Citrus Sinensis ID: 005162

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK
cccccccccccHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHcccccccccccccEEEEcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEcccEEEEEccccccccEEEEEEEEEEEcccEEEEEEEEccccccccc
ccccccccccHHHHHHHccccccccccccccccccccccccccccccHHcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEcccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccHHHHHccccEEEEcccHHHHHHHccHHccHHHHccccHHHHHHHHcHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEccccccccccccccccccccccccccccccccccccccHHEcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHcccccHccccEEEEEEccEEEEEEccEEEEEcccccccccEEEEEEEEEEEccccEEEEEEcEcccccccc
meevgaqvapsILMHQRLssrlceaptmTMTMTMAKKRHLSYQAqsqnhyggeqqnwnpklwdwdsvgfvgkpvvdsdpevlrlggatasespnkttdninynynynnqkkgnttttsavtvgnveddgrldlnlgggltavdveqpeppvvtskpnkrvrsgspgtapypmcqvdnckedlsnakdyhrrhkvceLHSKSTKALVGKQMQRFCqqcsrfhplsefdegkRSCRRRLaghnrrrrktqpeditsrmlihghgnqsnnptanVDIVNLLTALARAQgktedrsiscssvpDREQLLMILSKinslplpadLAAKLhnfgslnrktpvhtstdvqnrlnentsspsTMDLLAVLSStltapspdtlaahsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqetrvnlplqlfssspeddsppklsssrkyfssdssnpieerspssspvvqtffpmqstsetvkseklsigrevnanvegnrsrgsimplelfrgsnkaadncsfqsfpyqagytsssgsdhspsslnsdaqdcTGRIIFKLfdkdpsqfpgtLRKEIYNWLsnspsemesyirpgcvilslyvsmpyatWEQLEGNLLQRINSLvqdsdsdfwRNARFLVHtgkqlashkdgnirvckswrtwsspelisvsplavvggqelsfklrgrnltnlgtk
meevgaqvapsilmhqrlsSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLggatasespnkttdnINYNYNynnqkkgntTTTSAVTVGNVEDDGRLDLNLGGGLtavdveqpeppvvtskpnkrvrsgspgtapypmcQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRfhplsefdegkrscrrrlaghnrrrrktqpeditSRMLIhghgnqsnnptANVDIVNLLTALARAqgktedrsiscssvPDREQLLMILSKINSLPLPADLAAKLHNFGSlnrktpvhtstdvqnrlnentsspsTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqETRVNLPLQlfssspeddsppklSSSRKYFSsdssnpieerspssspvvQTFFPMQstsetvkseklsigrevnanvegnrsrgsiMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLfdkdpsqfpgTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVhtgkqlashkdgnirVCKSWRTWSspelisvsplavvggqelsfklrgrnltnlgtk
MEEVGAQVAPSILMHQRLSSRLCEAPtmtmtmtmAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPnkttdninynynynnqkkgnttttSAVTVGNVEddgrldlnlggglTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCrrrlaghnrrrrKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLsssrkyfssdssNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTsssgsdhspsslnsDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK
*****************************************************QQNWNPKLWDWDSVGFVGKPVVDS**********************INYNYNY*************VTVGNVE**GRLDLNLGGGLT************************************************HRRHKVCELH****KALVGKQMQRFCQQCSRFH*************************************************NVDIVNLLTALAR*******************QLLMILSKINSLPLPADLAAKLHNF***********************************************************************************************************************************************************************************************************************************************CTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKL***********
*****AQVAPSILMHQRLSSRL*************************************KLWDWDSVGFV***************************************************************NLGG************************************QVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS********************************************LLTA****************************************************************************************************************************************************************************************************************************************************************************************************FKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTN****
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEP***************PGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLA***********EDITSRMLIHGHGNQSNNPTANVDIVNLLTALAR*************SVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPS*************************EQATPNFLKRTTMDFP***********************ETRVNLPLQLFS***********************************VVQTFFPMQ**********LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAG****************DAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK
*****AQVAPSILMHQRLSSRLCEA*********************Q**Y**EQQNWNPKLWDWDSVGFVGKP*******************************************TSAVTVGNVEDDGRLDLNLGGGLT****************************PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAG*******************************NVDIVNLLTALARAQG*******SCSSVPDREQLLMILSKINSLPLPADL*A***N*********************************A*****LTAPSPDTLA**************************************************************VNLP**************************************SPVVQT*******S*************************SIMP*ELFRG*************************************DCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLT*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query711 2.2.26 [Sep-21-2011]
Q8RY95 1035 Squamosa promoter-binding yes no 0.893 0.613 0.559 0.0
Q700C2 988 Squamosa promoter-binding no no 0.791 0.569 0.575 1e-173
Q6Z8M8 1140 Squamosa promoter-binding yes no 0.956 0.596 0.447 1e-153
A2YX04 1140 Squamosa promoter-binding N/A no 0.956 0.596 0.447 1e-153
Q75LH6 969 Squamosa promoter-binding no no 0.286 0.210 0.422 1e-39
Q9S7P5 927 Squamosa promoter-binding no no 0.232 0.177 0.475 1e-38
Q9SMX9 881 Squamosa promoter-binding no no 0.219 0.177 0.464 3e-37
P0DI11359 Squamosa promoter-binding no no 0.122 0.242 0.643 4e-30
B9DI20359 Squamosa promoter-binding no no 0.122 0.242 0.643 4e-30
Q8GXL3333 Squamosa promoter-binding no no 0.156 0.333 0.549 2e-29
>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 Back     alignment and function desciption
 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/720 (55%), Positives = 496/720 (68%), Gaps = 85/720 (11%)

Query: 1   MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY-------QAQSQNHYGGE 53
           M+EVGAQVA  + +HQ                ++ +KR L Y       Q+Q Q      
Sbjct: 1   MDEVGAQVAAPMFIHQ----------------SLGRKRDLYYPMSNRLVQSQPQ-----R 39

Query: 54  QQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGN 113
           +  WN K+WDWDS  F  KPV   D EV                                
Sbjct: 40  RDEWNSKMWDWDSRRFEAKPV---DVEVQEFD---------------------------- 68

Query: 114 TTTTSAVTVGNVEDDGR-LDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPM 172
                 +T+ N   + R LDLNLG GLTAV+        V  +PNK+VRSGSPG   YPM
Sbjct: 69  ------LTLRNRSGEERGLDLNLGSGLTAVEETTTTTQNV--RPNKKVRSGSPG-GNYPM 119

Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS 232
           CQVDNC EDLS+AKDYHRRHKVCE+HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRS
Sbjct: 120 CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 179

Query: 233 CRRRLAGHNRRRRKT-QPEDITSRMLIHGHGNQSNN-PTANVDIVNLLTALARAQGKTED 290
           CRRRLAGHNRRRRKT QPE++ S +++ G+ + +NN   AN+D++ LLTALA AQGK   
Sbjct: 180 CRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTTNNTANANMDLMALLTALACAQGKNAV 239

Query: 291 RS-ISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNEN 349
           +  +   +VPDREQLL IL+KIN+LPLP DL +KL+N GSL RK   H + + QN +N  
Sbjct: 240 KPPVGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLARKNMDHPTVNPQNDMN-- 297

Query: 350 TSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMD 409
            +SPSTMDLLAVLS+TL + SPD LA  SQ    + DSEKTK +  E      L++ T  
Sbjct: 298 GASPSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTKLSSYENGVTTNLEKRTFG 357

Query: 410 FPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSS 469
           F SVGGERSS+S QSP +DSD + Q+TR +L LQLF+SSPED+S P ++SSRKY+SS SS
Sbjct: 358 FSSVGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPEDESRPTVASSRKYYSSASS 417

Query: 470 NPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGS 529
           NP+E+RSPSSSPV+Q  FP+Q++ ET++S+          N + +  R   +PLELF  S
Sbjct: 418 NPVEDRSPSSSPVMQELFPLQASPETMRSK----------NHKNSSPRTGCLPLELFGAS 467

Query: 530 NKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRK 589
           N+ A + +F+ F  Q+GY +SSGSD+SP SLNSDAQD TG+I+FKL DKDPSQ PGTLR 
Sbjct: 468 NRGAADPNFKGFGQQSGY-ASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRS 526

Query: 590 EIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRN 649
           EIYNWLSN PSEMESYIRPGCV+LS+YV+M  A WEQLE  LLQR+  L+Q+S SDFWRN
Sbjct: 527 EIYNWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRN 586

Query: 650 ARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLG 709
           ARF+V+TG+QLASHK+G +R  KSWRTW+SPELISVSP+AVV G+E S  +RGR+LTN G
Sbjct: 587 ARFIVNTGRQLASHKNGKVRCSKSWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDG 646
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 Back     alignment and function description
>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 Back     alignment and function description
>sp|P0DI11|SP13B_ARATH Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1 Back     alignment and function description
>sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana GN=SPL13A PE=2 SV=1 Back     alignment and function description
>sp|Q8GXL3|SPL8_ARATH Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query711
255539362 1073 Squamosa promoter-binding protein, putat 0.959 0.635 0.706 0.0
225457689 1070 PREDICTED: squamosa promoter-binding-lik 0.954 0.634 0.696 0.0
224065627 1044 predicted protein [Populus trichocarpa] 0.789 0.537 0.713 0.0
449455740 1031 PREDICTED: squamosa promoter-binding-lik 0.897 0.618 0.596 0.0
449531663 1031 PREDICTED: LOW QUALITY PROTEIN: squamosa 0.897 0.618 0.595 0.0
224083384603 predicted protein [Populus trichocarpa] 0.831 0.980 0.650 0.0
297845078 1040 hypothetical protein ARALYDRAFT_472338 [ 0.905 0.619 0.567 0.0
15218091 1035 squamosa promoter binding-like protein 1 0.893 0.613 0.559 0.0
312283549 1035 unnamed protein product [Thellungiella h 0.898 0.617 0.569 0.0
297745623 921 unnamed protein product [Vitis vinifera] 0.770 0.595 0.591 0.0
>gi|255539362|ref|XP_002510746.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223551447|gb|EEF52933.1| Squamosa promoter-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/716 (70%), Positives = 570/716 (79%), Gaps = 34/716 (4%)

Query: 1   MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQ---NW 57
           MEEVGAQVA  I +HQ LSSR C+A +M      AKKR LSYQ  +  H+   Q    NW
Sbjct: 1   MEEVGAQVASPIFIHQALSSRFCDAASM------AKKRDLSYQTSNFQHHRFPQNPRDNW 54

Query: 58  NPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTT 117
           NPK WDWDSV FV KP+ D+D  VL+LG A+ S+   KT  ++N+N    N         
Sbjct: 55  NPKAWDWDSVRFVAKPL-DADTNVLQLGTAS-SDHQKKTNASVNHNLTLKN--------- 103

Query: 118 SAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDN 177
            A   G+ EDDG L LNL G   AV     E PV  S+PNKRVRSGSPGTA YPMCQVDN
Sbjct: 104 -APPAGD-EDDG-LRLNLAGVFNAV-----EEPV--SRPNKRVRSGSPGTATYPMCQVDN 153

Query: 178 CKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL 237
           CKEDLSNAKDYHRRHKVCELHSKST+ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL
Sbjct: 154 CKEDLSNAKDYHRRHKVCELHSKSTQALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL 213

Query: 238 AGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSS 297
           AGHNRRRRKTQPED+TSR+L+ G  N+    +AN+DIVNLLTALAR QGK  D+ I+ SS
Sbjct: 214 AGHNRRRRKTQPEDVTSRLLLPG--NRDTASSANLDIVNLLTALARTQGKHADKRINASS 271

Query: 298 VPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMD 357
           +PDR+QL+ ILSKINSLPLP DLAA+L N GSLNRK P   S++ QNRL    SSPSTMD
Sbjct: 272 MPDRDQLIQILSKINSLPLPMDLAAQLSNIGSLNRKNPEQPSSEHQNRLLGTASSPSTMD 331

Query: 358 LLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQ-ATPNFLKRTTMDFPSVGGE 416
           LLAVLS+TL A +PD LA  SQRSS SSDSEK+K TC +Q A PN  KR  +DFPS+  E
Sbjct: 332 LLAVLSATLAASAPDALAFLSQRSSQSSDSEKSKLTCVDQDAGPNLQKRPIVDFPSMALE 391

Query: 417 RSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERS 476
           +SS+ YQSPVE+SD Q QE+  NLPLQLFSSSPE+ SPPKL+SSRKYFSSDSSNP E RS
Sbjct: 392 KSSSCYQSPVEESDCQLQESHPNLPLQLFSSSPEESSPPKLASSRKYFSSDSSNPSEGRS 451

Query: 477 PSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADN 535
           PSSSP V+Q  FP+QS ++TVKSEK+SI REVNAN+EG+RS GSI+PLELFRGS+  A  
Sbjct: 452 PSSSPPVMQKLFPLQSNADTVKSEKVSITREVNANIEGSRSHGSILPLELFRGSDGRAVQ 511

Query: 536 CSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWL 595
            S+QSFPYQAGYTSSSGSDHSPSS NSDAQD TGRIIFKLFDKDPS FPG LR +IYNWL
Sbjct: 512 SSYQSFPYQAGYTSSSGSDHSPSSQNSDAQDRTGRIIFKLFDKDPSHFPGKLRTQIYNWL 571

Query: 596 SNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVH 655
           SNSPSEMESYIRPGCV+LS+Y+SM  A WE+LE NLLQ+++SLVQDS SDFWR  RFL+H
Sbjct: 572 SNSPSEMESYIRPGCVVLSVYLSMSSAKWERLERNLLQQVDSLVQDSYSDFWRTGRFLLH 631

Query: 656 TGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK 711
           TG+QLASHKDGNIR+CKSWRTWSSPELISVSP+AVVGGQE S  LRGRNLTN GTK
Sbjct: 632 TGRQLASHKDGNIRLCKSWRTWSSPELISVSPVAVVGGQETSLLLRGRNLTNAGTK 687

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457689|ref|XP_002273784.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065627|ref|XP_002301891.1| predicted protein [Populus trichocarpa] gi|222843617|gb|EEE81164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455740|ref|XP_004145609.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449531663|ref|XP_004172805.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224083384|ref|XP_002307005.1| predicted protein [Populus trichocarpa] gi|222856454|gb|EEE94001.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297845078|ref|XP_002890420.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata] gi|297336262|gb|EFH66679.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218091|ref|NP_173522.1| squamosa promoter binding-like protein 14 [Arabidopsis thaliana] gi|67461574|sp|Q8RY95.3|SPL14_ARATH RecName: Full=Squamosa promoter-binding-like protein 14; AltName: Full=Protein FUMONISIN B1-RESISTANT 6; AltName: Full=SPL1-related protein 2 gi|4836890|gb|AAD30593.1|AC007369_3 Unknown protein [Arabidopsis thaliana] gi|332191929|gb|AEE30050.1| squamosa promoter binding-like protein 14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312283549|dbj|BAJ34640.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|297745623|emb|CBI40788.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query711
TAIR|locus:2037355 1035 SPL14 "squamosa promoter bindi 0.776 0.533 0.558 9.1e-167
TAIR|locus:2011706 988 AT1G76580 [Arabidopsis thalian 0.774 0.557 0.518 1.3e-143
TAIR|locus:2041329 881 SPL1 "squamosa promoter bindin 0.174 0.140 0.463 4.8e-51
TAIR|locus:2101402 927 SPL12 "squamosa promoter-bindi 0.158 0.121 0.512 1.2e-47
TAIR|locus:2159717359 SPL13A "SQUAMOSA PROMOTER-BIND 0.147 0.292 0.485 3e-23
TAIR|locus:2832472359 SPL13B "SQUAMOSA PROMOTER-BIND 0.147 0.292 0.485 3e-23
TAIR|locus:504956101333 SPL8 "squamosa promoter bindin 0.112 0.240 0.578 2.5e-20
TAIR|locus:2087105181 SPL5 "squamosa promoter bindin 0.111 0.436 0.569 8.7e-20
TAIR|locus:2026428405 AT1G69170 [Arabidopsis thalian 0.108 0.190 0.576 9.7e-19
TAIR|locus:2016014396 SPL10 "squamosa promoter bindi 0.126 0.227 0.521 2.5e-18
TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1547 (549.6 bits), Expect = 9.1e-167, Sum P(2) = 9.1e-167
 Identities = 318/569 (55%), Positives = 391/569 (68%)

Query:   144 VEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTK 203
             VE+        +PNK+VRSGSPG   YPMCQVDNC EDLS+AKDYHRRHKVCE+HSK+TK
Sbjct:    92 VEETTTTTQNVRPNKKVRSGSPG-GNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATK 150

Query:   204 ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCXXXXXXXXXXXXKT-QPEDITSRMLIHG-H 261
             ALVGKQMQRFCQQCSRFH LSEFDEGKRSC            KT QPE++ S +++ G H
Sbjct:   151 ALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVASGVVVPGNH 210

Query:   262 GNQSNNPTANVDIVNLLTALARAQGKTEDRS-ISCSSVPDREQLLMILSKINSLPLPADL 320
                +N   AN+D++ LLTALA AQGK   +  +   +VPDREQLL IL+KIN+LPLP DL
Sbjct:   211 DTTNNTANANMDLMALLTALACAQGKNAVKPPVGSPAVPDREQLLQILNKINALPLPMDL 270

Query:   321 AAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHXXX 380
              +KL+N GSL RK   H + + QN +N   +SPSTMDLLAVLS+TL + SPD LA     
Sbjct:   271 VSKLNNIGSLARKNMDHPTVNPQNDMNG--ASPSTMDLLAVLSTTLGSSSPDALAILSQG 328

Query:   381 XXXXXXXXXXXXXCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNL 440
                            E      L++ T  F SVGGERSS+S QSP +DSD + Q+TR +L
Sbjct:   329 GFGNKDSEKTKLSSYENGVTTNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSL 388

Query:   441 PLQLFSSSPEDDSPPKLXXXXXXXXXXXXNPIEERSPSSSPVVQTFFPMQSTSETVKSEK 500
              LQLF+SSPED+S P +            NP+E+RSPSSSPV+Q  FP+Q++ ET++S+ 
Sbjct:   389 SLQLFTSSPEDESRPTVASSRKYYSSASSNPVEDRSPSSSPVMQELFPLQASPETMRSK- 447

Query:   501 LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTXXXXXXXXXXXX 560
                      N + +  R   +PLELF  SN+ A + +F+ F  Q+GY             
Sbjct:   448 ---------NHKNSSPRTGCLPLELFGASNRGAADPNFKGFGQQSGYASSGSDYSPPSLN 498

Query:   561 XXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 620
               DAQD TG+I+FKL DKDPSQ PGTLR EIYNWLSN PSEMESYIRPGCV+LS+YV+M 
Sbjct:   499 S-DAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAMS 557

Query:   621 YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 680
              A WEQLE  LLQR+  L+Q+S SDFWRNARF+V+TG+QLASHK+G +R  KSWRTW+SP
Sbjct:   558 PAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSKSWRTWNSP 617

Query:   681 ELISVSPLAVVGGQELSFKLRGRNLTNLG 709
             ELISVSP+AVV G+E S  +RGR+LTN G
Sbjct:   618 ELISVSPVAVVAGEETSLVVRGRSLTNDG 646
GO:0003677 "DNA binding" evidence=IEA;ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RY95SPL14_ARATHNo assigned EC number0.55970.89310.6135yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002959001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (1026 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
pfam0311079 pfam03110, SBP, SBP domain 3e-53
>gnl|CDD|190527 pfam03110, SBP, SBP domain Back     alignment and domain information 
 Score =  177 bits (451), Expect = 3e-53
 Identities = 61/79 (77%), Positives = 65/79 (82%)

Query: 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKR 231
            CQV+ C  DLSNAKDYHRRHKVCE+HSK+   LV    QRFCQQCSRFH LSEFDEGKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 232 SCRRRLAGHNRRRRKTQPE 250
           SCRRRLAGHN RRRK QP+
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 711
PF0311079 SBP: SBP domain; InterPro: IPR004333 The SBP plant 100.0
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-36  Score=262.90  Aligned_cols=78  Identities=65%  Similarity=1.119  Sum_probs=63.1

Q ss_pred             CcccCCChhhhccchhhhccccccccccCCcEEeeCCcchhhhhhhccccCCCCccCccchHHHHHhHHHHhhccCCC
Q 005162          172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP  249 (711)
Q Consensus       172 ~CQVdGC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~qp  249 (711)
                      +||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999865

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
1wj0_A60 Solution Structure Of The Dna-Binding Domain Of Squ 1e-22
1ul4_A94 Solution Structure Of The Dna-Binding Domain Of Squ 8e-21
1ul5_A88 Solution Structure Of The Dna-binding Domain Of Squ 2e-13
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 46/55 (83%)
Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
           CQVDNC  DLS  KDYHRRHKVCE+HSK+T ALVG  MQRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 Back     alignment and structure
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query711
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 4e-42
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 2e-39
1wj0_A60 Squamosa promoter-binding protein-like 12; DNA-bin 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 Back     alignment and structure
 Score =  146 bits (370), Expect = 4e-42
 Identities = 56/93 (60%), Positives = 66/93 (70%)

Query: 163 GSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222
           GS G++   +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 223 LSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSR 255
           L EFDE KRSCRRRLAGHN RRRK+  E   S 
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 Back     alignment and structure
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query711
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 100.0
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 100.0
1wj0_A60 Squamosa promoter-binding protein-like 12; DNA-bin 99.95
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-40  Score=294.00  Aligned_cols=90  Identities=60%  Similarity=1.047  Sum_probs=80.4

Q ss_pred             CCCCCCCCCcccCCChhhhccchhhhccccccccccCCcEEeeCCcchhhhhhhccccCCCCccCccchHHHHHhHHHHh
Q 005162          164 SPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRR  243 (711)
Q Consensus       164 ~~g~~~~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~R  243 (711)
                      ++|+++.++||||||.+||+.+|.||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+|
T Consensus         2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R   81 (94)
T 1ul4_A            2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER   81 (94)
T ss_dssp             ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred             CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence            34457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCcccc
Q 005162          244 RRKTQPEDIT  253 (711)
Q Consensus       244 RRk~qp~~~~  253 (711)
                      |||++++..+
T Consensus        82 RRk~~~~~~~   91 (94)
T 1ul4_A           82 RRKSSGESGP   91 (94)
T ss_dssp             CCSCCCC---
T ss_pred             hccCCCCcCC
Confidence            9999999765
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 711
d1ul4a_81 g.72.1.1 (A:) Squamosa promoter binding protein-li 1e-46
d1ul5a_86 g.72.1.1 (A:) Squamosa promoter binding protein-li 2e-46
d1wj0a_58 g.72.1.1 (A:) Squamosa-promoter binding-like prote 1e-33
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 Back     information, alignment and structure

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  157 bits (399), Expect = 1e-46
 Identities = 52/80 (65%), Positives = 60/80 (75%)

Query: 171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGK 230
            +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH L EFDE K
Sbjct: 2   RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAK 61

Query: 231 RSCRRRLAGHNRRRRKTQPE 250
           RSCRRRLAGHN RRRK+  E
Sbjct: 62  RSCRRRLAGHNERRRKSSGE 81
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 Back     information, alignment and structure
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query711
d1ul4a_81 Squamosa promoter binding protein-like 4, DNA-bind 100.0
d1ul5a_86 Squamosa promoter binding protein-like 7, DNA-bind 100.0
d1wj0a_58 Squamosa-promoter binding-like protein 12, DNA-bin 99.95
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-39  Score=276.57  Aligned_cols=80  Identities=65%  Similarity=1.152  Sum_probs=78.2

Q ss_pred             CCcccCCChhhhccchhhhccccccccccCCcEEeeCCcchhhhhhhccccCCCCccCccchHHHHHhHHHHhhccCCCc
Q 005162          171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPE  250 (711)
Q Consensus       171 ~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~qp~  250 (711)
                      .+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999875
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure