             -------------CCCSGGGCCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence            34455556677777777666544332        233557888899999999999999999988864433221111    


Q ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          431 ------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       431 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                            ...++.++|.+|..+|++++|+.++++++.+        .|....+++.+|.+|..+|++++|+.+|++++.+ 
T Consensus        81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-  151 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence                  1478999999999999999999999999998        7777899999999999999999999999999999 


Q ss_pred             hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005139          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (712)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (712)
                              .|....++..++.++...++..++.
T Consensus       152 --------~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          152 --------NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             --------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             --------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                    3445678899999999998888776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.27  E-value=4.6e-09  Score=116.56  Aligned_cols=408  Identities=9%  Similarity=-0.073  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHH
Q 005139          239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY  318 (712)
Q Consensus       239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~  318 (712)
                      .+.+..+++++...         |.....+..+.......+.++.+...|++++...     |...    ..|...+..-
T Consensus        49 ~d~i~~lE~~l~~n---------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~~----~lW~~Yi~~E  110 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQ---------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLMA----NIWCMRLSLE  110 (679)
T ss_dssp             SCHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHH
Confidence            44455566666542         3346677778888888999999999999999887     3332    2477777777


Q ss_pred             HHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHh-cCCC
Q 005139          319 AMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALDIHKD-NGSP  386 (712)
Q Consensus       319 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~  386 (712)
                      ...++   ++.+..+|++++....     .+| ....|..........++.        +.....|++|+..... ..  
T Consensus       111 ~~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~--  182 (679)
T 4e6h_A          111 FDKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP--  182 (679)
T ss_dssp             HTC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--
T ss_pred             HhhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--
Confidence            78888   9999999999988620     012 223555444444444443        3344677777765533 22  


Q ss_pred             CCHHHHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH---HHHHH----------HHHHcCC
Q 005139          387 ASLEEAADRRLMGL------ICETKGDHEAALEHLVLASMTMIANDQDAEVASVD---CSIGD----------TYLSLSR  447 (712)
Q Consensus       387 ~~~~~a~~~~~la~------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~la~----------~~~~~g~  447 (712)
                      .....-..|..+-.      -+..+++.+.+..+|.+++.+    +.. ....++   ...-.          +-....+
T Consensus       183 ~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~  257 (679)
T 4e6h_A          183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGELSAQ  257 (679)
T ss_dssp             SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHhhHH
Confidence            22222222222111      012345678888888888731    111 111111   11110          0011223


Q ss_pred             HHHHHHHHHHHHHHHHHhcC--C----------------CCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH
Q 005139          448 YDEAGFAYQKALTAFKTNKG--E----------------NHPAVASVFVRLADMYNRTG-------KLRESKSYCENALR  502 (712)
Q Consensus       448 ~~~A~~~~~~al~~~~~~~~--~----------------~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~  502 (712)
                      |+.|...+.+.-.+...+..  +                ........|......-...+       ..+.....|++++.
T Consensus       258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~  337 (679)
T 4e6h_A          258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ  337 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence            44444444433222211110  0                01123344444443322221       13445678999998


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (712)
                      .+         |....+|...+..+...|+.++|. ..|++|+..++..       ..++..++.+....|++++|..+|
T Consensus       338 ~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR~iy  401 (679)
T 4e6h_A          338 HV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIETTI  401 (679)
T ss_dssp             HT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence            84         345778999999999999999997 9999999876543       346778899999999999999999


Q ss_pred             HHHHHHHHHh-------CCCC-------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005139          582 KNAISKLRAI-------GERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN  647 (712)
Q Consensus       582 ~~al~~~~~~-------~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  647 (712)
                      ++++......       .+..       ......+|...+.+..+.|+.+.|...|.+|++..       .+....++..
T Consensus       402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~  474 (679)
T 4e6h_A          402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLE  474 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHH
T ss_pred             HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHH
Confidence            9999864211       0100       01244578888888889999999999999998741       1112344555


Q ss_pred             HHHHHHHccc--------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139          648 LAGTYDAIGR--------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS  701 (712)
Q Consensus       648 La~~~~~~g~--------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p  701 (712)
                      .|.+....++        ++......|+....+...+.+....|+.+.|. ..|+.++...|
T Consensus       475 ~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~  535 (679)
T 4e6h_A          475 NAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence            6666555443        23333446666777788888899999999999 99999998876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.27  E-value=1.4e-10  Score=110.37  Aligned_cols=136  Identities=15%  Similarity=0.126  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..++.+|.++...|++++|+..|++++..        .    ..+++.+|.+|...|++++|+.+|++++.+       
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQDP--------H----SRICFNIGCMYTILKNMTEAEKAFTRSINR-------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSSC--------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcCC--------C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            456778999999999999999999998621        2    236999999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS--------PASLEEAADRRLMGLICETKGDHEAALEHLV  416 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~  416 (712)
                       +|....++..+|.++...|++++|+.+|++++.+.+....        ...+....++..+|.++...|++++|+.+|+
T Consensus        67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence             5777889999999999999999999999999997765430        0112234578999999999999999999999


Q ss_pred             HHHH
Q 005139          417 LASM  420 (712)
Q Consensus       417 ~al~  420 (712)
                      +++.
T Consensus       146 ~al~  149 (213)
T 1hh8_A          146 LATS  149 (213)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.26  E-value=4.1e-11  Score=106.82  Aligned_cols=113  Identities=8%  Similarity=0.007  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139          452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                      ...|++++.+        .|....+++.+|.++...|++++|+.+|++++.+         .|....++..+|.++...|
T Consensus         7 ~~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g   69 (148)
T 2vgx_A            7 GGTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---------DHYDSRFFLGLGACRQAMG   69 (148)
T ss_dssp             CCSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CcccHHHHHHHHHHHHHHh
Confidence            3456677766        8999999999999999999999999999999998         4445778999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      ++++|+.+|++++.+.+..       ..+++.+|.+|...|++++|+.+|++++.+.
T Consensus        70 ~~~~A~~~~~~al~l~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           70 QYDLAIHSYSYGAVMDIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             CHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            9999999999999987655       2588999999999999999999999999874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.26  E-value=2.9e-11  Score=113.89  Aligned_cols=155  Identities=15%  Similarity=0.109  Sum_probs=117.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc-
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-  556 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  556 (712)
                      ...+......|+++.|.+.+......         .+..+..+..+|.++...|++++|+.+|++++.+.+........ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   78 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI   78 (198)
T ss_dssp             --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence            34556666778888887777665544         34467889999999999999999999999999987664221111 


Q ss_pred             --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          557 --------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       557 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                              ...++..+|.+|...|++++|+.++++++.+.        +....+++.+|.+|..+|++++|+.+|++++.
T Consensus        79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                    13688999999999999999999999999861        22357899999999999999999999999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          629 ILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       629 ~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      +        +|+...++..++.++..+++
T Consensus       151 ~--------~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          151 L--------NPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHHH
T ss_pred             H--------CCCcHHHHHHHHHHHHHHHH
Confidence            9        88888899999999888876

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=6.7e-11  Score=104.64  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=97.7

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ...|.....++.+|.+++..|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+  
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   81 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--   81 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            457788889999999999999999999999999998        7888899999999999999999999999999998  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                             .|....+++.+|.+|...|++++|+.+|++++.+.+..
T Consensus        82 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           82 -------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             -------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                   33446678999999999999999999999999998865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.25  E-value=3.3e-11  Score=120.31  Aligned_cols=170  Identities=16%  Similarity=0.165  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      +..+..+|..++..|++++|+.+|++++..        .|....++.++|.+|..+|++++|+..|++++.+        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            455667777777777777777777777776        5666677777777777777777777777777765        


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHH------------------------HHHHHHHH
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG------------------------IEAQMGVM  567 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------~~~~la~~  567 (712)
                       .|....+++.+|.+|..+|++++|+.+|++++.+.+...........                        +...++.+
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l  146 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL  146 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence             33345667777777777777777777777777777654221111111                        11122222


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 005139          568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARS  628 (712)
Q Consensus       568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~  628 (712)
                        ..|++++|++.++++++.       .+ ........++.++... +.+++|..+|.++.+
T Consensus       147 --~~~~~~~A~~~~~~al~~-------~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          147 --IAAERERELEECQRNHEG-------HE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             --HHHHHHHHHTTTSGGGTT-------TS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             --HHHHHHHHHHHHHhhhcc-------cc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence              256777777777777653       11 1224445555555554 667788888877755

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.24  E-value=7.9e-11  Score=103.51  Aligned_cols=113  Identities=17%  Similarity=0.057  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                      .+..+..+|..++..|+|++|+..|++|+++.+..+....     ..+.+|.++|.++..+|+|++|+..|.+|++++..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3667889999999999999999999999999987432111     23448999999999999999999999999998777


Q ss_pred             hCCCCChHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          591 IGERKSAFFGVAL----NQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       591 ~~~~~~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .+...+ ....+|    +++|.++..+|++++|+..|++++++
T Consensus        90 ~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           90 RGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            766654 456788    99999999999999999999999999

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.23  E-value=2.2e-10  Score=104.10  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      ...+..+..+..+|.+++..|++++|+.+|++++.+        .|....++..+|.+|...|++++|+.+|++++.+  
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--   74 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--   74 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence            345667888999999999999999999999999998        7777889999999999999999999999999998  


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                             .|....+++.+|.+|..+|++++|+.+|++++.+.+..
T Consensus        75 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           75 -------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence                   34457789999999999999999999999999988765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-10  Score=101.24  Aligned_cols=124  Identities=12%  Similarity=0.066  Sum_probs=108.7

Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                      ...+.....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++.+.  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--   80 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE--   80 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence            3456678899999999999999999999999999864432       4688999999999999999999999999862  


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                            +....++..+|.++...|++++|+.+|++++.+        +|....++..++.++..+|+
T Consensus        81 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 ------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                  223478999999999999999999999999998        88888999999999988764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.21  E-value=1.2e-09  Score=109.83  Aligned_cols=238  Identities=9%  Similarity=-0.047  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCCCC
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPAS  388 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~  388 (712)
                      ++..+..+....+..++|+.++.+++.+        +|....+|+..+.++...| .+++++.++..++...++..    
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----  123 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----  123 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----
Confidence            3444455555566678999999999999        7999999999999999999 59999999999998776553    


Q ss_pred             HHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHH
Q 005139          389 LEEAADRRLMGLICETK-G-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD--------EAGFAYQKA  458 (712)
Q Consensus       389 ~~~a~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a  458 (712)
                          .+++..+.++... + ++++++.++.+++      ..++....++...+.++...|.++        ++++++.++
T Consensus       124 ----~aW~hR~wlL~~l~~~~~~~EL~~~~k~L------~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~  193 (349)
T 3q7a_A          124 ----QVWHHRLLLLDRISPQDPVSEIEYIHGSL------LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM  193 (349)
T ss_dssp             ----HHHHHHHHHHHHHCCSCCHHHHHHHHHHT------SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCChHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence                4788999999888 8 8999999999987      567777889999999999988888        999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139          459 LTAFKTNKGENHPAVASVFVRLADMYNRTGK-------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                      ++.        ++.+..+|...+.++...++       ++++++++.+++.+         .|....+|+.+..++...|
T Consensus       194 I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---------~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          194 LRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---------IPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcC
Confidence            998        88899999999999999987       79999999999998         4556778888888888877


Q ss_pred             cHHH------------HHH-HHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          532 ELEQ------------AIK-LLQKALKIYNDAPGQ------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       532 ~~~~------------A~~-~~~~al~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                      +...            .+. .+......+....+.      ......++..|+.+|...|+.++|.++++...+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          257 LPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            6400            000 011122222222221      133445778899999999999999988887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=2.4e-10  Score=98.70  Aligned_cols=124  Identities=21%  Similarity=0.290  Sum_probs=98.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ..+.....+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--   76 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--   76 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--
Confidence            34556777888888888888999999888888887        56667788888888888999999999998888872  


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY  574 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  574 (712)
                             +....++..+|.++...|++++|+.+|++++.+.+..       ..++..++.++...|++
T Consensus        77 -------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           77 -------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-------ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHTTC
T ss_pred             -------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-------hHHHHHHHHHHHHHhcC
Confidence                   2336678888888989999999999998888875433       35677888888887765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.20  E-value=2e-10  Score=104.08  Aligned_cols=126  Identities=17%  Similarity=0.084  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (712)
                      ..+..+..+|..++..|+|++|+.+|.+++........            .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            44667899999999999999999999999987543211            456678999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH-HHHHHHHHHHHHccc
Q 005139          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNE  532 (712)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~  532 (712)
                      ++.+        .|....+++.+|.+|..+|++++|+..|++++.+         .|... .+...++.+....++
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------HPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHH
Confidence            9999        7888999999999999999999999999999999         33333 445556655554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-10  Score=100.26  Aligned_cols=123  Identities=18%  Similarity=0.267  Sum_probs=88.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ..+.....+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+.  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--   80 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--   80 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence            34556677777788888888888888888877776        55556777778888888888888888888877762  


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN  573 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  573 (712)
                             +....++..+|.++...|++++|+.+|++++.+.+..       ..++..++.++..+|+
T Consensus        81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-------THHHHHHHHHHHHHTC
T ss_pred             -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcC
Confidence                   2345667778888888888888888888877765543       2456667777766553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.19  E-value=4.2e-10  Score=102.24  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=97.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       261 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  340 (712)
                      .+..+..+..+|.+++..|+|++|+.+|++++.+.     +.++    .+++.+|.+|...|++++|+.+|++++.+   
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~---   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PANP----IYLSNRAAAYSASGQHEKAAEDAELATVV---   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            35678889999999999999999999999999986     4443    35999999999999999999999999999   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                           +|....+++.+|.+|...|++++|+.+|++++.+.+....
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence                 6788899999999999999999999999999999877653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.18  E-value=6.3e-10  Score=96.01  Aligned_cols=122  Identities=23%  Similarity=0.235  Sum_probs=107.2

Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG  592 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  592 (712)
                      .+.....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++...    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----   76 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICID----   76 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----
Confidence            45678889999999999999999999999999875433       4688899999999999999999999999861    


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       593 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                          +....++..+|.++...|++++|+.+|++++.+        .|....++..++.++..+|+
T Consensus        77 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           77 ----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTT
T ss_pred             ----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhc
Confidence                122478999999999999999999999999998        88888899999999988775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.17  E-value=6.5e-11  Score=126.94  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc------cchHHHHHHH
Q 005139          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ------EHALAKFAGH  311 (712)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~  311 (712)
                      +++|+..|..++...         +..+.++..+|.+++..|+|++|+..|++++.+.+.....      ........++
T Consensus       250 ~~~A~~~~~~~~~~~---------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          250 FEKAKESWEMDTKEK---------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             EECCCCGGGSCHHHH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhcCHHHH---------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            667777777776654         6678899999999999999999999999999986331100      0011124579


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (712)
Q Consensus       312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (712)
                      +++|.+|..+|+|++|+.+|++++.+        +|....+++++|.+|..+|++++|+..|++++++.+...       
T Consensus       321 ~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~-------  385 (457)
T 1kt0_A          321 LNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-------  385 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------
Confidence            99999999999999999999999998        678889999999999999999999999999999876554       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH
Q 005139          392 AADRRLMGLICETKGDHEAALEH  414 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~  414 (712)
                       .++..++.++...+++++|...
T Consensus       386 -~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          386 -AARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             3788999999999999888754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.17  E-value=8.6e-11  Score=126.00  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=126.2

Q ss_pred             ccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHH
Q 005139          199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIA  272 (712)
Q Consensus       199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~l~~la  272 (712)
                      ..++|.+|++.+.......|..+..+..+|..++..|+ |++|+..|.+|+.+........      ..+....++.++|
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence            44566677766666667788899999999999999997 9999999999999873210000      0123368899999


Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (712)
                      .+|..+|+|++|+.+|++++.+.     +.++    .+++.+|.+|..+|++++|+..|++++++        +|....+
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a  387 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLD-----SANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAA  387 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-----CccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            99999999999999999999986     4443    35999999999999999999999999998        6788889


Q ss_pred             HHHHHHHHHHhCCHHHHHHH
Q 005139          353 CRYLAEAHVQALQFSEAQKF  372 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~  372 (712)
                      +..++.++...+++++|...
T Consensus       388 ~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          388 RLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=1.5e-10  Score=102.32  Aligned_cols=112  Identities=11%  Similarity=-0.014  Sum_probs=97.4

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005139          209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL  288 (712)
Q Consensus       209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~  288 (712)
                      .+..+...+|.....++.+|..++..|+ +++|+.+|++++...         |....++..+|.+|...|++++|+.+|
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~   75 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLD---------HYDARYFLGLGACRQSLGLYEQALQSY   75 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            5566777889999999999999999997 999999999999864         444778899999999999999999999


Q ss_pred             HHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK  339 (712)
Q Consensus       289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  339 (712)
                      ++++.+.     +.++.    +++.+|.+|...|++++|+.+|++++.+..
T Consensus        76 ~~al~~~-----p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           76 SYGALMD-----INEPR----FPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHHC-----TTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-----CCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999986     55554    489999999999999999999999999853

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.16  E-value=7.8e-10  Score=100.17  Aligned_cols=127  Identities=14%  Similarity=0.130  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC-----C------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-----Q------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (712)
                      ..+..+..+|..++..|+|++|+..|.+++.+.+....     .      .+....++.++|.+|..+|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45788999999999999999999999999998654211     0      223457899999999999999999999999


Q ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHHHHHccc
Q 005139          584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGR  657 (712)
Q Consensus       584 al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~La~~~~~~g~  657 (712)
                      ++.+        .+....+++.+|.+|..+|++++|+..|++++.+        +|+.. .+...|+.+....++
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence            9997        2334589999999999999999999999999999        88887 667777777665544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.12  E-value=1.6e-09  Score=92.59  Aligned_cols=118  Identities=22%  Similarity=0.351  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      ...++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.+|++++...       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------   73 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------   73 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------
Confidence            46789999999999999999999999999875432       3578899999999999999999999998751       


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                       +....++..+|.++...|++++|+.+|++++.+        +|....++..++.++...|
T Consensus        74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence             112468889999999999999999999999998        8888899999999987765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.12  E-value=8.7e-10  Score=96.45  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=95.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139          429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV  508 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  508 (712)
                      +..+..+..+|.+++..|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.+     
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----   72 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----   72 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            345678899999999999999999999999998        7777889999999999999999999999999998     


Q ss_pred             CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                          .|....++..+|.++...|++++|+.+|++++.+.+..
T Consensus        73 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           73 ----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence                34457789999999999999999999999999999874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.11  E-value=9.1e-09  Score=101.47  Aligned_cols=249  Identities=14%  Similarity=0.064  Sum_probs=169.0

Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (712)
                      .-.+..|+|..++.-..+   +.     +..+.   .....+.++|..+|++....               ...|. ..+
T Consensus        21 kn~fy~G~yq~~i~e~~~---~~-----~~~~~---~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a   73 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEK---FS-----KVTDN---TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKV   73 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHT---SS-----CCCCH---HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHH
T ss_pred             HHHHHhhHHHHHHHHHHh---cC-----ccchH---HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHH
Confidence            445668999999985433   21     22222   23566778888889887421               11232 233


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--hh
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD--AE  430 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~  430 (712)
                      ...++..+.  ++   |+..+++.+...     ...   ...+..+|.++...|++++|+.++.+++      +..  ..
T Consensus        74 ~~~la~~~~--~~---a~~~l~~l~~~~-----~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i------~~~~~~~  134 (310)
T 3mv2_B           74 LDLYVQFLD--TK---NIEELENLLKDK-----QNS---PYELYLLATAQAILGDLDKSLETCVEGI------DNDEAEG  134 (310)
T ss_dssp             HHHHHHHHT--TT---CCHHHHHTTTTS-----CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHH------TSSCSTT
T ss_pred             HHHHHHHhc--cc---HHHHHHHHHhcC-----CCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccCCCcC
Confidence            444444432  22   666666655321     111   1245689999999999999999999886      333  37


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP------AVASVFVRLADMYNRTG--KLRESKSYCENALR  502 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~  502 (712)
                      ...++..++.++..+|+.+.|.+.++++.+.        +|      +.......-|++....|  ++.+|..+|+++..
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~  206 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ  206 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            7888899999999999999999999998877        55      33344444455577667  99999999999755


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGNYSDSYD  579 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~  579 (712)
                      .+.       .......+.+   ++..+|++++|...++.+++..+.....   .+.-+.++.+++.+...+|+  +|.+
T Consensus       207 ~~p-------~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~  274 (310)
T 3mv2_B          207 TFP-------TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED  274 (310)
T ss_dssp             TSC-------SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH
T ss_pred             hCC-------CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH
Confidence            421       1112223333   8999999999999999888887653111   13446788888888889998  8888


Q ss_pred             HHHHHHHH
Q 005139          580 SFKNAISK  587 (712)
Q Consensus       580 ~~~~al~~  587 (712)
                      +++++.+.
T Consensus       275 l~~qL~~~  282 (310)
T 3mv2_B          275 LTNQLVKL  282 (310)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            88887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.11  E-value=3.8e-10  Score=103.93  Aligned_cols=122  Identities=12%  Similarity=0.178  Sum_probs=102.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 005139          484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ  563 (712)
Q Consensus       484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  563 (712)
                      +...|++++|+.++++++..         .|....++..+|.+|...|++++|+.+|++++.+.+..       ..++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA---------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------AELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH---------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------HHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHH
Confidence            35678999999999999998         33446789999999999999999999999999987654       467889


Q ss_pred             HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          564 MGVM-YYMLGNY--SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       564 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      +|.+ +...|++  ++|+.+|++++.+.        +....++..+|.++...|++++|+.+|++++.+
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999 8899999  99999999999861        223478999999999999999999999999987

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=5e-10  Score=95.80  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      .++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++++         .
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C
Confidence            4678899999999999999999999998        8888999999999999999999999999999999         4


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      |....++..+|.++...|++++|+..|++++++.+..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            4457789999999999999999999999999876643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.10  E-value=2.9e-10  Score=104.71  Aligned_cols=122  Identities=16%  Similarity=0.220  Sum_probs=104.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139          442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT  521 (712)
Q Consensus       442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  521 (712)
                      +...|++++|+..+++++..        .|....++..+|.+|...|++++|+.+|++++.+...         ...++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~   82 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---------NAELYA   82 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---------CHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHH
Confidence            34678999999999999998        7777889999999999999999999999999999533         367789


Q ss_pred             HHHHH-HHHcccH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          522 DVSSI-YESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       522 ~la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+|.+ +...|++  ++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKALALDSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999 8899999  99999999999986543       467889999999999999999999999985

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.10  E-value=2.1e-09  Score=91.81  Aligned_cols=118  Identities=27%  Similarity=0.396  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ...++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...      
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------   73 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------   73 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence            3567788888888899999999999888887        55556788888999999999999999998888872      


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG  572 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  572 (712)
                         +....++..+|.++...|++++|+.++++++.+.+..       ..++..++.++...|
T Consensus        74 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           74 ---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHC
T ss_pred             ---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHhcc
Confidence               2235678888999999999999999998888775433       346667777766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.10  E-value=1.8e-11  Score=131.91  Aligned_cols=179  Identities=10%  Similarity=0.076  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      .+..+..+|.++...|++++|+.+|++++++        .|....++.++|.+|..+|++++|+.+|++++++       
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------   69 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------   69 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3445666777788888888888888888887        6777788888888888888888888888888877       


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH--HHHcCCHHHHHHHHH------
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM--YYMLGNYSDSYDSFK------  582 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------  582 (712)
                        .|....++.++|.+|..+|++++|+.+|++++++.+...       .++..++.+  +...|++++|+..++      
T Consensus        70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~  140 (477)
T 1wao_1           70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  140 (477)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-------THHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence              344567788888888888888888888888888755431       245556666  777788888888887      


Q ss_pred             -----HHHHHHHHhCCCCChH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHh
Q 005139          583 -----NAISKLRAIGERKSAF---FGVALNQMGLACVQRYS--INEAVELFEEARSILEQE  633 (712)
Q Consensus       583 -----~al~~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~  633 (712)
                           +++.+.....+.....   ....+..+...+...+.  ...+..++.++.+++...
T Consensus       141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e  201 (477)
T 1wao_1          141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL  201 (477)
T ss_dssp             TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred             hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence                 4444322222111111   11222333333333333  455566778887776653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.09  E-value=3.2e-11  Score=129.91  Aligned_cols=177  Identities=14%  Similarity=0.063  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      .+..+..+|.++...|++++|+.+|++++..      .|....++.++|.+|..+|++++|+.++++++++        +
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~   70 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   70 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence            3446777889999999999999999999864      4556889999999999999999999999999998        7


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH--HHHcccHHHHHHHHH-------
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI--YESMNELEQAIKLLQ-------  541 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-------  541 (712)
                      |....++.++|.+|..+|++++|+.+|++++++..         ....++..++.+  +..+|++++|+..++       
T Consensus        71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~  141 (477)
T 1wao_1           71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP---------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  141 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHh
Confidence            88889999999999999999999999999999832         234456777777  889999999999999       


Q ss_pred             ----HHHHHHHhCCCCCCc----HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH
Q 005139          542 ----KALKIYNDAPGQQST----VAGIEAQMGVMYYMLGNY--SDSYDSFKNAISKLRA  590 (712)
Q Consensus       542 ----~al~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~  590 (712)
                          +++.+.+...+....    ....+..+...+...+.+  ..+..++.++.+++..
T Consensus       142 ~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          142 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             CCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                666665554333221    122333444555554443  4455577777777664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.09  E-value=1.1e-09  Score=113.56  Aligned_cols=129  Identities=15%  Similarity=0.115  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                      .+..+|..+...|++++|+.+|++++.+....          ...+....++.++|.+|..+|++++|+.++++++++  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            57789999999999999999999999765432          145677899999999999999999999999999998  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (712)
                            .|....+++.+|.+|..+|++++|+.+|++++++         .|....++..++.++...++++++.+.
T Consensus       303 ------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---------~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  7888899999999999999999999999999999         333467788999999999988887653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.08  E-value=1.7e-09  Score=93.38  Aligned_cols=123  Identities=17%  Similarity=0.239  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP  509 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  509 (712)
                      ..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+....  
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--   71 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--   71 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--
Confidence            34677899999999999999999999999998        66678899999999999999999999999999997542  


Q ss_pred             CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005139          510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM  570 (712)
Q Consensus       510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  570 (712)
                      ....+....++..+|.++...|++++|+.+|++++.+.+.        ......++.+...
T Consensus        72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~l~~~~~~  124 (131)
T 1elr_A           72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLKKCQQAEKI  124 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHH
Confidence            2223334788999999999999999999999999986431        2344555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.07  E-value=4.7e-09  Score=90.51  Aligned_cols=124  Identities=15%  Similarity=0.177  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      .+..+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++.+...... .
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~   74 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-D   74 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-C
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-h
Confidence            46778999999999999999999999999885443       467889999999999999999999999998764322 2


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      ......++..+|.++...|++++|+.+|++++.+        .| .......++.++...+
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence            2333678999999999999999999999999997        55 3566777777766544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.05  E-value=1.4e-08  Score=100.21  Aligned_cols=252  Identities=14%  Similarity=0.057  Sum_probs=163.3

Q ss_pred             cccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005139          200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG  279 (712)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g  279 (712)
                      .|+|.+.+..........+.  .....+.+.++..|+ +...                ..+.|. ..++..++..+.  +
T Consensus        26 ~G~yq~~i~e~~~~~~~~~~--~~~~~~~Rs~iAlg~-~~~~----------------~~~~~~-~~a~~~la~~~~--~   83 (310)
T 3mv2_B           26 TGNFVQCLQEIEKFSKVTDN--TLLFYKAKTLLALGQ-YQSQ----------------DPTSKL-GKVLDLYVQFLD--T   83 (310)
T ss_dssp             TTCHHHHTHHHHTSSCCCCH--HHHHHHHHHHHHTTC-CCCC----------------CSSSTT-HHHHHHHHHHHT--T
T ss_pred             hhHHHHHHHHHHhcCccchH--HHHHHHHHHHHHcCC-CccC----------------CCCCHH-HHHHHHHHHHhc--c
Confidence            45666666433333333333  355556667777775 5421                111122 223333444432  2


Q ss_pred             CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139          280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA  359 (712)
Q Consensus       280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  359 (712)
                      .   |+..|++.+...     ...+.    .+..+|.++...|++++|+.++.+++...      ..+....++..++.+
T Consensus        84 ~---a~~~l~~l~~~~-----~~~~~----~~~~la~i~~~~g~~eeAL~~l~~~i~~~------~~~~~lea~~l~vqi  145 (310)
T 3mv2_B           84 K---NIEELENLLKDK-----QNSPY----ELYLLATAQAILGDLDKSLETCVEGIDND------EAEGTTELLLLAIEV  145 (310)
T ss_dssp             T---CCHHHHHTTTTS-----CCCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHTSS------CSTTHHHHHHHHHHH
T ss_pred             c---HHHHHHHHHhcC-----CCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCcCcHHHHHHHHHH
Confidence            2   778888776542     12221    35789999999999999999999986540      013778899999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChh--HHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAE--VASVD  435 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~--~~~~~  435 (712)
                      +...|+.+.|.+.++++.+..+....  .-....+...-+++....|  ++.+|..+|+++.      ...+.  ....+
T Consensus       146 ~L~~~r~d~A~k~l~~~~~~~~d~~~--~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~------~~~p~~~~~~lL  217 (310)
T 3mv2_B          146 ALLNNNVSTASTIFDNYTNAIEDTVS--GDNEMILNLAESYIKFATNKETATSNFYYYEELS------QTFPTWKTQLGL  217 (310)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCHHHH--HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH------TTSCSHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCccccc--cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH------HhCCCcccHHHH
Confidence            99999999999999998776541000  0011122333355566667  9999999999875      33343  23333


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      ++   ++..+|++++|...++.+++........+  .|..+.++.+++.+...+|+  +|.+++.++....
T Consensus       218 ln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          218 LN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            33   89999999999999997776632211000  25578889899999999998  8899999998883

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.05  E-value=2.2e-09  Score=93.84  Aligned_cols=101  Identities=14%  Similarity=0.019  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +..+..+|.++...|++++|+.+|.+++..      .|....++..+|.++..+|++++|+.++++++.+        .|
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p   74 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------DG   74 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------Cc
Confidence            457899999999999999999999999854      3455788999999999999999999999999998        77


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ....++..+|.++...|++++|+.+|++++.+...
T Consensus        75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            78889999999999999999999999999999655

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.04  E-value=1.1e-09  Score=93.62  Aligned_cols=100  Identities=16%  Similarity=0.014  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (712)
                      .++.+|..+...|++++|+..|++++.+.     +.++.    +++.+|.++...|++++|+..|++++++        +
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-----PEREE----AWRSLGLTQAENEKDGLAIIALNHARML--------D   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            45678999999999999999999999986     55443    5899999999999999999999999999        7


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      |....++..+|.++...|++++|+..+++++++.+..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            8888899999999999999999999999999877643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.03  E-value=4e-09  Score=89.04  Aligned_cols=114  Identities=14%  Similarity=0.167  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK  595 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  595 (712)
                      .+..+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++.+.       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   68 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------   68 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------
Confidence            35678999999999999999999999999875543       4688899999999999999999999999862       


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  652 (712)
                       +....++..+|.++...|++++|+.+|++++.+        +|....++..++.+.
T Consensus        69 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           69 -PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence             223478999999999999999999999999988        788888888888765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.03  E-value=2e-09  Score=111.56  Aligned_cols=132  Identities=18%  Similarity=0.232  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK--------GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +..+..+|..++..|++++|+..|++++++.....        ....+....++.++|.+|..+|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999655420        0016778899999999999999999999999999987


Q ss_pred             HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD  579 (712)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  579 (712)
                               .|....+++.+|.+|..+|++++|+.+|++++++.+..       ..++..++.++...++++++..
T Consensus       303 ---------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-------~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 ---------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-------KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHH
Confidence                     34457889999999999999999999999999986543       3577788888888888877754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=4e-09  Score=89.01  Aligned_cols=112  Identities=16%  Similarity=0.248  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      +..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+.       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   68 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------   68 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------
Confidence            567888999999999999999999999998        67678899999999999999999999999999983       


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                        |....++..+|.++...|++++|+.++++++.+.+..       ..++..++.+
T Consensus        69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~  115 (118)
T 1elw_A           69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-------PQLKEGLQNM  115 (118)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-------HHHHHHHHHh
Confidence              3346789999999999999999999999998765433       2355555554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.99  E-value=1.4e-08  Score=87.59  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF  598 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  598 (712)
                      .++.+|.++...|++++|+..|++++...+..    .....+++.+|.++...|++++|+.+|++++...     +....
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~   74 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDK   74 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcc
Confidence            46789999999999999999999999875432    3344688899999999999999999999999862     22233


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          599 FGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      ...+++.+|.++..+|++++|+.+|++++..
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=7.2e-09  Score=113.43  Aligned_cols=174  Identities=9%  Similarity=0.017  Sum_probs=152.4

Q ss_pred             HcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCCCC
Q 005139          444 SLSR-YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       444 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      ..|+ .++|+..+.+++.+        +|....+|+..+.++...|+          +++++.++++++..         
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------  102 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------  102 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence            3444 46789999999999        99999999999999999998          99999999999998         


Q ss_pred             ChhHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLR  589 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  589 (712)
                      .|....+|...+.++...+  ++++|++++.+++++.+..       ..+|...+.++...| .++++++++.++++.  
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence            4556889999999999999  7799999999999987665       468899999999999 899999999999874  


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          590 AIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       590 ~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                            .+....+|...+.++...              +.+++|++++.+|+.+        +|+...+|+.++.++...
T Consensus       174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred             ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence                  223347899999888875              5689999999999999        999999999999999887


Q ss_pred             cc
Q 005139          656 GR  657 (712)
Q Consensus       656 g~  657 (712)
                      ++
T Consensus       240 ~~  241 (567)
T 1dce_A          240 EP  241 (567)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=8.8e-09  Score=91.11  Aligned_cols=123  Identities=17%  Similarity=0.132  Sum_probs=101.1

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139          214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE  293 (712)
Q Consensus       214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~  293 (712)
                      ...+|..+..++.+|..++..|+ +++|+.+|++++.+.      +.++....++..+|.+|...|++++|+.+|++++.
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   93 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGD-YGGALAAYTQALGLD------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE   93 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHc------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34567888999999999999997 999999999998642      22233478899999999999999999999999998


Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH  360 (712)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  360 (712)
                      +.     +.++    .+++.+|.++...|++++|+.+|++++.+        .|....++..++.+.
T Consensus        94 ~~-----~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           94 KD-----GGDV----KALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             HT-----SCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             hC-----ccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence            75     4443    35899999999999999999999999998        455556666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.96  E-value=2.3e-08  Score=86.18  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      .++.+|.++...|++++|+..|++++..   .+..+....+++.+|.++...|++++|+.+|++++..     .++++..
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~   75 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKA   75 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCccc
Confidence            4678999999999999999999988753   3445555688999999999999999999999999998     1223333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      ..++..+|.++...|++++|+.+|++++...
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            8899999999999999999999999999984

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.96  E-value=1.2e-09  Score=112.10  Aligned_cols=132  Identities=14%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA-----------------SVFVRLADMYNRTGKLRESKS  495 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~  495 (712)
                      ..+..+|..++..|+|++|+.+|++++.+        .+...                 .++.++|.+|..+|++++|+.
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            33445555555556666666666655554        22222                 488999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCH
Q 005139          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNY  574 (712)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~  574 (712)
                      +|++++.+         .|....+++++|.+|..+|++++|+.+|++++.+.+..       ..++..++.+ ....+..
T Consensus       252 ~~~~al~~---------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-------~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          252 HCNIVLTE---------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-------KAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHHHHH---------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             HHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHH
Confidence            99999998         34457889999999999999999999999999887654       2456667776 3445677


Q ss_pred             HHHHHHHHHHHHHH
Q 005139          575 SDSYDSFKNAISKL  588 (712)
Q Consensus       575 ~~A~~~~~~al~~~  588 (712)
                      +++...|.+++...
T Consensus       316 ~~a~~~~~~~l~~~  329 (338)
T 2if4_A          316 QKQKEMYKGIFKGK  329 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHhhCCC
Confidence            88888888887753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.94  E-value=9.6e-10  Score=112.76  Aligned_cols=142  Identities=15%  Similarity=0.122  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---CC--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIAND---QD--------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (712)
                      +..+..+|..+...|++++|+.+|.+++.......   ..        .....+++++|.+|..+|+|++|+.+|++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34677899999999999999999999986421110   00        00113889999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH-HHHcccHHHHHHH
Q 005139          461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKL  539 (712)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~  539 (712)
                      +        .|....+++++|.+|..+|++++|+.+|++++++.         |....++..++.+ ....+..+++...
T Consensus       259 ~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---------p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          259 E--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---------PDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             H--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8        78888999999999999999999999999999883         3446677888888 4456678888999


Q ss_pred             HHHHHHHHHhC
Q 005139          540 LQKALKIYNDA  550 (712)
Q Consensus       540 ~~~al~~~~~~  550 (712)
                      |.+++...+..
T Consensus       322 ~~~~l~~~p~~  332 (338)
T 2if4_A          322 YKGIFKGKDEG  332 (338)
T ss_dssp             -----------
T ss_pred             HHHhhCCCCCC
Confidence            99998876654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=1.1e-08  Score=90.54  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      +..+..+|..+...|++++|+.+|++++..   ..+.+....++..+|.+|...|++++|+.++++++.+        .|
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~   96 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------DG   96 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TS
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------Cc
Confidence            567889999999999999999999999832   1222234789999999999999999999999999998        66


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY  527 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  527 (712)
                      ....++..+|.++...|++++|+.+|++++.+.         |....++..++.+.
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~  143 (148)
T 2dba_A           97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE---------PKNKVFQEALRNIS  143 (148)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------SSCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHH
Confidence            668899999999999999999999999999983         22344555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.89  E-value=8.8e-09  Score=112.75  Aligned_cols=177  Identities=11%  Similarity=0.019  Sum_probs=153.9

Q ss_pred             HcCCH-hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHhCCC
Q 005139          277 SLGQY-NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ----------LENSLMCYTTGLEVQKQVLGET  345 (712)
Q Consensus       277 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  345 (712)
                      ..|++ ++|+..+++++.+.     |++.    .+|+..+.++...|+          +++++.++.+++..        
T Consensus        40 ~~~~~~eeal~~~~~~l~~n-----P~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------  102 (567)
T 1dce_A           40 QAGELDESVLELTSQILGAN-----PDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------  102 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HcCCCCHHHHHHHHHHHHHC-----chhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------
Confidence            34554 67899999999987     5443    359999999999998          99999999999988        


Q ss_pred             ChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 005139          346 DPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-DHEAALEHLVLASMTM  422 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  422 (712)
                      +|....+|...+.++...+  ++++++.++.+++++.++.        ..+|...+.+....| .++++++++.+++   
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N--------~~aW~~R~~~l~~l~~~~~~el~~~~~~I---  171 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN--------FHCWDYRRFVAAQAAVAPAEELAFTDSLI---  171 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTCCCHHHHHHHHHTTT---
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc--------ccHHHHHHHHHHHcCCChHHHHHHHHHHH---
Confidence            7899999999999999999  7799999999999987665        348999999999999 9999999999887   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 005139          423 IANDQDAEVASVDCSIGDTYLSL--------------SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG  488 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  488 (712)
                         ..++....+|++++.++...              +.+++|++++.+|+.+        .|....+|+.++.++...+
T Consensus       172 ---~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          172 ---TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             ---TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCC
T ss_pred             ---HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCC
Confidence               56777788999999998885              5679999999999998        7888899999999999988


Q ss_pred             CHHH
Q 005139          489 KLRE  492 (712)
Q Consensus       489 ~~~~  492 (712)
                      ++++
T Consensus       241 ~~~~  244 (567)
T 1dce_A          241 PHDV  244 (567)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            8665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.86  E-value=1.9e-09  Score=90.18  Aligned_cols=103  Identities=11%  Similarity=0.031  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ...++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.+...    
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----   72 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----   72 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----
Confidence            3456778899999999999999999999988        6666788999999999999999999999999987211    


Q ss_pred             CCChhHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYN  548 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~  548 (712)
                         .....++..+|.++... |++++|+.++++++...+
T Consensus        73 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           73 ---EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             ---TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             ---cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence               01467889999999999 999999999999886543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.86  E-value=8e-09  Score=87.60  Aligned_cols=93  Identities=18%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV  523 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  523 (712)
                      .+|++++|+.+|++++++     +.+.|....++..+|.+|..+|++++|+.+|++++++         .|....++..+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l   67 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---------FPNHQALRVFY   67 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCchHHHHHH
Confidence            468999999999999986     1114888999999999999999999999999999999         34457789999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          524 SSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      |.++...|++++|+.++++++...+..
T Consensus        68 ~~~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           68 AMVLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999987644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.86  E-value=5.1e-09  Score=88.83  Aligned_cols=92  Identities=15%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005139          404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM  483 (712)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  483 (712)
                      .+|++++|+.+|++++..   ....|....++..+|.+|..+|++++|+.+|++++++        .|....++..+|.+
T Consensus         2 ~~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~   70 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMV   70 (117)
T ss_dssp             -----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHH
Confidence            468999999999999831   1115888999999999999999999999999999999        78888999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhc
Q 005139          484 YNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       484 ~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      +...|++++|+.+|++++.....
T Consensus        71 ~~~~g~~~~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           71 LYNLGRYEQGVELLLKIIAETSD   93 (117)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999998543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.83  E-value=6.6e-09  Score=91.05  Aligned_cols=90  Identities=16%  Similarity=0.230  Sum_probs=80.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcCCCCCCC
Q 005139          444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL----------RESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      +.+.|++|+..+++++++        .|..+.+|+++|.++...+++          ++|+..|++++++         .
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------d   76 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------C
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------C
Confidence            456789999999999999        899999999999999998875          5999999999999         5


Q ss_pred             hhHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhC
Q 005139          514 EEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~  550 (712)
                      |....+++++|.+|..+|           ++++|+.+|++|+++.++.
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            667889999999999885           8999999999999997654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.79  E-value=4e-09  Score=88.11  Aligned_cols=100  Identities=19%  Similarity=0.156  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +.++..+|.++...|++++|+.+|++++.+.     +..+    .++..+|.++...|++++|+.+|++++++       
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEES----KYWLMKGKALYNLERYEEAVDCYNYVINV-------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            4567789999999999999999999999875     3333    35899999999999999999999999987       


Q ss_pred             CChh--HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Q 005139          345 TDPR--VGETCRYLAEAHVQA-LQFSEAQKFCQMALDIHK  381 (712)
Q Consensus       345 ~~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~  381 (712)
                       .|.  ...++..+|.++... |++++|+.++++++...+
T Consensus        70 -~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           70 -IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             -SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             -CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence             456  678999999999999 999999999999886543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.77  E-value=4.2e-06  Score=89.98  Aligned_cols=362  Identities=9%  Similarity=0.002  Sum_probs=210.8

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005139          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (712)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~  316 (712)
                      ++..|...|++++..+         |.               |+++.+..+|++++...     + +    ..+|.....
T Consensus        10 ~i~~aR~vyer~l~~~---------P~---------------~~~e~~~~iferal~~~-----p-s----~~LW~~Y~~   55 (493)
T 2uy1_A           10 ELSSPSAIMEHARRLY---------MS---------------KDYRSLESLFGRCLKKS-----Y-N----LDLWMLYIE   55 (493)
T ss_dssp             --CCHHHHHHHHHHHH---------HT---------------TCHHHHHHHHHHHSTTC-----C-C----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHC---------CC---------------CCHHHHHHHHHHHhccC-----C-C----HHHHHHHHH
Confidence            3778888888888877         22               88999999999999854     2 1    223555555


Q ss_pred             HHHHcCC-HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139          317 TYAMLGQ-LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----QALQFSEAQKFCQMALDIHKDNGSPASLEE  391 (712)
Q Consensus       317 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  391 (712)
                      .....+. .+.....|+.++...    |. ++....+|......+.    ..++.+.+..+|++++.+ +..    ... 
T Consensus        56 f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~~~-  124 (493)
T 2uy1_A           56 YVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----SLS-  124 (493)
T ss_dssp             HHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----THH-
T ss_pred             HHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----hHH-
Confidence            5445453 345566777777652    32 3444466666555443    356788899999999873 211    111 


Q ss_pred             HHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC---------HH
Q 005139          392 AADRRLMGL-------------ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR---------YD  449 (712)
Q Consensus       392 a~~~~~la~-------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~  449 (712)
                       ..|.....             +-.....+..|...|..+.......  ..   ..+.....  +..++         ..
T Consensus       125 -~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~--s~---~~W~~y~~--~E~~~~~~~~~~~~~~  196 (493)
T 2uy1_A          125 -ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW--SV---KNAARLID--LEMENGMKLGGRPHES  196 (493)
T ss_dssp             -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SH---HHHHHHHH--HHHTCTTCCCHHHHHH
T ss_pred             -HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--cH---HHHHHHHH--HHhcCCccCcchhhHH
Confidence             11111111             1112234445555555554433221  11   12322222  22222         34


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139          450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES  529 (712)
Q Consensus       450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  529 (712)
                      .....|++++..        .|....+|...+..+...|+.+.|...|++|+.. ...     .    ..+...+... .
T Consensus       197 Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~~y~~~~-e  257 (493)
T 2uy1_A          197 RMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSLYYGLVM-D  257 (493)
T ss_dssp             HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHHHHHhhc-c
Confidence            567788998887        5666889999999999999999999999999998 432     1    1222222221 1


Q ss_pred             cccHHHHHHHHHHHHHHH---HhCCC---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139          530 MNELEQAIKLLQKALKIY---NDAPG---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL  603 (712)
Q Consensus       530 ~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  603 (712)
                      .+   +.   +++.....   ....+   .......+|...+..+.+.++.+.|...|++| .    ... ..   ..++
T Consensus       258 ~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~~~-~~---~~v~  322 (493)
T 2uy1_A          258 EE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----NEG-VG---PHVF  322 (493)
T ss_dssp             CT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----TSC-CC---HHHH
T ss_pred             hh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----CCC-CC---hHHH
Confidence            11   11   22222111   10000   01122356777788887888999999999998 2    111 11   2455


Q ss_pred             HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHH
Q 005139          604 NQMGLACVQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRL  675 (712)
Q Consensus       604 ~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~l  675 (712)
                      ...|.+....+ +++.|...|+.+++.        .|+....+...+......|+       .+.+    +.....+...
T Consensus       323 i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~  390 (493)
T 2uy1_A          323 IYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSM  390 (493)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHH
Confidence            55666666555 699999999999986        34444445556666666776       2222    2235567777


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHH
Q 005139          676 AELLKEAGRVRSRKAQSLETLLD  698 (712)
Q Consensus       676 a~~~~~~g~~~~A~~~~l~~~l~  698 (712)
                      ...-...|+.+.+. ..+++.+.
T Consensus       391 ~~fE~~~G~~~~~r-~v~~~~~~  412 (493)
T 2uy1_A          391 IEYEFMVGSMELFR-ELVDQKMD  412 (493)
T ss_dssp             HHHHHHHSCHHHHH-HHHHHHHH
T ss_pred             HHHHHHCCCHHHHH-HHHHHHHH
Confidence            77777889999888 88888875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.73  E-value=3.6e-08  Score=86.36  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             HHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCCCCh
Q 005139          528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY----------SDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                      .+.+.+++|++.+++++++.+..       +.+++++|.++...+++          ++|+..|++|+++        .+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            35678999999999999997765       57899999999998875          5999999999987        23


Q ss_pred             HHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139          598 FFGVALNQMGLACVQRY-----------SINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (712)
Q Consensus       598 ~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La  649 (712)
                      ....+++++|.+|..+|           ++++|+.+|++|+++        +|+.......+.
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~  132 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE  132 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence            45689999999999875           899999999999999        887765554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.68  E-value=1.7e-07  Score=74.80  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=72.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      ++....++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.+    
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   72 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----   72 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3456778889999999999999999999999987        6666788999999999999999999999999988    


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcc
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMN  531 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g  531 (712)
                           .|....++..+|.++...|
T Consensus        73 -----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCCHHHHHHHHHHHHhcC
Confidence                 3344677888888887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.65  E-value=2.5e-07  Score=77.90  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=76.6

Q ss_pred             hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV  361 (712)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  361 (712)
                      ++|+..|++++...     +.++.    +++.+|.+|...|++++|+.+|++++.+        +|....++..+|.++.
T Consensus         2 ~~a~~~~~~al~~~-----p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQG-----TDNML----LRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTTT-----CCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-----CCcHH----HHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence            46888999999876     44443    5899999999999999999999999998        6777889999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          362 QALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       362 ~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      ..|++++|+.+|++++.+.+....
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999877653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.65  E-value=2.6e-07  Score=73.70  Aligned_cols=85  Identities=21%  Similarity=0.340  Sum_probs=74.7

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      ....++..+|.++...|++++|+.+|++++.+.        +....++..+|.++...|++++|+.+|++++.+      
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------   72 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------   72 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            345688899999999999999999999999862        223478999999999999999999999999998      


Q ss_pred             CCChhhHHHHHHHHHHHHHcc
Q 005139          636 PYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       636 ~~~p~~~~~~~~La~~~~~~g  656 (712)
                        +|....++.++|.++..+|
T Consensus        73 --~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 --DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --CTTCHHHHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHHHhcC
Confidence              8888999999999998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.64  E-value=1.4e-08  Score=84.74  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      +..+..+|.++...|++++|+.+|++++.+        .|....++.++|.++...|++++|+.+|++++.+....   .
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~   72 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA---E   72 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST---T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---c
Confidence            567889999999999999999999999998        77778999999999999999999999999999874331   1


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                      .......++..+|.++...|+++.|+..++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            122237788899999999988777765544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.58  E-value=2.6e-07  Score=77.71  Aligned_cols=84  Identities=8%  Similarity=0.028  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139          450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES  529 (712)
Q Consensus       450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  529 (712)
                      +|+..|++++..        .|....++..+|.+|...|++++|+.+|++++.+         .|....++..+|.+|..
T Consensus         3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHH
Confidence            577888888886        6777889999999999999999999999999998         34457789999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHhC
Q 005139          530 MNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~  550 (712)
                      .|++++|+.+|++++.+.+..
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcccc
Confidence            999999999999999998764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.54  E-value=2.3e-05  Score=84.24  Aligned_cols=324  Identities=10%  Similarity=-0.040  Sum_probs=160.2

Q ss_pred             ccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----
Q 005139          201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC----  276 (712)
Q Consensus       201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~----  276 (712)
                      +++..+.+.|.......| ...++..........++..+.....|+.|+...   +......   ..+......+.    
T Consensus        28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g~d~~s~---~iW~~Yi~f~~~~~~  100 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---ENYWDSY---GLYKEYIEEEGKIED  100 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---TTCTTCH---HHHHHHHHHTSSCSS
T ss_pred             CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---CCCcccH---HHHHHHHHHHHhchh
Confidence            555555556666666667 555666666666666543566677888888754   1111222   33333333222    


Q ss_pred             HcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHH-------------------------------------------
Q 005139          277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQ-------------------------------------------  313 (712)
Q Consensus       277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  313 (712)
                      ..++.+.+..+|++++.+...     ........|..                                           
T Consensus       101 ~~~~~~~vR~iy~rAL~~P~~-----~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W  175 (493)
T 2uy1_A          101 EQTRIEKIRNGYMRALQTPMG-----SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNA  175 (493)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCT-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHH
T ss_pred             hhHHHHHHHHHHHHHHhChhh-----hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            346788899999999875211     00000000000                                           


Q ss_pred             HHHHHHHcCC---------HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005139          314 LGDTYAMLGQ---------LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (712)
Q Consensus       314 lg~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (712)
                      ...+-+..++         .......|++++..        .|....+|...+..+...|+.+.|...|++|+.. +...
T Consensus       176 ~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          176 ARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence            0000011111         12233445554443        2344556666666667777777777777777766 3321


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND-------QDAEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (712)
Q Consensus       385 ~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (712)
                          .    .+...+..    .+.++.   +...........       .......++...+......++.+.|...|.+
T Consensus       247 ----~----l~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~  311 (493)
T 2uy1_A          247 ----F----LSLYYGLV----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE  311 (493)
T ss_dssp             ----H----HHHHHHHH----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ----H----HHHHHHhh----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                1    11111111    011111   111111100000       1112234455555555566667777777777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (712)
                      | ..        .+....++...|.+-...+ +.+.|..+|+.+++.+..      .+   ..+...+......|+.+.|
T Consensus       312 A-~~--------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~------~~---~~~~~yid~e~~~~~~~~a  373 (493)
T 2uy1_A          312 L-GN--------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD------ST---LLKEEFFLFLLRIGDEENA  373 (493)
T ss_dssp             H-TT--------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT------CH---HHHHHHHHHHHHHTCHHHH
T ss_pred             h-hC--------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC------CH---HHHHHHHHHHHHcCCHHHH
Confidence            6 21        1112334555555555444 577777777777776322      22   2234455566667777777


Q ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                      ..+|+++..           ...++......-...|+.+.+...+++++..++
T Consensus       374 R~l~er~~k-----------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          374 RALFKRLEK-----------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK  415 (493)
T ss_dssp             HHHHHHSCC-----------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence            777777510           123444555555566777777777777776554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.52  E-value=4.3e-07  Score=75.56  Aligned_cols=84  Identities=12%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (712)
                      +..+..+|.++...|++++|+.+|++++.+.        +....++..+|.++..+|++++|+.+|++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            4578899999999999999999999999861        223578999999999999999999999999988        


Q ss_pred             Chhh------HHHHHHHHHHHHHccc
Q 005139          638 HPDT------LGVYSNLAGTYDAIGR  657 (712)
Q Consensus       638 ~p~~------~~~~~~La~~~~~~g~  657 (712)
                      +|+.      ..++..++.++..+|+
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            6766      7778888888887776

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=7e-07  Score=77.93  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                      +++++|+.+|+++.+.      +  ++.   +.  ||.+|...+..++|+.+|+++.+.     +.    ..+++.||.+
T Consensus         9 ~d~~~A~~~~~~aa~~------g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-----g~----~~a~~~Lg~~   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL------N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL-----NS----GNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHT------T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC------C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-----CC----HHHHHHHHHH
Confidence            4688999999999876      2  111   22  999999999999999999999875     21    4688999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139          568 YYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI  629 (712)
Q Consensus       568 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  629 (712)
                      |..    .+++++|+.+|++|.+.       .   ...+++.||.+|..    .+++++|+.+|++|.+.
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999    89999999999999873       1   24789999999999    89999999999999886

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.44  E-value=1.4e-06  Score=71.20  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                      .+++.+|.+|...|++++|+.+|++++++        +|....++..+|.+|...|++++|+..|++++.+.+....
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            35999999999999999999999999998        6777889999999999999999999999999999877654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.44  E-value=7.8e-07  Score=72.67  Aligned_cols=72  Identities=11%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      .|....+++.+|.+|...|++++|+.+|++++++         .|....++..+|.+|...|++++|+..|++++.+.+.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET---------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4666789999999999999999999999999999         3445668999999999999999999999999999776


Q ss_pred             C
Q 005139          550 A  550 (712)
Q Consensus       550 ~  550 (712)
                      .
T Consensus        74 ~   74 (100)
T 3ma5_A           74 E   74 (100)
T ss_dssp             H
T ss_pred             C
Confidence            5

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.42  E-value=1.8e-06  Score=75.32  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005139          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (712)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~  316 (712)
                      ++++|+.+|+++.+.      +.+.     +.  ||.+|...+.+++|+.+|+++.+..           ...+++.||.
T Consensus        10 d~~~A~~~~~~aa~~------g~~~-----a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----------~~~a~~~Lg~   65 (138)
T 1klx_A           10 DLKKAIQYYVKACEL------NEMF-----GC--LSLVSNSQINKQKLFQYLSKACELN-----------SGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHT------TCTT-----HH--HHHHTCTTSCHHHHHHHHHHHHHTT-----------CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC------CCHh-----hh--HHHHHHcCCCHHHHHHHHHHHHcCC-----------CHHHHHHHHH
Confidence            388999999999864      2221     22  8999999999999999999998752           2345899999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139          317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDI  379 (712)
Q Consensus       317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  379 (712)
                      +|..    .+++++|+.+|+++.+.          ....++++||.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999    89999999999999875          345789999999999    89999999999999875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.37  E-value=0.0003  Score=71.83  Aligned_cols=212  Identities=13%  Similarity=0.099  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      .+...+|.+|...|++++-..++......+....   ....+.....+-..+.. -+..+.-++++.++++.....    
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence            3456778888888888887777776655433321   23334444444444433 345566677777777776541    


Q ss_pred             CChhHHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          512 PPEEIAS--GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       512 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                       ......  .-..||.+|+..|+|.+|.+.+.+.+..+... ++...+..++.....+|...+++.++..++.+|.....
T Consensus        93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence             111222  34589999999999999999999999988775 45567778888999999999999999999999998876


Q ss_pred             HhCCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          590 AIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       590 ~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                      .+. .++...+.....-|.++. ..++|.+|..+|-++..-+...   ..|....++..++.+-...++
T Consensus       171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            653 345566777788889999 8999999999999987655422   245444555555555544444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.37  E-value=1.2e-06  Score=71.24  Aligned_cols=90  Identities=9%  Similarity=0.138  Sum_probs=74.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      +.+|.++...|++++|+..|++++..        .|.... ++..+|.+|...|++++|+.+|++++.+...        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--------   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Confidence            46788999999999999999999998        777777 9999999999999999999999999998322        


Q ss_pred             hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                       ...++..        +.+.+|+..|+++....+..
T Consensus        68 -~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           68 -SPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -STHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             -cHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence             2233322        67788888888888877654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.29  E-value=0.00022  Score=72.83  Aligned_cols=211  Identities=15%  Similarity=0.103  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA  472 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  472 (712)
                      +...||.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+.++++.++..    ...
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~   95 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT   95 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence            577899999999999999998876543322211 12233334444444433 355666777888888876643    233


Q ss_pred             HHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          473 VAS--VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       473 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                      ...  .-..||.+|+..|+|.+|...+.+.++-+.+.   ++......++.....+|...+++.++...+.+|.......
T Consensus        96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai  172 (394)
T 3txn_A           96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI  172 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence            333  44589999999999999999999999988773   3456778889999999999999999999999999988776


Q ss_pred             CCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC
Q 005139          551 PGQQSTVAGIEAQMGVMYY-MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (712)
Q Consensus       551 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~  615 (712)
                      +.++...+.+...-|.++. ..++|..|..+|-++..-+...+   .+....++..++.+-...++
T Consensus       173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence            4444466777778888999 89999999999999876554332   23333444555555555555

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.23  E-value=2.7e-06  Score=69.04  Aligned_cols=92  Identities=14%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139          269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR  348 (712)
Q Consensus       269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  348 (712)
                      +.+|.++...|++++|+..|+++++..     +.++.   .+++.+|.+|...|++++|+.+|++++.+        +|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE-----PVGKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-----SSTHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            457889999999999999999999875     44432   15899999999999999999999999988        455


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005139          349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG  384 (712)
Q Consensus       349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  384 (712)
                      ...++..        +.+.+++..|++++...+...
T Consensus        68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           68 SPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             STHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             cHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            5444432        567778888888777766543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.18  E-value=2.1e-05  Score=64.50  Aligned_cols=83  Identities=16%  Similarity=0.120  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (712)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (712)
                      .-++.+|..++..|+|..|+.+|++|+......... ......++..||.++.++|++++|+.++++++.+        .
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence            456789999999999999999999999986543211 2335688999999999999999999999999998        8


Q ss_pred             hhhHHHHHHHHH
Q 005139          639 PDTLGVYSNLAG  650 (712)
Q Consensus       639 p~~~~~~~~La~  650 (712)
                      |+...++.+++.
T Consensus        77 P~~~~~~~n~~~   88 (104)
T 2v5f_A           77 PEHQRANGNLKY   88 (104)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCHHHHhhHHH
Confidence            888888888873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.08  E-value=3.9e-05  Score=62.88  Aligned_cols=81  Identities=16%  Similarity=0.043  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139          393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP  471 (712)
Q Consensus       393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  471 (712)
                      ...+.+|..++..|+|..|+.+|++|+....... .......++..+|.+++.+|+++.|+.++++++.+        .|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence            3567899999999999999999999998775433 23467788999999999999999999999999998        67


Q ss_pred             HHHHHHHHHH
Q 005139          472 AVASVFVRLA  481 (712)
Q Consensus       472 ~~~~~~~~la  481 (712)
                      ....++.+++
T Consensus        78 ~~~~~~~n~~   87 (104)
T 2v5f_A           78 EHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHhhHH
Confidence            6666666665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.08  E-value=9.9e-05  Score=74.04  Aligned_cols=127  Identities=12%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139          489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL----EQAIKLLQKALKIYNDAPGQQSTVAGIEAQM  564 (712)
Q Consensus       489 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  564 (712)
                      .+.+|+.+|++|+++         .|..+.++..++.+|.....+    ......+..++...... ...+..+.++..+
T Consensus       214 ~~~~A~~l~e~Al~l---------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-~~~~~~a~~~~al  283 (372)
T 3ly7_A          214 SLNRASELLGEIVQS---------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-PELNNLSIIYQIK  283 (372)
T ss_dssp             HHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-ccCCcCHHHHHHH
Confidence            358899999999999         666677777777777532211    12223334444432222 2233445678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139          565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL  642 (712)
Q Consensus       565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~  642 (712)
                      +.++...|++++|+..+++|+.+-       +.  ..++..+|.++...|++++|++.|++|+.+        +|...
T Consensus       284 al~~l~~gd~d~A~~~l~rAl~Ln-------~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--------~P~~~  344 (372)
T 3ly7_A          284 AVSALVKGKTDESYQAINTGIDLE-------MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNL--------RPGAN  344 (372)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-------CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCSHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcC-------CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcC
Confidence            888888999999999999999971       11  367789999999999999999999999999        77664

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.06  E-value=0.00025  Score=76.08  Aligned_cols=168  Identities=11%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---------LRESKSYCENALRIY  504 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  504 (712)
                      .+..+-..+.+.|++++|+.+|+++...     |- .| ...+|..|-.++...+.         +++|..+|++.... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            3455567888999999999999988764     11 23 24566666666655443         67888888887654 


Q ss_pred             hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA  584 (712)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  584 (712)
                           +- .|+ ..+|..+...|.+.|++++|..+|++....     |..+.. .+|..+...|.+.|+.++|..+|++.
T Consensus       100 -----G~-~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A          100 -----KV-VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPRL-RSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             -----TC-CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHH
Confidence                 21 222 567889999999999999999999987653     333333 47888889999999999999999988


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       585 l~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .+.    +-. +.  ..+|..|-.+|.+.|+.++|.++|++..+.
T Consensus       167 ~~~----G~~-Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          167 VES----EVV-PE--EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHT----TCC-CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhc----CCC-CC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            652    222 22  368889999999999999999999997664

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.98  E-value=0.00022  Score=76.64  Aligned_cols=168  Identities=8%  Similarity=-0.016  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---------DHEAALEHLVLASMTM  422 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~  422 (712)
                      .+..+-..+.+.|++++|+.+|+++....   ..++    ..+|+.+-.++...+         .+++|.+.|.+...  
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G---v~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~--   98 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNG---VQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV--   98 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHT---CCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--
Confidence            34555677889999999999999987542   2222    225666665665443         36788888876542  


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                        .+..|+ ..+|..+...|...|++++|..+|++....     |  ......+|..+-..|.+.|++++|..+|++..+
T Consensus        99 --~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           99 --DKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             --TTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence              344444 357888899999999999999999987653     1  222356788999999999999999999999876


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                      .      +- .| ...+|..|-..|.+.|+.++|..++++..+.
T Consensus       169 ~------G~-~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          169 S------EV-VP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             T------TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             c------CC-CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            5      21 22 2467889999999999999999999987654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.98  E-value=0.0012  Score=63.48  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             ChhHHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHc-----CC
Q 005139          428 DAEVASVDCSIGDTYLS-----LSR------YDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRT-----GK  489 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~-----~g~------~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~  489 (712)
                      .+..+..++..|.++..     .|+      ...|...+++++++        +|.  ...++..||.+|...     |+
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            45555666666655533     233      46888889999998        776  567999999999995     99


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCChh-HHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhC
Q 005139          490 LRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  550 (712)
                      .++|..+|++|+++.         |. ....++..|..++. .|++++|..++++++...+..
T Consensus       220 ~ekA~~~ferAL~Ln---------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          220 MEKAHTAFEHLTRYC---------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHC---------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHHhC---------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999999993         32 26678899999988 499999999999999976653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.98  E-value=0.0001  Score=73.97  Aligned_cols=134  Identities=8%  Similarity=-0.001  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHhcC
Q 005139          435 DCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT---G-KLRESKSYCENALRIYEKP  507 (712)
Q Consensus       435 ~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~  507 (712)
                      ++..|..+...+   .+.+|+.+|++|+++        .|..+.++..++.+|...   + .......-+..++......
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            334455555444   358999999999999        898888888888877532   1 1122223333444432221


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                         ...+..+.++..++..+...|++++|+..+++|+.+.+       . +..+..+|.++...|++++|++.|.+|+.+
T Consensus       271 ---~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-------s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          271 ---PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-------S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             ---GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence               11344577888899889889999999999999999842       1 346788999999999999999999999997

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.0077  Score=63.32  Aligned_cols=218  Identities=12%  Similarity=0.046  Sum_probs=140.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005139          406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN  485 (712)
Q Consensus       406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  485 (712)
                      |+++.|++.+....+..+...+......++..+..+++..++|+...+++.-...    ..+. .............-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHH
Confidence            5678888777554444555666666778888899999999999887776543221    1111 1222222222222222


Q ss_pred             -HcCCHHHHHHHHHHHHHHHhcCCCCCC--ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 005139          486 -RTGKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA  562 (712)
Q Consensus       486 -~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  562 (712)
                       .....+.  ......+........+..  ....+.....|+.+|...|++.+|...+.....-.... .+......++.
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l  181 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL  181 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence             2222221  122233333222211211  12356777899999999999999999998876433221 22235567788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139          563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ  632 (712)
Q Consensus       563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  632 (712)
                      ....+|...+++.+|..++.++........ ..+......+..+|.++...++|.+|..+|.++......
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            889999999999999999999865444332 223445677888999999999999999999999886544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.75  E-value=0.0012  Score=63.31  Aligned_cols=83  Identities=11%  Similarity=-0.003  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139          324 LENSLMCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQA-----LQFSEAQKFCQMALDIHKDNGSPASLEEAADRR  396 (712)
Q Consensus       324 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  396 (712)
                      ...|...+++++++        +|.  ...+|..+|.+|...     |+.++|..+|++++++.+...       ...++
T Consensus       179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-------id~~v  243 (301)
T 3u64_A          179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-------PDHHI  243 (301)
T ss_dssp             HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-------SHHHH
T ss_pred             HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-------chHHH
Confidence            47888899999999        677  567999999999995     999999999999999987542       12678


Q ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHH
Q 005139          397 LMGLICET-KGDHEAALEHLVLASMT  421 (712)
Q Consensus       397 ~la~~~~~-~g~~~~A~~~~~~al~~  421 (712)
                      ..|..+.. .|++++|..++++++..
T Consensus       244 ~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          244 TYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            88998887 59999999999999853

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.71  E-value=0.0004  Score=60.29  Aligned_cols=111  Identities=14%  Similarity=-0.008  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      .+++..-...++..|.|+.|+.....++.+.......-.+...+.++..+|..++..++|..|...|++++...+.+...
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            44566677888899999999999999888864433333466677889999999999999999999999999987743211


Q ss_pred             C-----------------ChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139          345 T-----------------DPRVGETCRYLAEAHVQALQFSEAQKFCQM  375 (712)
Q Consensus       345 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  375 (712)
                      .                 .+...++.+.++.||...+++++|+..++.
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            1                 122347889999999999999999998765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.68  E-value=0.00024  Score=56.54  Aligned_cols=67  Identities=18%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          429 AEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       429 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +..+.++..+|.+++..++   .++|..++++++.+        +|....++..+|.+++..|+|++|+.+++++++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3345677888888876666   79999999999999        8999999999999999999999999999999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.67  E-value=0.00071  Score=58.77  Aligned_cols=113  Identities=10%  Similarity=0.039  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE  299 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  299 (712)
                      ....++.....++..+. |+.|+-+...++.+.+...+.......+.++..+|..++..++|..|...|++++.+.....
T Consensus        19 ~~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~   97 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS   97 (167)
T ss_dssp             --CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence            34567888889999986 99999999999988765332223355678899999999999999999999999998865332


Q ss_pred             cccc----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          300 GQEH----------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTT  333 (712)
Q Consensus       300 ~~~~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  333 (712)
                      ....                .....++.+.++.||..++++++|+..++.
T Consensus        98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            1111                111345689999999999999999998775

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.67  E-value=0.00028  Score=56.11  Aligned_cols=70  Identities=16%  Similarity=-0.021  Sum_probs=61.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139          217 KPGLGPLLLKQARELISSGDN--PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI  294 (712)
Q Consensus       217 ~p~~~~~l~~~a~~~~~~g~~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~  294 (712)
                      +|+.+..+..+|..++..++.  .++|..++++|+++.         |..+.++..+|..++..|+|++|+.+++++++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            688899999999999877642  599999999999874         556888999999999999999999999999988


Q ss_pred             h
Q 005139          295 P  295 (712)
Q Consensus       295 ~  295 (712)
                      .
T Consensus        73 ~   73 (93)
T 3bee_A           73 N   73 (93)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.52  E-value=0.00095  Score=57.64  Aligned_cols=83  Identities=5%  Similarity=-0.108  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139          558 AGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (712)
Q Consensus       558 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (712)
                      ..+.+++|+++.+.+   ++++++.+++..++.-      .+.....+++.||..|.+.|+|++|+.++++++++     
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-----  100 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----  100 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence            468889999999988   6779999999888741      12245689999999999999999999999999999     


Q ss_pred             CCCChhhHHHHHHHHHHHHH
Q 005139          635 GPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       635 ~~~~p~~~~~~~~La~~~~~  654 (712)
                         .|++..+..-.-.+-..
T Consensus       101 ---eP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A          101 ---EPQNNQAKELERLIDKA  117 (152)
T ss_dssp             ---CTTCHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHH
Confidence               88877776655544443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.021  Score=59.91  Aligned_cols=221  Identities=12%  Similarity=-0.011  Sum_probs=140.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (712)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (712)
                      .|+++.|++.+....+..+...+  ......++..+..++...|+++...+++....   ...+..............-|
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d--~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr~qlk~ai~~~V~~~~~~  103 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASD--LASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKHGQLKLSIQYMIQKVMEY  103 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCS--TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTTTSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHH
Confidence            36677887766444443333332  22334567778889999999998877664322   22232222222222222222


Q ss_pred             H-HcCCHHHHHHHHHHHHHHHHHhcC-C--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139          443 L-SLSRYDEAGFAYQKALTAFKTNKG-E--NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS  518 (712)
Q Consensus       443 ~-~~g~~~~A~~~~~~al~~~~~~~~-~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  518 (712)
                      . .....+.  ......+........ .  -....+.....|+.+|...|++.+|...+.....-...   ..+......
T Consensus       104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve  178 (445)
T 4b4t_P          104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQ  178 (445)
T ss_dssp             HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHH
T ss_pred             HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHH
Confidence            2 1222221  111122222111110 0  02235677889999999999999999999987654433   334556778


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      .+.....+|...+++.+|...+.++..........+......+...|.++...++|.+|..+|..+.......++
T Consensus       179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d  253 (445)
T 4b4t_P          179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD  253 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence            888999999999999999999999876555554444456677888999999999999999999999887655443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.43  E-value=0.0016  Score=56.17  Aligned_cols=67  Identities=10%  Similarity=0.013  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          430 EVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ....+.+++|.++....   +.++++.+++..++.       +.| ....++++||..|++.|+|++|+.+++.++++
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45678899999999988   677999999999887       226 66899999999999999999999999999999

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.85  E-value=0.013  Score=49.77  Aligned_cols=107  Identities=19%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          433 SVDCSIGDTYLSLSRY------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ..+..........|+.      ++-++.|++|+..............+..|...|.. ...++.++|...|+.++.+ .+
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-hK   91 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-CK   91 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH-CT
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH-hH
Confidence            3444444555555777      77788888888764333223456678888888866 5669999999999999998 22


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                              ..+.+|...|..-.++|+...|.+.+.+|+.+.+.
T Consensus        92 --------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           92 --------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             --------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             --------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence                    23889999999999999999999999999986543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.70  E-value=0.01  Score=49.20  Aligned_cols=78  Identities=12%  Similarity=-0.033  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----------hhhhCCCC-h-hHHHHHHHHHHHHHHhc
Q 005139          616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----------EEKLGTAN-P-DVDDEKRRLAELLKEAG  683 (712)
Q Consensus       616 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----------~~~l~~~~-p-~~~~~~~~la~~~~~~g  683 (712)
                      ...+...|.+.+..        .+....+.+++|+++....+          .+.+...+ | ...++++.||..+++.|
T Consensus        17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence            34455556665554        44667889999999988776          33344444 6 67889999999999999


Q ss_pred             cHHHHHHHHHHHHHHhccc
Q 005139          684 RVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       684 ~~~~A~~~~l~~~l~~~p~  702 (712)
                      +|.+|. ++++.+|+..|+
T Consensus        89 ~Y~~A~-~~~~~lL~~eP~  106 (126)
T 1nzn_A           89 EYEKAL-KYVRGLLQTEPQ  106 (126)
T ss_dssp             CHHHHH-HHHHHHHHHCTT
T ss_pred             hHHHHH-HHHHHHHHhCCC
Confidence            999999 999999999995

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.69  E-value=0.02  Score=48.51  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139          471 PAVASVFVRLADMYNRTGKL------RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (712)
                      |.....|..........|+.      ++-++.|++|+....... ......++..|...|.. ...++.++|...|+.++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            34455666666667777888      888889999988754321 23345577788888866 56699999999999999


Q ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+...       .+.++...|..-.++|+...|...+.+|+.+
T Consensus        88 ~~hKk-------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           88 ANCKK-------FAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHCTT-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            97221       1789999999999999999999999999884

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.41  E-value=0.11  Score=43.00  Aligned_cols=98  Identities=9%  Similarity=-0.014  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHH
Q 005139          533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-SAFFGVALNQMGLACV  611 (712)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~lg~~~~  611 (712)
                      ...+...|.+.+..     +.  ....+.+.+|+++.+..+...    .++++.++..+.... +...-.+++.||..+.
T Consensus        17 l~~~~~~y~~e~~~-----~~--~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y   85 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA-----GS--VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHH-----SC--CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-----CC--CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            34455555555442     11  123677899999999877665    234444444444444 3355689999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139          612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA  649 (712)
Q Consensus       612 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La  649 (712)
                      +.|+|.+|+.+++..+++        .|++..+..-..
T Consensus        86 klg~Y~~A~~~~~~lL~~--------eP~n~QA~~Lk~  115 (126)
T 1nzn_A           86 RLKEYEKALKYVRGLLQT--------EPQNNQAKELER  115 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence            999999999999999999        887766554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.02  E-value=0.15  Score=58.26  Aligned_cols=98  Identities=17%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             HHHHcCCHhHHHH-HHHHhhc-hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          274 IYCSLGQYNEAIP-VLEQSIE-IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE  351 (712)
Q Consensus       274 ~~~~~g~~~~A~~-~~~~al~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  351 (712)
                      .....+++++|.. ++.. +. .          .    .+..+...+...|.+++|+...+.             +..  
T Consensus       608 ~~~~~~~~~~a~~~~l~~-i~~~----------~----~~~~~~~~l~~~~~~~~a~~~~~~-------------~~~--  657 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPN-VEGK----------D----SLTKIARFLEGQEYYEEALNISPD-------------QDQ--  657 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGG-CCCH----------H----HHHHHHHHHHHTTCHHHHHHHCCC-------------HHH--
T ss_pred             HHHHhCCHHHHHHHHHhc-CCch----------H----HHHHHHHHHHhCCChHHheecCCC-------------cch--
Confidence            3446788988876 4411 11 1          0    135566777888888887765532             111  


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a  418 (712)
                       .   .......|++++|.++.+..       ..      ...|..+|..+...|+++.|+.+|.++
T Consensus       658 -~---f~~~l~~~~~~~A~~~~~~~-------~~------~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          658 -K---FELALKVGQLTLARDLLTDE-------SA------EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             -H---HHHHHHHTCHHHHHHHHTTC-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -h---eehhhhcCCHHHHHHHHHhh-------Cc------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence             1   12346678999888775322       11      236889999999999999999999876

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.021  Score=59.70  Aligned_cols=109  Identities=9%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139          472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP  551 (712)
Q Consensus       472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (712)
                      ....++..+|..|...|++++|.+.|.++......      .......+..+..++...+++..+..++.++..+.... 
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-  201 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-  201 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence            34567889999999999999999999999887644      23467888899999999999999999999998887654 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      +++..........|.++...++|.+|..+|-.+...
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            444445556667788888999999999999887654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.087  Score=55.07  Aligned_cols=144  Identities=13%  Similarity=0.023  Sum_probs=66.4

Q ss_pred             HHHHhCCHHHHHHHHHHHH--HHHHhcC-CCCCHHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHHHhC
Q 005139          359 AHVQALQFSEAQKFCQMAL--DIHKDNG-SPASLEEAADRRLMGLICETKGDHEAAL----------EHLVLASMTMIAN  425 (712)
Q Consensus       359 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~a~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~~~~  425 (712)
                      .++..+++++|..+....+  ....... ..-+...+.+|+..+.++...|+.....          ..+..+++.....
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456778888888877655  2222111 1122345667888888888888776532          2333333333344


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      .+....+.+++.+-+.|...+.|+.|..+..++.-  ... ...+...+..++.+|.++..+++|.+|.+++..|+..+.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            56667888999999999999999999999988741  110 011345678889999999999999999999999987654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.045  Score=57.25  Aligned_cols=111  Identities=21%  Similarity=0.123  Sum_probs=88.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      ......++..+|..|...|++++|.+.|.++...+..     .......+..+..++...+++..+..++.++..+... 
T Consensus       127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-  200 (429)
T 4b4t_R          127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-  200 (429)
T ss_dssp             CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-
Confidence            3445567788999999999999999999998776432     3445778888899999999999999999999888766 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                        +.+...........|.++...++|..|..+|-.++..
T Consensus       201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence              3344444556667788888899999999999887654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=95.64  E-value=1.9  Score=42.44  Aligned_cols=229  Identities=18%  Similarity=0.140  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      .+..++.-|..+++|++|++++...                    +..+.+.|++..|.++..-.++.+.+..-+-.   
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---   93 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASV--------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---   93 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---
Confidence            3444555566666666666655443                    44555556666666555555555555432211   


Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH----------
Q 005139          474 ASVFVRLADMYNRTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK----------  542 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------  542 (712)
                      ......+..++.....- ..=..+..+++....+.  +.........+..+|..|...+++.+|..+|--          
T Consensus        94 ~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a  171 (336)
T 3lpz_A           94 GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA  171 (336)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence            12334444444433321 12244666777665542  222233456688899999999999999887621          


Q ss_pred             -H-HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------------CChHHHHHH
Q 005139          543 -A-LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----------------KSAFFGVAL  603 (712)
Q Consensus       543 -a-l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~  603 (712)
                       . .+.....  ...............|+..++...|..++....+.+......                 ..+.+  -+
T Consensus       172 ~mL~ew~~~~--~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NF  247 (336)
T 3lpz_A          172 RMEYEWYKQD--ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NF  247 (336)
T ss_dssp             HHHHHHHHTS--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--HH
T ss_pred             HHHHHHHHhc--CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--HH
Confidence             1 1111111  122333233344456778899999999888877765432211                 12221  12


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                      ..+-.+-++.+.    ...|....+.+...+..+.|.....+..+|..|+..
T Consensus       248 l~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          248 ISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             HHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence            223334445554    356666666666655544337888999999999865

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.27  E-value=0.25  Score=41.08  Aligned_cols=79  Identities=5%  Similarity=-0.099  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139          558 AGIEAQMGVMYYMLGNYS---DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (712)
                      ..+.+++|+++.+..+..   +++.+++..+..       .+...-..++.||..+.+.|+|.+|+.+.+..+++     
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~-----  107 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----  107 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----
Confidence            367788999999887653   556666555442       23345689999999999999999999999999998     


Q ss_pred             CCCChhhHHHHHHHHHH
Q 005139          635 GPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       635 ~~~~p~~~~~~~~La~~  651 (712)
                         .|++..+..-...+
T Consensus       108 ---eP~N~QA~~Lk~~I  121 (134)
T 3o48_A          108 ---ERNNKQVGALKSMV  121 (134)
T ss_dssp             ---CTTCHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHH
Confidence               88777665544433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.09  E-value=0.21  Score=56.97  Aligned_cols=50  Identities=16%  Similarity=0.176  Sum_probs=37.5

Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE  336 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  336 (712)
                      ......|++++|.++.+..          +++    ..|..+|..+...++++.|+.+|.++-.
T Consensus       660 ~~~l~~~~~~~A~~~~~~~----------~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDE----------SAE----MKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTC----------CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             ehhhhcCCHHHHHHHHHhh----------CcH----hHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            3456678888888775432          111    2489999999999999999999998643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.29  Score=51.20  Aligned_cols=145  Identities=12%  Similarity=0.018  Sum_probs=65.6

Q ss_pred             HHHHcCCHHHHHHHHHHHH--HHHH---hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-cC
Q 005139          401 ICETKGDHEAALEHLVLAS--MTMI---ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY-------QKALTAFKTN-KG  467 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~  467 (712)
                      .+...+++++|..+-...+  ....   ....+...+.+|+..+.++...|+........       ...+..++.. ..
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456788888887776554  1221   12234456677887788887777766543221       1222233322 22


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (712)
                      .+....+..++.+-+.|...+.+++|..+..++.  +...  .......+..++.+|.++..+++|.+|.+++..|+..+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            2455677888899999999999999999998874  2111  12345568888999999999999999999999998766


Q ss_pred             Hh
Q 005139          548 ND  549 (712)
Q Consensus       548 ~~  549 (712)
                      +.
T Consensus       301 p~  302 (523)
T 4b4t_S          301 PH  302 (523)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.52  E-value=0.5  Score=39.79  Aligned_cols=80  Identities=5%  Similarity=-0.109  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139          558 AGIEAQMGVMYYMLGNYS---DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (712)
                      ..+.+++|+++.+..+..   +++.+++..+..       .+...-..++.||..+.++|+|.+|..+.+..+++     
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~-----  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----
Confidence            467889999999987655   455555554441       22234578999999999999999999999999998     


Q ss_pred             CCCChhhHHHHHHHHHHH
Q 005139          635 GPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       635 ~~~~p~~~~~~~~La~~~  652 (712)
                         .|++..+..-...+-
T Consensus       107 ---eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A          107 ---ERNNKQVGALKSMVE  121 (144)
T ss_dssp             ---CCCCHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHH
Confidence               787766554444433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.34  E-value=4.2  Score=39.70  Aligned_cols=171  Identities=9%  Similarity=-0.060  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      .+..+..-|..+++|++|++.+.                    .-+..+.+.|++..|.++..-.++.+.+...+.   .
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~--------------------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~---~   91 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELIS--------------------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV---D   91 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC---S
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHH--------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---C
Confidence            34444555555555555555544                    445556666777777666666666666553221   2


Q ss_pred             HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH---------
Q 005139          474 ASVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA---------  543 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------  543 (712)
                      ......+..++.....-+ .=..+..+++....+.  +......+..+..+|..|...|++.+|..+|-..         
T Consensus        92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a  169 (312)
T 2wpv_A           92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYV  169 (312)
T ss_dssp             HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHH
Confidence            234444555544422111 2356777788777654  2222334667899999999999999999877321         


Q ss_pred             ---HHHHHhCCCCCCcHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          544 ---LKIYNDAPGQQSTVAGIEAQ-MGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       544 ---l~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                         .+.....++..+.....+.. ....|...|+...|...|........
T Consensus       170 ~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~  219 (312)
T 2wpv_A          170 DLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI  219 (312)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence               11122211122222333333 33456778999999999988776653

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.16  E-value=0.16  Score=42.78  Aligned_cols=63  Identities=13%  Similarity=-0.021  Sum_probs=51.1

Q ss_pred             hhhHHHHHHHHHHHHHccc----------hhhhCCCCh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          639 PDTLGVYSNLAGTYDAIGR----------EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       639 p~~~~~~~~La~~~~~~g~----------~~~l~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .-...+.+++|+++....+          .+.+...+| ...++++.||..++++|+|.+|. ++.+.+|+..|+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCCC
Confidence            3456788899998888776          333333445 57789999999999999999999 999999999995

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.88  E-value=0.2  Score=41.63  Aligned_cols=61  Identities=13%  Similarity=-0.020  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHHccc----------hhhhCCCCh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          641 TLGVYSNLAGTYDAIGR----------EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       641 ~~~~~~~La~~~~~~g~----------~~~l~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ...+.+++|+++.....          .+.+...+| ...++++.||..+.+.|+|.+|. ++.+.+|+..|+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP~  110 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN  110 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence            34678888888887766          233334456 56889999999999999999999 999999999996

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.52  Score=52.23  Aligned_cols=121  Identities=7%  Similarity=-0.083  Sum_probs=81.7

Q ss_pred             hCC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH----hCC-CC-----
Q 005139          363 ALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE---TKGDHEAALEHLVLASMTMI----AND-QD-----  428 (712)
Q Consensus       363 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~----~~~-~~-----  428 (712)
                      .++ ++.|+.++++.....+...         +++..+.+..   ...+--+|+..+.+++....    ... .+     
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~---------~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHD---------IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchh---------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            344 5778888887665543221         2222222222   12334567777766664321    111 11     


Q ss_pred             --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          429 --AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       429 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                        +.....+...+..+...|+|+-|+.+.++|+..        .|....+|..|+.+|..+|+|+.|+-.++.+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence              222345666788888999999999999999999        8888999999999999999999999887665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.56  E-value=6.6  Score=44.46  Aligned_cols=302  Identities=13%  Similarity=0.101  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      ..+...||.++  .|+.++++..+.+.+.-.    +...+.....+++.+|.++...++  +++.++...+.-.....+.
T Consensus       376 ~sA~aSLGlIh--~g~~~~gl~~L~~yL~~~----~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~  447 (963)
T 4ady_A          376 FTATASLGVIH--KGNLLEGKKVMAPYLPGS----RASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGD  447 (963)
T ss_dssp             HHHHHHHHHHT--SSCTTTHHHHHTTTSTTS----CCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHHHhhhhc--cCchHHHHHHHHHhcccc----CCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccc
Confidence            33444555555  577788888887766421    123344566678888988877664  5777666665442100000


Q ss_pred             --CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          345 --TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       345 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                        .......+...||.++.-.++ +++...+...+.-   .   .......+-..+|.++.-.|+-+-....+..+..  
T Consensus       448 ~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d---d---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e--  518 (963)
T 4ady_A          448 EDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN---D---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE--  518 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT---C---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH--
T ss_pred             cccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc---C---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc--
Confidence              011223456678887776666 3455555554431   1   1111223556788888888987666555554431  


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCENAL  501 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  501 (712)
                        . . .+...-...+|..+...|+.+.+....+.....       .+|. ...+...+|..|...|+...-..++..+.
T Consensus       519 --~-~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          519 --T-Q-HGNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             --C-S-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             --c-C-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence              1 2 222233344555555677877666665544332       1332 23345667888889999655444665554


Q ss_pred             HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF  581 (712)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  581 (712)
                      .-         .........-+|..+...|+.+.+...    +.+.... ++......+-..+|.+....++ .+|+..+
T Consensus       588 ~d---------~~d~VRraAViaLGlI~~g~~e~v~rl----v~~L~~~-~d~~VR~gAalALGli~aGn~~-~~aid~L  652 (963)
T 4ady_A          588 SD---------SNDDVRRAAVIALGFVLLRDYTTVPRI----VQLLSKS-HNAHVRCGTAFALGIACAGKGL-QSAIDVL  652 (963)
T ss_dssp             HC---------SCHHHHHHHHHHHHHHTSSSCSSHHHH----TTTGGGC-SCHHHHHHHHHHHHHHTSSSCC-HHHHHHH
T ss_pred             cC---------CcHHHHHHHHHHHHhhccCCHHHHHHH----HHHHHhc-CCHHHHHHHHHHHHHhccCCCc-HHHHHHH
Confidence            32         111122223334444445554332222    2222222 2222222233345555433343 5666666


Q ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC
Q 005139          582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYS  615 (712)
Q Consensus       582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~  615 (712)
                      .+...      +.+......+...||.+.....+
T Consensus       653 ~~L~~------D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          653 DPLTK------DPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             HHHHT------CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             HHHcc------CCCHHHHHHHHHHHHHHhcCCcc
Confidence            66532      33333333466677766665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.56  E-value=2  Score=43.94  Aligned_cols=103  Identities=12%  Similarity=-0.014  Sum_probs=80.1

Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcccc---hH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH---AL----------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ  338 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  338 (712)
                      |......|+.+.|...+.+|+.+....+-+..   ++          ....+...++..+...|++.+|+..+..++.. 
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-  200 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-  200 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            44445578999999999999998643221211   11          12334566788889999999999999999887 


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139          339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD  382 (712)
Q Consensus       339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  382 (712)
                             +|..-.++..+-.++...|+..+|+..|+++......
T Consensus       201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~  237 (388)
T 2ff4_A          201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD  237 (388)
T ss_dssp             -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                   7877788999999999999999999999999887654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.46  E-value=0.35  Score=53.62  Aligned_cols=59  Identities=17%  Similarity=0.025  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA  376 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  376 (712)
                      .+...+..+...|+|+-|+.+.++|+..        .|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4666788888999999999999999999        6888999999999999999999999776654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.12  E-value=0.94  Score=51.46  Aligned_cols=106  Identities=5%  Similarity=-0.080  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND  426 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  426 (712)
                      .....+|..|-..|.+.|+.++|..+|.+..........++    ..+|+.|-..|...|++++|.+.|.+..    ..+
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G  195 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVK----DAG  195 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTT
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcC
Confidence            45566888999999999999999999988765543333333    3489999999999999999999998764    335


Q ss_pred             CChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 005139          427 QDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTA  461 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  461 (712)
                      ..|+. .+|+.+-.++.+.|+. ++|..+|++....
T Consensus       196 ~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            55554 5677777788898985 7888999887664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.87  E-value=1.2  Score=45.60  Aligned_cols=105  Identities=11%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCC-----CC-----------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139          404 TKGDHEAALEHLVLASMTMIAND-----QD-----------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG  467 (712)
Q Consensus       404 ~~g~~~~A~~~~~~al~~~~~~~-----~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  467 (712)
                      ..|+.+.|...+.+|+.+....-     ..           .....+...++..+...|++.+|+..+..++..      
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~------  200 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE------  200 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            45666777777777665442110     00           112234556778888999999999999999888      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139          468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI  516 (712)
Q Consensus       468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  516 (712)
                        +|..-.++..+..++...|+..+|+..|+++.+.+..-++-...+..
T Consensus       201 --~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          201 --HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             --STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence              88878899999999999999999999999998876554333334443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.86  E-value=1.5  Score=38.73  Aligned_cols=103  Identities=12%  Similarity=0.001  Sum_probs=66.4

Q ss_pred             HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139          273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET  352 (712)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  352 (712)
                      ......|+++.|.++.+..-          .    -..|..||......|+++-|..+|.++-..               
T Consensus        13 ~LAL~lg~l~~A~e~a~~l~----------~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------   63 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKLN----------D----SITWERLIQEALAQGNASLAEMIYQTQHSF---------------   63 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC----------C----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------
T ss_pred             HHHHhcCCHHHHHHHHHHhC----------C----HHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------------
Confidence            34567899999998876531          1    124899999999999999999999886443               


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (712)
Q Consensus       353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a  418 (712)
                       ..+..+|...|+.+.-.+.    .++....+.         ++....+++.+|+++++++.|.+.
T Consensus        64 -~~L~~Ly~~tg~~e~L~kl----a~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 -DKLSFLYLVTGDVNKLSKM----QNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             -HHHHHHHHHHTCHHHHHHH----HHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHhCCHHHHHHH----HHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence             1233455566776543333    233333222         334455667788888888777543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.85  E-value=0.94  Score=39.97  Aligned_cols=101  Identities=10%  Similarity=-0.046  Sum_probs=66.2

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139          360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG  439 (712)
Q Consensus       360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  439 (712)
                      ....|+++.|.+..+..       ..      ...|..||......|+++-|..+|.++-       +       +..+.
T Consensus        15 AL~lg~l~~A~e~a~~l-------~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D-------~~~L~   67 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-------ND------SITWERLIQEALAQGNASLAEMIYQTQH-------S-------FDKLS   67 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C-------HHHHH
T ss_pred             HHhcCCHHHHHHHHHHh-------CC------HHHHHHHHHHHHHcCChHHHHHHHHHhC-------C-------HHHHH
Confidence            45789999998887653       11      2368999999999999999999998762       2       23344


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                      .+|...|+.+.-....+.+...    +   .      +.....+++.+|++++++++|.+.
T Consensus        68 ~Ly~~tg~~e~L~kla~iA~~~----g---~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           68 FLYLVTGDVNKLSKMQNIAQTR----E---D------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHT----T---C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHC----c---c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5566677775544443333221    1   1      122234567788988888887654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.79  E-value=4.4  Score=34.99  Aligned_cols=170  Identities=12%  Similarity=0.022  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK----------LR  589 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~  589 (712)
                      -..++..+.-.|+|..++-.+..       .     ..+...+.-+.+|...++|..|+..++..+.-          .-
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            34567778888998887765532       1     11245566788999999999999999998731          00


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------HHH-hcCCCCh------hhH---------HHHHH
Q 005139          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI------LEQ-ECGPYHP------DTL---------GVYSN  647 (712)
Q Consensus       590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~-~~~~~~p------~~~---------~~~~~  647 (712)
                      +.--.++..-...+..+|.++.+.|+.++|+.+|.....+      .+. ++...-|      +..         .-+..
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d  183 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSD  183 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhh
Confidence            1111112223357788999999999999999999988765      010 0110001      000         00011


Q ss_pred             HHHHHHHccc--hhhhCCCChhHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          648 LAGTYDAIGR--EEKLGTANPDVDDE-KRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       648 La~~~~~~g~--~~~l~~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      ...++....+  .++....-|..... ....+.-|...|-.++.+ ..|..+-..+|.
T Consensus       184 ~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~  240 (242)
T 3kae_A          184 SIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             HHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCC
Confidence            1111111111  22333344544432 335577788899999999 999999888885

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.75  E-value=0.9  Score=51.63  Aligned_cols=100  Identities=10%  Similarity=-0.002  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE  468 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  468 (712)
                      ..+|+.+-..|...|+.++|...|.......     ...   ...+|+.+-..|.+.|++++|.++|++..+.     | 
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~-----~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G-  195 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-----QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G-  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH-----HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-
Confidence            3345555555555555555555554432100     000   2344555555555555555555555554332     1 


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 005139          469 NHPAVASVFVRLADMYNRTGKL-RESKSYCENALRI  503 (712)
Q Consensus       469 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  503 (712)
                      -.| ...+|+.+-..+.+.|+. ++|..+|++....
T Consensus       196 ~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            022 233444444455555542 4455555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.90  E-value=2.6  Score=50.03  Aligned_cols=166  Identities=10%  Similarity=0.005  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHH----------------HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          519 GLTDVSSIYESMNELEQAIKLLQKALKIY----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      ..+.+|.++...|++++|..+|++|-.-.                .............|..+..++.+.+.++.++++.+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35789999999999999999998863111                11111122334567788889999999999999999


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhh--
Q 005139          583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK--  660 (712)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~--  660 (712)
                      .|++..   ...........|..+=..+...|+|++|...+...-.         ......++..|-...+..|....  
T Consensus       924 lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          924 LADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             HHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence            998752   2222222334677888889999999999877643221         22234455555555555555000  


Q ss_pred             -----------------------hCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005139          661 -----------------------LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA  699 (712)
Q Consensus       661 -----------------------l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~  699 (712)
                                             .....|.   .+.-|=-.+...|++++|..-.|+.+.+.
T Consensus       992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~---Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B          992 NYSMPTLRQDVDNLLERKAFQMINVESQPC---WYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHhCCccccCCC---HHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence                                   0111222   23333444556899998886677766544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.68  E-value=10  Score=36.89  Aligned_cols=170  Identities=8%  Similarity=-0.064  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE  514 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  514 (712)
                      +..++.-|..+++|++|++++.....                      .+.+.|++..|.++..-.++.+.+..   ...
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------~ll~~~Q~~sa~DLa~llvev~~~~~---~~~   90 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQGAL----------------------SFLKAKQGGSGTDLIFYLLEVYDLAE---VKV   90 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHHTT---CCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHHcC---CCC
Confidence            33444556666777777666554433                      33444555555444444444444321   011


Q ss_pred             hHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH--------HH
Q 005139          515 EIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN--------AI  585 (712)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al  585 (712)
                       .......+..++.....-+ .=.++..+++....+..+........+..+|..|+..|++.+|..+|-.        ..
T Consensus        91 -~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a  169 (312)
T 2wpv_A           91 -DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYV  169 (312)
T ss_dssp             -SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHH
Confidence             1122333334333321111 1255667777776665333344456788899999999999999987731        11


Q ss_pred             HHHHHhCCC---CChHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHH
Q 005139          586 SKLRAIGER---KSAFFGVALNQMG-LACVQRYSINEAVELFEEARSIL  630 (712)
Q Consensus       586 ~~~~~~~~~---~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~  630 (712)
                      .+.-+....   ..+.....+...+ ..|...|+...|..+|.......
T Consensus       170 ~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          170 DLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            111111111   1222233333333 45678899999999998877665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.43  E-value=23  Score=40.23  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=86.7

Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR  589 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  589 (712)
                      .....-+++.+|.++...++  +++.++...+.-.....+.   ......+...||.+|...++ +++.+.+...+.   
T Consensus       409 ~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---  482 (963)
T 4ady_A          409 RFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---  482 (963)
T ss_dssp             HHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh---
Confidence            33456778888888776664  6777777766543211121   11222345578888776665 455566655554   


Q ss_pred             HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhC
Q 005139          590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLG  662 (712)
Q Consensus       590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~  662 (712)
                         +........+-..||.++...|+-+-...++..+.+-        ..+...-...+|..+...|+       .+.+.
T Consensus       483 ---dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L~  551 (963)
T 4ady_A          483 ---NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKML  551 (963)
T ss_dssp             ---TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred             ---cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence               1111111246667888888888876655555554431        12222222333333334444       22222


Q ss_pred             -CCChhHH-HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005139          663 -TANPDVD-DEKRRLAELLKEAGRVRSRKAQSLETLL  697 (712)
Q Consensus       663 -~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~l~~~l  697 (712)
                       ..+|... .+...+|..|.-.|+...-. +.+..+.
T Consensus       552 ~~~dp~vRygaa~alglAyaGTGn~~aIq-~LL~~~~  587 (963)
T 4ady_A          552 ASDESLLRYGGAFTIALAYAGTGNNSAVK-RLLHVAV  587 (963)
T ss_dssp             HCSCHHHHHHHHHHHHHHTTTSCCHHHHH-HHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHhc
Confidence             2334332 23455677777777754333 4554444

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.37  E-value=3.5  Score=35.59  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHH
Q 005139          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA----------FKT  464 (712)
Q Consensus       395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~  464 (712)
                      -..++.++.-.|.|..++-++..         .  ..+.+.+.-+.||....+|..|+..++..++-          .-+
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~~---------l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLHK---------L--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---------C--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHHh---------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            44678888899999999877642         2  22445556778999999999999999998831          111


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ..--+..+.-..+..+|.++...|+.++|+.++.....+
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            111123344567888999999999999999999988776

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.93  E-value=13  Score=36.54  Aligned_cols=229  Identities=11%  Similarity=0.031  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      ..+..++.=|...++|++|++++....                      ..+...|++..|.++....++.+...+...+
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA----------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~   93 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASVS----------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD   93 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence            344455555667777777777655443                      3344445555555555444444444333333


Q ss_pred             HHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------
Q 005139          431 VASVDCSIGDTYLSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE-----------  498 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-----------  498 (712)
                      . .....+..++.....-+ .=..+.++++....+.+ .........+..+|..|+..+++.+|..+|-           
T Consensus        94 ~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a  171 (336)
T 3lpz_A           94 G-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA  171 (336)
T ss_dssp             H-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence            2 33344455544443211 22456777777766643 2233445677889999999999999988762           


Q ss_pred             -HHHHHHhcCCCCCCChhHHHHHH-HHHHHHHHcccHHHHHHHHHHHHHHHHh-CCC---------------CC-CcHHH
Q 005139          499 -NALRIYEKPVPGVPPEEIASGLT-DVSSIYESMNELEQAIKLLQKALKIYND-APG---------------QQ-STVAG  559 (712)
Q Consensus       499 -~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~---------------~~-~~~~~  559 (712)
                       -..+.....     .+.....+. .....|+..++...|...+....+.... .+.               .+ ..+..
T Consensus       172 ~mL~ew~~~~-----~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN  246 (336)
T 3lpz_A          172 RMEYEWYKQD-----ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN  246 (336)
T ss_dssp             HHHHHHHHTS-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH
T ss_pred             HHHHHHHHhc-----CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH
Confidence             111122221     122233333 3344577889999999988777765422 111               00 11111


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005139          560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR  613 (712)
Q Consensus       560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~  613 (712)
                      .. .+..+-...+.    ...|....+.+.......++.+...+..+|..|+..
T Consensus       247 Fl-~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          247 FI-SMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             HH-HHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred             HH-HHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence            22 22223334443    355665555554433333323446777777777754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.70  E-value=8.5  Score=45.57  Aligned_cols=102  Identities=11%  Similarity=-0.007  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTM-----------------IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ  456 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  456 (712)
                      ..+.+|.++...|++++|..+|+++...+                 ............|..+..++...+.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34789999999999999999998873111                 1111122234567888889999999999999999


Q ss_pred             HHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          457 KALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCEN  499 (712)
Q Consensus       457 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  499 (712)
                      .|++..    ..+.+. ....|.++-..+...|+|++|...+..
T Consensus       924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            998762    223333 334678888899999999999777643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.36  E-value=3.3  Score=43.60  Aligned_cols=81  Identities=10%  Similarity=0.071  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH  638 (712)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  638 (712)
                      .++..||.+......+..|..+|.+|..+.        |..+..++.||.+....|+.-+|+-+|-+++..        .
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~--------~  216 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--------K  216 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--------S
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc--------C
Confidence            467789999999999999999999999973        445689999999999999999999999999875        3


Q ss_pred             hhhHHHHHHHHHHHHHc
Q 005139          639 PDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       639 p~~~~~~~~La~~~~~~  655 (712)
                      .....+..||..++...
T Consensus       217 ~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          217 FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             BCCHHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHH
Confidence            34566778888777654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.24  E-value=0.97  Score=47.65  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      .++..+|.+......+..|..+|.+|..+        .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46778999999999999999999999999        8999999999999999999999999999988864

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.64  E-value=20  Score=36.42  Aligned_cols=131  Identities=11%  Similarity=0.061  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------CCCChhHHHHHHHH
Q 005139          370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-----------NDQDAEVASVDCSI  438 (712)
Q Consensus       370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~l  438 (712)
                      +++|...+.-+.....+  ...+   ..+..+.....+.++|++++.+.......           .........+...+
T Consensus        59 ~~ly~~fi~~f~~kin~--L~lv---~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i  133 (393)
T 4b4t_O           59 LRLYDNFVSKFYDKINQ--LSVV---KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI  133 (393)
T ss_dssp             HHHHHHHHHHHHHHSCS--HHHH---HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCH--HHHH---HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence            45556555555443322  1111   11234556678899999998765322211           01123355667788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      +..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+...+-.++..+.
T Consensus       134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999888876665566777788888889999999998887777777654

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=87.19  E-value=7.8  Score=37.74  Aligned_cols=78  Identities=18%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             CChhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          427 QDAEVASVDCSIGDTYLSL--SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       427 ~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                      .-...+.++.+||.+-...  .....++.+|.+|+...+..++..|   ...|..+|..+++.+++.+|+..+-.|-...
T Consensus       250 hL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi  326 (472)
T 3re2_A          250 HIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVA  326 (472)
T ss_dssp             TTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence            3344455666666665442  2223489999999999998885433   5678889999999999999999999999887


Q ss_pred             hcC
Q 005139          505 EKP  507 (712)
Q Consensus       505 ~~~  507 (712)
                      +..
T Consensus       327 ~~Y  329 (472)
T 3re2_A          327 GKY  329 (472)
T ss_dssp             TTS
T ss_pred             HHc
Confidence            764

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.93  E-value=28  Score=35.26  Aligned_cols=110  Identities=8%  Similarity=-0.049  Sum_probs=77.0

Q ss_pred             HHHHHHcCCHhHHHHHHHHhhchhhhhhcc--------cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139          272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ--------EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (712)
Q Consensus       272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (712)
                      ..+.....+.++|++++++...........        .+....+.+...++..|...|+.+.|..+++++-.......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            445566789999999998775543221111        112234556788999999999999999999999887766433


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK  381 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  381 (712)
                      .+.......|...+..|...+++..+...+-..+....
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            33334556666678888889999988777777766554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.81  E-value=16  Score=34.41  Aligned_cols=119  Identities=11%  Similarity=-0.039  Sum_probs=80.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005139          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (712)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~  646 (712)
                      -+++.|..++|+......++.        .|..+.....|.++++-.|+++.|..-++.+.++        +|+......
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--------~p~~~~~a~   69 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS   69 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhhHHHH
Confidence            356789999999999888873        3444577778889999999999999999999998        887665433


Q ss_pred             HHHHH-HHHccchhhh-------CCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          647 NLAGT-YDAIGREEKL-------GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       647 ~La~~-~~~~g~~~~l-------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .+..+ ...+-+.+.+       ....|........-+......|+.++|. ..-..+++.-|.
T Consensus        70 ~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~  132 (273)
T 1zbp_A           70 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCcc
Confidence            32222 1122221111       1122333334444566667789999999 888889888765

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=85.14  E-value=24  Score=32.79  Aligned_cols=183  Identities=14%  Similarity=0.076  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      -+..+|.+.-+.++|++...+..++........    ..   -.+.|..+|-. .|....+...+......-...+....
T Consensus         6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt----~E---ERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~   78 (248)
T 3uzd_A            6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLS----NE---ERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKK   78 (248)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCC----HH---HHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHH
Confidence            345678888899999999998888776432211    11   12233333321 22222233322211111000111111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC--HHHHHHHHHHHHHHHHcC----------CHHHHHH
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE---NH--PAVASVFVRLADMYNRTG----------KLRESKS  495 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~--~~~~~~~~~la~~~~~~g----------~~~~A~~  495 (712)
                      ...+......+      -.+-...+...+.+.....-+   +.  ...+..+-..|..|...-          -.+.|..
T Consensus        79 ~~~i~~yr~ki------e~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~  152 (248)
T 3uzd_A           79 IEMVRAYREKI------EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEK  152 (248)
T ss_dssp             HHHHHHHHHHH------HHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------HHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence            11111000111      122233444445444433211   12  233344444566654321          1367888


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHH
Q 005139          496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  548 (712)
                      .|+.|..+....+ +..+|.......+.+..|+ -+++.++|..+.++|+.-.-
T Consensus       153 aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai  205 (248)
T 3uzd_A          153 AYSEAHEISKEHM-QPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI  205 (248)
T ss_dssp             HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999887655 3445554445555555555 48999999998888876543

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=84.93  E-value=11  Score=37.52  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          430 EVASVDCSIGDTYLSL---SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      ....++.+||.+-...   |+ ..++.+|.+|+...+..+...|   ...|..+|..+++.+++.+|+..+-.+-...+.
T Consensus       275 rYPmALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~  350 (550)
T 3u84_A          275 RYPMALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD  350 (550)
T ss_dssp             TCHHHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             hCchhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence            3345555666554432   22 2488999999999998875433   567888999999999999999999999888776


Q ss_pred             CC
Q 005139          507 PV  508 (712)
Q Consensus       507 ~~  508 (712)
                      ..
T Consensus       351 YN  352 (550)
T 3u84_A          351 YN  352 (550)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=82.61  E-value=18  Score=36.10  Aligned_cols=83  Identities=13%  Similarity=0.041  Sum_probs=60.4

Q ss_pred             ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          428 DAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      -.....++.+||.+-...-  ....++.+|++|+...+..+...+   ...|..+|-.+++.+++.+|+.++-++-....
T Consensus       258 l~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~  334 (489)
T 4gq4_A          258 LERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ  334 (489)
T ss_dssp             TTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             hhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence            3344555666666554322  223578899999999999885544   56788899999999999999999999998887


Q ss_pred             cCCCCCCC
Q 005139          506 KPVPGVPP  513 (712)
Q Consensus       506 ~~~~~~~~  513 (712)
                      .......+
T Consensus       335 ~YnY~reD  342 (489)
T 4gq4_A          335 DYNYCRED  342 (489)
T ss_dssp             TSCCCTTC
T ss_pred             hcccccch
Confidence            75433333

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=81.54  E-value=35  Score=31.99  Aligned_cols=182  Identities=14%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      .-+..++.+..+.++|++...+..++....  +..    ...   -.+.|..+|- ..|....+...+..........+.
T Consensus         9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL----t~E---ERnLLSvaYKNvig~rR~swRiissieqke~~k~~   81 (260)
T 1o9d_A            9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL----TVE---ERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN   81 (260)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC----CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC----CHH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence            445677888889999999999999988743  211    111   1223333332 112222233332221110010111


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHHHHcC----------CHHHHH
Q 005139          428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTG----------KLRESK  494 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g----------~~~~A~  494 (712)
                       ..    ...+..-|. ..--.+-...+...+.+.....-+  ..+ ..+..+-..|..|...-          -.+.|.
T Consensus        82 -~~----~~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~  155 (260)
T 1o9d_A           82 -EE----HVNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  155 (260)
T ss_dssp             -HH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             -HH----HHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence             11    111111111 111122334445555555443211  122 22333344455554321          135788


Q ss_pred             HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHH
Q 005139          495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKI  546 (712)
Q Consensus       495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  546 (712)
                      ..|+.|..+....+ ...+|.......+.+..|+. +++.++|..+.++|+.-
T Consensus       156 ~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          156 TAYKAAQDIATTEL-APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            89999999987554 44455555555555555554 79999999888877654

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.30  E-value=34  Score=31.60  Aligned_cols=58  Identities=16%  Similarity=0.022  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHH
Q 005139          490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYN  548 (712)
Q Consensus       490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  548 (712)
                      .+.|...|++|+.+....+ ...+|.......+.+..|+. .++.++|..+.++|+.-.-
T Consensus       146 ~e~a~~aY~~A~~iA~~~L-~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai  204 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI  204 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3578889999999987654 44455555555555555554 8999999998888876543

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=80.73  E-value=40  Score=36.66  Aligned_cols=84  Identities=7%  Similarity=-0.026  Sum_probs=43.8

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCC----------hhhHHHHHHHHHHHHHccc-hhhhCCCChhHHHHHHHHHHHH
Q 005139          611 VQRYSINEAVELFEEARSILEQECGPYH----------PDTLGVYSNLAGTYDAIGR-EEKLGTANPDVDDEKRRLAELL  679 (712)
Q Consensus       611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~----------p~~~~~~~~La~~~~~~g~-~~~l~~~~p~~~~~~~~la~~~  679 (712)
                      ...|+++.++.+..+++.-.-.......          .+....-..+...|...+. ...+....-+....+..+..++
T Consensus       467 ~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~  546 (661)
T 2qx5_A          467 QLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIR  546 (661)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHH
Confidence            3346777777777777654333221001          1233344455555544322 1122111223344456666666


Q ss_pred             --HHhccHHHHHHHHHHH
Q 005139          680 --KEAGRVRSRKAQSLET  695 (712)
Q Consensus       680 --~~~g~~~~A~~~~l~~  695 (712)
                        ...|+|+.|. +.+++
T Consensus       547 ~~~~~g~~~~AL-~~i~~  563 (661)
T 2qx5_A          547 ELYFNKQWQETL-SQMEL  563 (661)
T ss_dssp             HHHHTTCHHHHH-HHHHH
T ss_pred             HHHHcCCHHHHH-HHHHh
Confidence              7799999999 66665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	712
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-21
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-18
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-20
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-19
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-15
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-10
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-09
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.001
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.004

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 95.0 bits (234), Expect = 1e-21
 Identities = 43/366 (11%), Positives = 109/366 (29%), Gaps = 17/366 (4%)

Query: 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENS 327
             + A +  + G  +EA  + + ++E           +A       LG+     G+L  S
Sbjct: 15  NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA----TSVLGEVLHCKGELTRS 70

Query: 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387
           L       ++ +Q   +       +    +E          A +  + A  +  +     
Sbjct: 71  LALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 128

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
                   R+   +       + A      + + ++++ Q  +       +    L+   
Sbjct: 129 LPMHEFLVRIRAQLLWAWARLDEAEASA-RSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 187

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507
            D A     +           +   +++        +  TG    + ++  +  +     
Sbjct: 188 LDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246

Query: 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567
              +  +               + E E A  +L++  +    +    S +      +  +
Sbjct: 247 NHFLQGQWRNIAR-----AQILLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLLNQL 300

Query: 568 YYMLGNYSDSYDSFKNAISKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEA 626
           Y+  G  SD+     +A+      G        G A+ Q     +Q  ++ E  +    A
Sbjct: 301 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ--HRA 358

Query: 627 RSILEQ 632
           + IL +
Sbjct: 359 QRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 84.6 bits (207), Expect = 4e-18
 Identities = 39/333 (11%), Positives = 101/333 (30%), Gaps = 17/333 (5%)

Query: 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275
           +          +A+  I+ G+ P +A  LA  A +              ++   V+  + 
Sbjct: 7   EDTMHAEFNALRAQVAINDGN-PDEAERLAKLALEELP----PGWFYSRIVATSVLGEVL 61

Query: 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGL 335
              G+   ++ +++Q+ ++    +   +AL      +Q  +     G L+ +        
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYAL---WSLIQQSEILFAQGFLQTAWETQEKAF 118

Query: 336 EVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395
           ++  +   E  P      R  A+      +  EA+   +  +++         L+     
Sbjct: 119 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ--CLA 176

Query: 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455
            L+           A  +   L ++          +++ +      +        A    
Sbjct: 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236

Query: 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515
           +            N+  +   +  +A      G+   ++   E                +
Sbjct: 237 RHTAKPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSD 289

Query: 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548
           +   L  ++ +Y        A ++L  ALK+ N
Sbjct: 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 22/236 (9%), Positives = 51/236 (21%), Gaps = 10/236 (4%)

Query: 258 GKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317
            +        + + A +  +  + +EA       IE+    + Q+               
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377
             +                            +    +            + A  + +   
Sbjct: 186 GDLDNARSQLNRLEN-----LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240

Query: 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437
                N            R +       G+ E A   L   +    +    +++      
Sbjct: 241 KPEFANNHF----LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296

Query: 438 IGDTYLSLSRYDEAGFAYQKALT-AFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
           +   Y    R  +A      AL  A +T    +         +      +   L E
Sbjct: 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 5e-20
 Identities = 51/436 (11%), Positives = 120/436 (27%), Gaps = 53/436 (12%)

Query: 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNE 283
            ++ A     +GD  + A    ++  +            +    L ++++I+    + + 
Sbjct: 2   PMELAHREYQAGDF-EAAERHCMQLWRQEP---------DNTGVLLLLSSIHFQCRRLDR 51

Query: 284 AIPVLEQSIEI-PVIEEGQEH-ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
           +      +I+  P++ E   +                     L          + +   +
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           +   D          A  +   L    +     +      +      L+    +    + 
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

Query: 402 CETKGDHEAALEHLVLA-SMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
               G    A   + LA      A   D        ++G+       +D A  AY +   
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR--- 228

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520
                     P  A V   LA +Y   G +  +      A+ +                 
Sbjct: 229 -----ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP---------HFPDAY 274

Query: 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580
            ++++  +    + +A      AL++        +        +  +    GN  ++   
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN-------NLANIKREQGNIEEAVRL 327

Query: 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPD 640
           ++ A+                A + +     Q+  + EA+  ++EA  I         P 
Sbjct: 328 YRKALEVFPEFAA--------AHSNLASVLQQQGKLQEALMHYKEAIRI--------SPT 371

Query: 641 TLGVYSNLAGTYDAIG 656
               YSN+  T   + 
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 4e-19
 Identities = 50/396 (12%), Positives = 110/396 (27%), Gaps = 48/396 (12%)

Query: 200 RKGKLHKGQDVSEAGLDK-PGLGPLLLKQARELISSGDNPQKALELALRAAKS------- 251
           + G     +        + P    +LL  +           ++   +  A K        
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQNPLLAEA 69

Query: 252 -FEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAG 310
              +G   K   +L   +            + +    L  ++      EG   A      
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

Query: 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370
           +                 +      +       ET P        L        +   A 
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189

Query: 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430
              + A+ +  +               +G + +     + A+         + A      
Sbjct: 190 HHFEKAVTLDPNF--------LDAYINLGNVLKEARIFDRAVAAY------LRALSLSPN 235

Query: 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL 490
            A V  ++   Y      D A   Y++A+        E  P     +  LA+     G +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAI--------ELQPHFPDAYCNLANALKEKGSV 287

Query: 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
            E++     ALR+       +          ++++I      +E+A++L +KAL+++ + 
Sbjct: 288 AEAEDCYNTALRLCPTHADSL---------NNLANIKREQGNIEEAVRLYRKALEVFPE- 337

Query: 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586
                  A   + +  +    G   ++   +K AI 
Sbjct: 338 ------FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 54/388 (13%), Positives = 111/388 (28%), Gaps = 47/388 (12%)

Query: 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA 369
           G M+L       G  E +                  +P        L+  H Q  +   +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRS 52

Query: 370 QKFCQMALDIHKDNGS------------PASLEEAADRRLMGLICETKGDHEAALEHLVL 417
             F  +A+  +                     E     R    +     D    L   ++
Sbjct: 53  AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112

Query: 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477
           A+  M    Q    A           S            +   A      E  P  A  +
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172

Query: 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537
             L  ++N  G++  +  + E A+ +                  ++ ++ +     ++A+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP---------NFLDAYINLGNVLKEARIFDRAV 223

Query: 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597
               +AL +  +        A +   +  +YY  G    + D+++ AI       +    
Sbjct: 224 AAYLRALSLSPN-------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---- 272

Query: 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD-AIG 656
               A   +  A  ++ S+ EA + +  A  +          + L       G  + A+ 
Sbjct: 273 ----AYCNLANALKEKGSVAEAEDCYNTA--LRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 657 REEKLGTANPDVDDEKRRLAELLKEAGR 684
              K     P+       LA +L++ G+
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGK 354

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 29/236 (12%), Positives = 65/236 (27%), Gaps = 10/236 (4%)

Query: 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKF 372
           Q    Y +  +L  +   +    + QK+     +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 373 CQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432
            + A+ I    G            L  ++     D+  A++   LA      +   A   
Sbjct: 100 LENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRE 492
                  D      +Y EA   Y K + +   N+  +  ++   F++             
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVA 217

Query: 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKI 546
           +    +          P       ++ L  +       +  +L +  K     +++
Sbjct: 218 AARTLQEGQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (135), Expect = 3e-09
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 6/200 (3%)

Query: 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489
           E A +       Y      + AG ++ KA    K  K  N     + +V     +   G 
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQK--KAGNEDEAGNTYVEAYKCFKSGGN 92

Query: 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549
              +    ENA++I+               L ++  +   +++  +AI   + A + Y  
Sbjct: 93  SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI--LENDLHDYAKAIDCYELAGEWYA- 149

Query: 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609
                +       +   +  + G Y ++ D +   I         + +       + GL 
Sbjct: 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD-YFLKKGLC 208

Query: 610 CVQRYSINEAVELFEEARSI 629
            +       A    +E +S 
Sbjct: 209 QLAATDAVAAARTLQEGQSE 228

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 7/171 (4%)

Query: 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573
           EE A      ++IY    EL  A     KA        G +        +    +   GN
Sbjct: 34  EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGN 92

Query: 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633
             ++ DS +NAI      G +             +     +   +A++ +E A     Q+
Sbjct: 93  SVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

Query: 634 CGPYHPDT----LGVYSNLAGTYD-AIGREEKLGTANPDVDDEKRRLAELL 679
                 +           L G Y  A     KL  ++      +  L +  
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-10
 Identities = 28/271 (10%), Positives = 70/271 (25%), Gaps = 52/271 (19%)

Query: 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341
            ++   L Q+  +       +   +     +   + +     L+          ++ +++
Sbjct: 3   LQSAQYLRQAEVLK-----ADMTDS----KLGPAEVWTSRQALQ----------DLYQKM 43

Query: 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI 401
           L  TD           E  +    F       Q      K+  +P   E  A   L   +
Sbjct: 44  L-VTDLEYALD--KKVEQDLWNHAFKNQITTLQ---GQAKNRANPNRSEVQA--NLSLFL 95

Query: 402 CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461
               G +   L+ L          + D         +G      +           + + 
Sbjct: 96  EAASGFYTQLLQEL------CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS- 148

Query: 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521
                           V L D+     +  +++SY  +A ++                  
Sbjct: 149 ---------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP---------SNGQPYN 190

Query: 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPG 552
            ++ +  S  +    I    +++ +    P 
Sbjct: 191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 15/148 (10%), Positives = 38/148 (25%), Gaps = 35/148 (23%)

Query: 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD--------------- 579
           Q+ + L++A  +       ++ +   +     ++       D Y                
Sbjct: 4   QSAQYLRQAEVL-------KADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKV 56

Query: 580 -------SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632
                  +FKN I+ L+   + ++       N+  +       +  A   + +    L  
Sbjct: 57  EQDLWNHAFKNQITTLQGQAKNRA-----NPNRSEVQANLSLFLEAASGFYTQLLQELCT 111

Query: 633 ECGPYHPDTLGVYSNLAGTYDAIGREEK 660
                        S L    +       
Sbjct: 112 VFNV-DLPCRVKSSQLGIISNKQTHTSA 138

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 48/315 (15%), Positives = 90/315 (28%), Gaps = 50/315 (15%)

Query: 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458
           GL    +GD   A+     A        QD +       +G T     +   A  A ++ 
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAV------QQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

Query: 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518
           L     N+        S                       + LR        V P E  +
Sbjct: 80  LELKPDNQTALMALAVSFTNESLQRQACE--------ILRDWLRYTPAYAHLVTPAEEGA 131

Query: 519 GLTDVSSIY------ESMNELEQAIKLLQKALKIYND------------APGQQSTVAGI 560
           G   +           S +   +  +L   A+++                          
Sbjct: 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF---------FGVALNQMGLACV 611
                    +  N    ++     ++      E  +A+         +  +   +G++C+
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251

Query: 612 QRYSINEAVELFEEARSILEQECGPYHPD---TLGVYSNLAGTYDAIGREEKLGTANPDV 668
              +  EAVE F EA ++  +  GP       +  ++S L      +G+ +  G A    
Sbjct: 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA---- 307

Query: 669 DDEKRRLAELLKEAG 683
             + R L+ LL   G
Sbjct: 308 --DARDLSTLLTMFG 320

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 36/322 (11%), Positives = 86/322 (26%), Gaps = 35/322 (10%)

Query: 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCY 331
                  G    A+ + E +++        +H  A       LG T A   Q   ++   
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEA----WQYLGTTQAENEQELLAISAL 76

Query: 332 TTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391
              LE++          +  +    +          +  ++      +       A    
Sbjct: 77  RRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 135

Query: 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451
               + +     +        E  + A    +  D  +    V C +G  +     YD+A
Sbjct: 136 LGPSKRILGSLLSDSLFLEVKELFLAA----VRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511
              +  AL+    +    +                  +  E+ +    AL +        
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLG--------ATLANGNQSEEAVAAYRRALELQPG----- 238

Query: 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----MGVM 567
                     ++     ++    +A++   +AL +   + G +     +       + + 
Sbjct: 239 ----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294

Query: 568 YYMLGNYSDSYDSFKNAISKLR 589
             MLG       +    +S L 
Sbjct: 295 LSMLGQSDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 28/204 (13%)

Query: 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325
                I     S   + E   +   ++ +       +           LG  + + G+ +
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV-------QCGLGVLFNLSGEYD 189

Query: 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385
            ++ C+T  L V+                 L        Q  EA    + AL++      
Sbjct: 190 KAVDCFTAALSVRPND--------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-- 239

Query: 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLA-----SMTMIANDQDAEVASVDCSIGD 440
                    R  +G+ C   G H  A+EH + A            +  A   ++  ++  
Sbjct: 240 ------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293

Query: 441 TYLSLSRYDEAGFAYQKALTAFKT 464
               L + D  G A  + L+   T
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLLT 317

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM--QLGDTYAMLG 322
           +   + +     +LG + EA+    +++ +     G        + ++   L    +MLG
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 323 QLENSLMCYTTGLEVQKQVLG 343
           Q +         L     + G
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 22/141 (15%)

Query: 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514
           ++ AL AF   +  +    + +   +  MY     + E++     ++   +         
Sbjct: 21  WKGALDAFSAVQDPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76

Query: 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ---------MG 565
            +         +Y    + + AIK L++AL            + G++ +         + 
Sbjct: 77  GM---------LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 566 VMYYMLGNYSDSYDSFKNAIS 586
            MY     +  + +    A S
Sbjct: 128 FMYAKKEEWKKAEEQLALATS 148

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR 447
           SL EA      G++   K D + AL+            D  + +     +IG  Y  L  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAF------SAVQDPHSRIC---FNIGCMYTILKN 51

Query: 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI---- 503
             EA  A+ +++             +A  + +   +Y +T K   +    + AL      
Sbjct: 52  MTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

Query: 504 ----YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
               Y+              L +++ +Y    E ++A + L  A  + ++ 
Sbjct: 104 QLIDYKILGLQFKLFACEV-LYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 28/166 (16%)

Query: 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320
           SL   + L     +      +  A+       +         H+         +G  Y +
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRI----CFNIGCMYTI 48

Query: 321 LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIH 380
           L  +  +   +T  +   K         +          + Q  ++  A K  + AL   
Sbjct: 49  LKNMTEAEKAFTRSINRDKH--------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100

Query: 381 KDNGSPASLEEAADRRL--------MGLICETKGDHEAALEHLVLA 418
           + N            +L        +  +   K + + A E L LA
Sbjct: 101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542
           ++N      + K + + AL  +       P   I   +     +Y  +  + +A K   +
Sbjct: 8   LWNEGVLAADKKDW-KGALDAFSAVQD--PHSRICFNI---GCMYTILKNMTEAEKAFTR 61

Query: 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR--------AIGER 594
           ++                  Q G++YY    Y  +    K A+ +LR         +G +
Sbjct: 62  SINRDKHLAVAYF-------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114

Query: 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629
              F    L  +     ++    +A E    A S+
Sbjct: 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497
           +G+       +D A   Y KA         E  P   +     A +Y   G   + +  C
Sbjct: 10  LGNDAYKKKDFDTALKHYDKA--------KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550
           E A+ +  +          A     + + Y    + + AI    K+L  +   
Sbjct: 62  EKAIEVGRENREDYRQIAKAY--ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 24/149 (16%)

Query: 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD 449
           ++A   + +G     K D + AL+H         A + D    +   +    Y     Y+
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHY------DKAKELDPTNMTYITNQAAVYFEKGDYN 55

Query: 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509
           +     +KA+   + N  E++  +A  + R+ + Y +  K +++  +   +L  +  P  
Sbjct: 56  KCRELCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-- 112

Query: 510 GVPPEEIASGLTDVSSIYESMNELEQAIK 538
                           + +   + E+ +K
Sbjct: 113 ---------------DVLKKCQQAEKILK 126

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 8/236 (3%)

Query: 230 ELISSGDNPQKALELAL-RAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288
           E+++    P    E+ L R  +     A      E    L+    +Y SLG    A    
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDD--ERAQLLYERGVLYDSLGLRALARNDF 60

Query: 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348
            Q++ I        + L  +       D           L        + + +      R
Sbjct: 61  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120

Query: 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDH 408
                  L   +           +  +A     +  +   L++  ++           + 
Sbjct: 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 180

Query: 409 EAALEHLVLASMTMIANDQDA-----EVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459
                        + A+  D       ++  +  +G  YLSL   D A   ++ A+
Sbjct: 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 28/326 (8%), Positives = 72/326 (22%), Gaps = 54/326 (16%)

Query: 224 LLKQARELISSGDNPQKALEL---ALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ 280
             +   +   +G+  +  LEL    L A   F    N +   E++  L    +   S   
Sbjct: 31  ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR--EVLQHLETEKSPEESAAL 88

Query: 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340
               +  LE  + +             +          + L +       +   LE+  +
Sbjct: 89  VKAELGFLESCLRVNPKS---------YGTWHHRCWLLSRLPE-----PNWARELELCAR 134

Query: 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL 400
            L   +            A   A+  +E   F    +  +  N S               
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS--------WHYRSC 186

Query: 401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460
           +         +     L    ++              +          D++ + Y +   
Sbjct: 187 LLPQLHPQPDSGPQGRLPENVLLKE----------LELVQNAFFTDPNDQSAWFYHR--- 233

Query: 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520
                                +         ES    +      +              +
Sbjct: 234 -----WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW---------CLLTI 279

Query: 521 TDVSSIYESMNELEQAIKLLQKALKI 546
             +    + +   ++ ++       +
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAV 305

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496
           ++ +  +S+    +    +Q               A  SV       Y            
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEK------------AAGSVSKSTQFEYAWCLVRTRYNDD 51

Query: 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556
               + + E+ +P    EE    +  ++     + E E+A+K ++  L+        +  
Sbjct: 52  IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111

Query: 557 VAGIEAQMG 565
              I+  M 
Sbjct: 112 ERLIDKAMK 120

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE 498
           G+  LS+   D+A   Y +A+     N        A+   +           +      +
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69

Query: 499 NALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558
                  K                  +  E +N  E+A +  ++ LK   + P  +  + 
Sbjct: 70  WGKGYSRKA-----------------AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

Query: 559 GIEAQ 563
            +EA+
Sbjct: 113 NMEAR 117

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 27/182 (14%), Positives = 53/182 (29%), Gaps = 32/182 (17%)

Query: 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIP 286
           Q +  +S G   Q+ALEL + A K+        P  +          + C  G +  A  
Sbjct: 2   QWKNALSEGQ-LQQALELLIEAIKA-------SP--KDASLRSSFIELLCIDGDFERADE 51

Query: 287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346
            L QSI++                  +     + L  L  +        +         +
Sbjct: 52  QLMQSIKL----------------FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

Query: 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA-----DRRLMGLI 401
                         + +  + +  +      ++ ++ G  A+    +     D RL G  
Sbjct: 96  NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRL-GGY 154

Query: 402 CE 403
            E
Sbjct: 155 IE 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	712
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.79
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.71
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.7
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.69
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.67
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.38
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.28
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.25
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.17
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.12
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.12
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.09
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.07
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.94
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.79
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.73
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.36
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.23
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.7
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.89
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.84
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.72
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	92.02
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.87
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.92
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	84.89
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.34
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.07
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	83.04
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.23
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	80.57

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-31  Score=278.25  Aligned_cols=380  Identities=18%  Similarity=0.196  Sum_probs=227.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccc
Q 005139          224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH  303 (712)
Q Consensus       224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  303 (712)
                      ++.+|..++..|+ |++|+..|+++++..         |....++..+|.+|...|++++|+.+|++++++.     |.+
T Consensus         2 ll~la~~~~~~G~-~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~   66 (388)
T d1w3ba_           2 PMELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL   66 (388)
T ss_dssp             CCTHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             hHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Confidence            3568899999997 999999999999763         4446788999999999999999999999999886     444


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       304 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      +    .++..+|.+|...|++++|+..+..++..        .+.........+......+.+..+..............
T Consensus        67 ~----~a~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (388)
T d1w3ba_          67 A----EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL  134 (388)
T ss_dssp             H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred             H----HHHHHHHHHhhhhcccccccccccccccc--------cccccccccccccccccccccccccccccccccccccc
Confidence            3    35899999999999999999999999887        34444445555555555555555554444433322111


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          384 GSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       384 ~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                      .        ......+......+....+...+.+.+.      ..+..+.++..+|.++...|++++|..++++++.+  
T Consensus       135 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--  198 (388)
T d1w3ba_         135 Y--------CVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--  198 (388)
T ss_dssp             T--------HHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred             c--------cccccccccccccchhhhhHHHHHHhhc------cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--
Confidence            1        1233344444455555555555544442      22333445555555555555555555555555555  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA  543 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (712)
                            +|....++..+|.++...|++++|+..++++..+.         +.....+..+|.++...|++++|+.+|+++
T Consensus       199 ------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         199 ------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---------PNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             ------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  44445555555555555555555555555555541         122344555555555555555555555555


Q ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139          544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF  623 (712)
Q Consensus       544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  623 (712)
                      +++.+..       ..++..+|.++...|++++|+..|++++...        +....++..+|.++...|++++|+.+|
T Consensus       264 l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~  328 (388)
T d1w3ba_         264 IELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--------CccchhhhHHHHHHHHCCCHHHHHHHH
Confidence            5543222       2345555555555555555555555554431        112244555555555555555555555


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhcc
Q 005139          624 EEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGR  684 (712)
Q Consensus       624 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~  684 (712)
                      ++++++        +|+...++.++|.+|..+|+       .+.....+|+++.++.+||.+|.++||
T Consensus       329 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         329 RKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            555554        55555555555555555555       223334455555555555555555553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.6e-31  Score=276.62  Aligned_cols=383  Identities=17%  Similarity=0.210  Sum_probs=327.3

Q ss_pred             CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005139          194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA  273 (712)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~  273 (712)
                      +......|+|.+|++.+..+...+|....++..+|.+++..|+ +++|+.+|++++++.         |..+.++..+|.
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~---------p~~~~a~~~l~~   75 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQN---------PLLAEAYSNLGN   75 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Confidence            3445677899999988888888899999999999999999997 999999999999864         445778999999


Q ss_pred             HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139          274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC  353 (712)
Q Consensus       274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  353 (712)
                      +|..+|++++|+..+..++...     +....    .....+......+.+..+..........        .+......
T Consensus        76 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  138 (388)
T d1w3ba_          76 VYKERGQLQEAIEHYRHALRLK-----PDFID----GYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVR  138 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-----TTCHH----HHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHH
T ss_pred             Hhhhhccccccccccccccccc-----ccccc----cccccccccccccccccccccccccccc--------cccccccc
Confidence            9999999999999999998875     32222    3566677777777777777777666555        34444566


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139          354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS  433 (712)
Q Consensus       354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  433 (712)
                      ...+......+....+...+.+.+...+..        +.++..+|.++...|++++|..++.+++..      .|....
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~  204 (388)
T d1w3ba_         139 SDLGNLLKALGRLEEAKACYLKAIETQPNF--------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLD  204 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             ccccccccccchhhhhHHHHHHhhccCcch--------hHHHHhhcccccccCcHHHHHHHHHHHHHh------CcccHH
Confidence            677788888999999999998888765433        447889999999999999999999999853      455677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ++..+|.++...|++++|+..+++++.+        .+.....+..+|.++...|++++|+.+|++++++         .
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~  267 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---------Q  267 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------C
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------C
Confidence            8999999999999999999999999988        6777888999999999999999999999999988         3


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE  593 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  593 (712)
                      |....++..+|.++...|++++|+..+++++...+..       ..++..+|.++...|++++|+.+|++++++      
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------  334 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEV------  334 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-------chhhhHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            4457789999999999999999999999998875543       467889999999999999999999999874      


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       594 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                        .+....++..+|.+|...|++++|+.+|++++++        +|+...++.+||.+|..+|+
T Consensus       335 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence              2334578999999999999999999999999998        99999999999999999886

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.4e-21  Score=200.77  Aligned_cols=345  Identities=11%  Similarity=0.004  Sum_probs=283.5

Q ss_pred             HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139          264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG  343 (712)
Q Consensus       264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  343 (712)
                      .+......|.+++..|++++|+.+|++++...+.    ..+...+.++..+|.+|...|++++|+..|++++.+....  
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~----~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--   84 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   84 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--
Confidence            4566677899999999999999999999987632    2223345678999999999999999999999999987663  


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI  423 (712)
Q Consensus       344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  423 (712)
                      .+.+....++..++.++...|++..|...+.+++.+.+..........+.++..+|.++...|+++.+..++.+++....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            33456778899999999999999999999999999999888777777788889999999999999999999999987665


Q ss_pred             hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ... ......++..++..+...+++..+...+.++..+...... ..+....++..++.++...|++++|..++.+++.+
T Consensus       165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  242 (366)
T d1hz4a_         165 SYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  242 (366)
T ss_dssp             TSC-GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             hhh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            543 3445677888999999999999999999999998776542 24556778888999999999999999999988765


Q ss_pred             HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN  583 (712)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  583 (712)
                      ..     ...+.....+..+|.++...|++++|+.++++++...... +..+....++..+|.+|..+|++++|+.++++
T Consensus       243 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         243 EF-----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             CC-----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cc-----ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            32     2345567778899999999999999999999999998876 66667778899999999999999999999999


Q ss_pred             HHHHHHHhCCCCChH-HHHHHHHHHHHHHHhCCHHHHHHH
Q 005139          584 AISKLRAIGERKSAF-FGVALNQMGLACVQRYSINEAVEL  622 (712)
Q Consensus       584 al~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~  622 (712)
                      |+.+....+...... ....+..+...+...++.+++...
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999988776542111 123444455556667777777653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-22  Score=204.01  Aligned_cols=283  Identities=15%  Similarity=0.110  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      .+..|..++..|++++|+..|+++++..     |.++.    +|..+|.++...|++++|+.+|.+++++        +|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHME----AWQYLGTTQAENEQELLAISALRRCLEL--------KP   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCChHHHHHHHHhhhcc--------cc
Confidence            3568999999999999999999999886     55443    5999999999999999999999999998        67


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH-HHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL-EEA------ADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~a------~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                      .....+..+|.+|...|++++|+..+++++.+.+........ ...      .........+...+.+.+|+..|.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999876543211100 000      0111222344566778899999998875


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA  500 (712)
Q Consensus       421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  500 (712)
                      ..   + ....+.++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|+++
T Consensus       165 ~~---p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         165 LD---P-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HS---T-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hh---h-cccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHH
Confidence            42   1 1223567889999999999999999999999998        7888899999999999999999999999999


Q ss_pred             HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC----cHHHHHHHHHHHHHHcCCHHH
Q 005139          501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS----TVAGIEAQMGVMYYMLGNYSD  576 (712)
Q Consensus       501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~  576 (712)
                      +++         .|..+.++..+|.+|...|++++|+.+|++|+++.++..+...    ....++..++.++...++.+.
T Consensus       233 l~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         233 LEL---------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHH---------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            998         3445788999999999999999999999999999987644221    223456778888888888877


Q ss_pred             HHHHHHHHHHHH
Q 005139          577 SYDSFKNAISKL  588 (712)
Q Consensus       577 A~~~~~~al~~~  588 (712)
                      +.....+.+..+
T Consensus       304 ~~~~~~~~l~~l  315 (323)
T d1fcha_         304 YGAADARDLSTL  315 (323)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHHhCHHHH
Confidence            766666555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.5e-21  Score=196.90  Aligned_cols=343  Identities=12%  Similarity=0.048  Sum_probs=277.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE  298 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~  298 (712)
                      ..+.+....|.+++..|+ +++|+.+|++++....    ..+.+....++..+|.+|...|++++|+..|++++.+....
T Consensus        10 ~~ae~~~lrA~~~~~~g~-~~~A~~~~~~aL~~~~----~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGN-PDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCc----CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            345677778999999997 9999999999997641    22334556788999999999999999999999999886542


Q ss_pred             hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD  378 (712)
Q Consensus       299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  378 (712)
                         ......+.++..++.++...|++..|...+.+++.+.........+....++..+|.++...|+++.|..++.+++.
T Consensus        85 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~  161 (366)
T d1hz4a_          85 ---DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE  161 (366)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence               22333556789999999999999999999999999988877776777888899999999999999999999999998


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139          379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD-AEVASVDCSIGDTYLSLSRYDEAGFAYQK  457 (712)
Q Consensus       379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  457 (712)
                      ..+.....   ....++..++.++...+++..+...+.++.......... +....++..++.++...|++++|..++++
T Consensus       162 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  238 (366)
T d1hz4a_         162 VLSSYQPQ---QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH  238 (366)
T ss_dssp             HTTTSCGG---GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             Hhhhhhhh---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            87665432   234577888999999999999999999998877765554 44566788899999999999999999998


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005139          458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI  537 (712)
Q Consensus       458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (712)
                      ++.+.    ..+.+.....+..+|.++...|++++|..++++++.....   ....+....++..+|.+|..+|++++|+
T Consensus       239 ~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         239 TAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             SCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---cccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            87652    2235556778889999999999999999999999998876   3456778899999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCc---HHHHHHHHHHHHHHcCCHHHHHHH
Q 005139          538 KLLQKALKIYNDAPGQQST---VAGIEAQMGVMYYMLGNYSDSYDS  580 (712)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~  580 (712)
                      .++++|+.+.... +....   ....+..+...+...++.+++...
T Consensus       312 ~~l~~Al~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         312 RVLLDALKLANRT-GFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHH-CCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHhhhc-CcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            9999999998765 33221   122334444555566777766543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-22  Score=203.52  Aligned_cols=287  Identities=17%  Similarity=0.111  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005139          311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE  390 (712)
Q Consensus       311 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (712)
                      .+..|..+...|++++|+..|+++++.        +|....+|..+|.++...|++++|+.++.+++++.+..       
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-------   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc-------
Confidence            578999999999999999999999988        78889999999999999999999999999999986543       


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---hhHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD---AEVA------SVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (712)
                       ...+..+|.+|...|++++|+..+.+++.........   ....      .........+...+.+.+|+..|.+++.+
T Consensus        87 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          87 -QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence             3478999999999999999999999987543211100   0000      11112223345567788999999999887


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                      ..      ....+.++..+|.++...|++++|+.+|++++..         .|....++..+|.+|...|++++|+.+|+
T Consensus       166 ~p------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         166 DP------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             ST------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hh------cccccccchhhHHHHHHHHHHhhhhccccccccc---------ccccccchhhhhhcccccccchhHHHHHH
Confidence            11      1123568889999999999999999999999998         34457889999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---CChHHHHHHHHHHHHHHHhCCHHH
Q 005139          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINE  618 (712)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~  618 (712)
                      +++++.+..       ..++..+|.+|...|++++|+.+|++|+++.......   .......++..++.++..+|+.+.
T Consensus       231 ~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         231 RALELQPGY-------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHhhcc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            999985443       4689999999999999999999999999986643221   111123467778888888898887


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 005139          619 AVELFEEARSILEQECG  635 (712)
Q Consensus       619 A~~~~~~al~~~~~~~~  635 (712)
                      +.....+.+..+.+.++
T Consensus       304 ~~~~~~~~l~~l~~~~~  320 (323)
T d1fcha_         304 YGAADARDLSTLLTMFG  320 (323)
T ss_dssp             HHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHhCHHHHHHHhC
Confidence            77777777766655554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.9e-18  Score=169.92  Aligned_cols=262  Identities=7%  Similarity=-0.012  Sum_probs=214.7

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh
Q 005139          346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-DHEAALEHLVLASMTMIA  424 (712)
Q Consensus       346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  424 (712)
                      +|....++..+|.++...+.+++|+.++++++++.|..        ..+|+.+|.++...| ++++|+.++.+++.    
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~--------~~a~~~r~~~l~~l~~~~~eal~~~~~al~----  106 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE----  106 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC--------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----
Confidence            57889999999999999999999999999999997665        458999999999987 59999999999984    


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY  504 (712)
Q Consensus       425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  504 (712)
                        ..|....++.++|.++..+|++++|+.++.+++++        +|....+|.++|.++...|++++|+.+|++++++ 
T Consensus       107 --~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~-  175 (315)
T d2h6fa1         107 --EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-  175 (315)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred             --HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence              46777899999999999999999999999999999        8889999999999999999999999999999999 


Q ss_pred             hcCCCCCCChhHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 005139          505 EKPVPGVPPEEIASGLTDVSSIYESMNE------LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY  578 (712)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  578 (712)
                              +|....+|.++|.++...+.      +++|+..+.+++.+.+..       ..++..++.++... ...++.
T Consensus       176 --------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-------~~~~~~l~~ll~~~-~~~~~~  239 (315)
T d2h6fa1         176 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDR-GLSKYP  239 (315)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTTT-CGGGCH
T ss_pred             --------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-------hHHHHHHHHHHHhc-ChHHHH
Confidence                    55567889999999887765      689999999999987655       35778888876544 468888


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139          579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       579 ~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  652 (712)
                      ..+++++.+..    ...  ...++..++.+|..  .++.+.+...+.+++.++.......+|-....|..++..+
T Consensus       240 ~~~~~~~~l~~----~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l  309 (315)
T d2h6fa1         240 NLLNQLLDLQP----SHS--SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL  309 (315)
T ss_dssp             HHHHHHHHHTT----TCC--CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC----CcC--CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            88888877522    111  12456666776654  3677778888888888876654444666555565555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.5e-18  Score=168.37  Aligned_cols=259  Identities=12%  Similarity=0.028  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCC
Q 005139          307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~  385 (712)
                      ...++..+|.++...+.+++|+..+.+++++        +|....+|.++|.++...| ++++|+.++++++.+.++.  
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~--  111 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--  111 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh--
Confidence            4567889999999999999999999999999        8999999999999999987 5999999999999998665  


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139          386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN  465 (712)
Q Consensus       386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  465 (712)
                            ..++..+|.++..+|++++|+.++.+++.      .+|....++.++|.++...|++++|+.++++++++    
T Consensus       112 ------~~a~~~~~~~~~~l~~~~eAl~~~~kal~------~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~----  175 (315)
T d2h6fa1         112 ------YQVWHHRRVLVEWLRDPSQELEFIADILN------QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----  175 (315)
T ss_dssp             ------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----
T ss_pred             ------hhHHHHHhHHHHhhccHHHHHHHHhhhhh------hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence                  45899999999999999999999999985      46666789999999999999999999999999999    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHH
Q 005139          466 KGENHPAVASVFVRLADMYNRTGK------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL  539 (712)
Q Consensus       466 ~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (712)
                          +|....+|.++|.++...+.      +++|+.++.+++.+         .|....++..++.++...| ..++...
T Consensus       176 ----~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~---------~P~~~~~~~~l~~ll~~~~-~~~~~~~  241 (315)
T d2h6fa1         176 ----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---------VPHNESAWNYLKGILQDRG-LSKYPNL  241 (315)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHTTTC-GGGCHHH
T ss_pred             ----CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh---------CCCchHHHHHHHHHHHhcC-hHHHHHH
Confidence                88889999999999988876      68999999999999         4455778889998876554 5888899


Q ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 005139          540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC  610 (712)
Q Consensus       540 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~  610 (712)
                      +++++.+.+...     ...++..++.+|..  .++.+.+...+++++.++........+.....|..++..+
T Consensus       242 ~~~~~~l~~~~~-----~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l  309 (315)
T d2h6fa1         242 LNQLLDLQPSHS-----SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL  309 (315)
T ss_dssp             HHHHHHHTTTCC-----CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcC-----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999988755431     12355566776654  3677788899999988876654333333334455555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5e-17  Score=161.40  Aligned_cols=241  Identities=10%  Similarity=0.028  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 005139          395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA  474 (712)
Q Consensus       395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  474 (712)
                      |...|.+|...|+|++|+++|.+++.+....++.+..+.++.++|.+|..+|++++|+.+|++++.+.....  +.....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~  117 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--cchhHH
Confidence            445578889999999999999999999998888899999999999999999999999999999999988864  355667


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC
Q 005139          475 SVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (712)
Q Consensus       475 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (712)
                      .++..+|.+|.. .|++++|+.+|++++.+...   ....+....++..+|.++..+|+|++|+.+|++++...+.....
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~---~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh---cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            889999999866 69999999999999999876   33456678889999999999999999999999999987766444


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHH
Q 005139          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSILE  631 (712)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~  631 (712)
                      .......+..++.++...|++..|...+++++.+........   ....+..+..++..  .+.+.+|+..|.++.++  
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr---e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l--  269 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL--  269 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC--
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--
Confidence            556667788899999999999999999999987654332211   12345556666554  34688888888766655  


Q ss_pred             HhcCCCChhhHHHHHHHHHH
Q 005139          632 QECGPYHPDTLGVYSNLAGT  651 (712)
Q Consensus       632 ~~~~~~~p~~~~~~~~La~~  651 (712)
                            +|.....+..+-..
T Consensus       270 ------D~~~~~~L~~~k~~  283 (290)
T d1qqea_         270 ------DKWKITILNKIKES  283 (290)
T ss_dssp             ------CHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHh
Confidence                  66555555444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.2e-16  Score=153.93  Aligned_cols=224  Identities=13%  Similarity=0.024  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005139          238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT  317 (712)
Q Consensus       238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~  317 (712)
                      .+.|+..+.+++...     ...++..+.+++.+|.+|...|++++|+..|++++.+.     |+++.    +++.+|.+
T Consensus        15 ~e~al~~~~e~l~~~-----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p~~~~----a~~~lg~~   80 (259)
T d1xnfa_          15 QEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPE----VFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHH----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCHH----HHhhhchH
Confidence            455555566554321     22346788999999999999999999999999999986     55554    59999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139          318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL  397 (712)
Q Consensus       318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~  397 (712)
                      |..+|++++|+..|++++++        +|....++..+|.++...|++++|+..+++++++.+..        ......
T Consensus        81 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~  144 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND--------PFRSLW  144 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc--------HHHHHH
Confidence            99999999999999999998        67788899999999999999999999999999886532        123455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139          398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVF  477 (712)
Q Consensus       398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  477 (712)
                      ++.++...+..+.+........   ......+........++. ....+.++.+...+..+...        .+....++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  212 (259)
T d1xnfa_         145 LYLAEQKLDEKQAKEVLKQHFE---KSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETN  212 (259)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHH---HSCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHhh---ccchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHH
Confidence            6666666666555444433322   111222222211111111 11223344455555555554        56677899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          478 VRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       478 ~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      +.+|.+|...|++++|+.+|++++..
T Consensus       213 ~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         213 FYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.6e-15  Score=150.30  Aligned_cols=226  Identities=14%  Similarity=0.075  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEV  431 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  431 (712)
                      .|...|.+|...++|++|+.+|.+++++......  ....+.++..+|.+|...|++++|+.+|++++.+....+.....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~--~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            3444577888999999999999999999988764  35667899999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139          432 ASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       432 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      ..++..+|.+|.. .|++++|+.+|++++++.....  ..+....++..+|.++..+|+|++|+.+|++++......  .
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~--~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--R  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--T
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc--h
Confidence            9999999999866 6999999999999999987764  245667889999999999999999999999999986553  2


Q ss_pred             CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005139          511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNAI  585 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al  585 (712)
                      .........+..++.++...|++..|...+++++.+.+.....  .....+..+..++..  .+.+.+|+..|.++.
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s--re~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            2334456678889999999999999999999998887654221  112345556666554  345788888776544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.4e-17  Score=167.58  Aligned_cols=276  Identities=9%  Similarity=-0.059  Sum_probs=217.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHhc
Q 005139          314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----------ALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       314 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~  383 (712)
                      +.......+..++|+.++++++++        +|....+|...+.++..          .|++++|+.++++++...++.
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~  106 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  106 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            333333344458999999999998        67777777666655544          445889999999999876554


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          384 GSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (712)
Q Consensus       384 ~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (712)
                      .        .++..+|.++...+  ++++|+..+.+++..     ++......+..+|.++...+.+++|+.++++++.+
T Consensus       107 ~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         107 Y--------GTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             H--------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             H--------HHHHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence            3        36788888877766  489999999999853     23333344567889999999999999999999998


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ  541 (712)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (712)
                              +|....+|..+|.++..+|++++|+..+.+++.+...         .    ..+...+...+..++|...+.
T Consensus       174 --------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~----~~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK---------E----LELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH---------H----HHHHHHHHHHCSSCSHHHHHH
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH---------H----HHHHHHHHHhcchhHHHHHHH
Confidence                    8888999999999999999999999999888888433         2    223344566778888999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005139          542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE  621 (712)
Q Consensus       542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  621 (712)
                      +++...+....       .+..++.++...+++.+|+..+.+++..        .+....++..+|.++...|++++|+.
T Consensus       233 ~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~  297 (334)
T d1dcea1         233 RWLLGRAEPLF-------RCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQ  297 (334)
T ss_dssp             HHHHSCCCCSS-------SCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred             HHHHhCcchhh-------HHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            98876554322       3345677888889999999999988763        46677899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139          622 LFEEARSILEQECGPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       622 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  654 (712)
                      +|++++++        +|.....|..|+..+..
T Consensus       298 ~~~~ai~l--------dP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         298 YFSTLKAV--------DPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHH--------CGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------CcccHHHHHHHHHHHhH
Confidence            99999999        99999999999887764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.1e-16  Score=154.01  Aligned_cols=225  Identities=13%  Similarity=-0.015  Sum_probs=158.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (712)
Q Consensus       365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (712)
                      +.+.|+..+.+++...    .......+.+++.+|.+|...|++++|+..|++++.+      .|..+.+++++|.+|..
T Consensus        14 ~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCCHHHHhhhchHHHH
Confidence            4455666666554321    1133556789999999999999999999999999854      45667889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHH
Q 005139          445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS  524 (712)
Q Consensus       445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  524 (712)
                      +|++++|+..|++++.+        .|....++..+|.+|..+|++++|+..|++++++..         ........++
T Consensus        84 ~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~~~  146 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---------NDPFRSLWLY  146 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc---------ccHHHHHHHH
Confidence            99999999999999999        788888999999999999999999999999999832         2244455666


Q ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 005139          525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN  604 (712)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  604 (712)
                      .++...+..+.+..+.......    .........+...++. ....+.+..+...+..+...        .+....+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  213 (259)
T d1xnfa_         147 LAEQKLDEKQAKEVLKQHFEKS----DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNF  213 (259)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHS----CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHhhcc----chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHH
Confidence            6666666655554444333222    1112211111111111 01112233344444433333        134557889


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139          605 QMGLACVQRYSINEAVELFEEARSI  629 (712)
Q Consensus       605 ~lg~~~~~~g~~~~A~~~~~~al~~  629 (712)
                      .+|.+|..+|++++|+.+|++|+..
T Consensus       214 ~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         214 YLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.2e-16  Score=162.24  Aligned_cols=273  Identities=9%  Similarity=-0.110  Sum_probs=213.2

Q ss_pred             HHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLG----------DTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      ....+..++|+.++++++.+.     |++..    +|...+          ..+...|++++|+.++++++..       
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~-----P~~~~----a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-------  102 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGAN-----PDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------  102 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-----TTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HhcccccHHHHHHHHHHHHHC-----CCcHH----HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence            333444589999999999886     55443    243333          3445556688999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          345 TDPRVGETCRYLAEAHVQALQ--FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM  422 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~  422 (712)
                       +|....++..+|.++...++  +++|+..+.+++.+.+...       ...+..+|.++...+.+++|+.++++++   
T Consensus       103 -~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~Al~~~~~~i---  171 (334)
T d1dcea1         103 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLI---  171 (334)
T ss_dssp             -CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTCCCHHHHHHHHHTTT---
T ss_pred             -CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh-------hhhhhHHHHHHHhccccHHHHHHHHHHH---
Confidence             78888999999998888765  8999999999999865432       1234577889999999999999999887   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR  502 (712)
Q Consensus       423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  502 (712)
                         ..+|....+++++|.++..+|++++|+..+++++.+        .+....    +...+...+..+++...+.+++.
T Consensus       172 ---~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~----~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         172 ---TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--------LLKELE----LVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             ---TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--------HHHHHH----HHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             ---HcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--------HHHHHH----HHHHHHHhcchhHHHHHHHHHHH
Confidence               567777889999999999999999999999998888        333332    33445667888899999999887


Q ss_pred             HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139          503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK  582 (712)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  582 (712)
                      ....         ....+..++.++...|++.+|+..+.+++...+..       ..++..+|.+|...|++++|+++|+
T Consensus       237 ~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~eA~~~~~  300 (334)
T d1dcea1         237 GRAE---------PLFRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEKETLQYFS  300 (334)
T ss_dssp             SCCC---------CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             hCcc---------hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6322         23346678888999999999999999887665543       5789999999999999999999999


Q ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005139          583 NAISKLRAIGERKSAFFGVALNQMGLACVQR  613 (712)
Q Consensus       583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~  613 (712)
                      +++++        .|.....|..|+..+...
T Consensus       301 ~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         301 TLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHH--------CcccHHHHHHHHHHHhHh
Confidence            99997        244557788888777643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.5e-14  Score=150.66  Aligned_cols=273  Identities=8%  Similarity=-0.025  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 005139          367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS  446 (712)
Q Consensus       367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  446 (712)
                      -+|+++|++|+.+.++..+        ++.++|.++..+|++++|   |++++.      .++..+..+...+.++  ..
T Consensus         3 ~eA~q~~~qA~~l~p~~a~--------a~~~la~~~~~~~~l~ea---ye~~i~------~dp~~a~~~~~e~~Lw--~~   63 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTD--------SKLGPAEVWTSRQALQDL---YQKMLV------TDLEYALDKKVEQDLW--NH   63 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTC--------SSSCSSSSHHHHHHHHHH---HHHHHH------HCHHHHHHHTHHHHHH--HH
T ss_pred             HHHHHHHHHHHHcCCCCHH--------HHhhHHHHHHHHchHHHH---HHHHHH------cChhhHHHHhHHHHHH--HH
Confidence            3789999999999988765        577899999999999877   777763      2445444443333222  11


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139          447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI  526 (712)
Q Consensus       447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  526 (712)
                      .|..++..+++.....   ...+..  ......++.++...+.|+.|+..+.+++.+         .+.....+.++|.+
T Consensus        64 ~y~~~ie~~r~~~k~~---~~~~~~--~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l---------~~~~~~~~~~lg~~  129 (497)
T d1ya0a1          64 AFKNQITTLQGQAKNR---ANPNRS--EVQANLSLFLEAASGFYTQLLQELCTVFNV---------DLPCRVKSSQLGII  129 (497)
T ss_dssp             HTHHHHHHHHHHHSCS---SCTTTT--HHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHHhcccc---cCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHhHHH
Confidence            2445555555544320   001111  111222344444455555555555555544         34457778999999


Q ss_pred             HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005139          527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM  606 (712)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  606 (712)
                      +...|++++|+..+.+++.....         .++..+|.++...|++++|+.+|++|+.+        .|..+.+++.|
T Consensus       130 ~~~~~~~~~A~~~~~~al~~~~~---------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~L  192 (497)
T d1ya0a1         130 SNKQTHTSAIVKPQSSSCSYICQ---------HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQL  192 (497)
T ss_dssp             -------------CCHHHHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHhCCCHH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHH
Confidence            99999999999999999887653         47889999999999999999999999997        23445899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccch---hhhCCCChhHHHHHHHHHHHHHHhc
Q 005139          607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRE---EKLGTANPDVDDEKRRLAELLKEAG  683 (712)
Q Consensus       607 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~---~~l~~~~p~~~~~~~~la~~~~~~g  683 (712)
                      |.++...|++.+|+.+|.+|+.+        .|....++.+|+.++....+.   .......+........+..++....
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~  264 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSK  264 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHhCC
Confidence            99999999999999999999998        788899999999999876651   1122234445555666666666666


Q ss_pred             cHHHHHHHHHHHHHH
Q 005139          684 RVRSRKAQSLETLLD  698 (712)
Q Consensus       684 ~~~~A~~~~l~~~l~  698 (712)
                      .++... ...+.++.
T Consensus       265 ~~~~~~-~~~~~~~~  278 (497)
T d1ya0a1         265 SLEKLS-PLREKLEE  278 (497)
T ss_dssp             CGGGHH-HHHHHHHH
T ss_pred             chhhHH-HHHHHHHH
Confidence            666655 44444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=145.64  Aligned_cols=282  Identities=11%  Similarity=0.037  Sum_probs=166.0

Q ss_pred             HHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          283 EAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (712)
Q Consensus       283 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (712)
                      +|+++|++|+.+.     ++...    ++..+|.+|..+|++++|   |++++..        +|..+..+...+.+.  
T Consensus         4 eA~q~~~qA~~l~-----p~~a~----a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--   61 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-----ADMTD----SKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--   61 (497)
T ss_dssp             HHHHHHHHHHHHH-----GGGTC----SSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--
T ss_pred             HHHHHHHHHHHcC-----CCCHH----HHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--
Confidence            7899999999986     44433    378899999999999876   8888877        677666554333222  


Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139          363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY  442 (712)
Q Consensus       363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  442 (712)
                      ...|..+++.+++......   .+.....  ....++.++...+.|+.|+..+.+++      +..+.....+.++|.++
T Consensus        62 ~~~y~~~ie~~r~~~k~~~---~~~~~~~--~~~~~~~l~~a~~~Y~~ai~~l~~~~------~l~~~~~~~~~~lg~~~  130 (497)
T d1ya0a1          62 NHAFKNQITTLQGQAKNRA---NPNRSEV--QANLSLFLEAASGFYTQLLQELCTVF------NVDLPCRVKSSQLGIIS  130 (497)
T ss_dssp             HHHTHHHHHHHHHHHSCSS---CTTTTHH--HHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred             HHHHHHHHHHHHHhccccc---CccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH------CCChhhHHHHHHhHHHH
Confidence            1224555666655443211   1111111  12234555566666777777666555      34566677889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005139          443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD  522 (712)
Q Consensus       443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  522 (712)
                      ...|++++|+..+.+++..        .+  ..++.++|.++...|++++|+.+|.+|+.+         .|....++++
T Consensus       131 ~~~~~~~~A~~~~~~al~~--------~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---------~P~~~~~~~~  191 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSY--------IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL---------VPSNGQPYNQ  191 (497)
T ss_dssp             ------------CCHHHHH--------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTBSHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCC--------CH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---------CCCchHHHHH
Confidence            9999999999999999876        33  468889999999999999999999999999         5566888999


Q ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 005139          523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA  602 (712)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  602 (712)
                      ||.++...|++.+|+.+|.+|+.+.+..       ..++.+|+.++.+..+..++...            ..........
T Consensus       192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~-------~~a~~nL~~~~~~~~~~~~~~~~------------~~~~~~~~~~  252 (497)
T d1ya0a1         192 LAILASSKGDHLTTIFYYCRSIAVKFPF-------PAASTNLQKALSKALESRDEVKT------------KWGVSDFIKA  252 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHSSSBCC-------HHHHHHHHHHHHHHTTSCCCCCS------------SCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhhhhhhhhcc------------ccccchHHHH
Confidence            9999999999999999999998764332       45778888887654432211100            0011122234


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          603 LNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      +..+..++.....++....+.++.+..+.....
T Consensus       253 f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  285 (497)
T d1ya0a1         253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF  285 (497)
T ss_dssp             HHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence            444444555566666666666666665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.3e-12  Score=116.27  Aligned_cols=138  Identities=18%  Similarity=0.170  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV  473 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  473 (712)
                      .+++.|..+...|+|+.|++.|.++.      +   ..+.+++++|.+|..+|++++|+.+|++|+++        +|..
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~------~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~   69 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ------D---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHL   69 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS------S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC------C---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhh
Confidence            45577999999999999999997531      1   22467899999999999999999999999999        8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI  546 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (712)
                      +.++.++|.++..+|++++|+..|++++...+...       ..........+++++|.++...|++++|++.+.+|+.+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998643310       00111234678899999999999999999999999876


Q ss_pred             HH
Q 005139          547 YN  548 (712)
Q Consensus       547 ~~  548 (712)
                      .+
T Consensus       150 ~~  151 (192)
T d1hh8a_         150 KS  151 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.7e-12  Score=114.52  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139          267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD  346 (712)
Q Consensus       267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  346 (712)
                      .+++.|..+...|+|+.|+..|.++.        +.++    .+++++|.+|..+|++++|+.+|++++++        +
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~--------~~~~----~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------d   66 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHS----RICFNIGCMYTILKNMTEAEKAFTRSINR--------D   66 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC--------CCCH----HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------h
Confidence            45567999999999999999998743        2222    35899999999999999999999999999        7


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139          347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS--------PASLEEAADRRLMGLICETKGDHEAALEHLVLA  418 (712)
Q Consensus       347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a  418 (712)
                      |..+.+|.++|.++..+|++++|+..|++++...+....        ........+++++|.++...|++++|++.+.++
T Consensus        67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            899999999999999999999999999999986543321        011122457888999999999999999999888


Q ss_pred             HH
Q 005139          419 SM  420 (712)
Q Consensus       419 l~  420 (712)
                      +.
T Consensus       147 ~~  148 (192)
T d1hh8a_         147 TS  148 (192)
T ss_dssp             HT
T ss_pred             Hh
Confidence            73

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4e-11  Score=106.20  Aligned_cols=134  Identities=15%  Similarity=0.035  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      .+..+...|..++..|+|++|+.+|.+++.+      .|....++.++|.+|..+|++++|+..|++++++        .
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------~   74 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   74 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------c
Confidence            3456778899999999999999999999854      5667889999999999999999999999999999        8


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHH
Q 005139          471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY--ESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~  547 (712)
                      |....++..+|.++..+|++++|+..|++++.+.         |....++..++.+.  ...+.+++|+........+.
T Consensus        75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  144 (159)
T d1a17a_          75 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK---------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  144 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhh
Confidence            8889999999999999999999999999999983         23344455555543  44555677766555444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.7e-11  Score=104.68  Aligned_cols=129  Identities=12%  Similarity=0.124  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139          432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV  511 (712)
Q Consensus       432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  511 (712)
                      +..+...|..|+..|+|++|+.+|++++++        +|....+|.++|.+|..+|++++|+..|++++++        
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------   73 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   73 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence            345667899999999999999999999999        8889999999999999999999999999999999        


Q ss_pred             CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 005139          512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY--YMLGNYSDSYDSFKNA  584 (712)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a  584 (712)
                       .|....++..+|.++..+|++++|+..+++++.+.+..       ..++..++.+.  ...+.+++|+......
T Consensus        74 -~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~~~~~~~~a~~~~~~~  140 (159)
T d1a17a_          74 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-------KDAKMKYQECNKIVKQKAFERAIAGDEHK  140 (159)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence             45567889999999999999999999999999986543       23444444443  3344556665544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.28  E-value=2e-10  Score=101.03  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=111.4

Q ss_pred             HHHHHHHH--HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          516 IASGLTDV--SSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       516 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      ++.++..+  |..++..|+|++|+..|++++++.+..+....     ..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            44555555  77888999999999999999999988754332     346789999999999999999999999999999


Q ss_pred             HHhCCCCC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          589 RAIGERKS---AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       589 ~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      ........   +....+++++|.+|..+|++++|+..|++|+++..+..+. .+.....+..++..+..+|
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHHcC
Confidence            87755432   3455689999999999999999999999999998776553 4455555666665555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.7e-11  Score=100.89  Aligned_cols=110  Identities=16%  Similarity=0.254  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      -+...|..++..|+|++|+.+|++++.+        .|..+.++..+|.+|..+|++++|+..|.+++.+         .
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~   67 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---------K   67 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh---------c
Confidence            3567899999999999999999999998        8888999999999999999999999999999999         4


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                      |....+|.++|.++..+|++++|+..|++++++.+..       ..++..++.+
T Consensus        68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~l  114 (117)
T d1elwa_          68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-------PQLKEGLQNM  114 (117)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Confidence            4567889999999999999999999999999876554       2455555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.7e-11  Score=100.01  Aligned_cols=112  Identities=14%  Similarity=0.175  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005139          518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                      .-+...|..++..|++++|+.+|.+++.+.+..       ..++..+|.+|..+|++++|+..|.+++.+.        +
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p   68 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------P   68 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-------hhhhhcccccccccccccccchhhhhHHHhc--------c
Confidence            346778999999999999999999999987655       4689999999999999999999999999872        2


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY  652 (712)
Q Consensus       598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  652 (712)
                      ....+|..+|.++..+|++++|+..|++++++        .|+...++..++.+.
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence            34578999999999999999999999999998        888888888887764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-10  Score=103.89  Aligned_cols=129  Identities=11%  Similarity=0.030  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD---------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA  461 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  461 (712)
                      .+..+...|..++..|+|++|+.+|.+++.........         .....++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            35567889999999999999999999999876543321         234567788999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139          462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (712)
                              +|..+.++..+|.+|..+|++++|+..|++++++         .|....+...++.+....++..+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    8888999999999999999999999999999998         333455677788777766665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=6.7e-10  Score=107.44  Aligned_cols=222  Identities=18%  Similarity=0.207  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQ  340 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~  340 (712)
                      +.+++.||..++..+++.+|+.+|+++.+..           ...+++.||.+|..    ..++..|..++..+...   
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc---
Confidence            4578889999999999999999999997652           23358899999998    67899999999997764   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHH
Q 005139          341 VLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAAL  412 (712)
Q Consensus       341 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~  412 (712)
                             ....+...+|.++..    ..+.+.|..+++++.....          ..+...++..+..    ......|.
T Consensus        68 -------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~----------~~a~~~l~~~~~~~~~~~~~~~~a~  130 (265)
T d1ouva_          68 -------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY----------AEGCASLGGIYHDGKVVTRDFKKAV  130 (265)
T ss_dssp             -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             -------cccchhhccccccccccccchhhHHHHHHHhhhhhhhh----------hhHHHhhcccccCCCcccchhHHHH
Confidence                   234556777777765    4678999999988875321          2245666766664    45677777


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--
Q 005139          413 EHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR--  486 (712)
Q Consensus       413 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--  486 (712)
                      ..+.+...        ......+..+|.+|..    ..+...+..+++.+.+.          ....++++||.+|..  
T Consensus       131 ~~~~~~~~--------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         131 EYFTKACD--------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             HHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTC
T ss_pred             HHhhhhhc--------ccccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCc
Confidence            77776542        2224567888999886    45667777777777653          235688999999987  


Q ss_pred             --cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Q 005139          487 --TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKI  546 (712)
Q Consensus       487 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  546 (712)
                        ..++++|+.+|.++.+.      +     .+.++++||.+|..    ..++++|+.+|++|...
T Consensus       193 ~~~~d~~~A~~~~~~aa~~------g-----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         193 GATKNFKEALARYSKACEL------E-----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             ccccchhhhhhhHhhhhcc------c-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence              67999999999999776      1     25678999999986    44899999999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.25  E-value=1.1e-10  Score=102.85  Aligned_cols=140  Identities=14%  Similarity=0.103  Sum_probs=108.5

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139          432 ASVDCSI--GDTYLSLSRYDEAGFAYQKALTAFKTNKGEN----HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       432 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  505 (712)
                      +.++..+  |..++..|+|++|+..|++++++........    .+..+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3444444  7888899999999999999999977653221    234577899999999999999999999999999987


Q ss_pred             cCCC--CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc
Q 005139          506 KPVP--GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML  571 (712)
Q Consensus       506 ~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  571 (712)
                      +...  ....+....+++++|.+|..+|++++|+..|++++++.++..+...........++..+..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence            5421  12234566789999999999999999999999999999988776655555555555544433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=4.5e-11  Score=110.46  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139          433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP  512 (712)
Q Consensus       433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  512 (712)
                      ..+...|..++..|+|++|+.+|++++.+        .|..+.+|.++|.+|...|++++|+.+|++|+.+         
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---------   67 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---------   67 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh---------
Confidence            45678899999999999999999999999        8888999999999999999999999999999987         


Q ss_pred             ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC
Q 005139          513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (712)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (712)
                      .|..+.+|.++|.+|..+|++++|+..|++++.+.+.....
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            45568889999999999999999999999999999876443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.8e-11  Score=99.44  Aligned_cols=105  Identities=13%  Similarity=0.216  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC
Q 005139          474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ  553 (712)
Q Consensus       474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  553 (712)
                      +..+..+|..++..|+|++|+.+|.+++++         .|....++.++|.+|..+|+|++|+..+++++.+.+.....
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence            456778999999999999999999999999         34457789999999999999999999999999999998766


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      ...++.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            6778889999999999999999999999999874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.22  E-value=1.4e-09  Score=105.10  Aligned_cols=222  Identities=15%  Similarity=0.184  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHhHHHHHHHHhhchhh
Q 005139          221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSIEIPV  296 (712)
Q Consensus       221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~al~~~~  296 (712)
                      +..++.+|..++..++ +.+|+.+|++|.+.        .   .+.+++.||.+|..    ..++..|..+++.+.... 
T Consensus         2 p~~~~~lG~~~~~~~d-~~~A~~~~~kAa~~--------g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKD-FTQAKKYFEKACDL--------K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-
Confidence            5689999999999997 99999999999753        1   25678889999997    678999999999887642 


Q ss_pred             hhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hCCHHH
Q 005139          297 IEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSE  368 (712)
Q Consensus       297 ~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  368 (712)
                            ++    .+...+|.++..    ..+.+.|..+++++...          ....+...++..+..    ......
T Consensus        69 ------~~----~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~----------g~~~a~~~l~~~~~~~~~~~~~~~~  128 (265)
T d1ouva_          69 ------YS----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDFKK  128 (265)
T ss_dssp             ------CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ------cc----chhhccccccccccccchhhHHHHHHHhhhhhh----------hhhhHHHhhcccccCCCcccchhHH
Confidence                  22    236777877765    46889999999988765          223445566666664    445666


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS  444 (712)
Q Consensus       369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  444 (712)
                      |...+.+......          ...+..+|.++..    ..+...+..++..+..        .....+++++|.+|..
T Consensus       129 a~~~~~~~~~~~~----------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--------~g~~~A~~~lg~~y~~  190 (265)
T d1ouva_         129 AVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--------LKDSPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccc----------cchhhhhhhhhccCCCcccccccchhhhhcccc--------ccccccccchhhhccc
Confidence            7766666543211          2367888998886    4567778888777652        1235678899999987


Q ss_pred             ----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 005139          445 ----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI  503 (712)
Q Consensus       445 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  503 (712)
                          ..++++|+.+|+++.+.       .+   ..++++||.+|..    ..++.+|..+|++|...
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                67999999999999775       23   4688999999986    44899999999999887

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-10  Score=102.91  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS--------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  587 (712)
                      .+..+...|..++..|+|++|+..|++++.+.+.......        ....++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4667788999999999999999999999999876544332        23456778999999999999999999999987


Q ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139          588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR  657 (712)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  657 (712)
                              .|....+++.+|.+|..+|++++|+..|++++++        +|+...+...++.++...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHH
Confidence                    2334589999999999999999999999999999        88888888888777665544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.6e-10  Score=93.85  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139          310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL  389 (712)
Q Consensus       310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  389 (712)
                      .+..+|..++..|+|++|+.+|.+++++        +|....++.++|.+|..+|+|++|+..+++++.+.+.... ...
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~   76 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYR   76 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH-HHH
Confidence            4778999999999999999999999998        6788899999999999999999999999999999988765 345


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASM  420 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~  420 (712)
                      ..+.++..+|.++...+++++|+.+|.+++.
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            6678899999999999999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=2.7e-10  Score=99.76  Aligned_cols=125  Identities=17%  Similarity=0.193  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST---------VAGIEAQMGVMYYMLGNYSDSYDSFKNAIS  586 (712)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  586 (712)
                      .+..+...|..++..|+|.+|+..|++|+.+.+........         ...++.++|.+|..+|++++|+.++++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            35567788999999999999999999999987765333322         234678899999999999999999999998


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      +        .+....+++.+|.++..+|++++|+..|++++++        +|+...+...+..+...++
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence            6        2334589999999999999999999999999999        8888888888888776554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.1e-09  Score=106.37  Aligned_cols=227  Identities=9%  Similarity=0.041  Sum_probs=167.3

Q ss_pred             hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHH-------HHcCC-------HHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY-------AMLGQ-------LENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~-------~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      +.+..+|++|+...     +.++.    +|...+..+       ...|.       .++|...|++++..       ..|
T Consensus        33 ~Rv~~vyerAl~~~-----~~~~~----lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTT
T ss_pred             HHHHHHHHHHHHHC-----CCCHH----HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCC
Confidence            45666788888765     44443    244444333       22333       35555556555543       245


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ  427 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  427 (712)
                      .....|..++.++...|+++.|...|++++...+...       ..++..++......|+++.|...|.+++.      .
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-------~~~w~~~~~~~~~~~~~~~ar~i~~~al~------~  163 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARE------D  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHT------S
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH------h
Confidence            5567888899999999999999999999987543321       23577888889999999999999999873      3


Q ss_pred             ChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139          428 DAEVASVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK  506 (712)
Q Consensus       428 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  506 (712)
                      .+.....+...|.... ..|+.+.|..+|++++..        .|.....+...+.++...|+++.|..+|++++.....
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            4444455666676544 468999999999999987        5666788999999999999999999999999986422


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139          507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (712)
                           ++......|..........|+.+.+..+++++.++++..
T Consensus       236 -----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         236 -----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             -----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             -----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence                 122335567777888888899999999999999988765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.17  E-value=2.4e-10  Score=100.14  Aligned_cols=123  Identities=15%  Similarity=0.022  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----------EVASVDCSIGDTYLSLSRYDEAGFAYQKALT  460 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  460 (712)
                      .+..+...|..++..|+|.+|+..|.+++..+.......          ....++.++|.+|..+|++++|+.+++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            345677889999999999999999999997665433221          2345788999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc
Q 005139          461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (712)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (712)
                      +        +|....+++.+|.+|..+|++++|+.+|++++++         .|....+...++.+....
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------NPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHH
Confidence            9        8888999999999999999999999999999999         333455566666665544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.17  E-value=4.3e-10  Score=100.22  Aligned_cols=138  Identities=14%  Similarity=0.071  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ---------DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF  462 (712)
Q Consensus       392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  462 (712)
                      +..+...|..++..|+|.+|+.+|.+++........         ......++.++|.+|..+|++++|+.++++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            456778999999999999999999999977644322         2234567889999999999999999999999999 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH-HHHHHH
Q 005139          463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ-AIKLLQ  541 (712)
Q Consensus       463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~  541 (712)
                             +|....+++.+|.+|..+|++++|+..|.+++.+         .|....+...++.+....+.+.+ ..+.|.
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l---------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~  157 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---------NPQNKAARLQIFMCQKKAKEHNERDRRTYA  157 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                   8888999999999999999999999999999988         34446667788888777665543 444555


Q ss_pred             HHHHH
Q 005139          542 KALKI  546 (712)
Q Consensus       542 ~al~~  546 (712)
                      +..+-
T Consensus       158 ~~f~~  162 (168)
T d1kt1a1         158 NMFKK  162 (168)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=6.4e-11  Score=109.44  Aligned_cols=104  Identities=18%  Similarity=0.122  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139          265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE  344 (712)
Q Consensus       265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  344 (712)
                      +..+...|..|+..|+|++|+.+|++++.+.     |.++.    +|.++|.+|...|++++|+.+|.+++++       
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-----p~~~~----~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAV----YYTNRALCYLKMQQPEQALADCRRALEL-------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHhHHHHHhhhhhhhhhhHHHHHHHHh-------
Confidence            4557788999999999999999999999986     55543    5999999999999999999999999988       


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139          345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS  385 (712)
Q Consensus       345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  385 (712)
                       +|....+|.++|.+|..+|++++|+..|++++.+.+....
T Consensus        68 -~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence             7888999999999999999999999999999999987654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.16  E-value=1.2e-10  Score=95.90  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ..+.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+.+|++++++         .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------~   80 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   80 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc---------c
Confidence            3567899999999999999999999998        8888999999999999999999999999999999         5


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKAL  544 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (712)
                      |....++..+|.+|..+|++++|++.+++.+
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5568899999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=5.1e-10  Score=99.97  Aligned_cols=132  Identities=12%  Similarity=0.113  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANG-------KPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~-------~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      .+..+...|..++..|+ |.+|+..|.+|+.+.......       ...|..+.++.++|.+|..+|+|++|+..|++++
T Consensus        26 ~a~~~~~~~~~~~~~~~-y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34556788999999997 999999999999876543211       1236678889999999999999999999999999


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEA  369 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  369 (712)
                      ++.     |.++.    +|+.+|.+|..+|++++|+..|++++++        +|....+...++.+........++
T Consensus       105 ~~~-----p~~~~----a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         105 EID-----PSNTK----ALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TTC-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh-----hhhhh----HHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            986     55543    5999999999999999999999999998        566667777777777665554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.3e-09  Score=107.82  Aligned_cols=226  Identities=15%  Similarity=0.043  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--------------hCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005139          325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ--------------ALQFSEAQKFCQMALDIHKDNGSPASLE  390 (712)
Q Consensus       325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------------~g~~~~A~~~~~~al~~~~~~~~~~~~~  390 (712)
                      +.+...|++|+...        |....+|...+..+..              .+..++|..+|++++.....    ..  
T Consensus        33 ~Rv~~vyerAl~~~--------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p----~~--   98 (308)
T d2onda1          33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK----KN--   98 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT----TC--
T ss_pred             HHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC----CC--
Confidence            45666788888873        4444555555544332              23456777778777754311    11  


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                       ...+...+.++...|+++.|...|++++..     .+.....++...+.+....|+++.|..+|.+++..        .
T Consensus        99 -~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--------~  164 (308)
T d2onda1          99 -MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------A  164 (308)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------T
T ss_pred             -HHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------C
Confidence             236778899999999999999999998731     22233456778888899999999999999999876        5


Q ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139          471 PAVASVFVRLADMYN-RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       471 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      |.....+...|.... ..|+.+.|..+|++++.....         ....+...+..+...|+++.|..+|++++...+.
T Consensus       165 ~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~---------~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            555667777787654 468999999999999998533         4677888999999999999999999999886432


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139          550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA  590 (712)
Q Consensus       550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  590 (712)
                      .+   .....++..........|+.+.+..+++++.+++..
T Consensus       236 ~~---~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         236 PP---EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             CG---GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             Ch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            21   122346666777777889999999999999887643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.12  E-value=7.3e-10  Score=98.71  Aligned_cols=142  Identities=13%  Similarity=0.181  Sum_probs=110.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI  292 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al  292 (712)
                      ..+..+...|..++..|+ |.+|+..|.+|+.+++......      ..+....++.++|.||..+|+|++|+.++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            346778899999999997 9999999999998874432111      113345678889999999999999999999999


Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHH-HHH
Q 005139          293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSE-AQK  371 (712)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~  371 (712)
                      .+.     |.+.    .+++.+|.+|..+|++++|+..|.+++.+        +|....+...++.+....+.+.+ ..+
T Consensus        92 ~l~-----p~~~----~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          92 GLD-----SANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-----cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            886     4443    35999999999999999999999999988        67777788888888776665543 334


Q ss_pred             HHHHHHH
Q 005139          372 FCQMALD  378 (712)
Q Consensus       372 ~~~~al~  378 (712)
                      .|.+..+
T Consensus       155 ~~~~~f~  161 (168)
T d1kt1a1         155 TYANMFK  161 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=6.9e-10  Score=99.06  Aligned_cols=126  Identities=14%  Similarity=0.113  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139          394 DRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK  463 (712)
Q Consensus       394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  463 (712)
                      .+...|..+...|+|.+|+..|.+++......          ...+..+.++.++|.+|..+|++++|+..|++++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            45677889999999999999999998654321          224567788999999999999999999999999998  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139          464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA  536 (712)
Q Consensus       464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  536 (712)
                            .|..+.+++.+|.+|..+|++++|+..|++++++.         |....+...++.+........++
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~---------p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---------PEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHHHHHHH
Confidence                  88889999999999999999999999999999993         33355677777777666555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.09  E-value=3.2e-10  Score=93.31  Aligned_cols=93  Identities=17%  Similarity=0.051  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139          268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP  347 (712)
Q Consensus       268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  347 (712)
                      .+.+|.++...|++++|+..|++++.+.     |+++    .+|..+|.++...|++++|+.+|++++++        +|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   81 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE-----PERE----EAWRSLGLTQAENEKDGLAIIALNHARML--------DP   81 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc-----cccc----hhhhhhhhhhhhhhhHHHhhccccccccc--------cc
Confidence            4568999999999999999999999886     5554    35999999999999999999999999999        78


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139          348 RVGETCRYLAEAHVQALQFSEAQKFCQMAL  377 (712)
Q Consensus       348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  377 (712)
                      ....++..+|.+|...|++++|++.+++.|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            889999999999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.4e-10  Score=93.57  Aligned_cols=115  Identities=8%  Similarity=-0.061  Sum_probs=94.2

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCCh
Q 005139          521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSA  597 (712)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  597 (712)
                      ..++..+...+++++|.+.|++++.+.+..       ..+++++|.++...+   ++++|+.+|++++..      ...+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            457778889999999999999999987655       468999999998754   455688888887753      1123


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139          598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       598 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  656 (712)
                      ....+++.||.+|..+|++++|+.+|++++++        +|+...+...+..+....+
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHHc
Confidence            34568999999999999999999999999999        9999998888887776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.2e-09  Score=83.32  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139          558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY  637 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  637 (712)
                      +.-++.+|.+++..|+|.+|+.+|++|+.+........ ...+.++.+||.++.+.|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~-~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST-IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC-ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34567999999999999999999999999877654433 345789999999999999999999999999999        


Q ss_pred             ChhhHHHHHHHHHHHHHcc
Q 005139          638 HPDTLGVYSNLAGTYDAIG  656 (712)
Q Consensus       638 ~p~~~~~~~~La~~~~~~g  656 (712)
                      +|+...++.+++.+...++
T Consensus        76 ~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhC
Confidence            9999999999998776554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=90.87  Aligned_cols=113  Identities=13%  Similarity=-0.030  Sum_probs=90.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHhHHHHHHHHhhchhhhhhcc
Q 005139          225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG---QYNEAIPVLEQSIEIPVIEEGQ  301 (712)
Q Consensus       225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~  301 (712)
                      -.++..++..++ +++|.+.|++++.+.         |..+.+++++|.++...+   ++.+|+.+|++++...     +
T Consensus         3 ~~l~n~~~~~~~-l~~Ae~~Y~~aL~~~---------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-----~   67 (122)
T d1nzna_           3 EAVLNELVSVED-LLKFEKKFQSEKAAG---------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-----S   67 (122)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHS---------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-----C
T ss_pred             HHHHHHhcCHHH-HHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-----C
Confidence            356677888886 999999999999874         445778999999998744   5567999999999764     2


Q ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139          302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ  362 (712)
Q Consensus       302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  362 (712)
                      ..  ....+++.+|.+|...|++++|+.+|++++++        +|....+...++.+...
T Consensus        68 ~~--~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          68 KE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             Cc--hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHH
Confidence            11  13456999999999999999999999999999        67777777766655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.6e-08  Score=79.80  Aligned_cols=88  Identities=8%  Similarity=0.032  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139          517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS  596 (712)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  596 (712)
                      +..++.+|.++...|+|++|+.+|++|+++.+.........+.++.++|.++.+.|++++|+.+|++++++     +   
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~---   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----D---   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----C---
Confidence            45578999999999999999999999999999876666788899999999999999999999999999997     2   


Q ss_pred             hHHHHHHHHHHHHHHH
Q 005139          597 AFFGVALNQMGLACVQ  612 (712)
Q Consensus       597 ~~~~~~~~~lg~~~~~  612 (712)
                      |....++.+++.+...
T Consensus        77 P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          77 PEHQRANGNLKYFEYI   92 (95)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            2334678887765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=7.4e-09  Score=89.20  Aligned_cols=93  Identities=15%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHhcCCCC
Q 005139          441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----------GKLRESKSYCENALRIYEKPVPG  510 (712)
Q Consensus       441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  510 (712)
                      .|.+++.|++|+..|++++++        .|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            355677899999999999999        899999999999999854          4568899999999998       


Q ss_pred             CCChhHHHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHhC
Q 005139          511 VPPEEIASGLTDVSSIYESMNE-----------LEQAIKLLQKALKIYNDA  550 (712)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~  550 (712)
                        .|....+++++|.+|..+|+           +++|+++|++++.+.|..
T Consensus        71 --~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          71 --DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             --cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence              55668889999999988764           688999999999887654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=1e-08  Score=88.32  Aligned_cols=107  Identities=12%  Similarity=0.044  Sum_probs=85.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139          401 ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL----------SRYDEAGFAYQKALTAFKTNKGENH  470 (712)
Q Consensus       401 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~  470 (712)
                      .+.+.+.|++|+..|++++.      ..|..+.+++++|.++...          +.+++|+..|++++++        +
T Consensus         6 ~~~r~~~fe~A~~~~e~al~------~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------~   71 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYK------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   71 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHccHHHHHHHHHHHHh------hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------c
Confidence            35567789999999999984      4677789999999999854          4568899999999998        8


Q ss_pred             HHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc
Q 005139          471 PAVASVFVRLADMYNRTGK-----------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM  530 (712)
Q Consensus       471 ~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~  530 (712)
                      |....+++++|.+|..+|+           |++|+.+|++++++         .|.....+..|+.+....
T Consensus        72 P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---------~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          72 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---------QPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHTHH
T ss_pred             chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---------CCCHHHHHHHHHHHHHHH
Confidence            8999999999999988764           68889999999988         444556666676665433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.47  E-value=8.9e-07  Score=83.92  Aligned_cols=119  Identities=10%  Similarity=-0.056  Sum_probs=102.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005139          567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS  646 (712)
Q Consensus       567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~  646 (712)
                      -.+..|++++|+..|+++++.        .|....++..+|.+++..|++++|+..|++++++        +|+...++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~~   68 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS   68 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHH
Confidence            456789999999999999985        3445689999999999999999999999999999        999999999


Q ss_pred             HHHHHHHHccc--------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139          647 NLAGTYDAIGR--------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR  702 (712)
Q Consensus       647 ~La~~~~~~g~--------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~  702 (712)
                      .++.++...+.        .......+|.....+...+.++...|++++|. ..++++++..|.
T Consensus        69 ~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~-~~~~~a~e~~p~  131 (264)
T d1zbpa1          69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred             HHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCCC
Confidence            99998877766        12223456777778888999999999999999 999999999987

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=1.4e-06  Score=77.27  Aligned_cols=114  Identities=11%  Similarity=-0.020  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccch-------------HHHHHHHHHHHHHHHHcCCHHHHH
Q 005139          262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA-------------LAKFAGHMQLGDTYAMLGQLENSL  328 (712)
Q Consensus       262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~  328 (712)
                      ......+...|......|++++|+..|.+++.+.+.....+..             ...+.++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4456778889999999999999999999999986432211110             113457889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139          329 MCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN  383 (712)
Q Consensus       329 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  383 (712)
                      .++++++.+        +|....+|..++.++...|++.+|+..|+++.......
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999        78999999999999999999999999999998876553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=2.4e-06  Score=75.73  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-----C-----------ChhHHHHHHHHHHHHHHcCCHHHHHH
Q 005139          390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND-----Q-----------DAEVASVDCSIGDTYLSLSRYDEAGF  453 (712)
Q Consensus       390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~-----------~~~~~~~~~~la~~~~~~g~~~~A~~  453 (712)
                      .....+...|......|++++|+..|.+|+.+....-     .           .+....++..++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            3455788899999999999999999999986543210     0           12245678899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139          454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP  507 (712)
Q Consensus       454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  507 (712)
                      ++++++.+        +|....+|..++.+|...|++.+|+..|+++.....+.
T Consensus        89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999        89999999999999999999999999999998876553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.23  E-value=1.5e-06  Score=82.39  Aligned_cols=126  Identities=11%  Similarity=0.067  Sum_probs=100.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005139          440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG  519 (712)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  519 (712)
                      .-.+..|++++|+..|+++++.        +|....++..++.+|+..|++++|+..|++++++         .|....+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---------~P~~~~~   66 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---------FPEYLPG   66 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CGGGHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCcHHH
Confidence            3456789999999999999998        9999999999999999999999999999999999         5566778


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139          520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL  588 (712)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  588 (712)
                      +..++.++...+..+++...+.+.     ...+ .+.....+...+.++...|++++|...+.++.+..
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~-----~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATA-----KVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCE-----ECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhh-----hccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            888888887766665543322211     1112 23334566678899999999999999999998864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.70  E-value=9.3e-05  Score=61.63  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005139          237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD  316 (712)
Q Consensus       237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~  316 (712)
                      |+++|+.+|++|.+.      +.     ..+.+.|+.  ....++++|+.+|+++.+..       ++    .+++.||.
T Consensus         8 d~~~A~~~~~kaa~~------g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-------~~----~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL------NE-----MFGCLSLVS--NSQINKQKLFQYLSKACELN-------SG----NGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT------TC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-------CH----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC------CC-----hhhhhhhcc--ccccCHHHHHHHHhhhhccc-------ch----hhhhhHHH
Confidence            389999999998753      22     224455554  34578999999999987642       22    35888999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139          317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDI  379 (712)
Q Consensus       317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  379 (712)
                      +|..    ..++.+|+.+|+++.+.          ....+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9886    56799999999999875          335678899999887    46899999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.60  E-value=0.00013  Score=60.71  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139          488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM  567 (712)
Q Consensus       488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  567 (712)
                      .++++|+.+|+++.+.      +.     ..++..|+.  ....++++|+.+|+++.+.     +.    ..+.+.||.+
T Consensus         7 kd~~~A~~~~~kaa~~------g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-----g~----~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL------NE-----MFGCLSLVS--NSQINKQKLFQYLSKACEL-----NS----GNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT------TC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC------CC-----hhhhhhhcc--ccccCHHHHHHHHhhhhcc-----cc----hhhhhhHHHh
Confidence            3688999999999765      21     223455553  3457899999999998764     22    3577889999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139          568 YYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI  629 (712)
Q Consensus       568 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  629 (712)
                      |..    ..++.+|+.+|+++.+.       ..   ..+.+.||.+|..    ..++.+|+.+|++|.+.
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            886    46789999999999873       12   3688899999987    46899999999999885

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.0013  Score=52.26  Aligned_cols=82  Identities=6%  Similarity=-0.100  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139          558 AGIEAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC  634 (712)
Q Consensus       558 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  634 (712)
                      ..+.+..|+++.+..+   .++|+.+++.++..       .+.....+++.||..|..+|+|++|+.++++++++     
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence            4678889999987654   45777777776642       23334579999999999999999999999999999     


Q ss_pred             CCCChhhHHHHHHHHHHHHH
Q 005139          635 GPYHPDTLGVYSNLAGTYDA  654 (712)
Q Consensus       635 ~~~~p~~~~~~~~La~~~~~  654 (712)
                         .|+...+....-.+..+
T Consensus       103 ---eP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1         103 ---ERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             ---CTTCHHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHH
Confidence               88888776655555433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.004  Score=49.43  Aligned_cols=64  Identities=6%  Similarity=-0.038  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139          432 ASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRI  503 (712)
Q Consensus       432 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  503 (712)
                      ..+.++.|.++....   +.++|+.++++++..        .| ....+++.||..|+++|+|++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            567888888888654   456788888887765        44 44689999999999999999999999999999

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=4.8  Score=39.41  Aligned_cols=121  Identities=12%  Similarity=0.067  Sum_probs=68.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005139          564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG  643 (712)
Q Consensus       564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~  643 (712)
                      .+..-....+.+.|..++......    ..............++..+...+..+.|..++......        ..+...
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~  287 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTSL  287 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--------ccchHH
Confidence            344444456777777777665432    11222223333444444444556667777766655432        222222


Q ss_pred             HHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005139          644 VYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD  698 (712)
Q Consensus       644 ~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~  698 (712)
                      ....++..+ ..++       ...+...........+-+|..+...|+.++|. ..|..+..
T Consensus       288 ~~w~~~~al-~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~-~~~~~~a~  347 (450)
T d1qsaa1         288 IERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHH-HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHH-HHHHHHhc
Confidence            222333333 3344       44444444555777899999999999999999 88888754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.72  E-value=4  Score=38.14  Aligned_cols=170  Identities=12%  Similarity=0.086  Sum_probs=96.3

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139          270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV  349 (712)
Q Consensus       270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  349 (712)
                      ..|..+...|.|+.|..+|...-.                 +..+..++...+++..|...+.++             ..
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~d-----------------~~rl~~~~v~l~~~~~avd~~~k~-------------~~   68 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVSN-----------------FGRLASTLVHLGEYQAAVDGARKA-------------NS   68 (336)
T ss_dssp             ----------CTTTHHHHHHHTTC-----------------HHHHHHHHHTTTCHHHHHHHHHHH-------------TC
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC-----------------HHHHHHHHHhhccHHHHHHHHHHc-------------CC
Confidence            368888899999999999985432                 445667888899999988877653             22


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139          350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA  429 (712)
Q Consensus       350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  429 (712)
                      ..+|..+...+.......-|.-.     ..    .....+   .-...+...|...|.+++.+.+++.++      ....
T Consensus        69 ~~~~k~~~~~l~~~~e~~la~i~-----~~----~~~~~~---d~l~~~v~~ye~~~~~e~Li~~Le~~~------~~~~  130 (336)
T d1b89a_          69 TRTWKEVCFACVDGKEFRLAQMC-----GL----HIVVHA---DELEELINYYQDRGYFEELITMLEAAL------GLER  130 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHT-----TT----TTTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHT------TSTT
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHH-----HH----HhhcCH---HHHHHHHHHHHHcCChHHHHHHHHHHH------cCCc
Confidence            34666666667666665443211     00    000111   123346677788899999999998765      2223


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139          430 EVASVDCSIGDTYLSLSRYDEAGFAYQK---------ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC  497 (712)
Q Consensus       430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  497 (712)
                      .....+..++.+|.+.+ .++-.++++.         ++..+.+.         ..|..+..+|.+.|++++|+.++
T Consensus       131 ~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~---------~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         131 AHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA---------HLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             CCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT---------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc---------CChHHHHHHHHhcCCHHHHHHHH
Confidence            33445677777776543 4444444433         22222211         12455677888889998887665

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=92.02  E-value=3.4  Score=35.72  Aligned_cols=184  Identities=14%  Similarity=0.082  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      ....+|.+..+.|+|++..++..+++.+.......-....   .+.+..+|- ..|....+...+... .  ........
T Consensus         6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eE---RnLLsvayKn~i~~~R~s~R~i~~i-e--~k~~~~~~   79 (220)
T d2o8pa1           6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEE---RHLLTLCIKHKISDYRTMTSQVLQE-Q--TKQLNNDE   79 (220)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHSCSCHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHHH---HHHHHHHHHHHHhhhHHHHHHHHHH-H--Hhhccchh
Confidence            4567889999999999999999999998653221111211   222333331 123333444333221 1  11111211


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHh
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIYE  505 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~  505 (712)
                      ...    +..-|. ..--.+-...+...+.+......++....+..+-..|..|.     ..|..++|...|++|..+..
T Consensus        80 ~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~  154 (220)
T d2o8pa1          80 LVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC  154 (220)
T ss_dssp             HHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            111    111111 11123445556666776666654432223333444455553     46888999999999999987


Q ss_pred             cCCCCCCChhHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHH
Q 005139          506 KPVPGVPPEEIASGLTDVSS-IYESMNELEQAIKLLQKALKIY  547 (712)
Q Consensus       506 ~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~  547 (712)
                      ..++ ..+|.......+.+. .|.-+++.++|.++.+.|.+.+
T Consensus       155 ~~l~-pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~f  196 (220)
T d2o8pa1         155 EHPD-KIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  196 (220)
T ss_dssp             HCGG-GGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             hcCC-CCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            6543 334443444444444 4556899999999998885443

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.87  E-value=2.6  Score=36.92  Aligned_cols=182  Identities=14%  Similarity=0.105  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139          352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQDAE  430 (712)
Q Consensus       352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  430 (712)
                      -+..+|.+.-+.++|++.+.+..+++...+...    ..   -.+.+..+|- ..|....+...+......  ..+....
T Consensus         5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt----~e---ERnLlsvayKn~i~~rR~s~R~l~~ie~k--~~~~~~~   75 (230)
T d2o02a1           5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELS----NE---ERNLLSVAYKNVVGARRSSWRVVSSIEQK--TEGAEKK   75 (230)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCC----HH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HcCcchh
Confidence            356788899999999999999999876643322    11   1222333332 223333444433322110  0011111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHHHHc----------CCHHHHHHHH
Q 005139          431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRT----------GKLRESKSYC  497 (712)
Q Consensus       431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~----------g~~~~A~~~~  497 (712)
                      ..     +..-| +..=-.+-...+...+.+.....-+  ..+ ..+..+-..|..|...          .-.+.|...|
T Consensus        76 ~~-----~i~~y-k~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY  149 (230)
T d2o02a1          76 QQ-----MAREY-REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAY  149 (230)
T ss_dssp             HH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             hH-----HHHHH-HHHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            11     01111 1111122334455555554433111  122 2333344445555432          1235799999


Q ss_pred             HHHHHHHhcCCCCCCChhHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHh
Q 005139          498 ENALRIYEKPVPGVPPEEIASGLTDVSS-IYESMNELEQAIKLLQKALKIYND  549 (712)
Q Consensus       498 ~~al~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~  549 (712)
                      ++|+.+....+++ .+|.......+.+. .|...|+.++|.++.++|+...-.
T Consensus       150 ~~A~~~A~~~L~~-t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         150 QEAFEISKKEMQP-THPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCC-CchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999998765533 44444444444444 455689999999999998876543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=11  Score=36.60  Aligned_cols=129  Identities=11%  Similarity=-0.047  Sum_probs=74.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 005139          479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA  558 (712)
Q Consensus       479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  558 (712)
                      ..+..-....+.+.|..++.........     ...........++..+...+..+.|..++......     .....  
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-----~~~~~--  286 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQL-----NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-----SQSTS--  286 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-----CCCHH--
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccc-----cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-----ccchH--
Confidence            3344444456778888877776554221     12333344444444455566667777766554322     11111  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139          559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS  628 (712)
Q Consensus       559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  628 (712)
                      .....++ .....+++..+...+...-        ..+.......+.+|..+...|+.++|..+|..+..
T Consensus       287 ~~~w~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         287 LIERRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            1222233 3455688887777665431        22333457788999999999999999999988754

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.89  E-value=11  Score=32.57  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139          574 YSDSYDSFKNAISKLRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE  633 (712)
Q Consensus       574 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  633 (712)
                      .+.|...|++|+.++.. +.+.+|..++.+++.-.-.|.-.|+.++|..+-++|++-.-..
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~~  202 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAE  202 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            35799999999999876 4555555555556555566677899999999999988765443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.34  E-value=2.1  Score=29.91  Aligned_cols=40  Identities=10%  Similarity=0.031  Sum_probs=34.1

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      |-+.+..+..-|.-+...|.|++|++++++|...+...+.
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k   43 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            3455677888899999999999999999999998877766

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.07  E-value=3.3  Score=28.84  Aligned_cols=48  Identities=15%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005139          219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC  267 (712)
Q Consensus       219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  267 (712)
                      +.+..+-..|..+...|. |++||+++++|...+.....-..++....+
T Consensus         6 N~AH~~~RrAer~l~~~r-ydeAIech~kA~~yl~eA~klt~s~~~l~S   53 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTESEQAHLS   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            345677788999999998 999999999999988776655555444333

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=83.04  E-value=13  Score=31.83  Aligned_cols=187  Identities=11%  Similarity=-0.026  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139          435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-RTGKLRESKSYCENALRIYEKPVPGVPP  513 (712)
Q Consensus       435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  513 (712)
                      ...+|.++...|+|++...+.++++++......+-..   .=.+.|..+|- ..|....+...+...... ..     ..
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~---eERnLLsvayKn~i~~~R~s~R~i~~ie~k-~~-----~~   77 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQTK-QL-----NN   77 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SC-----SC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc-----cc
Confidence            3456888889999999999999888875422111111   11222222221 123334444444332211 11     11


Q ss_pred             hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Q 005139          514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-VAGIEAQMGVMYY-----MLGNYSDSYDSFKNAISK  587 (712)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  587 (712)
                      ....    .+..-|.. .=-.+-...+...+.+.......... ..-.+-..|..|.     ..|..++|...|++|..+
T Consensus        78 ~~~~----~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          78 DELV----KICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             HHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             hhHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            1111    11111111 11223444556666666555433221 1112223344443     468889999999999999


Q ss_pred             HHH-hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139          588 LRA-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG  635 (712)
Q Consensus       588 ~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  635 (712)
                      +.. +.+.+|..++.+++.---.|.-+++.++|.++.++|.+.+.....
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~  201 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIK  201 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            876 455555556666666566677789999999999999766555443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.23  E-value=3.2  Score=30.31  Aligned_cols=55  Identities=20%  Similarity=0.069  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139          220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY  275 (712)
Q Consensus       220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~  275 (712)
                      .+..++..|..+-..|+ |++|+.+|.+|+..+.......+++..-..+.....-|
T Consensus        14 ~A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            45567888988999986 99999999999999877665556665555544444333

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=80.57  E-value=17  Score=31.51  Aligned_cols=168  Identities=14%  Similarity=0.106  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhCCCC
Q 005139          475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ  553 (712)
Q Consensus       475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  553 (712)
                      .-+..+|.+....++|++...+..++++....   ..-.   ..-...|..+|-. .|....+...+.......... +.
T Consensus         5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~---~~Ls---~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~-~~   77 (236)
T d1o9da_           5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGS---EELT---VEERNLLSVAYKNVIGARRASWRIISSIEQKEESR-GN   77 (236)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSS---SCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC---CCCC---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcc-CC
Confidence            34677889999999999999999999876311   0011   1223334444432 344455555554433322221 21


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCChHHHHHHHHHHHHHHHh-----C-----CHHHHH
Q 005139          554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI---GERKSAFFGVALNQMGLACVQR-----Y-----SINEAV  620 (712)
Q Consensus       554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~lg~~~~~~-----g-----~~~~A~  620 (712)
                      ....     .+..-|. ..=-++=..++...+.+....   ....+......+...|..|.-.     |     -.+.|.
T Consensus        78 ~~~~-----~~i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~  151 (236)
T d1o9da_          78 EEHV-----NSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  151 (236)
T ss_dssp             HHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             hHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence            1111     1111111 111122333444455444322   0111122223333445444321     2     256789


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139          621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI  655 (712)
Q Consensus       621 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  655 (712)
                      ..|++|..+....+.|.||-......|.+.+|+..
T Consensus       152 ~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi  186 (236)
T d1o9da_         152 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEI  186 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHH
Confidence            99999999999889999999999999999888754