Citrus Sinensis ID: 005164

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710

MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC

ccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEcccccccccccccccccccccccEcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccEcccHHHccccHccccccccEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccccEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccEEccc

mattvapavetsdLLQKLSLDSQtksleisehtkkpsanqygsvdsvnaaangqipsersgtpflndfmdpnmcyvpngypstafyyggydgnvgewddytryvsqdgvdmtsgvygdngslmyhhgygyapyppyspatspvptmgtdgqlygpqhyqyphyfqpitptsspyspspvaptpgdiptsvaadqkplpvestngksngvanaggvkgnngsapfkptyqpfnsnntygrgslpgrgpasgyqdprcnldgmrspipwldgpvisdarpvasntfnssiSNVNNvassrnqnyrpnshymglhhprpmsgmgaaqgfmnmnrmypnklygqygntfrsgvgfgsngydlrtngrgwlsvdgkyksrgrgngyfgygnenmdglnelnrgprakgaknqkgsapnalpvkeqnvltngtaedendkislspdrdeynkadfpeeytdAKFFVIKsyseddvhksIKYSVwastpngnkkLDAAYQEAQqksrscpvflLFSVNtsgqfvglaemagpvdfnknveywqqdkwtgcfpvkwhivkdvpnsLLKHItlennenkpvtnsrdtQEIKLEQGLKLIKIFkdhpsktcilddfgfYETRQKTIQEKKAKQQQFQKQVwegkpaeeKKELAngelktqkssEVASDLVEERtttvqsngdlrlsengsvaktgdahkgskpvvVSEKVILANGVANGC

mattvapavetsdllqklsLDSQTKSLEisehtkkpsanqygsVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRgwlsvdgkyksrgrgNGYFGYGNENMDGLNELNRGPRAKGAknqkgsapnalpvkeqnvltngtaedendkislspdrdeynkadfpeeytDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHitlennenkpvtnsrdtqeIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQFQkqvwegkpaeekkelangelktqkssevasdlveertttvqsngdlrlsengsvaktgdahkgskpvvvsekvilangvangc

MATTVAPAVEtsdllqklsldsqtkslEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMyhhgygyapyppyspatspvptMGTDGQLYGPQHYQYPHYFQpitptsspyspspvaptpGDIPTSVAADQKPLPVESTNGKSngvanaggvkgnngSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVAsntfnssisnvnnvassrnqnYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSrgrgngyfgygnENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIqekkakqqqfqkqVWEGKPAEEKKELANGELKTQKSSEVASDLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC

***************************************************************FLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPY*************GQLYGPQHYQYPHYFQP**************************************************************************************************IPWLDGPVI***************************************************GFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYG******************************************************************EYTDAKFFVIKSYSEDDVHKSIKYSVWAS********************SCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITL****************IKLEQGLKLIKIFKDHPSKTCILDDFGFYETR***************************************************************************************VIL********

*****************************************************************************NGYPSTAFYYG*YD*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGF***********************************************************************************************N***NG*

*********ETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPT***********TPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGP************PNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDA*********RSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKT*******************PAEEKKELAN*************************NGDLRLSENGSV**********KPVVVSEKVILANGVANGC

**********************************************************RSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPY**********DIPT******KPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA*P********************************************AQ***NMNRMYPNKLYGQYGNTFRSGVGFGSN*Y*LRTNGRGW**********************NMDGL*****************************************KISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA*****************************************************************************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		710	2.2.26 [Sep-21-2011]
Q9Y5A9		579	YTH domain family protein	yes	no	0.253	0.310	0.540	9e-53
Q4R5D9		579	YTH domain family protein	N/A	no	0.253	0.310	0.540	1e-52
Q0VCZ3		580	YTH domain family protein	yes	no	0.253	0.310	0.540	1e-52
P59326		559	YTH domain family protein	no	no	0.309	0.393	0.460	2e-51
Q9BYJ9		559	YTH domain family protein	no	no	0.257	0.327	0.516	6e-51
Q8BYK6		585	YTH domain family protein	no	no	0.233	0.283	0.556	1e-49
Q5RFL8		585	YTH domain family protein	no	no	0.233	0.283	0.556	2e-49
Q7Z739		585	YTH domain family protein	no	no	0.233	0.283	0.556	2e-49
Q06390		306	YTH domain-containing pro	yes	no	0.208	0.483	0.401	6e-25
Q96MU7		727	YTH domain-containing pro	no	no	0.187	0.182	0.331	1e-14

>sp\|Q9Y5A9\|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2	Back alignment and function desciption

 Score =  208 bits (530), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 3/183 (1%)

Query: 442 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 501
           + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K   
Sbjct: 396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-- 453

Query: 502 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 561
            PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+H
Sbjct: 454 -PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRH 512

Query: 562 ITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKA 621
           I LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+  +  K 
Sbjct: 513 IRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK 572

Query: 622 KQQ 624
           ++Q
Sbjct: 573 ERQ 575

Homo sapiens (taxid: 9606)

>sp\|Q4R5D9\|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1	Back alignment and function description

>sp\|Q0VCZ3\|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1	Back alignment and function description

>sp\|P59326\|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1	Back alignment and function description

>sp\|Q9BYJ9\|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1	Back alignment and function description

>sp\|Q8BYK6\|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2	Back alignment and function description

>sp\|Q5RFL8\|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1	Back alignment and function description

>sp\|Q7Z739\|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1	Back alignment and function description

>sp\|Q06390\|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1	Back alignment and function description

>sp\|Q96MU7\|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		710
225435800		705	PREDICTED: uncharacterized protein LOC10	0.983	0.990	0.734	0.0
356525319		707	PREDICTED: uncharacterized protein LOC10	0.988	0.992	0.707	0.0
297746505		675	unnamed protein product [Vitis vinifera]	0.942	0.991	0.710	0.0
356525321		659	PREDICTED: uncharacterized protein LOC10	0.921	0.992	0.653	0.0
357519269		677	YTH domain family protein [Medicago trun	0.936	0.982	0.666	0.0
356512580		660	PREDICTED: uncharacterized protein LOC10	0.922	0.992	0.646	0.0
449452630		704	PREDICTED: uncharacterized protein LOC10	0.976	0.984	0.692	0.0
255544682		636	yth domain-containing protein, putative	0.894	0.998	0.623	0.0
297739755		694	unnamed protein product [Vitis vinifera]	0.964	0.987	0.593	0.0
118489688		615	unknown [Populus trichocarpa x Populus d	0.860	0.993	0.655	0.0

>gi\|225435800\|ref\|XP_002285750.1\| PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/713 (73%), Positives = 595/713 (83%), Gaps = 15/713 (2%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERS 60
           MA    PA + ++LLQKLSLDSQTK+LEI E TKKPS NQ+G+VD  +AA       ERS
Sbjct: 1   MAAVAPPADQAAELLQKLSLDSQTKTLEIPEPTKKPSGNQFGAVDGGDAANGQNQSCERS 60

Query: 61  GTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNG 120
            TP L +FMDP++CYVPNG   +++YYGGYDG   EW+DY+RY++ +GV+M +GVYGDNG
Sbjct: 61  VTPLLQEFMDPSVCYVPNG--YSSYYYGGYDGTTNEWEDYSRYMNPEGVEMPAGVYGDNG 118

Query: 121 SLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPV 179
           SLMYHHGYGYAPY PY PA SPVPT+G DGQLYGPQHYQYP  YFQP TPTS PY+PSP 
Sbjct: 119 SLMYHHGYGYAPYGPYPPAGSPVPTVGHDGQLYGPQHYQYPAPYFQPPTPTSGPYNPSPG 178

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTY 237
           AP PG++ TSVAADQKPL VE+ NG SNG+A+ G +KGNNGSAP KPTYQ  PFNSN +Y
Sbjct: 179 APPPGEVTTSVAADQKPLSVETANGNSNGIASGGAMKGNNGSAPVKPTYQNSPFNSNGSY 238

Query: 238 GRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASS 297
           GRG+LPG  PASGYQDPR   DG+RSP+PWLDGPV SD RPV S +  SSISN NNV +S
Sbjct: 239 GRGALPGGVPASGYQDPRFAFDGLRSPLPWLDGPVFSDPRPVTSTSITSSISNANNVTAS 298

Query: 298 RNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYD 357
           RN   RP+SH+MGL HPRPMSGMG A GFMN  RMYPNKLYGQYGNT RSG+GFGSN YD
Sbjct: 299 RN--LRPHSHFMGLQHPRPMSGMGTAHGFMN--RMYPNKLYGQYGNTVRSGLGFGSNAYD 354

Query: 358 LRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPV 417
            RTNGR WL+VD KYK RGRG G+FGYGNENMDGLNELNRGPRAK +KNQKG AP  +  
Sbjct: 355 SRTNGRSWLAVDNKYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAP--VTA 412

Query: 418 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 477
           K QNV +NG+ ++E D+ S+ PDRD+YN ADFP E+T+AKFF+IKSYSEDDVHKSIKY+V
Sbjct: 413 KGQNVQSNGSNDEEKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNV 472

Query: 478 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 537
           WASTPNGNKKLDAAY+EAQ+KS  CPVFL FSVNTSGQFVGLAEM G VDF+KNVEYWQQ
Sbjct: 473 WASTPNGNKKLDAAYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQ 532

Query: 538 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHP 597
           DKW GCF VKWH+VKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGL+++KIFK+H 
Sbjct: 533 DKWNGCFSVKWHVVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLQMLKIFKEHC 592

Query: 598 SKTCILDDFGFYETRQKTIQEKKAKQQQFQKQVWEGKPAEEKKELANGELKTQKSSEVAS 657
           SKTCILDDF FYE+RQKTIQEKKAKQQQFQKQVWEGKP +EK    NGELK QKS EVAS
Sbjct: 593 SKTCILDDFAFYESRQKTIQEKKAKQQQFQKQVWEGKPTDEK----NGELKPQKSLEVAS 648

Query: 658 DLVEERTTTVQSNGDLRLSENGSVAKTGDAHKGSKPVVVSEKVILANGVANGC 710
           DL++E T  VQ+NGD ++ ENGSVAK+GDA K  KP +VSEK I+ANGVANG 
Sbjct: 649 DLIKESTPAVQANGDRKVFENGSVAKSGDAPKAFKPSIVSEKRIVANGVANGV 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356525319\|ref\|XP_003531272.1\| PREDICTED: uncharacterized protein LOC100819200 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|297746505\|emb\|CBI16561.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356525321\|ref\|XP_003531273.1\| PREDICTED: uncharacterized protein LOC100819200 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|357519269\|ref\|XP_003629923.1\| YTH domain family protein [Medicago truncatula] gi\|355523945\|gb\|AET04399.1\| YTH domain family protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356512580\|ref\|XP_003524996.1\| PREDICTED: uncharacterized protein LOC100807919 [Glycine max]	Back alignment and taxonomy information

>gi\|449452630\|ref\|XP_004144062.1\| PREDICTED: uncharacterized protein LOC101215929 [Cucumis sativus] gi\|449493566\|ref\|XP_004159352.1\| PREDICTED: uncharacterized LOC101215929 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255544682\|ref\|XP_002513402.1\| yth domain-containing protein, putative [Ricinus communis] gi\|223547310\|gb\|EEF48805.1\| yth domain-containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297739755\|emb\|CBI29937.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|118489688\|gb\|ABK96645.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		710
TAIR\|locus:2092815		667	ECT2 "evolutionarily conserved	0.921	0.980	0.513	8e-172
TAIR\|locus:2159391		495	ECT3 "AT5G61020" [Arabidopsis	0.425	0.610	0.631	3.5e-105
TAIR\|locus:2095938		428	ECT1 "evolutionarily conserved	0.422	0.700	0.548	1e-90
TAIR\|locus:2089280		634	ECT5 "AT3G13060" [Arabidopsis	0.408	0.457	0.515	2.4e-89
TAIR\|locus:2023807		639	ECT7 "AT1G48110" [Arabidopsis	0.304	0.338	0.580	4.3e-74
TAIR\|locus:2088995		595	ECT6 "AT3G17330" [Arabidopsis	0.297	0.354	0.601	6e-72
TAIR\|locus:2207405		528	ECT8 "AT1G79270" [Arabidopsis	0.311	0.418	0.573	1.6e-71
TAIR\|locus:2161213		528	ECT10 "evolutionarily conserve	0.288	0.388	0.544	5.3e-69
TAIR\|locus:2010494		539	ECT9 "AT1G27960" [Arabidopsis	0.253	0.333	0.651	6.8e-65
TAIR\|locus:2024286		470	ECT11 "AT1G09810" [Arabidopsis	0.298	0.451	0.554	3.8e-62

TAIR\|locus:2092815 ECT2 "evolutionarily conserved C-terminal region 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
 Identities = 356/693 (51%), Positives = 421/693 (60%)

Query:     1 MATTVAPAVEXXXXXXXXXXXXXXXXXEISEHTKKPSANQYGSVDSVNAAANGQIPS-ER 59
             MAT   PA +                 EI E  KK +  QYG VD      +GQ+PS +R
Sbjct:     1 MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVD-----VHGQVPSYDR 55

Query:    60 SGTPFL-NDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGD 118
             S TP L +D  DP++CYVPN Y +   YY  Y G+  EW DY  Y + +GVDM SG+YG+
Sbjct:    56 SLTPMLPSDAADPSVCYVPNPY-NPYQYYNVY-GSGQEWTDYPAYTNPEGVDMNSGIYGE 113

Query:   119 NGSLMXXXXXXXXXXXXXXXXXXXXXXMGTDGQLYGPQHYQYPHYFQXXXXXXXXXXXXX 178
             NG+++                      +G +GQLYG Q YQYP+YF              
Sbjct:   114 NGTVVYPQGYGYAAYPYSPATSPAPQ-LGGEGQLYGAQQYQYPNYFPNSGPYASSVATPT 172

Query:   179 XXXXXGDIPTSVAADQKPLPVESTNGKSXXXXXXXXXXXXXXSAPFKPTYQP-FN-SNNT 236
                   + P  V    K LP +S N  S              SAP KPT Q   N S+N 
Sbjct:   173 QPDLSANKPAGV----KTLPADSNNVASAAGITKGSNG----SAPVKPTNQATLNTSSNL 224

Query:   237 YGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA-RPVAXXXXXXXXXXXXXXX 295
             YG G+ PG G A+GYQDPR   +G  +P+PW DG   SD  RPV+               
Sbjct:   225 YGMGA-PGGGLAAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVP 283

Query:   296 XXXXXXYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNG 355
                   YR NSHY  +H P  ++G G AQG+ N  RMY NKLYGQYG+T RS +G+GS+G
Sbjct:   284 SSRNQNYRSNSHYTSVHQPSSVTGYGTAQGYYN--RMYQNKLYGQYGSTGRSALGYGSSG 341

Query:   356 YDLRTNGRGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNAL 415
             YD RTNGRGW + D KY+S             N+DGLNELNRGPRAKG KNQKG+  ++L
Sbjct:   342 YDSRTNGRGWAATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSL 401

Query:   416 PVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKY 475
              VKEQ   +N T   E D   + PDR++YNK DFP +Y +A FF+IKSYSEDDVHKSIKY
Sbjct:   402 EVKEQTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKY 461

Query:   476 SVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW 535
             +VWASTPNGNKKL AAYQEAQQK+  CP+FL FSVN SGQFVGLAEM GPVDFN NVEYW
Sbjct:   462 NVWASTPNGNKKLAAAYQEAQQKAGGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYW 521

Query:   536 QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKD 595
             QQDKWTG FP+KWHIVKDVPNSLLKHITLENNENKPVTNSRDTQE+KLEQGLK++KIFK+
Sbjct:   522 QQDKWTGSFPLKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLKIVKIFKE 581

Query:   596 HPSKTCILDDFGFYETRQKTIXXXXXXXXXXXXXVWEGKPAEEKKELANGELKTQKSSEV 655
             H SKTCILDDF FYE RQKTI             V E K  +EKKE A  E    K S  
Sbjct:   582 HSSKTCILDDFSFYEVRQKTILEKKAKQTQKQ--VSEEKVTDEKKESATAE-SASKESPA 638

Query:   656 ASDLVEERTTTVQSNGDLRLSENGSVAK--TGD 686
             A          VQ++ D++++ENGSVAK  TGD
Sbjct:   639 A----------VQTSSDVKVAENGSVAKPVTGD 661

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2159391 ECT3 "AT5G61020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2095938 ECT1 "evolutionarily conserved C-terminal region 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2089280 ECT5 "AT3G13060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2023807 ECT7 "AT1G48110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088995 ECT6 "AT3G17330" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2207405 ECT8 "AT1G79270" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161213 ECT10 "evolutionarily conserved C-terminal region 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010494 ECT9 "AT1G27960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024286 ECT11 "AT1G09810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ECT2	ECT2; protein binding; Physically interacts with CIPK1. (667 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	CIPK1	CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase/ protein binding; Encodes a CBL-interacting pr [...] (444 aa)		•	•	0.982
	ATRABG3A	Ras-related GTP-binding protein, putative; ATRABG3A; FUNCTIONS IN- protein binding, GTP binding [...] (217 aa)			•	0.919
	RCY1	RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator; Encodes an ania-6a ty [...] (416 aa)	•		•	0.901
	CIPK2	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/ [...] (456 aa)			•	0.718
	CIPK5	CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); ATP binding / kinase/ protein kinase/ protein serine/ [...] (445 aa)			•	0.679
	AT5G63700	zinc finger (C3HC4 type RING finger) family protein; zinc finger (C3HC4 type RING finger) famil [...] (571 aa)			•	0.679
	PRH75	PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding; DEAD/DEAH box RNA helicase PRH7 [...] (671 aa)	•			0.651
	SIP3	SIP3 (SOS3-INTERACTING PROTEIN 3); ATP binding / kinase/ protein kinase/ protein serine/threoni [...] (441 aa)			•	0.625
	AT3G59020	binding / protein transporter; binding / protein transporter; FUNCTIONS IN- protein transporter [...] (1030 aa)	•			0.609
	AT1G76170	ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- tRNA processing; LOCATED IN- [...] (332 aa)			•	0.575

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		710
pfam04146		135	pfam04146, YTH, YT521-B-like domain	4e-68

>gnl\|CDD\|217926 pfam04146, YTH, YT521-B-like domain	Back alignment and domain information

 Score =  219 bits (560), Expect = 4e-68
 Identities = 76/141 (53%), Positives = 99/141 (70%), Gaps = 8/141 (5%)

Query: 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 516
           +FF+IKSY+ED+VH SIKY VWAST + NKKL+ A++EA+      PV+L+FSVN SG+F
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAE------PVYLIFSVNKSGKF 54

Query: 517 VGLAEMAGPVDFNK--NVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTN 574
            G A M  P+DF+   N +     KW G F V+W  VKD+P   L+H+   NNENKPVT 
Sbjct: 55  CGYARMTSPIDFDSTANSQDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKPVTI 114

Query: 575 SRDTQEIKLEQGLKLIKIFKD 595
           SRD QEI+ E G +L+KIFK+
Sbjct: 115 SRDGQEIEPEIGEELLKIFKN 135

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		710
KOG1901		487	consensus Uncharacterized high-glucose-regulated p	100.0
PF04146		140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902		441	consensus Putative signal transduction protein inv	100.0
PRK00809		144	hypothetical protein; Provisional	94.18
PF01878		143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	80.94

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.7e-83  Score=691.83  Aligned_cols=459  Identities=44%  Similarity=0.666  Sum_probs=328.3

Q ss_pred             CCCCCCcccccccCCCCccCccccCCCCcccc-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 005164           93 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT  168 (710)
Q Consensus        93 ~~~~W~~y~~Yvn~dg~e~~~gvy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQly~~q~y~yp-~yyq~~~  168 (710)
                      .+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++  .||.|+++   .++++|.|++++.+|++++. ++|-   
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~---   74 (487)
T KOG1901|consen    3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYG---   74 (487)
T ss_pred             CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcC---
Confidence            4456 899999999994434 44555555444 333333  23444433   34588999999999999997 5554   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005164          169 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA  248 (710)
Q Consensus       169 ~~~~~y~~s~~~~~q~e~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~~~gsyg~g~~~~~~p~  248 (710)
                      +...|+........++++.......   ...+..+.            +.  +.+..|...   ..+.++ ..-+.+.|.
T Consensus        75 ~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~--~~~~~p~~~---~~~~~~-~~~~~~~~~  133 (487)
T KOG1901|consen   75 PVSLPTASTSGSSTFSNLTLRKAPG---FSSSGPKQ------------GG--SMPSDPRGS---AQRNSS-ISASPGYPP  133 (487)
T ss_pred             cccCccccccCcccccchhhhcccc---cccccccc------------Cc--CCCCCCccc---cccccc-ccCCCCCCC
Confidence            2223333333333344443322221   01111111            10  122222221   111121 122223444


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 005164          249 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM  327 (710)
Q Consensus       249 ~gy~~~~~~~~g~~~~~~w~d~~~~s~~~~~~~~~~s~s~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~  327 (710)
                      .+|.+|++.++.....                                 +..++..+.+++.+....+.+.++ ...+|+
T Consensus       134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  180 (487)
T KOG1901|consen  134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY  180 (487)
T ss_pred             cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence            5777777666541100                                 112222223333333344444433 345666


Q ss_pred             ccCccCC-CccccCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCC-CCccccccccCCCCCCCCC
Q 005164          328 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGN-ENMDGLNELNRGPRAKGAK  405 (710)
Q Consensus       328 ~~~~~y~-~~~y~~~g~~~~~~~~~g~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~-~~~d~~~e~nrgpr~~~~~  405 (710)
                        +.++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+.. ......+ ...+.++|+|||||+...+
T Consensus       181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nrg~~s~~~~  257 (487)
T KOG1901|consen  181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGIN-YPRLPSDEAGSDSLNEQNRGPRSSDSR  257 (487)
T ss_pred             --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccccc-CCCccccccccccccccccCccccccc
Confidence              55555 34566666555668889999999889999999999765544422 2222333 2378899999999999999


Q ss_pred             CCCCCCCCcccccccccccCCCCcccCCcccCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchh
Q 005164          406 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN  485 (710)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~y~~ARFFIIKS~nEdNIhkSIKyGVWaTTp~nn  485 (710)
                      ++.........+...+.         .+...+++++++||+++|...|.+||||||||++|||||+||||+|||+|.++|
T Consensus       258 ~~~~~~~~~~~~~~~s~---------~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN  328 (487)
T KOG1901|consen  258 GQDINSSGPTEAGSASA---------PESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN  328 (487)
T ss_pred             CccccCCcchhcccccc---------ccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence            88755543333322111         111256889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhccccccCccceeEEEeecCCCccccccccC
Q 005164          486 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE  565 (710)
Q Consensus       486 kKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~~~WqqdKw~G~F~VkWi~vkDVPf~~lrHI~N~  565 (710)
                      ||||+|||+++.+.++||||||||||+||||||+|||++||||+++++|||||||.|.|+||||+||||||..||||+++
T Consensus       329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le  408 (487)
T KOG1901|consen  329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE  408 (487)
T ss_pred             hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeecCCCcccchHHHHHHHHHHhcCCCCcccccchhhhHHHHHHHHHHHHHhHH
Q 005164          566 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQ  625 (710)
Q Consensus       566 ~NeNKPVt~SRDgQEIe~e~G~qLLkIF~~~~~~tSILDDF~~Ye~rek~~~e~r~~~~~  625 (710)
                      +|||||||++||+|||.+++|+|||+||+++.++|||||||.|||+||+.|+++|+|+..
T Consensus       409 NNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~  468 (487)
T KOG1901|consen  409 NNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP  468 (487)
T ss_pred             cCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence            999999999999999999999999999999999999999999999999999999998864

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []	Back alignment and domain information

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]	Back alignment and domain information

>PRK00809 hypothetical protein; Provisional	Back alignment and domain information

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		710
2yud_A		180	Solution Structure Of The Yth Domain In Yth Domain-		6e-15
2yu6_A		141	Solution Structure Of The Yth Domain In Yth Domain-		5e-12

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Back alignment and structure

Iteration: 1

Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%) Query: 455 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 514 DA+FF+IKS + ++V + VW++ P KKL+ A++ A+ V L+FSV SG Sbjct: 25 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 78 Query: 515 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 568 +F G A ++ + +W G F + W +++P + H+T NE Sbjct: 79 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138 Query: 569 NKPVTNSRDTQEIKLEQGLKLIKIF 593 +KPV RD QEI+LE G +L +F Sbjct: 139 HKPVKIGRDGQEIELECGTQLCLLF 163

PyMOL of 2yud

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		710
2yu6_A		141	YTH domain-containing protein 2; structural genomi	5e-62
2yud_A		180	YTH domain-containing protein 1; structure genomic	6e-61
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3h0g_A		1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-07
1twf_A		1733	B220, DNA-directed RNA polymerase II largest subun	6e-06
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141	Back alignment and structure

 Score =  202 bits (516), Expect = 5e-62
 Identities = 40/143 (27%), Positives = 77/143 (53%), Gaps = 7/143 (4%)

Query: 452 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN 511
             +  ++F++KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV 
Sbjct: 4   GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQ 57

Query: 512 TSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKP 571
            SG F G + M+  +   K+   W      G F V+W   + +P     H+    N+NK 
Sbjct: 58  GSGHFQGFSRMSSEIGREKSQ-DWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116

Query: 572 VTNSRDTQEIKLEQGLKLIKIFK 594
           V  SRD QE++ + G +L+++++
Sbjct: 117 VQISRDGQELEPQVGEQLLQLWE 139

PyMOL of 2yu6

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752	Back alignment and structure

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		710
2yud_A		180	YTH domain-containing protein 1; structure genomic	100.0
2yu6_A		141	YTH domain-containing protein 2; structural genomi	100.0
2hd9_A		145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	96.17
2p5d_A		147	UPF0310 protein mjecl36; NPPSFA, national project	94.96

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.5e-54  Score=419.44  Aligned_cols=166  Identities=31%  Similarity=0.531  Sum_probs=156.3

Q ss_pred             cCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 005164          436 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ  515 (710)
Q Consensus       436 ~~~~~~~qyN~~df~~~y~~ARFFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGq  515 (710)
                      ...+++++||+.++..  +++|||||||++++|||+||+||||+||++||++|++||+++      .+||||||||+||+
T Consensus         8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~   79 (180)
T 2yud_A            8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK   79 (180)
T ss_dssp             CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred             hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence            4466789999988774  899999999999999999999999999999999999999997      48999999999999


Q ss_pred             eeEEEEecCCCCCCCCchhhc------cccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 005164          516 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL  589 (710)
Q Consensus       516 FqG~AeM~SpVDf~ks~~~Wq------qdKw~G~F~VkWi~vkDVPf~~lrHI~N~~NeNKPVt~SRDgQEIe~e~G~qL  589 (710)
                      |||||||+++++++....+|+      +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus        80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L  159 (180)
T 2yud_A           80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL  159 (180)
T ss_dssp             EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred             EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence            999999999999988888996      46799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccchhhhHHHHHHH
Q 005164          590 IKIFKDHPSKTCILDDFGFYETRQKTI  616 (710)
Q Consensus       590 LkIF~~~~~~tSILDDF~~Ye~rek~~  616 (710)
                      |+||+.+       ++|++|+.|+|+.
T Consensus       160 ~~lf~~~-------~~~~~~~~~~~~~  179 (180)
T 2yud_A          160 CLLFPPD-------ESIDLYQVIHKMR  179 (180)
T ss_dssp             HHHSCCC-------SSSCSHHHHHHHH
T ss_pred             HHhcccC-------cCccHHHHHHhhc
Confidence            9999986       5799999999864

PyMOL of 2yud

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A	Back alignment and structure

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		710
d2hd9a1		145	Hypothetical protein PH1033 {Pyrococcus horikoshii	93.87

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.87  E-value=0.058  Score=48.39  Aligned_cols=123  Identities=11%  Similarity=0.160  Sum_probs=76.1

Q ss_pred             EEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeEEEEecCCCCCC
Q 005164          458 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDFN  529 (710)
Q Consensus       458 FFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~S--------GqFqG~AeM~SpVDf~  529 (710)
                      |+|+=+ ++||+...++.|+|.......+.|+..        ....-+||++....        +.|.|+++.++..-.+
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~ri--------kpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d   73 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSRV--------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTTC--------CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhhC--------CCCCEEEEEeCccccCCCcccccEEEEEEEEeccceec
Confidence            555544 799999999999999875544433332        23467888875433        4799999999876444


Q ss_pred             CCchhhccccccC-----ccceeEEEeecCCCccc----cccccCCCCCCceeecCC-CcccchHHHHHHHHH
Q 005164          530 KNVEYWQQDKWTG-----CFPVKWHIVKDVPNSLL----KHITLENNENKPVTNSRD-TQEIKLEQGLKLIKI  592 (710)
Q Consensus       530 ks~~~WqqdKw~G-----~F~VkWi~vkDVPf~~l----rHI~N~~NeNKPVt~SRD-gQEIe~e~G~qLLkI  592 (710)
                      .+ ..|...+.++     -++|+|+.+.+||+..+    +.|+++-+  =....-|- -.||+.+....|-++
T Consensus        74 ~t-~i~~~~~~~~~~~P~R~~v~~~~~~ev~i~~l~~~L~fi~~k~~--W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          74 FS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKR--WSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTT--GGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             cc-ccccccccCCceEEEEEEeEEeecccccHHHHHhHHHhhcCchh--hhHHHhcCCceecCHHHHHHHHHH
Confidence            33 3465443322     37799999999997642    23332211  11222343 346777766665544

PyMOL of d2hd9a1