Citrus Sinensis ID: 005235

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------

MRERKKSSAVEVSSVKKKKEKKTKDNNEPREQKEKEESQSIMKQQKNTTSRSKKEKQRKTTEDYESLRESELSGDEVHGTDHDVDNADDHHEEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH

cccccccccHHccHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHccccccccEEEEEccccEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEECcccccEEEEEccccEEEEEEEEcccEEEEEEcccccccEEEEEEcccEEEECcccccccEEEEEccccccccccccccccEEEEEEccccccccEEccccccEEEEEEcccccEEEEEEccccccEEEEEEcccccCECcccccccccEEEEEcccccEEEEEccccEEEEEccccEEEcEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccccCEEEEcccccEEEEEEcccccEEEEECccccEEEEccccccccccccccccccccccccccccccEEEEEEcccccEEEEECccccEEEccc

*********************************************************************************************************************RNTIGDVPLEWYKDEKHIGYDISGKKITK*****KLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPL********RFIPSKWESKKVVQYVRAIRKGLIKFDE*****PKFYLLWGDDS****************PKLPGHEESYNPSLEYIPTQEEL*SYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT*P*DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Ribosome biogenesis protein bop1	Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	probable	A4IHS2
Ribosome biogenesis protein BOP1	Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	probable	P97452
Ribosome biogenesis protein BOP1	Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	probable	Q14137

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3OW8, chain A
Confidence level:very confident
Coverage over the Query: 389-452,487-707
View the alignment between query and template
View the model in PyMOL

Template: 1PGU, chain A
Confidence level:confident
Coverage over the Query: 288-707
View the alignment between query and template
View the model in PyMOL