Citrus Sinensis ID: 005228

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------
MLSRDNLVCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
ccccccccccccccHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHccccccccccccccccccccccccEEEEcccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccHHHHHHHHccccccccc
cccHHHHHHHccHccHcccccHHHcccccHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHcccEEccccccccccccccccEEccccccccccccccccccccccccccccccEEEccccccHHcccccccccccccccccccHHccccccccccccccccccccccccEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccEcccccccccccccccccEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccHHHHHHHHHccccccc
mlsrdnlvcqtsasdlniagpellkwdvhpfimhkralmpkcaLQHLKDTILEGTHPLAaslketsgltcvsecgtarvgdldhnaqamsekenllpstcenrdgqprdnlhirnmlpfkrsrgdmAIRDVAahtngvqekcdlNYNAKKHKQDaisnhqsadqisvptcgketveplsgrdvavagregshfsnqsqdagleesqfpddgcdncddlrrlgqngdvnddqiqhnqaedghnaarlpraepvqnatvdeanitervpsvgtqhedtedesrgevehsceeetlsdndayhndridvavkkshflssqaalghdslatsgwteqnlcvkcnkdgqllscssstcplavhenclgfpvkfdekgnfhcpfcayTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLanklhskdpghsgsngdkdihengnvgeqennqenqngqhlhdVSDQLCQKHRAkkkkaeplhdvsdplcqrhsankkkaetsascvnanspcreeeanafsgrdcisngdKVVEenmdnycpserglegqpertppecgklactntyvepmddTEAEAKLQkedvqpassessdppespvialnideeeiseseddkfiisnysirfrrpkthytyppipqlrrkkvpwtAKEEEILKKGVQKfasvddriipwKKILEFgssvffsgrtaidlkdkwrnmckgsprsk
mlsrdnlvcqtsasdlniagpelLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEkenllpstcenrdgqprdnlHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISnhqsadqisvptcgkETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGhnaarlpraepvqnatvdeanitervpsvgtqhedtedesrgeVEHSCEEetlsdndayhNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKkaeplhdvsdplcQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVqpassessdppespvIALNIdeeeiseseddkfiisnysirfrrpkthytyppipqlrrkkvpwTAKEEEIlkkgvqkfasvddriipwkkilefgssvffsgrtaidlkdkwrnmckgsprsk
MLSRDNLVCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHengnvgeqennqenqngqHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQpassessdppespVIALNideeeiseseddkfiisNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
*******VCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVG***********************************************IRDVAAHT**V***C****************************************************************************************************************************************************************RIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQM*******************************************************************************************************************************************************************************************************KFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM********
********CQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETS***************************************************************************************************************************************************************************************************************************************************************************NLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKK**SVARKELAAFMQM*****************************************************************************************************************************************************************************************************************ISNYS*******************RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN**K******
MLSRDNLVCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAK****************SVPTCGKETVEPLSGRDVAVAGR*******************PDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVP************************TLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLH*********NGDKDIHENGNVGEQENNQENQNGQHLHDVSDQ**************LHDVSDPLCQR**************************NAFSGRDCISNGDKVVEENMDNYCPSE************ECGKLACTNTYVEPMDDTEAE*********************PVIALNIDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
****DNLVCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARV*DLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMA************EKCDLNYNAK*HKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREG***********LE*****D**CDNC**L***************************************************************************************************************WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLAN**********************************************************************************************************************************************************************************************************SIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK******
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MLSRDNLVCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKETSGLTCVSECGTARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLHIRNMLPFKRSRGDMAIRDVAAHTNGVQEKCDLNYNAKKHKQDAISNHQSADQISVPTCGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVNDDQIQHNQAEDGHNAARLPRAEPVQNATVDEANITERVPSVGTQHEDTEDESRGEVEHSCEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSNGDKDIHENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPLCQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISNGDKVVEENMDNYCPSERGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALNIDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
224139856 827 predicted protein [Populus trichocarpa] 0.925 0.790 0.403 1e-117
255571552 814 conserved hypothetical protein [Ricinus 0.923 0.802 0.389 1e-112
297739691774 unnamed protein product [Vitis vinifera] 0.654 0.598 0.341 8e-67
147846688774 hypothetical protein VITISV_016915 [Viti 0.654 0.598 0.341 1e-66
357445323473 PHD finger protein 21A [Medicago truncat 0.486 0.727 0.360 3e-45
224087048575 predicted protein [Populus trichocarpa] 0.379 0.466 0.400 3e-35
62733346 932 hypothetical protein [Oryza sativa Japon 0.490 0.372 0.294 6e-29
413935052 942 putative homeodomain-like transcription 0.471 0.353 0.287 2e-26
413935053 938 putative homeodomain-like transcription 0.471 0.355 0.287 3e-26
242061730 961 hypothetical protein SORBIDRAFT_04g02076 0.479 0.352 0.263 3e-23
>gi|224139856|ref|XP_002323310.1| predicted protein [Populus trichocarpa] gi|222867940|gb|EEF05071.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/765 (40%), Positives = 411/765 (53%), Gaps = 111/765 (14%)

Query: 6   NLVCQTSASDLNIAGPELLKWDVHPFIMHKRALMPKCALQHLKDTILEGTHPLAASLKET 65
           +++ +TS SDLN  GPELLKWD+HPFIMHKRA MPKCAL+ +KD ILEG HP A SLKE 
Sbjct: 111 SILQETSVSDLNRGGPELLKWDIHPFIMHKRACMPKCALEKVKDAILEGIHPYA-SLKEY 169

Query: 66  SGLTCVSECG-------------TARVGDLDHNAQAMSEKENLLPSTCENRDGQPRDNLH 112
           S L   ++ G               R+G  D + Q    +E+ +P   EN +    DN +
Sbjct: 170 SELVNANDRGNRITTDYGDDGAPVGRIGGSDTDGQINPPEESSIPLLHEN-ENVVEDNSY 228

Query: 113 IRNMLPFKRSRGDMAIRDVAA--HTNGVQEKCDLNYNAKKHKQDAISNHQSADQIS-VPT 169
            RN+L F+R R   A +++A      G  +   L   AK+ K+DA+ ++ S  QIS  P 
Sbjct: 229 NRNLLHFERERSGSASQNLAGDHEDQGCVDGDHLQPQAKRFKEDALHDNLSMGQISSTPP 288

Query: 170 CGKETVEPLSGRDVAVAGREGSHFSNQSQDAGLEESQFPDDGCDNCDDLRRLGQNGDVND 229
             K+ VE      V  +     H   +S   GLE S   ++  D    + R G + D  D
Sbjct: 289 QHKDMVEDSFEMVVEDSENRDFHLEKESSQGGLEGSIPVENDHDEDVGIDRHGHSLDA-D 347

Query: 230 DQIQHNQAEDGHNAARLPRAEPV--QNATVDEANITE-----RVPSVGTQHEDTEDESRG 282
           +  QHNQ E  HNA ++P +     Q + VDE N  E       PSVGT      + ++G
Sbjct: 348 NAFQHNQHEIAHNANKMPLSGDGLHQYSFVDEINRAEPRKSNAAPSVGTSDRLFVNGNKG 407

Query: 283 EVEHSCEEE---TLSDN------DA---------------------YHNDRIDVAVKKSH 312
           + +HS +++   ++S N      DA                     Y  +R+DV ++KSH
Sbjct: 408 KSDHSGQQKPSNSVSSNGFHRNTDADEREAGTDHLSEEDESNESDEYEQERVDVGLRKSH 467

Query: 313 FLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKG 372
           FLSSQ  L HDSLA + WT+QNLC+KC KDGQLL C + +C L +HENCL F   FDE+G
Sbjct: 468 FLSSQYMLSHDSLAEANWTDQNLCIKCCKDGQLLVCGAGSCSLVIHENCLVFSPHFDERG 527

Query: 373 NFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQMGSVCHQMDLANKLHSKDPGHSGSN 432
           +F+CPFCAY+L+ISEYLEAKK+A  ARKEL  F++            +L SK  G S  N
Sbjct: 528 DFYCPFCAYSLAISEYLEAKKKAYSARKELKLFIETRQEYRSNKHTQRLLSKRHGSSRQN 587

Query: 433 GDKDI------HENGNVGEQENNQENQNGQHLHDVSDQLCQKHRAKKKKAEPLHDVSDPL 486
            DKD+      +EN  VGE+   Q N  GQ + + +D   QK + KKK+ EPL       
Sbjct: 588 EDKDLLNKFLDYENL-VGEKR-KQSNNRGQ-ISEGNDHQFQKGKGKKKQVEPL------- 637

Query: 487 CQRHSANKKKAETSASCVNANSPCREEEANAFSGRDCISN----GDKVVEENMDNYCPSE 542
                         ASC+  NS CREEE +     + IS     G++VV+EN      +E
Sbjct: 638 --------------ASCIGVNSLCREEEPDVNVRTNHISTVEKEGEEVVQENSSG---TE 680

Query: 543 RGLEGQPERTPPECGKLACTNTYVEPMDDTEAEAKLQKEDVQPASSESSDPPESPVIALN 602
             +        P   K +  N               +++++   S  +    +  V A++
Sbjct: 681 LDINQHQVSVDP---KYSVDNHLC------------KEKEIVSGSQRTDGRRQKAVCAIS 725

Query: 603 IDEEEISESEDDKFIISNYSIRFRRPKTHYTYPPIPQLRRKKVPWTAKEEEILKKGVQKF 662
            D  E S  EDDK I +NY IRFR+ +  YT P +PQ RRKKVPWTA EEEILK+GVQKF
Sbjct: 726 SDGGETSGDEDDKSISTNYFIRFRKRERQYT-PAMPQSRRKKVPWTAHEEEILKEGVQKF 784

Query: 663 ASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK 707
           AS  D   PWK ILE+GSSVF +GRT IDLKDKWRNMCK SP+SK
Sbjct: 785 AS--DGKYPWKDILEYGSSVFSNGRTTIDLKDKWRNMCKLSPKSK 827

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255571552|ref|XP_002526722.1| conserved hypothetical protein [Ricinus communis] gi|223533911|gb|EEF35636.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297739691|emb|CBI29873.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846688|emb|CAN80644.1| hypothetical protein VITISV_016915 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357445323|ref|XP_003592939.1| PHD finger protein 21A [Medicago truncatula] gi|355481987|gb|AES63190.1| PHD finger protein 21A [Medicago truncatula] Back     alignment and taxonomy information
>gi|224087048|ref|XP_002308044.1| predicted protein [Populus trichocarpa] gi|222854020|gb|EEE91567.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|62733346|gb|AAX95463.1| hypothetical protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413935052|gb|AFW69603.1| putative homeodomain-like transcription factor superfamily protein [Zea mays] Back     alignment and taxonomy information
>gi|413935053|gb|AFW69604.1| putative homeodomain-like transcription factor superfamily protein [Zea mays] Back     alignment and taxonomy information
>gi|242061730|ref|XP_002452154.1| hypothetical protein SORBIDRAFT_04g020760 [Sorghum bicolor] gi|241931985|gb|EES05130.1| hypothetical protein SORBIDRAFT_04g020760 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
TAIR|locus:2035372345 AT1G01150 [Arabidopsis thalian 0.080 0.165 0.526 8.1e-19
TAIR|locus:2006792429 AT1G14770 [Arabidopsis thalian 0.294 0.484 0.288 2.3e-17
TAIR|locus:2200201314 AT1G68030 [Arabidopsis thalian 0.106 0.238 0.36 2.3e-15
TAIR|locus:2144568420 TRFL10 "TRF-like 10" [Arabidop 0.086 0.145 0.540 8.3e-13
TAIR|locus:2135743499 AT4G12670 [Arabidopsis thalian 0.083 0.118 0.508 4.9e-07
UNIPROTKB|Q6T804426 AID1 "ANTHER INDEHISCENCE1" [O 0.077 0.129 0.491 2.1e-05
TAIR|locus:2161233448 AT5G58340 [Arabidopsis thalian 0.082 0.129 0.4 5.2e-05
UNIPROTKB|E1BV70657 LOC769405 "Uncharacterized pro 0.356 0.383 0.248 0.00023
UNIPROTKB|F1NCJ0345 TERF1 "Uncharacterized protein 0.079 0.162 0.430 0.00038
UNIPROTKB|F1NEJ5354 TERF1 "Uncharacterized protein 0.079 0.158 0.430 0.0004
TAIR|locus:2035372 AT1G01150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 176 (67.0 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
 Identities = 30/57 (52%), Positives = 43/57 (75%)

Query:   643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 699
             K+V WT  EE++L++GV+KF+   ++ +PWKKILE G  +F + R + DLKDKWRNM
Sbjct:   233 KRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM 289
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2006792 AT1G14770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200201 AT1G68030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144568 TRFL10 "TRF-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135743 AT4G12670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6T804 AID1 "ANTHER INDEHISCENCE1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2161233 AT5G58340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV70 LOC769405 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCJ0 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEJ5 TERF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XVI000412
hypothetical protein (827 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 2e-13
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-06
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 5e-06
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 4e-05
smart0024947 smart00249, PHD, PHD zinc finger 2e-04
pfam0062851 pfam00628, PHD, PHD-finger 3e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.003
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information 
 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701
             WT +E+E L +GV+K+      +  W KIL+     F + RT++DLKDKWRN+ K
Sbjct: 1   RKWTDEEDEALVEGVEKYG-----VGNWAKILKDYF--FVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 707
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.61
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.27
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.15
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.06
PLN03212 249 Transcription repressor MYB5; Provisional 97.65
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.55
PLN03212 249 Transcription repressor MYB5; Provisional 97.43
PLN03091 459 hypothetical protein; Provisional 97.31
PLN03091 459 hypothetical protein; Provisional 97.25
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 97.24
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.06
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 96.91
KOG4299613 consensus PHD Zn-finger protein [General function 96.77
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.14
KOG0383 696 consensus Predicted helicase [General function pre 96.13
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.11
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.96
KOG0048 238 consensus Transcription factor, Myb superfamily [T 95.62
KOG0048 238 consensus Transcription factor, Myb superfamily [T 95.33
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 94.64
COG5141 669 PHD zinc finger-containing protein [General functi 94.38
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 94.33
KOG0049 939 consensus Transcription factor, Myb superfamily [T 94.02
KOG0051 607 consensus RNA polymerase I termination factor, Myb 93.97
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 93.36
KOG1973274 consensus Chromatin remodeling protein, contains P 93.29
KOG0956 900 consensus PHD finger protein AF10 [General functio 92.07
KOG0049 939 consensus Transcription factor, Myb superfamily [T 88.37
KOG0825 1134 consensus PHD Zn-finger protein [General function 87.12
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 86.49
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 85.77
PLN031421033 Probable chromatin-remodeling complex ATPase chain 84.32
KOG1244336 consensus Predicted transcription factor Requiem/N 83.94
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 83.51
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 80.75
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information 
Probab=98.61  E-value=4e-08  Score=75.93  Aligned_cols=48  Identities=35%  Similarity=0.639  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhc
Q 005228          644 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC  700 (707)
Q Consensus       644 Rr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~  700 (707)
                      |.+||.+|++.|++||.+||     .++|..|....+    .+||..+++.+|+++.
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g-----~~~W~~Ia~~~~----~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYG-----KDNWKKIAKRMP----GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHST-----TTHHHHHHHHHS----SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-----CcHHHHHHHHcC----CCCCHHHHHHHHHhhC
Confidence            56899999999999999999     568999999754    4899999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 7e-19
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 4e-18
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 9e-18
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 5e-17
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 1e-15
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 1e-15
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 4e-15
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 9e-13
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 2e-07
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 2e-06
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 7e-06
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 9e-06
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 1e-05
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 2e-05
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 1e-04
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
 Score = 80.1 bits (198), Expect = 7e-19
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 700
             KK  WT +E E +K GVQK+   +     W  I +      F  RTA+ +KD+WR M 
Sbjct: 8   ITKKQKWTVEESEWVKAGVQKYGEGN-----WAAISKN---YPFVNRTAVMIKDRWRTMK 59

Query: 701 K 701
           +
Sbjct: 60  R 60
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 62 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query707
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.73
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.64
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.62
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.58
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.52
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.41
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.23
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.21
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 98.72
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.69
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 98.63
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.5
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 98.5
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.49
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.49
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.48
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.47
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.45
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.44
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.42
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 98.38
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.38
2yt5_A66 Metal-response element-binding transcription facto 98.37
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.34
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.3
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.3
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.29
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 98.28
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.27
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 98.26
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.19
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.18
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.17
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.16
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 98.14
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.14
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.1
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.1
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.08
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.07
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.07
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.06
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.06
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.04
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.02
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.02
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 97.93
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 97.93
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 97.88
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.81
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 97.8
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.8
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 97.8
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.9
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.68
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.67
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.64
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.62
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.6
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.59
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.58
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.54
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.53
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.48
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 97.41
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.38
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 97.25
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.21
1weu_A91 Inhibitor of growth family, member 4; structural g 97.09
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.09
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.07
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.06
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.05
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 96.79
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.38
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.16
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 96.1
1x4i_A70 Inhibitor of growth protein 3; structural genomics 96.08
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 95.87
1wew_A78 DNA-binding family protein; structural genomics, P 95.87
1we9_A64 PHD finger family protein; structural genomics, PH 95.84
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.61
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 95.52
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 95.48
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.02
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 94.97
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 94.75
1wee_A72 PHD finger family protein; structural genomics, PH 94.55
2crg_A70 Metastasis associated protein MTA3; transcription 94.08
3o70_A68 PHD finger protein 13; PHF13, structural genomics 93.88
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 93.79
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 93.26
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 92.68
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 92.64
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 91.85
4b4c_A 211 Chromodomain-helicase-DNA-binding protein 1; chrom 91.83
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 91.64
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 91.38
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 90.25
1wem_A76 Death associated transcription factor 1; structura 89.41
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 89.39
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 88.47
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 87.03
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 86.63
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 86.53
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 86.15
3kv5_D488 JMJC domain-containing histone demethylation prote 82.45
2xb0_X 270 Chromo domain-containing protein 1; hydrolase, DNA 81.86
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
Probab=99.73  E-value=3.4e-18  Score=140.92  Aligned_cols=57  Identities=28%  Similarity=0.426  Sum_probs=52.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCCC
Q 005228          640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP  704 (707)
Q Consensus       640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks~  704 (707)
                      ..|.+++||.||+++|++||++||     . +|++|+..|+  |+.+||+||||||||||.|+..
T Consensus         4 ~~~~r~~WT~EE~~~L~~gV~k~G-----~-~W~~I~~~y~--f~~~RT~VdLKdk~r~L~k~~~   60 (62)
T 1x58_A            4 GSSGRKDFTKEEVNYLFHGVKTMG-----N-HWNSILWSFP--FQKGRRAVDLAHKYHRLISGPS   60 (62)
T ss_dssp             CCCCSSSCCHHHHHHHHHHHHHHC-----S-CHHHHHHHSC--CCTTCCHHHHHHHHHHHHTCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHh-----H-hHHHHHHhCC--CccCcccchHHHHHHHHHhccc
Confidence            356889999999999999999999     5 9999999998  6799999999999999999753
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 707
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 7e-11
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 5e-09
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-07
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 4e-07
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 4e-06
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-05
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 6e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-04
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 2e-04
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 3e-04
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 4e-04
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 0.002
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 0.002
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 0.003
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 7e-11
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701
           K+  W  +E++ L+ GV+K+   +     W KIL       F+ RT++ LKD+WR M K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGN-----WSKILL---HYKFNNRTSVMLKDRWRTMKK 51
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query707
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.46
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.44
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.33
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 99.0
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.71
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.63
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.52
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.46
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.29
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.26
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.21
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.17
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.02
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 97.99
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.94
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 97.8
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.67
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.64
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.14
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 96.77
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 96.57
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 96.47
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 96.41
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.36
d1wema_76 Death associated transcription factor 1, Datf1 (DI 95.61
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 95.48
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 95.23
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 94.31
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 93.18
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 91.49
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.5e-14  Score=111.78  Aligned_cols=53  Identities=42%  Similarity=0.660  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228          643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS  703 (707)
Q Consensus       643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks  703 (707)
                      +|.+||.||+++|+.||++||     .|+|+.|...++   +.+||++||+||||||.|..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G-----~~~W~~I~~~~~---~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYG-----EGNWAAISKNYP---FVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-----CChHHHHHhhcC---CCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999     799999999875   37899999999999999865
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure